AlfalfaGEDB | Msa0060070

M. sativa cultivar zhongmu-4 / Msa0060070

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060070	RHN77891.1	98.338	361	6	0	1	361	200	560	0.0	748

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060070	sp\|O04086\|Y1105_ARATH	62.682	343	107	7	21	343	276	617	8.34e-146	429

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060070	A0A396JMJ4	98.338	361	6	0	1	361	200	560	0.0	748

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0060070	0.805577	1.248241e-49	-8.615850e-47
Msa0004480	Msa0060070	0.846122	2.648070e-59	-8.615850e-47
Msa0011050	Msa0060070	0.890992	5.964255e-74	-8.615850e-47
Msa0012710	Msa0060070	0.809435	1.894769e-50	-8.615850e-47
Msa0017320	Msa0060070	0.812824	3.490815e-51	-8.615850e-47
Msa0033850	Msa0060070	0.881329	2.626884e-70	-8.615850e-47
Msa0043530	Msa0060070	0.807210	5.650215e-50	-8.615850e-47
Msa0048390	Msa0060070	0.890938	6.264484e-74	-8.615850e-47
Msa0048400	Msa0060070	0.883057	6.187642e-71	-8.615850e-47
Msa0059900	Msa0060070	0.811991	5.305795e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060070	MtrunA17_Chr1g0159611	98.338	361	6	0	1	361	200	560	0.0	748
Msa0060070	MtrunA17_Chr2g0277731	64.943	348	104	7	12	341	276	623	2.70e-157	456
Msa0060070	MtrunA17_Chr8g0380681	59.633	327	119	6	21	334	291	617	3.98e-125	389
Msa0060070	MtrunA17_Chr8g0380681	56.677	337	134	5	10	334	949	1285	1.65e-120	377
Msa0060070	MtrunA17_Chr1g0196391	47.801	341	170	6	28	362	284	622	1.75e-108	331
Msa0060070	MtrunA17_Chr7g0259211	47.605	334	168	3	3	329	243	576	2.69e-106	326
Msa0060070	MtrunA17_Chr8g0358781	40.822	365	200	7	1	361	311	663	1.83e-85	272
Msa0060070	MtrunA17_Chr2g0333181	45.548	292	151	3	28	316	28	314	5.93e-84	259
Msa0060070	MtrunA17_Chr8g0358821	42.197	346	185	7	19	360	673	1007	7.21e-83	272
Msa0060070	MtrunA17_Chr2g0314881	45.545	303	153	4	18	315	207	502	1.39e-82	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060070	AT1G11050.1	62.682	343	107	7	21	343	276	617	8.48e-147	429
Msa0060070	AT2G48010.1	49.684	316	155	3	17	329	260	574	3.66e-106	325
Msa0060070	AT1G29720.1	42.478	339	188	3	28	364	661	994	4.36e-83	273
Msa0060070	AT3G24550.1	42.899	338	176	5	28	360	268	593	4.34e-82	263
Msa0060070	AT3G24540.1	43.492	315	167	4	28	337	171	479	2.99e-80	253
Msa0060070	AT4G01330.3	44.407	295	156	3	25	316	147	436	3.01e-80	253
Msa0060070	AT4G01330.1	44.407	295	156	3	25	316	147	436	3.83e-80	253
Msa0060070	AT1G01540.2	43.390	295	159	3	25	316	139	428	3.98e-80	253
Msa0060070	AT4G01330.2	44.407	295	156	3	25	316	147	436	5.08e-80	253
Msa0060070	AT1G56120.3	41.493	335	186	4	28	361	532	857	1.43e-79	261

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Find 52 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+TGG	0.237200	1_2:+17660425	Msa0060070:CDS
AAAATGGGATAAGATGAGGA+AGG	0.620599	1_2:+17659740	None:intergenic
AAAGCGAAAGTTGCTGATTT+TGG	0.205837	1_2:+17660296	Msa0060070:CDS
AACACTTTCAGATGGAACTT+TGG	0.455446	1_2:+17659923	Msa0060070:CDS
AACCATTTAGCTCCTGTATT+AGG	0.340012	1_2:-17659813	None:intergenic
AAGAATATGATTGGTCAAGG+TGG	0.651008	1_2:+17659879	Msa0060070:CDS
AATTCTTTGTGCTCATGCAA+TGG	0.562123	1_2:+17660628	Msa0060070:CDS
ACAAGAGTAGCTGGTACATA+TGG	0.459572	1_2:+17660359	Msa0060070:CDS
ACAGGCCTATCAGGTAAATT+AGG	0.306930	1_2:-17660710	None:intergenic
AGGAATCTTCTTGCTTTAAG+AGG	0.382970	1_2:+17660032	Msa0060070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATATATCAGAGCTTGAAA+AGG	+	chr1_2:17659836-17659855	Msa0060070:CDS	30.0%
GTTGCAAGTCATAATGTAAA+AGG	+	chr1_2:17660062-17660081	Msa0060070:CDS	30.0%
TGGTAACTTAAACTTCCATT+AGG	-	chr1_2:17660119-17660138	None:intergenic	30.0%
TAGCACCATTAACTGATAAT+TGG	-	chr1_2:17660139-17660158	None:intergenic	30.0%
ATTATACTTGATGTGGCTAA+AGG	+	chr1_2:17660188-17660207	Msa0060070:CDS	30.0%
TTATACTTGATGTGGCTAAA+GGG	+	chr1_2:17660189-17660208	Msa0060070:CDS	30.0%
ATCAAGCAGTTAAAGATGAA+GGG	+	chr1_2:17660570-17660589	Msa0060070:CDS	30.0%
TCATATATCAGAGCTTGAAA+AGG	+	chr1_2:17659836-17659855	Msa0060070:CDS	30.0%
GTTGCAAGTCATAATGTAAA+AGG	+	chr1_2:17660062-17660081	Msa0060070:CDS	30.0%
TGGTAACTTAAACTTCCATT+AGG	-	chr1_2:17660119-17660138	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	17659753	17660853	17659753	ID=Msa0060070;Name=Msa0060070
chr1_2	mRNA	17659753	17660853	17659753	ID=Msa0060070-mRNA-1;Parent=Msa0060070;Name=Msa0060070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|366
chr1_2	exon	17659753	17660853	17659753	ID=Msa0060070-mRNA-1:exon:6810;Parent=Msa0060070-mRNA-1
chr1_2	CDS	17659753	17660853	17659753	ID=Msa0060070-mRNA-1:cds;Parent=Msa0060070-mRNA-1

Gene Sequence

>Msa0060070

ATGAGGAAGGAGAATATTTATCACAGGTCAATTGAAAACAGTGTTAGAGACAGTGTTTTGCCTAATACAGGAGCTAAATGGTTTCATATATCAGAGCTTGAAAAGGCTACAAACAAGTTTTCACAGAAGAATATGATTGGTCAAGGTGGTGATGGTGTTGTGTACAAAGGAACACTTTCAGATGGAACTTTGGTTGCAGTGAAAGAAATTTTTGATTTGGATACTAGAGGTGATGAAGAGTTTATCTATGAAGTTGAGATTATAAGCAAAATTAAGCATAGGAATCTTCTTGCTTTAAGAGGATGTTGTGTTGCAAGTCATAATGTAAAAGGTAAGAGAAGGTTTTTGGTTTATGATTATATGCCTAATGGAAGTTTAAGTTACCAATTATCAGTTAATGGTGCTAATAAGCTTACTTGGCCACAAAGGAAGAATATTATACTTGATGTGGCTAAAGGGCTAGCTTATTTGCATTATGAAATCAAACCGCCGATTTTTCATCGCGATATTAAGGCGACGAATGTACTTTTGGATTCGAAAATGAAAGCGAAAGTTGCTGATTTTGGTTTGGCAAAACAAGGAAATGAAGGACAATCTCATCTCACAACAAGAGTAGCTGGTACATATGGTTATTTAGCACCTGAGTATGCTTTATATGGTCAATTAACTGAGAAAAGTGATGTTTATAGTTTTGGCATTGTGATACTTGAGATAATGAGTGGTAGAAAAGTGCTTGATACAATGAATTCACCAGTTGTTTTGATCACTGATTGGGCTTGGACACTTGCAAAATCAGGTAAAGTTGATGAAATATTTGATCAAGCAGTTAAAGATGAAGGGCCAGAGAAAATCATGGAAAGGTTTGTGCTTGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTAAGACCTACTATTGCTGAGGCAATTAAGATGTTAGAAGGTGATATTGATATTCCTAATTTACCTGATAGGCCTGTTCCACTTGGTCATGAATCTTTTCAATCTTCTCTTTTGAATGGTATGCAAAGTGGAAGATCAACACCTTATTATAATTCTTCTTATTCTACAAGTATGATTAGCAAAATTAGTTTCAAATGA

Protein sequence

>Msa0060070

MRKENIYHRSIENSVRDSVLPNTGAKWFHISELEKATNKFSQKNMIGQGGDGVVYKGTLSDGTLVAVKEIFDLDTRGDEEFIYEVEIISKIKHRNLLALRGCCVASHNVKGKRRFLVYDYMPNGSLSYQLSVNGANKLTWPQRKNIILDVAKGLAYLHYEIKPPIFHRDIKATNVLLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSPVVLITDWAWTLAKSGKVDEIFDQAVKDEGPEKIMERFVLVGILCAHAMVALRPTIAEAIKMLEGDIDIPNLPDRPVPLGHESFQSSLLNGMQSGRSTPYYNSSYSTSMISKISFK*