AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430240 MtrunA17_Chr3g0134171 95.319 470 20 2 1 469 1 469 0.0 892
Msa0430240 MtrunA17_Chr1g0153131 58.811 471 157 12 3 469 7 444 4.57e-174 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430240 AT4G06536.1 51.149 174 57 3 305 463 3 163 2.45e-53 177
Msa0430240 AT4G06534.1 33.660 306 153 12 25 308 26 303 5.37e-37 140

Find 113 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTTCGCAGTAATGTTTC+TGG 0.124831 3_2:+81929711 Msa0430240:CDS
ATTATGGTATTGGTTAATTT+TGG 0.149979 3_2:+81931277 Msa0430240:CDS
GTGTTTCTCATCTAATAAAA+TGG 0.166379 3_2:-81931729 None:intergenic
TTGATTCTCATTGGCTTAAT+AGG 0.191314 3_2:+81931434 Msa0430240:CDS
GGTGATAAGATGAAGCTTAT+TGG 0.237777 3_2:+81930173 Msa0430240:CDS
CAAATTGTGCCAAGTTGTTT+TGG 0.251882 3_2:+81931593 Msa0430240:three_prime_UTR
AATGGTTCTGTTTATCTTGA+TGG 0.259478 3_2:+81930398 Msa0430240:CDS
GCTGCTGATGCTGTTGAAAA+TGG 0.280998 3_2:+81929780 Msa0430240:CDS
AGTTATTCAAAATAATTCTA+TGG 0.287566 3_2:+81930007 Msa0430240:CDS
GTTGAAGAAATGAAGGTTAA+TGG 0.290085 3_2:+81930257 Msa0430240:CDS
TGGCATGTGATTATGAATTC+TGG 0.309761 3_2:-81929640 None:intergenic
GCTGCACCTGCAGGTGATTA+TGG 0.313015 3_2:+81929882 Msa0430240:CDS
AGCTGCTAATATAGACATTA+TGG 0.325126 3_2:+81931261 Msa0430240:CDS
TTGTTTGAAATCGTAATAGA+TGG 0.343448 3_2:+81931532 Msa0430240:CDS
CCCATTGTTGTGGCTTCCTT+TGG 0.343611 3_2:-81931464 None:intergenic
GTGATAAGATGAAGCTTATT+GGG 0.345352 3_2:+81930174 Msa0430240:CDS
ACATACTAGTATAAATGTTT+AGG 0.354004 3_2:-81931784 None:intergenic
GAACAACAAATTTGTTCAGC+TGG 0.355141 3_2:+81929739 Msa0430240:CDS
ATAGATTAAAATTAAGACTA+TGG 0.358611 3_2:-81929556 None:intergenic
ATAGGAACTGATAGGGTAAT+TGG 0.362823 3_2:+81931127 Msa0430240:CDS
TCAAAGAAGGTTACACTGTT+AGG 0.372240 3_2:+81929852 Msa0430240:CDS
GGTGTTCTTTGAGCATTTGC+TGG 0.373884 3_2:-81931322 None:intergenic
TAATATAGACATTATGGTAT+TGG 0.375543 3_2:+81931267 Msa0430240:CDS
CTGGATTGAAAATCCATCTA+TGG 0.380170 3_2:+81929758 Msa0430240:CDS
TACCTTGTTCTAATTGATGA+TGG 0.384921 3_2:-81929668 None:intergenic
CATCTGAAGCAGAGATTAGT+TGG 0.398628 3_2:+81929913 Msa0430240:CDS
CAGAGTGGATAGGAACTGAT+AGG 0.399932 3_2:+81931119 Msa0430240:CDS
GAATTGAAAGAGTTTGGGTT+TGG 0.400073 3_2:-81929430 None:intergenic
GCTTATTGGGAAAGGGAATT+CGG 0.400140 3_2:+81930187 Msa0430240:CDS
TGGGTAGGATTGATTCTCAT+TGG 0.405419 3_2:+81931425 Msa0430240:CDS
AAGAAAACCTTCTTCTGCCT+TGG 0.410505 3_2:-81931163 None:intergenic
TTTCAAAATATGTTTCTTGT+GGG 0.419914 3_2:-81930091 None:intergenic
TGTTTCTCATCTAATAAAAT+GGG 0.423680 3_2:-81931728 None:intergenic
AAAACACAGTTTCCTAAAAC+AGG 0.430605 3_2:-81930068 None:intergenic
GAAAGGGAATTCGGAGGCAT+TGG 0.443470 3_2:+81930196 Msa0430240:CDS
CCAAAGGAAGCCACAACAAT+GGG 0.444127 3_2:+81931464 Msa0430240:CDS
AAAGTTCCTGGGAGTTATCC+TGG 0.448473 3_2:+81930356 Msa0430240:CDS
GGGAGTTATCCTGGTAGCAT+TGG 0.450226 3_2:+81930365 Msa0430240:CDS
ACAGCATCAGCAGCCATAGA+TGG 0.451521 3_2:-81929771 None:intergenic
ACTGATAGGGTAATTGGTTG+TGG 0.452337 3_2:+81931133 Msa0430240:CDS
CCAGGAACTTTCAAAACAAC+AGG 0.459646 3_2:-81930344 None:intergenic
ATTTCAAAATATGTTTCTTG+TGG 0.471502 3_2:-81930092 None:intergenic
CTGGTTCAACGGAATTTCTA+CGG 0.472523 3_2:-81929602 None:intergenic
TCGTTGGGTTTGACAATTGG+TGG 0.478549 3_2:+81930320 Msa0430240:CDS
GTAACCTTCTTTGATGATGA+TGG 0.479391 3_2:-81929843 None:intergenic
AAGGTTAATGGCAGAGAGAA+TGG 0.486017 3_2:+81930269 Msa0430240:CDS
GCGTGGCGATGAATTTGATT+CGG 0.490471 3_2:+81930133 Msa0430240:CDS
TACGAGGAGGATGGTGGGCG+TGG 0.491007 3_2:-81929363 None:intergenic
GCTATCATCGTCGTAACCTA+TGG 0.495429 3_2:-81931386 None:intergenic
CCTAAAACAGGACCAGGTAA+TGG 0.498458 3_2:-81930056 None:intergenic
GAGTGCTAAATTCTTCTGTC+TGG 0.500649 3_2:-81931222 None:intergenic
GGATCATGTGCTGCACCTGC+AGG 0.500904 3_2:+81929873 Msa0430240:CDS
GGTGATACAAGGCATGGATT+TGG 0.501565 3_2:-81931343 None:intergenic
AGATGAAGCTTATTGGGAAA+GGG 0.502001 3_2:+81930180 Msa0430240:CDS
CAGAAAGTTAGATTAAATCC+TGG 0.504257 3_2:+81929966 Msa0430240:CDS
AGAACAGCTTTGCCATTACC+TGG 0.505919 3_2:+81930044 Msa0430240:CDS
ATTTGATCCAAGGCAGAAGA+AGG 0.506798 3_2:+81931156 Msa0430240:CDS
TAGCAAAGAATTATTCTCCA+TGG 0.508073 3_2:+81931405 Msa0430240:CDS
AAATATTGTTCCCATTGTTG+TGG 0.510766 3_2:-81931474 None:intergenic
AAATTCATCGCCACGCGAAG+AGG 0.511644 3_2:-81930126 None:intergenic
TCTATATTAGCAGCTAATGT+TGG 0.513484 3_2:-81931253 None:intergenic
GTAAGTTCTCCTGCTGCCAT+AGG 0.513610 3_2:+81931370 Msa0430240:CDS
AAGATGAAGCTTATTGGGAA+AGG 0.523093 3_2:+81930179 Msa0430240:CDS
GAATAGTGTTGAAGAAATGA+AGG 0.524243 3_2:+81930250 Msa0430240:CDS
GAAAGCTATGATGTTGTACT+TGG 0.528509 3_2:-81931568 None:intergenic
ATCTGAAGCAGAGATTAGTT+GGG 0.538447 3_2:+81929914 Msa0430240:CDS
TCGTCGTAACCTATGGCAGC+AGG 0.540303 3_2:-81931379 None:intergenic
TCACAATTTAACAAAAGATG+TGG 0.541747 3_2:+81929490 Msa0430240:exon
GTGTATGTTTACAGTTTCAA+AGG 0.544739 3_2:+81931693 Msa0430240:three_prime_UTR
AAGAATTATTCTCCATGGGT+AGG 0.547654 3_2:+81931410 Msa0430240:CDS
CATGCCATCATCATCAAAGA+AGG 0.548058 3_2:+81929839 Msa0430240:CDS
TCTCTTCCATAATCACCTGC+AGG 0.552219 3_2:-81929888 None:intergenic
TCGGTAAGAAAGAGTGTGGA+AGG 0.554017 3_2:+81930152 Msa0430240:CDS
GCAGCTAATGTTGGATACAA+TGG 0.556127 3_2:-81931244 None:intergenic
TTGGTTGTGGATTTGATCCA+AGG 0.557657 3_2:+81931146 Msa0430240:CDS
TTAATGGCAGAGAGAATGGT+GGG 0.559463 3_2:+81930273 Msa0430240:CDS
GAGTTAAAACCAATGCTACC+AGG 0.563405 3_2:-81930374 None:intergenic
AACTTACAAGTGGTGATACA+AGG 0.564357 3_2:-81931354 None:intergenic
TGTACTATTTGTACAAGCAA+AGG 0.569630 3_2:-81931635 None:intergenic
AGACTCTTCATCAAAATCCA+TGG 0.570947 3_2:-81931500 None:intergenic
TCTGAGAAGGCAGAGTGGAT+AGG 0.571845 3_2:+81931109 Msa0430240:CDS
CAGTTTCCTAAAACAGGACC+AGG 0.576022 3_2:-81930062 None:intergenic
TCTAATTGATGATGGACACT+TGG 0.579397 3_2:-81929660 None:intergenic
TGGGAACAATATTTCAACCA+TGG 0.581189 3_2:+81931483 Msa0430240:CDS
CTGATGCTGTTGAAAATGGA+TGG 0.581709 3_2:+81929784 Msa0430240:CDS
TGAGAAAGTTACGAGGAGGA+TGG 0.583998 3_2:-81929372 None:intergenic
CACAATTTAACAAAAGATGT+GGG 0.584630 3_2:+81929491 Msa0430240:exon
AGCAAAGAATTATTCTCCAT+GGG 0.584762 3_2:+81931406 Msa0430240:CDS
GAAAGTTACGAGGAGGATGG+TGG 0.586655 3_2:-81929369 None:intergenic
TGATTCGGTAAGAAAGAGTG+TGG 0.590027 3_2:+81930148 Msa0430240:CDS
ATGAGAATCAATCCTACCCA+TGG 0.595354 3_2:-81931422 None:intergenic
ATGCCAGAACCAAAACAACT+TGG 0.596162 3_2:-81931602 None:intergenic
GCATTGGTTCATGTTACAAG+TGG 0.596254 3_2:+81930212 Msa0430240:CDS
ACTTGTATTCGAATCTGAGA+AGG 0.604378 3_2:+81931096 Msa0430240:CDS
ACCAAAGGAAGCCACAACAA+TGG 0.609473 3_2:+81931463 Msa0430240:CDS
ACGATATTGTCCTCTTCGCG+TGG 0.610683 3_2:+81930116 Msa0430240:CDS
AGAGTGGATAGGAACTGATA+GGG 0.611827 3_2:+81931120 Msa0430240:CDS
CATTGGTTCATGTTACAAGT+GGG 0.614555 3_2:+81930213 Msa0430240:CDS
AAAGTTACGAGGAGGATGGT+GGG 0.615927 3_2:-81929368 None:intergenic
CTTAATAGGACTACAACCAA+AGG 0.619022 3_2:+81931448 Msa0430240:CDS
GCAGTTATAGCATCCACCGT+TGG 0.622512 3_2:+81929522 Msa0430240:CDS
GTTAATGGCAGAGAGAATGG+TGG 0.637402 3_2:+81930272 Msa0430240:CDS
ATGCTACCAGGATAACTCCC+AGG 0.638101 3_2:-81930362 None:intergenic
ACTATTTGTACAAGCAAAGG+AGG 0.638539 3_2:-81931632 None:intergenic
ACAAGTGGTGATACAAGGCA+TGG 0.642676 3_2:-81931349 None:intergenic
ATTAGTTGGGAAGTTTCACG+TGG 0.655561 3_2:+81929927 Msa0430240:CDS
TATGGTTGAAACGCATCCAA+CGG 0.657083 3_2:-81929538 None:intergenic
GGTTGAAACGCATCCAACGG+TGG 0.657592 3_2:-81929535 None:intergenic
GTCCATCATCAATTAGAACA+AGG 0.661327 3_2:+81929666 Msa0430240:CDS
TATTGGGAAAGGGAATTCGG+AGG 0.666017 3_2:+81930190 Msa0430240:CDS
AAAATGAGAAAGTTACGAGG+AGG 0.673700 3_2:-81929376 None:intergenic
TCGAATCTGAGAAGGCAGAG+TGG 0.699575 3_2:+81931104 Msa0430240:CDS
GCAGCAGGAGAACTTACAAG+TGG 0.699695 3_2:-81931364 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGATTAAAATTAAGACTA+TGG - chr3_2:81929559-81929578 None:intergenic 15.0%
!! AGTTATTCAAAATAATTCTA+TGG + chr3_2:81930007-81930026 Msa0430240:CDS 15.0%
!!! CTTATTTTCAAAAATTCTTT+AGG + chr3_2:81930632-81930651 Msa0430240:intron 15.0%
!!! TTTTTGAATTGAAAGAGTTT+GGG - chr3_2:81929438-81929457 None:intergenic 20.0%
!! TTTCAAAATATGTTTCTTGT+GGG - chr3_2:81930094-81930113 None:intergenic 20.0%
!! ATTTCAAAATATGTTTCTTG+TGG - chr3_2:81930095-81930114 None:intergenic 20.0%
!! AGAACTTATAAGTATAGTAT+AGG + chr3_2:81930559-81930578 Msa0430240:intron 20.0%
!! AAAAATATTGAAATGACCTT+AGG - chr3_2:81930716-81930735 None:intergenic 20.0%
!!! TAAGGTCATTTCAATATTTT+TGG + chr3_2:81930715-81930734 Msa0430240:intron 20.0%
!! TAATATAGACATTATGGTAT+TGG + chr3_2:81931267-81931286 Msa0430240:CDS 20.0%
!!! ATTATGGTATTGGTTAATTT+TGG + chr3_2:81931277-81931296 Msa0430240:CDS 20.0%
!! TGTTTCTCATCTAATAAAAT+GGG - chr3_2:81931731-81931750 None:intergenic 20.0%
!! ACATACTAGTATAAATGTTT+AGG - chr3_2:81931787-81931806 None:intergenic 20.0%
! AAAAAAATGAGAAAGTTACG+AGG - chr3_2:81929382-81929401 None:intergenic 25.0%
!! GTTTTTGAATTGAAAGAGTT+TGG - chr3_2:81929439-81929458 None:intergenic 25.0%
! TCACAATTTAACAAAAGATG+TGG + chr3_2:81929490-81929509 Msa0430240:exon 25.0%
! CACAATTTAACAAAAGATGT+GGG + chr3_2:81929491-81929510 Msa0430240:exon 25.0%
!!! TAATTTTAATCTATCGTCGT+TGG + chr3_2:81929565-81929584 Msa0430240:CDS 25.0%
!! TGATTAGATTTTCTTAATCC+AGG - chr3_2:81929987-81930006 None:intergenic 25.0%
! CTTGAAAAACAATAAACTCA+AGG - chr3_2:81930442-81930461 None:intergenic 25.0%
! ATGTCATAACTAATAACATG+AGG - chr3_2:81930592-81930611 None:intergenic 25.0%
!! TTGTTTGAAATCGTAATAGA+TGG + chr3_2:81931532-81931551 Msa0430240:CDS 25.0%
! GTGTTTCTCATCTAATAAAA+TGG - chr3_2:81931732-81931751 None:intergenic 25.0%
GAAAAATGAAGGGAAAAAAG+TGG - chr3_2:81929409-81929428 None:intergenic 30.0%
TACCTTGTTCTAATTGATGA+TGG - chr3_2:81929671-81929690 None:intergenic 30.0%
CAGAAAGTTAGATTAAATCC+TGG + chr3_2:81929966-81929985 Msa0430240:CDS 30.0%
AAAACACAGTTTCCTAAAAC+AGG - chr3_2:81930071-81930090 None:intergenic 30.0%
GTGATAAGATGAAGCTTATT+GGG + chr3_2:81930174-81930193 Msa0430240:CDS 30.0%
! GAATAGTGTTGAAGAAATGA+AGG + chr3_2:81930250-81930269 Msa0430240:CDS 30.0%
GTTGAAGAAATGAAGGTTAA+TGG + chr3_2:81930257-81930276 Msa0430240:CDS 30.0%
! TGATTCTGTTATGTTTTCGT+TGG + chr3_2:81930304-81930323 Msa0430240:CDS 30.0%
! GATTCTGTTATGTTTTCGTT+GGG + chr3_2:81930305-81930324 Msa0430240:CDS 30.0%
!!! AGCATTGGTTTTAACTCAAA+TGG + chr3_2:81930380-81930399 Msa0430240:CDS 30.0%
! AATGGTTCTGTTTATCTTGA+TGG + chr3_2:81930398-81930417 Msa0430240:CDS 30.0%
!! GTTTAGATTTTGTAGTCTTG+TGG + chr3_2:81930737-81930756 Msa0430240:intron 30.0%
! GATGATATTTTGTCTTGAAG+TGG - chr3_2:81930816-81930835 None:intergenic 30.0%
TTTACCTACAAAGTACAACA+TGG + chr3_2:81931012-81931031 Msa0430240:intron 30.0%
AGATATCTAAGTGTGATACT+TGG + chr3_2:81931060-81931079 Msa0430240:intron 30.0%
TCTATATTAGCAGCTAATGT+TGG - chr3_2:81931256-81931275 None:intergenic 30.0%
AGCTGCTAATATAGACATTA+TGG + chr3_2:81931261-81931280 Msa0430240:CDS 30.0%
TAGCAAAGAATTATTCTCCA+TGG + chr3_2:81931405-81931424 Msa0430240:CDS 30.0%
AGCAAAGAATTATTCTCCAT+GGG + chr3_2:81931406-81931425 Msa0430240:CDS 30.0%
!! TTGATTCTCATTGGCTTAAT+AGG + chr3_2:81931434-81931453 Msa0430240:CDS 30.0%
AAATATTGTTCCCATTGTTG+TGG - chr3_2:81931477-81931496 None:intergenic 30.0%
TGTACTATTTGTACAAGCAA+AGG - chr3_2:81931638-81931657 None:intergenic 30.0%
GTGTATGTTTACAGTTTCAA+AGG + chr3_2:81931693-81931712 Msa0430240:three_prime_UTR 30.0%
!!! GTATGTCATAAGTTTTGACT+TGG + chr3_2:81931801-81931820 Msa0430240:three_prime_UTR 30.0%
AAAATGAGAAAGTTACGAGG+AGG - chr3_2:81929379-81929398 None:intergenic 35.0%
TGGGTTTGGAGAAAAATGAA+GGG - chr3_2:81929419-81929438 None:intergenic 35.0%
TTGGGTTTGGAGAAAAATGA+AGG - chr3_2:81929420-81929439 None:intergenic 35.0%
! GAATTGAAAGAGTTTGGGTT+TGG - chr3_2:81929433-81929452 None:intergenic 35.0%
!!! AGAATTTTCTGCTGGTTCAA+CGG - chr3_2:81929616-81929635 None:intergenic 35.0%
TGGCATGTGATTATGAATTC+TGG - chr3_2:81929643-81929662 None:intergenic 35.0%
!! TCTAATTGATGATGGACACT+TGG - chr3_2:81929663-81929682 None:intergenic 35.0%
GTCCATCATCAATTAGAACA+AGG + chr3_2:81929666-81929685 Msa0430240:CDS 35.0%
! GAACAACAAATTTGTTCAGC+TGG + chr3_2:81929739-81929758 Msa0430240:CDS 35.0%
CTGGATTGAAAATCCATCTA+TGG + chr3_2:81929758-81929777 Msa0430240:CDS 35.0%
!! GTAACCTTCTTTGATGATGA+TGG - chr3_2:81929846-81929865 None:intergenic 35.0%
TCAAAGAAGGTTACACTGTT+AGG + chr3_2:81929852-81929871 Msa0430240:CDS 35.0%
! ATCTGAAGCAGAGATTAGTT+GGG + chr3_2:81929914-81929933 Msa0430240:CDS 35.0%
GGTGATAAGATGAAGCTTAT+TGG + chr3_2:81930173-81930192 Msa0430240:CDS 35.0%
AAGATGAAGCTTATTGGGAA+AGG + chr3_2:81930179-81930198 Msa0430240:CDS 35.0%
AGATGAAGCTTATTGGGAAA+GGG + chr3_2:81930180-81930199 Msa0430240:CDS 35.0%
!! CATTGGTTCATGTTACAAGT+GGG + chr3_2:81930213-81930232 Msa0430240:CDS 35.0%
! TTTTCGTTGGGTTTGACAAT+TGG + chr3_2:81930317-81930336 Msa0430240:CDS 35.0%
!!! CTGTTGTTTTGAAAGTTCCT+GGG + chr3_2:81930345-81930364 Msa0430240:CDS 35.0%
! CTGTTTATCTTGATGGTAAG+TGG + chr3_2:81930405-81930424 Msa0430240:intron 35.0%
!!! GATTTTGTAGTCTTGTGGAT+AGG + chr3_2:81930742-81930761 Msa0430240:intron 35.0%
TTGTGAATCTGTCAGTTTCA+CGG - chr3_2:81930772-81930791 None:intergenic 35.0%
CAAACCATGTTGTACTTTGT+AGG - chr3_2:81931019-81931038 None:intergenic 35.0%
TAAGTGTGATACTTGGTTAC+AGG + chr3_2:81931067-81931086 Msa0430240:intron 35.0%
ACTTGTATTCGAATCTGAGA+AGG + chr3_2:81931096-81931115 Msa0430240:CDS 35.0%
ATAGGAACTGATAGGGTAAT+TGG + chr3_2:81931127-81931146 Msa0430240:CDS 35.0%
AACTTACAAGTGGTGATACA+AGG - chr3_2:81931357-81931376 None:intergenic 35.0%
AAGAATTATTCTCCATGGGT+AGG + chr3_2:81931410-81931429 Msa0430240:CDS 35.0%
CTTAATAGGACTACAACCAA+AGG + chr3_2:81931448-81931467 Msa0430240:CDS 35.0%
TGGGAACAATATTTCAACCA+TGG + chr3_2:81931483-81931502 Msa0430240:CDS 35.0%
AGACTCTTCATCAAAATCCA+TGG - chr3_2:81931503-81931522 None:intergenic 35.0%
GAAAGCTATGATGTTGTACT+TGG - chr3_2:81931571-81931590 None:intergenic 35.0%
! CAAATTGTGCCAAGTTGTTT+TGG + chr3_2:81931593-81931612 Msa0430240:three_prime_UTR 35.0%
ACTATTTGTACAAGCAAAGG+AGG - chr3_2:81931635-81931654 None:intergenic 35.0%
TATGGTTGAAACGCATCCAA+CGG - chr3_2:81929541-81929560 None:intergenic 40.0%
CTGGTTCAACGGAATTTCTA+CGG - chr3_2:81929605-81929624 None:intergenic 40.0%
!!! CTGGTTCTAGAATTTTCTGC+TGG - chr3_2:81929624-81929643 None:intergenic 40.0%
CTGTTTCGCAGTAATGTTTC+TGG + chr3_2:81929711-81929730 Msa0430240:CDS 40.0%
CTGATGCTGTTGAAAATGGA+TGG + chr3_2:81929784-81929803 Msa0430240:CDS 40.0%
CATGCCATCATCATCAAAGA+AGG + chr3_2:81929839-81929858 Msa0430240:CDS 40.0%
! CATCTGAAGCAGAGATTAGT+TGG + chr3_2:81929913-81929932 Msa0430240:CDS 40.0%
ATTAGTTGGGAAGTTTCACG+TGG + chr3_2:81929927-81929946 Msa0430240:CDS 40.0%
!! TGATTCGGTAAGAAAGAGTG+TGG + chr3_2:81930148-81930167 Msa0430240:CDS 40.0%
GCTTATTGGGAAAGGGAATT+CGG + chr3_2:81930187-81930206 Msa0430240:CDS 40.0%
!! GCATTGGTTCATGTTACAAG+TGG + chr3_2:81930212-81930231 Msa0430240:CDS 40.0%
AAGGTTAATGGCAGAGAGAA+TGG + chr3_2:81930269-81930288 Msa0430240:CDS 40.0%
TTAATGGCAGAGAGAATGGT+GGG + chr3_2:81930273-81930292 Msa0430240:CDS 40.0%
CCAGGAACTTTCAAAACAAC+AGG - chr3_2:81930347-81930366 None:intergenic 40.0%
!!! CCTGTTGTTTTGAAAGTTCC+TGG + chr3_2:81930344-81930363 Msa0430240:CDS 40.0%
GAGTTAAAACCAATGCTACC+AGG - chr3_2:81930377-81930396 None:intergenic 40.0%
GTAAACTTGTGCGATCGTTT+GGG + chr3_2:81930536-81930555 Msa0430240:intron 40.0%
GCTTATACAATCAGAGCCTA+AGG + chr3_2:81930697-81930716 Msa0430240:intron 40.0%
TGTGAATCTGTCAGTTTCAC+GGG - chr3_2:81930771-81930790 None:intergenic 40.0%
GTCTTGAAGTGGAAGCAAAA+AGG - chr3_2:81930805-81930824 None:intergenic 40.0%
GGCTGTGAAACATTTCATGT+GGG - chr3_2:81930867-81930886 None:intergenic 40.0%
!! TGACCATGTGGTTCTAGTAT+GGG - chr3_2:81930888-81930907 None:intergenic 40.0%
!! ATGACCATGTGGTTCTAGTA+TGG - chr3_2:81930889-81930908 None:intergenic 40.0%
ATGAGTATGACATGACCATG+TGG - chr3_2:81930900-81930919 None:intergenic 40.0%
AGAGTGGATAGGAACTGATA+GGG + chr3_2:81931120-81931139 Msa0430240:CDS 40.0%
ACTGATAGGGTAATTGGTTG+TGG + chr3_2:81931133-81931152 Msa0430240:CDS 40.0%
TTGGTTGTGGATTTGATCCA+AGG + chr3_2:81931146-81931165 Msa0430240:CDS 40.0%
ATTTGATCCAAGGCAGAAGA+AGG + chr3_2:81931156-81931175 Msa0430240:CDS 40.0%
AAGAAAACCTTCTTCTGCCT+TGG - chr3_2:81931166-81931185 None:intergenic 40.0%
GAGTGCTAAATTCTTCTGTC+TGG - chr3_2:81931225-81931244 None:intergenic 40.0%
GCAGCTAATGTTGGATACAA+TGG - chr3_2:81931247-81931266 None:intergenic 40.0%
ATGAGAATCAATCCTACCCA+TGG - chr3_2:81931425-81931444 None:intergenic 40.0%
! TGGGTAGGATTGATTCTCAT+TGG + chr3_2:81931425-81931444 Msa0430240:CDS 40.0%
!! GGATTTTGATGAAGAGTCTG+AGG + chr3_2:81931504-81931523 Msa0430240:CDS 40.0%
ATGCCAGAACCAAAACAACT+TGG - chr3_2:81931605-81931624 None:intergenic 40.0%
AAAGTTACGAGGAGGATGGT+GGG - chr3_2:81929371-81929390 None:intergenic 45.0%
TGAGAAAGTTACGAGGAGGA+TGG - chr3_2:81929375-81929394 None:intergenic 45.0%
GCTGCTGATGCTGTTGAAAA+TGG + chr3_2:81929780-81929799 Msa0430240:CDS 45.0%
TCTCTTCCATAATCACCTGC+AGG - chr3_2:81929891-81929910 None:intergenic 45.0%
AGAACAGCTTTGCCATTACC+TGG + chr3_2:81930044-81930063 Msa0430240:CDS 45.0%
CCTAAAACAGGACCAGGTAA+TGG - chr3_2:81930059-81930078 None:intergenic 45.0%
! CCATTACCTGGTCCTGTTTT+AGG + chr3_2:81930056-81930075 Msa0430240:CDS 45.0%
CAGTTTCCTAAAACAGGACC+AGG - chr3_2:81930065-81930084 None:intergenic 45.0%
GCGTGGCGATGAATTTGATT+CGG + chr3_2:81930133-81930152 Msa0430240:CDS 45.0%
! TCGGTAAGAAAGAGTGTGGA+AGG + chr3_2:81930152-81930171 Msa0430240:CDS 45.0%
TATTGGGAAAGGGAATTCGG+AGG + chr3_2:81930190-81930209 Msa0430240:CDS 45.0%
GTTAATGGCAGAGAGAATGG+TGG + chr3_2:81930272-81930291 Msa0430240:CDS 45.0%
TCGTTGGGTTTGACAATTGG+TGG + chr3_2:81930320-81930339 Msa0430240:CDS 45.0%
AAAGTTCCTGGGAGTTATCC+TGG + chr3_2:81930356-81930375 Msa0430240:CDS 45.0%
CGTAAACTTGTGCGATCGTT+TGG + chr3_2:81930535-81930554 Msa0430240:intron 45.0%
GTGAATCTGTCAGTTTCACG+GGG - chr3_2:81930770-81930789 None:intergenic 45.0%
GGGCTGTGAAACATTTCATG+TGG - chr3_2:81930868-81930887 None:intergenic 45.0%
CAGAGTGGATAGGAACTGAT+AGG + chr3_2:81931119-81931138 Msa0430240:CDS 45.0%
GGTGTTCTTTGAGCATTTGC+TGG - chr3_2:81931325-81931344 None:intergenic 45.0%
GGTGATACAAGGCATGGATT+TGG - chr3_2:81931346-81931365 None:intergenic 45.0%
ACAAGTGGTGATACAAGGCA+TGG - chr3_2:81931352-81931371 None:intergenic 45.0%
GCTATCATCGTCGTAACCTA+TGG - chr3_2:81931389-81931408 None:intergenic 45.0%
ACCAAAGGAAGCCACAACAA+TGG + chr3_2:81931463-81931482 Msa0430240:CDS 45.0%
CCAAAGGAAGCCACAACAAT+GGG + chr3_2:81931464-81931483 Msa0430240:CDS 45.0%
!!! GTGCCAAGTTGTTTTGGTTC+TGG + chr3_2:81931599-81931618 Msa0430240:three_prime_UTR 45.0%
GAAAGTTACGAGGAGGATGG+TGG - chr3_2:81929372-81929391 None:intergenic 50.0%
GCAGTTATAGCATCCACCGT+TGG + chr3_2:81929522-81929541 Msa0430240:CDS 50.0%
ACAGCATCAGCAGCCATAGA+TGG - chr3_2:81929774-81929793 None:intergenic 50.0%
ACGATATTGTCCTCTTCGCG+TGG + chr3_2:81930116-81930135 Msa0430240:CDS 50.0%
AAATTCATCGCCACGCGAAG+AGG - chr3_2:81930129-81930148 None:intergenic 50.0%
! GAAAGGGAATTCGGAGGCAT+TGG + chr3_2:81930196-81930215 Msa0430240:CDS 50.0%
ATGCTACCAGGATAACTCCC+AGG - chr3_2:81930365-81930384 None:intergenic 50.0%
GGGAGTTATCCTGGTAGCAT+TGG + chr3_2:81930365-81930384 Msa0430240:CDS 50.0%
CAGCCCATACTAGAACCACA+TGG + chr3_2:81930882-81930901 Msa0430240:intron 50.0%
TCGAATCTGAGAAGGCAGAG+TGG + chr3_2:81931104-81931123 Msa0430240:CDS 50.0%
TCTGAGAAGGCAGAGTGGAT+AGG + chr3_2:81931109-81931128 Msa0430240:CDS 50.0%
GCAGCAGGAGAACTTACAAG+TGG - chr3_2:81931367-81931386 None:intergenic 50.0%
GTAAGTTCTCCTGCTGCCAT+AGG + chr3_2:81931370-81931389 Msa0430240:CDS 50.0%
CCCATTGTTGTGGCTTCCTT+TGG - chr3_2:81931467-81931486 None:intergenic 50.0%
GGTTGAAACGCATCCAACGG+TGG - chr3_2:81929538-81929557 None:intergenic 55.0%
GCTGCACCTGCAGGTGATTA+TGG + chr3_2:81929882-81929901 Msa0430240:CDS 55.0%
TCGTCGTAACCTATGGCAGC+AGG - chr3_2:81931382-81931401 None:intergenic 55.0%
GGATCATGTGCTGCACCTGC+AGG + chr3_2:81929873-81929892 Msa0430240:CDS 60.0%
!! TACGAGGAGGATGGTGGGCG+TGG - chr3_2:81929366-81929385 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81929363 81931825 81929363 ID=Msa0430240;Name=Msa0430240
chr3_2 mRNA 81929363 81931825 81929363 ID=Msa0430240-mRNA-1;Parent=Msa0430240;Name=Msa0430240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=144|1|1|1|1|1|2|240|469
chr3_2 exon 81929363 81930419 81929363 ID=Msa0430240-mRNA-1:exon:22692;Parent=Msa0430240-mRNA-1
chr3_2 exon 81931089 81931825 81931089 ID=Msa0430240-mRNA-1:exon:22693;Parent=Msa0430240-mRNA-1
chr3_2 five_prime_UTR 81929363 81929506 81929363 ID=Msa0430240-mRNA-1:five_prime_utr;Parent=Msa0430240-mRNA-1
chr3_2 CDS 81929507 81930419 81929507 ID=Msa0430240-mRNA-1:cds;Parent=Msa0430240-mRNA-1
chr3_2 CDS 81931089 81931585 81931089 ID=Msa0430240-mRNA-1:cds;Parent=Msa0430240-mRNA-1
chr3_2 three_prime_UTR 81931586 81931825 81931586 ID=Msa0430240-mRNA-1:three_prime_utr;Parent=Msa0430240-mRNA-1
Gene Sequence

>Msa0430240

ATGTGGGTGCATATTGCAGTTATAGCATCCACCGTTGGATGCGTTTCAACCATAGTCTTAATTTTAATCTATCGTCGTTGGTGTCATCGAAGAAACCGTAGAAATTCCGTTGAACCAGCAGAAAATTCTAGAACCAGAATTCATAATCACATGCCAAGTGTCCATCATCAATTAGAACAAGGTAGTAACAAGAACAATAATTCTCTGTTTCGCAGTAATGTTTCTGGAAAAAGAACAACAAATTTGTTCAGCTGGATTGAAAATCCATCTATGGCTGCTGATGCTGTTGAAAATGGATGGTCAAGATTTGCTTTCACTAGCTATAAAAGTTACATGCCATCATCATCAAAGAAGGTTACACTGTTAGGATCATGTGCTGCACCTGCAGGTGATTATGGAAGAGAATCATCTGAAGCAGAGATTAGTTGGGAAGTTTCACGTGGATCAGATGAGTTTATGCAGAAAGTTAGATTAAATCCTGGATTAAGAAAATCTAATCAAGTTATTCAAAATAATTCTATGGTTAATTCTGTTATTAGAACAGCTTTGCCATTACCTGGTCCTGTTTTAGGAAACTGTGTTTTCCCACAAGAAACATATTTTGAAATTACGATATTGTCCTCTTCGCGTGGCGATGAATTTGATTCGGTAAGAAAGAGTGTGGAAGGTGATAAGATGAAGCTTATTGGGAAAGGGAATTCGGAGGCATTGGTTCATGTTACAAGTGGGAATAGTAATAAAATGAATAGTGTTGAAGAAATGAAGGTTAATGGCAGAGAGAATGGTGGGAAGAAGAGTGATTCTGTTATGTTTTCGTTGGGTTTGACAATTGGTGGTCCTGTTGTTTTGAAAGTTCCTGGGAGTTATCCTGGTAGCATTGGTTTTAACTCAAATGGTTCTGTTTATCTTGATGGAATGAAACTTGTATTCGAATCTGAGAAGGCAGAGTGGATAGGAACTGATAGGGTAATTGGTTGTGGATTTGATCCAAGGCAGAAGAAGGTTTTCTTTACATTAGACTCAGAATTGATGCATGTCATACATTGCCAGACAGAAGAATTTAGCACTCCATTGTATCCAACATTAGCTGCTAATATAGACATTATGGTATTGGTTAATTTTGGACAAAATGCATTTAAATATGCACCAGCAAATGCTCAAAGAACACCAAATCCATGCCTTGTATCACCACTTGTAAGTTCTCCTGCTGCCATAGGTTACGACGATGATAGCAAAGAATTATTCTCCATGGGTAGGATTGATTCTCATTGGCTTAATAGGACTACAACCAAAGGAAGCCACAACAATGGGAACAATATTTCAACCATGGATTTTGATGAAGAGTCTGAGGCTGATTTGTTTGAAATCGTAATAGATGGTTCTAGAAAATCTCCAAGTACAACATCATAG

Protein sequence

>Msa0430240

MWVHIAVIASTVGCVSTIVLILIYRRWCHRRNRRNSVEPAENSRTRIHNHMPSVHHQLEQGSNKNNNSLFRSNVSGKRTTNLFSWIENPSMAADAVENGWSRFAFTSYKSYMPSSSKKVTLLGSCAAPAGDYGRESSEAEISWEVSRGSDEFMQKVRLNPGLRKSNQVIQNNSMVNSVIRTALPLPGPVLGNCVFPQETYFEITILSSSRGDEFDSVRKSVEGDKMKLIGKGNSEALVHVTSGNSNKMNSVEEMKVNGRENGGKKSDSVMFSLGLTIGGPVVLKVPGSYPGSIGFNSNGSVYLDGMKLVFESEKAEWIGTDRVIGCGFDPRQKKVFFTLDSELMHVIHCQTEEFSTPLYPTLAANIDIMVLVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPAAIGYDDDSKELFSMGRIDSHWLNRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSRKSPSTTS*