Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184690 | XP_003627627.1 | 86.400 | 125 | 6 | 1 | 1 | 114 | 24 | 148 | 2.13e-70 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184690 | sp|Q0JBH9|ERG3_ORYSJ | 49.587 | 121 | 49 | 2 | 2 | 111 | 25 | 144 | 6.87e-36 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184690 | G7LCN6 | 86.400 | 125 | 6 | 1 | 1 | 114 | 24 | 148 | 1.02e-70 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1184690 | 0.824363 | 8.405839e-54 | -8.615850e-47 |
| Msa0005380 | Msa1184690 | 0.805869 | 1.083749e-49 | -8.615850e-47 |
| Msa0011840 | Msa1184690 | 0.822370 | 2.456204e-53 | -8.615850e-47 |
| Msa0020390 | Msa1184690 | 0.801485 | 8.805004e-49 | -8.615850e-47 |
| Msa0024400 | Msa1184690 | 0.811008 | 8.679338e-51 | -8.615850e-47 |
| Msa0026630 | Msa1184690 | 0.806953 | 6.403156e-50 | -8.615850e-47 |
| Msa0030160 | Msa1184690 | 0.800753 | 1.242897e-48 | -8.615850e-47 |
| Msa0030700 | Msa1184690 | 0.801545 | 8.560886e-49 | -8.615850e-47 |
| Msa0032080 | Msa1184690 | 0.839263 | 1.759020e-57 | -8.615850e-47 |
| Msa0035020 | Msa1184690 | 0.800578 | 1.349394e-48 | -8.615850e-47 |
| Msa0060730 | Msa1184690 | -0.820702 | 5.964614e-53 | -8.615850e-47 |
| Msa0071250 | Msa1184690 | 0.808117 | 3.625352e-50 | -8.615850e-47 |
| Msa0076290 | Msa1184690 | 0.820710 | 5.940809e-53 | -8.615850e-47 |
| Msa0078120 | Msa1184690 | 0.808691 | 2.735057e-50 | -8.615850e-47 |
| Msa0092410 | Msa1184690 | 0.804695 | 1.909318e-49 | -8.615850e-47 |
| Msa0095770 | Msa1184690 | 0.801362 | 9.333998e-49 | -8.615850e-47 |
| Msa0105410 | Msa1184690 | 0.820186 | 7.836701e-53 | -8.615850e-47 |
| Msa0117520 | Msa1184690 | 0.819364 | 1.207193e-52 | -8.615850e-47 |
| Msa0604290 | Msa1184690 | 0.855482 | 6.124797e-62 | -8.615850e-47 |
| Msa0610520 | Msa1184690 | 0.812862 | 3.424637e-51 | -8.615850e-47 |
| Msa0613110 | Msa1184690 | 0.801216 | 9.999437e-49 | -8.615850e-47 |
| Msa0613340 | Msa1184690 | 0.812043 | 5.170196e-51 | -8.615850e-47 |
| Msa0629240 | Msa1184690 | 0.838017 | 3.692094e-57 | -8.615850e-47 |
| Msa0631320 | Msa1184690 | 0.823601 | 1.268529e-53 | -8.615850e-47 |
| Msa0632420 | Msa1184690 | 0.824245 | 8.958284e-54 | -8.615850e-47 |
| Msa0641130 | Msa1184690 | 0.855806 | 4.926450e-62 | -8.615850e-47 |
| Msa0646240 | Msa1184690 | 0.803517 | 3.357619e-49 | -8.615850e-47 |
| Msa0651560 | Msa1184690 | 0.805481 | 1.307491e-49 | -8.615850e-47 |
| Msa0679670 | Msa1184690 | 0.838655 | 2.527008e-57 | -8.615850e-47 |
| Msa0682680 | Msa1184690 | 0.806780 | 6.967751e-50 | -8.615850e-47 |
| Msa0697680 | Msa1184690 | 0.800363 | 1.492890e-48 | -8.615850e-47 |
| Msa0703810 | Msa1184690 | 0.828532 | 8.530502e-55 | -8.615850e-47 |
| Msa0709120 | Msa1184690 | 0.832134 | 1.124317e-55 | -8.615850e-47 |
| Msa0711150 | Msa1184690 | 0.838233 | 3.247918e-57 | -8.615850e-47 |
| Msa0733010 | Msa1184690 | 0.812535 | 4.037748e-51 | -8.615850e-47 |
| Msa0735550 | Msa1184690 | 0.812023 | 5.222654e-51 | -8.615850e-47 |
| Msa0738030 | Msa1184690 | 0.800287 | 1.547186e-48 | -8.615850e-47 |
| Msa0741440 | Msa1184690 | 0.807281 | 5.456109e-50 | -8.615850e-47 |
| Msa0743930 | Msa1184690 | 0.833181 | 6.178967e-56 | -8.615850e-47 |
| Msa0744640 | Msa1184690 | 0.816253 | 6.083929e-52 | -8.615850e-47 |
| Msa0746170 | Msa1184690 | 0.826289 | 2.943948e-54 | -8.615850e-47 |
| Msa0746210 | Msa1184690 | 0.827740 | 1.323575e-54 | -8.615850e-47 |
| Msa0747630 | Msa1184690 | 0.830657 | 2.595094e-55 | -8.615850e-47 |
| Msa0750810 | Msa1184690 | 0.816812 | 4.560376e-52 | -8.615850e-47 |
| Msa0750850 | Msa1184690 | 0.811243 | 7.719048e-51 | -8.615850e-47 |
| Msa0784480 | Msa1184690 | 0.822727 | 2.028852e-53 | -8.615850e-47 |
| Msa0816130 | Msa1184690 | 0.836340 | 9.907652e-57 | -8.615850e-47 |
| Msa0822500 | Msa1184690 | 0.847994 | 8.131490e-60 | -8.615850e-47 |
| Msa0823540 | Msa1184690 | 0.802764 | 4.805638e-49 | -8.615850e-47 |
| Msa0830230 | Msa1184690 | 0.810635 | 1.045013e-50 | -8.615850e-47 |
| Msa0840060 | Msa1184690 | 0.811857 | 5.676122e-51 | -8.615850e-47 |
| Msa0841730 | Msa1184690 | 0.815874 | 7.391800e-52 | -8.615850e-47 |
| Msa0121200 | Msa1184690 | 0.816357 | 5.764399e-52 | -8.615850e-47 |
| Msa0121230 | Msa1184690 | 0.830414 | 2.976279e-55 | -8.615850e-47 |
| Msa0124320 | Msa1184690 | 0.803408 | 3.535573e-49 | -8.615850e-47 |
| Msa0137800 | Msa1184690 | 0.809852 | 1.541411e-50 | -8.615850e-47 |
| Msa0139670 | Msa1184690 | 0.832263 | 1.044229e-55 | -8.615850e-47 |
| Msa0148320 | Msa1184690 | 0.811979 | 5.338072e-51 | -8.615850e-47 |
| Msa0150230 | Msa1184690 | 0.802858 | 4.595440e-49 | -8.615850e-47 |
| Msa0160960 | Msa1184690 | 0.823765 | 1.161025e-53 | -8.615850e-47 |
| Msa0163510 | Msa1184690 | 0.800811 | 1.209506e-48 | -8.615850e-47 |
| Msa0190930 | Msa1184690 | 0.800440 | 1.439772e-48 | -8.615850e-47 |
| Msa0194920 | Msa1184690 | 0.856830 | 2.467649e-62 | -8.615850e-47 |
| Msa0204960 | Msa1184690 | 0.826269 | 2.975619e-54 | -8.615850e-47 |
| Msa0217480 | Msa1184690 | 0.815420 | 9.328286e-52 | -8.615850e-47 |
| Msa0217670 | Msa1184690 | 0.813265 | 2.793076e-51 | -8.615850e-47 |
| Msa0217700 | Msa1184690 | 0.814140 | 1.792439e-51 | -8.615850e-47 |
| Msa0233250 | Msa1184690 | 0.801569 | 8.465389e-49 | -8.615850e-47 |
| Msa0236920 | Msa1184690 | 0.835267 | 1.853756e-56 | -8.615850e-47 |
| Msa0374890 | Msa1184690 | 0.835476 | 1.641139e-56 | -8.615850e-47 |
| Msa0375070 | Msa1184690 | 0.818122 | 2.310866e-52 | -8.615850e-47 |
| Msa0379690 | Msa1184690 | 0.848140 | 7.407800e-60 | -8.615850e-47 |
| Msa0382370 | Msa1184690 | 0.842624 | 2.307694e-58 | -8.615850e-47 |
| Msa0385500 | Msa1184690 | 0.840714 | 7.364562e-58 | -8.615850e-47 |
| Msa0388730 | Msa1184690 | 0.832309 | 1.017588e-55 | -8.615850e-47 |
| Msa0389210 | Msa1184690 | 0.833313 | 5.731039e-56 | -8.615850e-47 |
| Msa0394120 | Msa1184690 | 0.821188 | 4.610882e-53 | -8.615850e-47 |
| Msa0403770 | Msa1184690 | 0.830472 | 2.881427e-55 | -8.615850e-47 |
| Msa0432160 | Msa1184690 | 0.854277 | 1.369752e-61 | -8.615850e-47 |
| Msa0450400 | Msa1184690 | -0.834418 | 3.031262e-56 | -8.615850e-47 |
| Msa0469620 | Msa1184690 | -0.817128 | 3.871357e-52 | -8.615850e-47 |
| Msa0470880 | Msa1184690 | 0.847496 | 1.114620e-59 | -8.615850e-47 |
| Msa0476680 | Msa1184690 | 0.856822 | 2.480325e-62 | -8.615850e-47 |
| Msa0992510 | Msa1184690 | 0.830595 | 2.688803e-55 | -8.615850e-47 |
| Msa0999680 | Msa1184690 | 0.802272 | 6.069781e-49 | -8.615850e-47 |
| Msa1022030 | Msa1184690 | 0.803708 | 3.064954e-49 | -8.615850e-47 |
| Msa1026480 | Msa1184690 | 0.807694 | 4.460285e-50 | -8.615850e-47 |
| Msa1037520 | Msa1184690 | 0.815118 | 1.089212e-51 | -8.615850e-47 |
| Msa1062040 | Msa1184690 | 0.821747 | 3.424582e-53 | -8.615850e-47 |
| Msa1071320 | Msa1184690 | 0.806158 | 9.423040e-50 | -8.615850e-47 |
| Msa1089450 | Msa1184690 | 0.807815 | 4.204047e-50 | -8.615850e-47 |
| Msa1089460 | Msa1184690 | 0.818396 | 2.003746e-52 | -8.615850e-47 |
| Msa1096070 | Msa1184690 | 0.838159 | 3.392979e-57 | -8.615850e-47 |
| Msa0241140 | Msa1184690 | 0.814905 | 1.214360e-51 | -8.615850e-47 |
| Msa0257490 | Msa1184690 | 0.837275 | 5.721986e-57 | -8.615850e-47 |
| Msa0269560 | Msa1184690 | 0.812377 | 4.371998e-51 | -8.615850e-47 |
| Msa0278570 | Msa1184690 | 0.817538 | 3.131546e-52 | -8.615850e-47 |
| Msa0278580 | Msa1184690 | 0.823458 | 1.370466e-53 | -8.615850e-47 |
| Msa0281530 | Msa1184690 | 0.822712 | 2.045774e-53 | -8.615850e-47 |
| Msa0287870 | Msa1184690 | 0.800254 | 1.571107e-48 | -8.615850e-47 |
| Msa0296620 | Msa1184690 | 0.829902 | 3.968878e-55 | -8.615850e-47 |
| Msa0296790 | Msa1184690 | 0.846553 | 2.020936e-59 | -8.615850e-47 |
| Msa0296820 | Msa1184690 | 0.810335 | 1.213108e-50 | -8.615850e-47 |
| Msa0304730 | Msa1184690 | 0.812214 | 4.744056e-51 | -8.615850e-47 |
| Msa0317960 | Msa1184690 | 0.808044 | 3.758077e-50 | -8.615850e-47 |
| Msa0317970 | Msa1184690 | 0.819820 | 9.501329e-53 | -8.615850e-47 |
| Msa0321690 | Msa1184690 | 0.806909 | 6.541398e-50 | -8.615850e-47 |
| Msa0331020 | Msa1184690 | 0.801063 | 1.074669e-48 | -8.615850e-47 |
| Msa0347750 | Msa1184690 | 0.801056 | 1.077860e-48 | -8.615850e-47 |
| Msa0358860 | Msa1184690 | 0.800659 | 1.298908e-48 | -8.615850e-47 |
| Msa1107200 | Msa1184690 | 0.833275 | 5.855495e-56 | -8.615850e-47 |
| Msa1109810 | Msa1184690 | 0.808697 | 2.726605e-50 | -8.615850e-47 |
| Msa1128270 | Msa1184690 | 0.800767 | 1.235193e-48 | -8.615850e-47 |
| Msa1129330 | Msa1184690 | 0.801073 | 1.069584e-48 | -8.615850e-47 |
| Msa1150780 | Msa1184690 | 0.827805 | 1.276834e-54 | -8.615850e-47 |
| Msa1166090 | Msa1184690 | -0.800369 | 1.488928e-48 | -8.615850e-47 |
| Msa1178580 | Msa1184690 | 0.855233 | 7.236473e-62 | -8.615850e-47 |
| Msa1184690 | Msa1191440 | 0.824301 | 8.691504e-54 | -8.615850e-47 |
| Msa1184690 | Msa1206270 | 0.810086 | 1.372566e-50 | -8.615850e-47 |
| Msa1184690 | Msa1212050 | 0.819343 | 1.220867e-52 | -8.615850e-47 |
| Msa1184690 | Msa1213890 | 0.836307 | 1.010162e-56 | -8.615850e-47 |
| Msa1184690 | Msa1214170 | 0.819734 | 9.942549e-53 | -8.615850e-47 |
| Msa1184690 | Msa1218580 | 0.827792 | 1.286441e-54 | -8.615850e-47 |
| Msa1184690 | Msa1229480 | 0.805434 | 1.337528e-49 | -8.615850e-47 |
| Msa1184690 | Msa1233850 | 0.832176 | 1.097624e-55 | -8.615850e-47 |
| Msa1184690 | Msa1234620 | 0.823672 | 1.220908e-53 | -8.615850e-47 |
| Msa1184690 | Msa1238170 | 0.826415 | 2.747535e-54 | -8.615850e-47 |
| Msa1184690 | Msa1238600 | 0.888984 | 3.633158e-73 | -8.615850e-47 |
| Msa1184690 | Msa1238660 | 0.806787 | 6.942721e-50 | -8.615850e-47 |
| Msa1184690 | Msa1240970 | 0.821356 | 4.217478e-53 | -8.615850e-47 |
| Msa1184690 | Msa1256810 | 0.802847 | 4.620281e-49 | -8.615850e-47 |
| Msa1184690 | Msa1259860 | 0.818597 | 1.804232e-52 | -8.615850e-47 |
| Msa1184690 | Msa1270050 | 0.821947 | 3.079057e-53 | -8.615850e-47 |
| Msa1184690 | Msa1271130 | 0.864950 | 8.407139e-65 | -8.615850e-47 |
| Msa1184690 | Msa1272010 | 0.802400 | 5.712760e-49 | -8.615850e-47 |
| Msa1184690 | Msa1276150 | 0.858960 | 5.754698e-63 | -8.615850e-47 |
| Msa1184690 | Msa1291300 | 0.803369 | 3.602046e-49 | -8.615850e-47 |
| Msa1184690 | Msa1296260 | 0.805403 | 1.357357e-49 | -8.615850e-47 |
| Msa1184690 | Msa1312440 | 0.806423 | 8.285711e-50 | -8.615850e-47 |
| Msa1184690 | Msa1319560 | 0.827026 | 1.963694e-54 | -8.615850e-47 |
| Msa1184690 | Msa1320850 | 0.802323 | 5.925018e-49 | -8.615850e-47 |
| Msa1184690 | Msa1330920 | 0.810073 | 1.381871e-50 | -8.615850e-47 |
| Msa1184690 | Msa1331050 | -0.801818 | 7.523929e-49 | -8.615850e-47 |
| Msa1184690 | Msa1331760 | 0.836220 | 1.062873e-56 | -8.615850e-47 |
| Msa1184690 | Msa1345940 | 0.803109 | 4.078369e-49 | -8.615850e-47 |
| Msa1184690 | Msa1346840 | 0.811653 | 6.286078e-51 | -8.615850e-47 |
| Msa1184690 | Msa1355890 | 0.811384 | 7.192226e-51 | -8.615850e-47 |
| Msa1184690 | Msa1360020 | 0.823944 | 1.054221e-53 | -8.615850e-47 |
| Msa1184690 | Msa1369920 | -0.826303 | 2.921674e-54 | -8.615850e-47 |
| Msa1184690 | Msa1370590 | 0.825026 | 5.865587e-54 | -8.615850e-47 |
| Msa1184690 | Msa1380220 | 0.832771 | 7.813655e-56 | -8.615850e-47 |
| Msa1184690 | Msa1384100 | 0.829791 | 4.224239e-55 | -8.615850e-47 |
| Msa1184690 | Msa1397390 | 0.802077 | 6.656737e-49 | -8.615850e-47 |
| Msa1184690 | Msa1407760 | 0.846833 | 1.693673e-59 | -8.615850e-47 |
| Msa1184690 | Msa1410550 | 0.833283 | 5.830631e-56 | -8.615850e-47 |
| Msa1184690 | Msa1418240 | 0.803304 | 3.716332e-49 | -8.615850e-47 |
| Msa1184690 | Msa1419690 | 0.841301 | 5.162738e-58 | -8.615850e-47 |
| Msa1184690 | Msa1419840 | 0.800796 | 1.218490e-48 | -8.615850e-47 |
| Msa1184690 | Msa1428900 | 0.807487 | 4.935711e-50 | -8.615850e-47 |
| Msa1184690 | Msa1430130 | 0.805774 | 1.134711e-49 | -8.615850e-47 |
| Msa1184690 | Msa1436600 | 0.824118 | 9.595845e-54 | -8.615850e-47 |
| Msa1184690 | Msa1437730 | 0.853450 | 2.371346e-61 | -8.615850e-47 |
| Msa1184690 | Msa1442920 | 0.823186 | 1.586122e-53 | -8.615850e-47 |
| Msa1184690 | Msa1444120 | 0.831964 | 1.238098e-55 | -8.615850e-47 |
| Msa1184690 | Msa1446080 | 0.814772 | 1.299164e-51 | -8.615850e-47 |
| Msa1184690 | Msa1460320 | -0.810171 | 1.315866e-50 | -8.615850e-47 |
| Msa1184690 | Msa1460750 | 0.803798 | 2.934680e-49 | -8.615850e-47 |
| Msa0482940 | Msa1184690 | 0.829653 | 4.563701e-55 | -8.615850e-47 |
| Msa0484640 | Msa1184690 | 0.803744 | 3.011908e-49 | -8.615850e-47 |
| Msa0485240 | Msa1184690 | 0.810269 | 1.253615e-50 | -8.615850e-47 |
| Msa0491000 | Msa1184690 | 0.805414 | 1.350314e-49 | -8.615850e-47 |
| Msa0521010 | Msa1184690 | 0.853685 | 2.029697e-61 | -8.615850e-47 |
| Msa0527540 | Msa1184690 | 0.813107 | 3.026310e-51 | -8.615850e-47 |
| Msa0534870 | Msa1184690 | 0.840303 | 9.430104e-58 | -8.615850e-47 |
| Msa0542560 | Msa1184690 | 0.854142 | 1.498755e-61 | -8.615850e-47 |
| Msa0544160 | Msa1184690 | 0.825920 | 3.601889e-54 | -8.615850e-47 |
| Msa0545020 | Msa1184690 | 0.817327 | 3.493406e-52 | -8.615850e-47 |
| Msa0545050 | Msa1184690 | 0.846828 | 1.699117e-59 | -8.615850e-47 |
| Msa0547160 | Msa1184690 | 0.800888 | 1.166594e-48 | -8.615850e-47 |
| Msa0549890 | Msa1184690 | 0.856827 | 2.471959e-62 | -8.615850e-47 |
| Msa0566350 | Msa1184690 | 0.808530 | 2.960733e-50 | -8.615850e-47 |
| Msa0566750 | Msa1184690 | 0.800650 | 1.304683e-48 | -8.615850e-47 |
| Msa0587120 | Msa1184690 | 0.809331 | 1.995206e-50 | -8.615850e-47 |
| Msa0592330 | Msa1184690 | 0.815617 | 8.434655e-52 | -8.615850e-47 |
| Msa0600080 | Msa1184690 | 0.820600 | 6.296360e-53 | -8.615850e-47 |
| Msa0600590 | Msa1184690 | 0.868589 | 5.836363e-66 | -8.615850e-47 |
| Msa0844110 | Msa1184690 | 0.801643 | 8.172843e-49 | -8.615850e-47 |
| Msa0846860 | Msa1184690 | 0.829143 | 6.070537e-55 | -8.615850e-47 |
| Msa0855870 | Msa1184690 | 0.804645 | 1.955520e-49 | -8.615850e-47 |
| Msa0857940 | Msa1184690 | 0.814746 | 1.316815e-51 | -8.615850e-47 |
| Msa0861470 | Msa1184690 | 0.811267 | 7.627319e-51 | -8.615850e-47 |
| Msa0861570 | Msa1184690 | 0.804838 | 1.782477e-49 | -8.615850e-47 |
| Msa0863990 | Msa1184690 | 0.812695 | 3.725231e-51 | -8.615850e-47 |
| Msa0870510 | Msa1184690 | 0.843194 | 1.627947e-58 | -8.615850e-47 |
| Msa0878220 | Msa1184690 | 0.820000 | 8.641368e-53 | -8.615850e-47 |
| Msa0880810 | Msa1184690 | 0.828847 | 7.160921e-55 | -8.615850e-47 |
| Msa0894710 | Msa1184690 | 0.840904 | 6.566233e-58 | -8.615850e-47 |
| Msa0921420 | Msa1184690 | 0.804348 | 2.256007e-49 | -8.615850e-47 |
| Msa0943970 | Msa1184690 | 0.831929 | 1.263487e-55 | -8.615850e-47 |
| Msa0944020 | Msa1184690 | 0.839329 | 1.690881e-57 | -8.615850e-47 |
| Msa0944200 | Msa1184690 | 0.802389 | 5.742538e-49 | -8.615850e-47 |
| Msa0974950 | Msa1184690 | 0.809388 | 1.939518e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184690 | MtrunA17_Chr8g0350031 | 86.400 | 125 | 6 | 1 | 1 | 114 | 24 | 148 | 1.96e-74 | 217 |
| Msa1184690 | MtrunA17_Chr8g0350021 | 77.600 | 125 | 17 | 1 | 1 | 114 | 24 | 148 | 2.85e-68 | 201 |
| Msa1184690 | MtrunA17_Chr1g0147471 | 66.129 | 62 | 21 | 0 | 2 | 63 | 1 | 62 | 7.53e-28 | 97.1 |
| Msa1184690 | MtrunA17_Chr5g0435251 | 39.695 | 131 | 53 | 4 | 2 | 110 | 25 | 151 | 8.71e-26 | 94.4 |
| Msa1184690 | MtrunA17_Chr5g0435261 | 38.636 | 132 | 55 | 4 | 3 | 111 | 27 | 155 | 2.28e-24 | 90.9 |
| Msa1184690 | MtrunA17_Chr7g0246521 | 58.491 | 53 | 22 | 0 | 2 | 54 | 1 | 53 | 1.26e-20 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184690 | AT1G63220.1 | 46.774 | 124 | 54 | 2 | 2 | 114 | 25 | 147 | 1.35e-32 | 111 |
| Msa1184690 | AT1G63220.2 | 44.444 | 126 | 52 | 3 | 6 | 114 | 9 | 133 | 1.45e-27 | 98.6 |
| Msa1184690 | AT3G55470.2 | 32.090 | 134 | 66 | 4 | 2 | 113 | 25 | 155 | 9.83e-15 | 66.2 |
Find 21 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATAATGATGATAATAT+TGG | 0.281672 | 8_1:-20587979 | Msa1184690:CDS |
| AGAATATTGTGGAGAGATTA+AGG | 0.301540 | 8_1:-20587428 | Msa1184690:CDS |
| TGAGCTCAATCTAAAGATAA+TGG | 0.346296 | 8_1:-20588013 | Msa1184690:CDS |
| ACAAGATTGTAAGAATTCTC+TGG | 0.392769 | 8_1:+20587460 | None:intergenic |
| GCTCCTGTGCTTTGTAACTA+AGG | 0.446848 | 8_1:+20588213 | None:intergenic |
| GAAAAGTCTCATTCCATTGA+GGG | 0.461869 | 8_1:+20588061 | None:intergenic |
| CAATCTAAAGATAATGGAAA+AGG | 0.492449 | 8_1:-20588007 | Msa1184690:CDS |
| GTGCTGGATCTAACCCTCAA+TGG | 0.522113 | 8_1:-20588074 | Msa1184690:CDS |
| AGAAAAGTCTCATTCCATTG+AGG | 0.522164 | 8_1:+20588060 | None:intergenic |
| AAGAGGAGGAGACTGGTGGA+TGG | 0.524498 | 8_1:-20587259 | Msa1184690:CDS |
| TACAATGAAGAGGAGGAGAC+TGG | 0.545609 | 8_1:-20587266 | Msa1184690:CDS |
| TTGTAACTAAGGATCACATA+AGG | 0.555757 | 8_1:+20588224 | None:intergenic |
| CACAAGAGTTCTGTGCAAGA+AGG | 0.570141 | 8_1:-20588191 | Msa1184690:intron |
| GTGAAGGATGAAGAATATTG+TGG | 0.592520 | 8_1:-20587439 | Msa1184690:CDS |
| GATCCTTAGTTACAAAGCAC+AGG | 0.599886 | 8_1:-20588216 | Msa1184690:CDS |
| TGATCAGAGTTACAATGAAG+AGG | 0.605643 | 8_1:-20587276 | Msa1184690:CDS |
| GAATTCTTACAATCTTGTGA+AGG | 0.613624 | 8_1:-20587455 | Msa1184690:CDS |
| TCAGAGTTACAATGAAGAGG+AGG | 0.621822 | 8_1:-20587273 | Msa1184690:CDS |
| AATGAAGAGGAGGAGACTGG+TGG | 0.640663 | 8_1:-20587263 | Msa1184690:CDS |
| GATTGTAAGAATTCTCTGGA+AGG | 0.642476 | 8_1:+20587464 | None:intergenic |
| ATATTGTGGAGAGATTAAGG+TGG | 0.788819 | 8_1:-20587425 | Msa1184690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATGATGATAATAT+TGG | - | chr8_1:20587492-20587511 | Msa1184690:intron | 10.0% |
| !! | TATAATAATGATGATAATAT+TGG | - | chr8_1:20587492-20587511 | Msa1184690:intron | 10.0% |
| !!! | ATATTTTGATGAATAATATC+AGG | - | chr8_1:20587375-20587394 | Msa1184690:intron | 15.0% |
| !!! | ATTGATAGTACATTTTAATA+GGG | + | chr8_1:20588155-20588174 | None:intergenic | 15.0% |
| !!! | AATTGATAGTACATTTTAAT+AGG | + | chr8_1:20588156-20588175 | None:intergenic | 15.0% |
| !! | TAAAATGTACTATCAATTAT+TGG | - | chr8_1:20588158-20588177 | Msa1184690:intron | 15.0% |
| !!! | ATATTTTGATGAATAATATC+AGG | - | chr8_1:20587375-20587394 | Msa1184690:intron | 15.0% |
| !!! | ATTGATAGTACATTTTAATA+GGG | + | chr8_1:20588155-20588174 | None:intergenic | 15.0% |
| !!! | AATTGATAGTACATTTTAAT+AGG | + | chr8_1:20588156-20588175 | None:intergenic | 15.0% |
| !! | TAAAATGTACTATCAATTAT+TGG | - | chr8_1:20588158-20588177 | Msa1184690:intron | 15.0% |
| !!! | AAACATAAGTAGTATTGATT+TGG | - | chr8_1:20587315-20587334 | Msa1184690:intron | 20.0% |
| !!! | TTTTTGCTTATATTTCATTC+TGG | + | chr8_1:20587643-20587662 | None:intergenic | 20.0% |
| !! | AGAATGAAATATAAGCAAAA+AGG | - | chr8_1:20587642-20587661 | Msa1184690:intron | 20.0% |
| !! | GAATGAAATATAAACAAAAG+TGG | + | chr8_1:20587719-20587738 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTATATTTCATTC+CGG | - | chr8_1:20587719-20587738 | Msa1184690:intron | 20.0% |
| !! | GTTTAAAAATTTACACCTAA+AGG | - | chr8_1:20587798-20587817 | Msa1184690:intron | 20.0% |
| !!! | AAACATAAGTAGTATTGATT+TGG | - | chr8_1:20587315-20587334 | Msa1184690:intron | 20.0% |
| !!! | TTTTTGCTTATATTTCATTC+TGG | + | chr8_1:20587643-20587662 | None:intergenic | 20.0% |
| !! | AGAATGAAATATAAGCAAAA+AGG | - | chr8_1:20587642-20587661 | Msa1184690:intron | 20.0% |
| !! | GAATGAAATATAAACAAAAG+TGG | + | chr8_1:20587719-20587738 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTATATTTCATTC+CGG | - | chr8_1:20587719-20587738 | Msa1184690:intron | 20.0% |
| !! | GTTTAAAAATTTACACCTAA+AGG | - | chr8_1:20587798-20587817 | Msa1184690:intron | 20.0% |
| !!! | TTTGTTATTTTGTTCTCTAG+TGG | - | chr8_1:20587341-20587360 | Msa1184690:intron | 25.0% |
| !!! | CAATCTAAAGATAATGGAAA+AGG | - | chr8_1:20587464-20587483 | Msa1184690:CDS | 25.0% |
| !! | TGTCTTTGATTCATCTTTTT+AGG | - | chr8_1:20587554-20587573 | Msa1184690:intron | 25.0% |
| ! | TGAAATATAAGCAAAAAGGT+AGG | - | chr8_1:20587646-20587665 | Msa1184690:intron | 25.0% |
| ! | TAAAAATTTACACCTAAAGG+AGG | - | chr8_1:20587801-20587820 | Msa1184690:intron | 25.0% |
| ! | AAAAATTTACACCTAAAGGA+GGG | - | chr8_1:20587802-20587821 | Msa1184690:intron | 25.0% |
| !!! | TTTGTTATTTTGTTCTCTAG+TGG | - | chr8_1:20587341-20587360 | Msa1184690:intron | 25.0% |
| !!! | CAATCTAAAGATAATGGAAA+AGG | - | chr8_1:20587464-20587483 | Msa1184690:CDS | 25.0% |
| !! | TGTCTTTGATTCATCTTTTT+AGG | - | chr8_1:20587554-20587573 | Msa1184690:intron | 25.0% |
| ! | TGAAATATAAGCAAAAAGGT+AGG | - | chr8_1:20587646-20587665 | Msa1184690:intron | 25.0% |
| ! | TAAAAATTTACACCTAAAGG+AGG | - | chr8_1:20587801-20587820 | Msa1184690:intron | 25.0% |
| ! | AAAAATTTACACCTAAAGGA+GGG | - | chr8_1:20587802-20587821 | Msa1184690:intron | 25.0% |
| TTGTAACTAAGGATCACATA+AGG | + | chr8_1:20587250-20587269 | None:intergenic | 30.0% | |
| TGAGCTCAATCTAAAGATAA+TGG | - | chr8_1:20587458-20587477 | Msa1184690:CDS | 30.0% | |
| TTGCTTATATTTCATTCTGG+AGG | + | chr8_1:20587640-20587659 | None:intergenic | 30.0% | |
| ACTTTAACACTTACTTTCTC+CGG | + | chr8_1:20587741-20587760 | None:intergenic | 30.0% | |
| GAGAAAGTAAGTGTTAAAGT+TGG | - | chr8_1:20587741-20587760 | Msa1184690:intron | 30.0% | |
| GTTGGATTCTCATTGAAAAT+TGG | - | chr8_1:20587759-20587778 | Msa1184690:intron | 30.0% | |
| GTTTGACTATGTAACTTCAA+AGG | + | chr8_1:20587892-20587911 | None:intergenic | 30.0% | |
| ACAAGATTGTAAGAATTCTC+TGG | + | chr8_1:20588014-20588033 | None:intergenic | 30.0% | |
| GAATTCTTACAATCTTGTGA+AGG | - | chr8_1:20588016-20588035 | Msa1184690:CDS | 30.0% | |
| AGAATATTGTGGAGAGATTA+AGG | - | chr8_1:20588043-20588062 | Msa1184690:CDS | 30.0% | |
| !! | TTATATAGCCTTATTACCTC+AGG | + | chr8_1:20588086-20588105 | None:intergenic | 30.0% |
| TTGTAACTAAGGATCACATA+AGG | + | chr8_1:20587250-20587269 | None:intergenic | 30.0% | |
| TGAGCTCAATCTAAAGATAA+TGG | - | chr8_1:20587458-20587477 | Msa1184690:CDS | 30.0% | |
| TTGCTTATATTTCATTCTGG+AGG | + | chr8_1:20587640-20587659 | None:intergenic | 30.0% | |
| ACTTTAACACTTACTTTCTC+CGG | + | chr8_1:20587741-20587760 | None:intergenic | 30.0% | |
| GAGAAAGTAAGTGTTAAAGT+TGG | - | chr8_1:20587741-20587760 | Msa1184690:intron | 30.0% | |
| GTTGGATTCTCATTGAAAAT+TGG | - | chr8_1:20587759-20587778 | Msa1184690:intron | 30.0% | |
| GTTTGACTATGTAACTTCAA+AGG | + | chr8_1:20587892-20587911 | None:intergenic | 30.0% | |
| ACAAGATTGTAAGAATTCTC+TGG | + | chr8_1:20588014-20588033 | None:intergenic | 30.0% | |
| GAATTCTTACAATCTTGTGA+AGG | - | chr8_1:20588016-20588035 | Msa1184690:CDS | 30.0% | |
| AGAATATTGTGGAGAGATTA+AGG | - | chr8_1:20588043-20588062 | Msa1184690:CDS | 30.0% | |
| !! | TTATATAGCCTTATTACCTC+AGG | + | chr8_1:20588086-20588105 | None:intergenic | 30.0% |
| TGATGAATAATATCAGGTGC+TGG | - | chr8_1:20587381-20587400 | Msa1184690:intron | 35.0% | |
| GAAAAGTCTCATTCCATTGA+GGG | + | chr8_1:20587413-20587432 | None:intergenic | 35.0% | |
| AGAAAAGTCTCATTCCATTG+AGG | + | chr8_1:20587414-20587433 | None:intergenic | 35.0% | |
| AAAATTGAACGAGATGTCAG+TGG | + | chr8_1:20587920-20587939 | None:intergenic | 35.0% | |
| TCTTCAAACACTGCTTCTAA+AGG | + | chr8_1:20587981-20588000 | None:intergenic | 35.0% | |
| TTTAGAAGCAGTGTTTGAAG+AGG | - | chr8_1:20587980-20587999 | Msa1184690:CDS | 35.0% | |
| TTAGAAGCAGTGTTTGAAGA+GGG | - | chr8_1:20587981-20588000 | Msa1184690:CDS | 35.0% | |
| GATTGTAAGAATTCTCTGGA+AGG | + | chr8_1:20588010-20588029 | None:intergenic | 35.0% | |
| GTGAAGGATGAAGAATATTG+TGG | - | chr8_1:20588032-20588051 | Msa1184690:CDS | 35.0% | |
| ATATTGTGGAGAGATTAAGG+TGG | - | chr8_1:20588046-20588065 | Msa1184690:CDS | 35.0% | |
| ! | CTTTTACACCTGAGGTAATA+AGG | - | chr8_1:20588075-20588094 | Msa1184690:CDS | 35.0% |
| TGATCAGAGTTACAATGAAG+AGG | - | chr8_1:20588195-20588214 | Msa1184690:CDS | 35.0% | |
| TGATGAATAATATCAGGTGC+TGG | - | chr8_1:20587381-20587400 | Msa1184690:intron | 35.0% | |
| GAAAAGTCTCATTCCATTGA+GGG | + | chr8_1:20587413-20587432 | None:intergenic | 35.0% | |
| AGAAAAGTCTCATTCCATTG+AGG | + | chr8_1:20587414-20587433 | None:intergenic | 35.0% | |
| AAAATTGAACGAGATGTCAG+TGG | + | chr8_1:20587920-20587939 | None:intergenic | 35.0% | |
| TCTTCAAACACTGCTTCTAA+AGG | + | chr8_1:20587981-20588000 | None:intergenic | 35.0% | |
| TTTAGAAGCAGTGTTTGAAG+AGG | - | chr8_1:20587980-20587999 | Msa1184690:CDS | 35.0% | |
| TTAGAAGCAGTGTTTGAAGA+GGG | - | chr8_1:20587981-20588000 | Msa1184690:CDS | 35.0% | |
| GATTGTAAGAATTCTCTGGA+AGG | + | chr8_1:20588010-20588029 | None:intergenic | 35.0% | |
| GTGAAGGATGAAGAATATTG+TGG | - | chr8_1:20588032-20588051 | Msa1184690:CDS | 35.0% | |
| ATATTGTGGAGAGATTAAGG+TGG | - | chr8_1:20588046-20588065 | Msa1184690:CDS | 35.0% | |
| ! | CTTTTACACCTGAGGTAATA+AGG | - | chr8_1:20588075-20588094 | Msa1184690:CDS | 35.0% |
| TGATCAGAGTTACAATGAAG+AGG | - | chr8_1:20588195-20588214 | Msa1184690:CDS | 35.0% | |
| GATCCTTAGTTACAAAGCAC+AGG | - | chr8_1:20587255-20587274 | Msa1184690:CDS | 40.0% | |
| TCAGAGTTACAATGAAGAGG+AGG | - | chr8_1:20588198-20588217 | Msa1184690:CDS | 40.0% | |
| GATCCTTAGTTACAAAGCAC+AGG | - | chr8_1:20587255-20587274 | Msa1184690:CDS | 40.0% | |
| TCAGAGTTACAATGAAGAGG+AGG | - | chr8_1:20588198-20588217 | Msa1184690:CDS | 40.0% | |
| GCTCCTGTGCTTTGTAACTA+AGG | + | chr8_1:20587261-20587280 | None:intergenic | 45.0% | |
| CACAAGAGTTCTGTGCAAGA+AGG | - | chr8_1:20587280-20587299 | Msa1184690:CDS | 45.0% | |
| AGTTGCAAAGTCGACGTATG+TGG | + | chr8_1:20587695-20587714 | None:intergenic | 45.0% | |
| TTTCCTTTGTGCCCTCCTTT+AGG | + | chr8_1:20587816-20587835 | None:intergenic | 45.0% | |
| TACAATGAAGAGGAGGAGAC+TGG | - | chr8_1:20588205-20588224 | Msa1184690:CDS | 45.0% | |
| GCTCCTGTGCTTTGTAACTA+AGG | + | chr8_1:20587261-20587280 | None:intergenic | 45.0% | |
| CACAAGAGTTCTGTGCAAGA+AGG | - | chr8_1:20587280-20587299 | Msa1184690:CDS | 45.0% | |
| AGTTGCAAAGTCGACGTATG+TGG | + | chr8_1:20587695-20587714 | None:intergenic | 45.0% | |
| TTTCCTTTGTGCCCTCCTTT+AGG | + | chr8_1:20587816-20587835 | None:intergenic | 45.0% | |
| TACAATGAAGAGGAGGAGAC+TGG | - | chr8_1:20588205-20588224 | Msa1184690:CDS | 45.0% | |
| GTGCTGGATCTAACCCTCAA+TGG | - | chr8_1:20587397-20587416 | Msa1184690:intron | 50.0% | |
| ! | ACACCTAAAGGAGGGCACAA+AGG | - | chr8_1:20587810-20587829 | Msa1184690:intron | 50.0% |
| !! | GGCTCTCACTTTTACACCTG+AGG | - | chr8_1:20588067-20588086 | Msa1184690:CDS | 50.0% |
| AATGAAGAGGAGGAGACTGG+TGG | - | chr8_1:20588208-20588227 | Msa1184690:CDS | 50.0% | |
| GTGCTGGATCTAACCCTCAA+TGG | - | chr8_1:20587397-20587416 | Msa1184690:intron | 50.0% | |
| ! | ACACCTAAAGGAGGGCACAA+AGG | - | chr8_1:20587810-20587829 | Msa1184690:intron | 50.0% |
| !! | GGCTCTCACTTTTACACCTG+AGG | - | chr8_1:20588067-20588086 | Msa1184690:CDS | 50.0% |
| AATGAAGAGGAGGAGACTGG+TGG | - | chr8_1:20588208-20588227 | Msa1184690:CDS | 50.0% | |
| AAGAGGAGGAGACTGGTGGA+TGG | - | chr8_1:20588212-20588231 | Msa1184690:CDS | 55.0% | |
| AAGAGGAGGAGACTGGTGGA+TGG | - | chr8_1:20588212-20588231 | Msa1184690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 20587238 | 20588255 | 20587238 | ID=Msa1184690;Name=Msa1184690 |
| chr8_1 | mRNA | 20587238 | 20588255 | 20587238 | ID=Msa1184690-mRNA-1;Parent=Msa1184690;Name=Msa1184690-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0.66|0.25|4|0|114 |
| chr8_1 | exon | 20588192 | 20588255 | 20588192 | ID=Msa1184690-mRNA-1:exon:7920;Parent=Msa1184690-mRNA-1 |
| chr8_1 | exon | 20587970 | 20588096 | 20587970 | ID=Msa1184690-mRNA-1:exon:7919;Parent=Msa1184690-mRNA-1 |
| chr8_1 | exon | 20587405 | 20587486 | 20587405 | ID=Msa1184690-mRNA-1:exon:7918;Parent=Msa1184690-mRNA-1 |
| chr8_1 | exon | 20587238 | 20587306 | 20587238 | ID=Msa1184690-mRNA-1:exon:7917;Parent=Msa1184690-mRNA-1 |
| chr8_1 | CDS | 20588192 | 20588255 | 20588192 | ID=Msa1184690-mRNA-1:cds;Parent=Msa1184690-mRNA-1 |
| chr8_1 | CDS | 20587970 | 20588096 | 20587970 | ID=Msa1184690-mRNA-1:cds;Parent=Msa1184690-mRNA-1 |
| chr8_1 | CDS | 20587405 | 20587486 | 20587405 | ID=Msa1184690-mRNA-1:cds;Parent=Msa1184690-mRNA-1 |
| chr8_1 | CDS | 20587238 | 20587306 | 20587238 | ID=Msa1184690-mRNA-1:cds;Parent=Msa1184690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
