Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052360 | XP_003589076.2 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052360 | sp|Q9FHS6|FK119_ARATH | 50.802 | 374 | 163 | 5 | 16 | 381 | 43 | 403 | 3.92e-109 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052360 | A0A396JG55 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0052360 | 0.812303 | 4.537249e-51 | -8.615850e-47 |
| Msa0026630 | Msa0052360 | 0.812929 | 3.309952e-51 | -8.615850e-47 |
| Msa0043850 | Msa0052360 | 0.811915 | 5.513041e-51 | -8.615850e-47 |
| Msa0052360 | Msa0061220 | 0.806257 | 8.982931e-50 | -8.615850e-47 |
| Msa0052360 | Msa0061500 | 0.815599 | 8.510531e-52 | -8.615850e-47 |
| Msa0052360 | Msa0077370 | 0.804438 | 2.160307e-49 | -8.615850e-47 |
| Msa0052360 | Msa0082420 | 0.832049 | 1.180150e-55 | -8.615850e-47 |
| Msa0052360 | Msa0090510 | 0.848029 | 7.950135e-60 | -8.615850e-47 |
| Msa0052360 | Msa0094710 | 0.818418 | 1.980286e-52 | -8.615850e-47 |
| Msa0052360 | Msa0097370 | 0.985116 | 1.412105e-162 | -8.615850e-47 |
| Msa0052360 | Msa0117520 | 0.823176 | 1.595002e-53 | -8.615850e-47 |
| Msa0052360 | Msa0136630 | 0.827699 | 1.354496e-54 | -8.615850e-47 |
| Msa0052360 | Msa0152560 | 0.843022 | 1.809122e-58 | -8.615850e-47 |
| Msa0052360 | Msa0160960 | 0.832045 | 1.182761e-55 | -8.615850e-47 |
| Msa0052360 | Msa0183910 | 0.830231 | 3.299602e-55 | -8.615850e-47 |
| Msa0052360 | Msa0187310 | 0.840886 | 6.637728e-58 | -8.615850e-47 |
| Msa0052360 | Msa0194920 | 0.810388 | 1.181398e-50 | -8.615850e-47 |
| Msa0052360 | Msa0217700 | 0.802814 | 4.692387e-49 | -8.615850e-47 |
| Msa0052360 | Msa0224130 | 0.837074 | 6.439883e-57 | -8.615850e-47 |
| Msa0052360 | Msa0265270 | 0.836113 | 1.131647e-56 | -8.615850e-47 |
| Msa0052360 | Msa0278580 | 0.803646 | 3.156514e-49 | -8.615850e-47 |
| Msa0052360 | Msa0302730 | 0.800542 | 1.372506e-48 | -8.615850e-47 |
| Msa0052360 | Msa0364790 | 0.806328 | 8.676527e-50 | -8.615850e-47 |
| Msa0052360 | Msa0374890 | 0.812900 | 3.360011e-51 | -8.615850e-47 |
| Msa0052360 | Msa0375070 | 0.805866 | 1.085184e-49 | -8.615850e-47 |
| Msa0052360 | Msa0380600 | 0.805434 | 1.337254e-49 | -8.615850e-47 |
| Msa0052360 | Msa0382370 | 0.815389 | 9.479223e-52 | -8.615850e-47 |
| Msa0052360 | Msa0388730 | 0.832522 | 9.009647e-56 | -8.615850e-47 |
| Msa0052360 | Msa0430240 | 0.800819 | 1.205103e-48 | -8.615850e-47 |
| Msa0052360 | Msa0432160 | 0.822531 | 2.253811e-53 | -8.615850e-47 |
| Msa0052360 | Msa0470880 | 0.824001 | 1.022539e-53 | -8.615850e-47 |
| Msa0052360 | Msa0476680 | 0.826646 | 2.419854e-54 | -8.615850e-47 |
| Msa0052360 | Msa0484800 | 0.805344 | 1.396632e-49 | -8.615850e-47 |
| Msa0052360 | Msa0521010 | 0.825355 | 4.904340e-54 | -8.615850e-47 |
| Msa0052360 | Msa0534870 | 0.809669 | 1.688000e-50 | -8.615850e-47 |
| Msa0052360 | Msa0545020 | 0.841165 | 5.606509e-58 | -8.615850e-47 |
| Msa0052360 | Msa0545050 | 0.855113 | 7.845669e-62 | -8.615850e-47 |
| Msa0052360 | Msa0567370 | 0.805418 | 1.347553e-49 | -8.615850e-47 |
| Msa0052360 | Msa0581400 | 0.806353 | 8.573684e-50 | -8.615850e-47 |
| Msa0052360 | Msa0592330 | 0.834622 | 2.693859e-56 | -8.615850e-47 |
| Msa0052360 | Msa0600590 | 0.855431 | 6.336883e-62 | -8.615850e-47 |
| Msa0052360 | Msa0613340 | 0.816258 | 6.066702e-52 | -8.615850e-47 |
| Msa0052360 | Msa0631320 | 0.800806 | 1.212304e-48 | -8.615850e-47 |
| Msa0052360 | Msa0641130 | 0.850891 | 1.266356e-60 | -8.615850e-47 |
| Msa0052360 | Msa0651560 | 0.804549 | 2.048127e-49 | -8.615850e-47 |
| Msa0052360 | Msa0653670 | 0.821583 | 3.738851e-53 | -8.615850e-47 |
| Msa0052360 | Msa0679670 | 0.826222 | 3.054011e-54 | -8.615850e-47 |
| Msa0052360 | Msa0697680 | 0.810643 | 1.040968e-50 | -8.615850e-47 |
| Msa0052360 | Msa0698460 | 0.802997 | 4.300937e-49 | -8.615850e-47 |
| Msa0052360 | Msa0703810 | 0.810760 | 9.820424e-51 | -8.615850e-47 |
| Msa0052360 | Msa0744640 | 0.804786 | 1.827728e-49 | -8.615850e-47 |
| Msa0052360 | Msa0769720 | 0.807720 | 4.403011e-50 | -8.615850e-47 |
| Msa0052360 | Msa0771950 | 0.805877 | 1.079714e-49 | -8.615850e-47 |
| Msa0052360 | Msa0802240 | 0.808499 | 3.004968e-50 | -8.615850e-47 |
| Msa0052360 | Msa0823540 | 0.805819 | 1.110158e-49 | -8.615850e-47 |
| Msa0052360 | Msa0841730 | 0.805827 | 1.106333e-49 | -8.615850e-47 |
| Msa0052360 | Msa0880810 | 0.815594 | 8.533564e-52 | -8.615850e-47 |
| Msa0052360 | Msa0910620 | 0.812686 | 3.741483e-51 | -8.615850e-47 |
| Msa0052360 | Msa0965080 | 0.803137 | 4.024087e-49 | -8.615850e-47 |
| Msa0052360 | Msa0965290 | 0.814886 | 1.225702e-51 | -8.615850e-47 |
| Msa0052360 | Msa0985180 | 0.828377 | 9.301008e-55 | -8.615850e-47 |
| Msa0052360 | Msa0994910 | 0.807864 | 4.104010e-50 | -8.615850e-47 |
| Msa0052360 | Msa0999680 | 0.813478 | 2.508433e-51 | -8.615850e-47 |
| Msa0052360 | Msa1011250 | 0.818144 | 2.285030e-52 | -8.615850e-47 |
| Msa0052360 | Msa1024680 | 0.804439 | 2.158995e-49 | -8.615850e-47 |
| Msa0052360 | Msa1031460 | 0.802368 | 5.798130e-49 | -8.615850e-47 |
| Msa0052360 | Msa1044510 | 0.850182 | 2.003304e-60 | -8.615850e-47 |
| Msa0052360 | Msa1062040 | 0.839118 | 1.918248e-57 | -8.615850e-47 |
| Msa0052360 | Msa1063360 | 0.854842 | 9.403293e-62 | -8.615850e-47 |
| Msa0052360 | Msa1070540 | 0.823672 | 1.221122e-53 | -8.615850e-47 |
| Msa0052360 | Msa1089190 | 0.821433 | 4.049096e-53 | -8.615850e-47 |
| Msa0052360 | Msa1096070 | 0.802682 | 4.995933e-49 | -8.615850e-47 |
| Msa0052360 | Msa1101240 | 0.817505 | 3.184965e-52 | -8.615850e-47 |
| Msa0052360 | Msa1107200 | 0.834903 | 2.290198e-56 | -8.615850e-47 |
| Msa0052360 | Msa1108710 | 0.834227 | 3.384986e-56 | -8.615850e-47 |
| Msa0052360 | Msa1122150 | 0.803880 | 2.822223e-49 | -8.615850e-47 |
| Msa0052360 | Msa1150780 | 0.822999 | 1.753782e-53 | -8.615850e-47 |
| Msa0052360 | Msa1160560 | 0.800250 | 1.574062e-48 | -8.615850e-47 |
| Msa0052360 | Msa1171140 | 0.818578 | 1.821648e-52 | -8.615850e-47 |
| Msa0052360 | Msa1175200 | 0.800149 | 1.650144e-48 | -8.615850e-47 |
| Msa0052360 | Msa1180720 | 0.805350 | 1.392769e-49 | -8.615850e-47 |
| Msa0052360 | Msa1183140 | 0.804048 | 2.604240e-49 | -8.615850e-47 |
| Msa0052360 | Msa1188350 | 0.812409 | 4.302156e-51 | -8.615850e-47 |
| Msa0052360 | Msa1208110 | 0.800002 | 1.767998e-48 | -8.615850e-47 |
| Msa0052360 | Msa1208990 | 0.825874 | 3.694618e-54 | -8.615850e-47 |
| Msa0052360 | Msa1218580 | 0.814442 | 1.537794e-51 | -8.615850e-47 |
| Msa0052360 | Msa1221330 | 0.804566 | 2.031588e-49 | -8.615850e-47 |
| Msa0052360 | Msa1229480 | 0.801453 | 8.938705e-49 | -8.615850e-47 |
| Msa0052360 | Msa1231710 | 0.806568 | 7.722194e-50 | -8.615850e-47 |
| Msa0052360 | Msa1236440 | 0.801986 | 6.951183e-49 | -8.615850e-47 |
| Msa0052360 | Msa1256330 | 0.815453 | 9.172378e-52 | -8.615850e-47 |
| Msa0052360 | Msa1260060 | 0.811095 | 8.309836e-51 | -8.615850e-47 |
| Msa0052360 | Msa1272010 | 0.801981 | 6.967278e-49 | -8.615850e-47 |
| Msa0052360 | Msa1277780 | 0.804346 | 2.257937e-49 | -8.615850e-47 |
| Msa0052360 | Msa1280170 | 0.803403 | 3.544511e-49 | -8.615850e-47 |
| Msa0052360 | Msa1296520 | 0.801156 | 1.028611e-48 | -8.615850e-47 |
| Msa0052360 | Msa1307180 | 0.805405 | 1.356013e-49 | -8.615850e-47 |
| Msa0052360 | Msa1309760 | 0.800074 | 1.708996e-48 | -8.615850e-47 |
| Msa0052360 | Msa1312440 | 0.816872 | 4.421151e-52 | -8.615850e-47 |
| Msa0052360 | Msa1316360 | 0.804947 | 1.691383e-49 | -8.615850e-47 |
| Msa0052360 | Msa1316460 | 0.803671 | 3.119418e-49 | -8.615850e-47 |
| Msa0052360 | Msa1325410 | -0.801504 | 8.725930e-49 | -8.615850e-47 |
| Msa0052360 | Msa1364080 | 0.831467 | 1.642403e-55 | -8.615850e-47 |
| Msa0052360 | Msa1369920 | -0.835690 | 1.448855e-56 | -8.615850e-47 |
| Msa0052360 | Msa1370420 | 0.800253 | 1.571583e-48 | -8.615850e-47 |
| Msa0052360 | Msa1400930 | 0.809323 | 2.002956e-50 | -8.615850e-47 |
| Msa0052360 | Msa1402350 | 0.801282 | 9.689734e-49 | -8.615850e-47 |
| Msa0052360 | Msa1407760 | 0.834862 | 2.344559e-56 | -8.615850e-47 |
| Msa0052360 | Msa1407880 | 0.803208 | 3.890989e-49 | -8.615850e-47 |
| Msa0052360 | Msa1418970 | 0.945729 | 1.767287e-104 | -8.615850e-47 |
| Msa0052360 | Msa1419840 | 0.828440 | 8.981132e-55 | -8.615850e-47 |
| Msa0052360 | Msa1436600 | 0.809553 | 1.787638e-50 | -8.615850e-47 |
| Msa0052360 | Msa1437730 | 0.838267 | 3.183162e-57 | -8.615850e-47 |
| Msa0052360 | Msa1450440 | 0.824847 | 6.465374e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052360 | MtrunA17_Chr1g0152611 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Msa0052360 | MtrunA17_Chr7g0220421 | 26.536 | 358 | 230 | 11 | 5 | 354 | 82 | 414 | 3.07e-21 | 94.7 |
| Msa0052360 | MtrunA17_Chr3g0122401 | 22.881 | 354 | 237 | 12 | 16 | 357 | 111 | 440 | 3.16e-18 | 85.9 |
| Msa0052360 | MtrunA17_Chr4g0052791 | 26.119 | 402 | 235 | 15 | 16 | 381 | 55 | 430 | 4.34e-17 | 82.4 |
| Msa0052360 | MtrunA17_Chr8g0347881 | 24.093 | 386 | 232 | 18 | 24 | 377 | 44 | 400 | 7.50e-13 | 69.3 |
| Msa0052360 | MtrunA17_Chr1g0161871 | 24.324 | 296 | 180 | 11 | 16 | 293 | 24 | 293 | 9.66e-13 | 68.9 |
| Msa0052360 | MtrunA17_Chr8g0347851 | 24.282 | 383 | 230 | 20 | 24 | 377 | 44 | 395 | 8.56e-12 | 66.2 |
| Msa0052360 | MtrunA17_Chr4g0003651 | 23.858 | 394 | 208 | 20 | 20 | 363 | 1 | 352 | 5.62e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052360 | AT5G43190.1 | 50.802 | 374 | 163 | 5 | 16 | 381 | 43 | 403 | 3.98e-110 | 328 |
| Msa0052360 | AT5G15710.1 | 26.062 | 353 | 236 | 10 | 11 | 357 | 94 | 427 | 6.90e-25 | 105 |
| Msa0052360 | AT5G15710.2 | 26.062 | 353 | 236 | 10 | 11 | 357 | 94 | 427 | 6.90e-25 | 105 |
| Msa0052360 | AT1G27340.1 | 24.523 | 367 | 234 | 13 | 7 | 357 | 103 | 442 | 4.82e-19 | 89.0 |
Find 58 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAATTTGCTCCAAATATT+TGG | 0.127540 | 1_2:-6592429 | None:intergenic |
| CAACAAGGCGTTTACTTTAA+AGG | 0.179983 | 1_2:+6593011 | Msa0052360:CDS |
| TTCCAATGGATCCAAATATT+TGG | 0.191017 | 1_2:+6592418 | Msa0052360:CDS |
| TTCACTACTCTTGTTTCTTC+TGG | 0.199496 | 1_2:+6592729 | Msa0052360:CDS |
| TGGAAGAAATTCAATGGTTT+TGG | 0.238628 | 1_2:+6592963 | Msa0052360:CDS |
| TCAAAATACACAACAGAAAA+TGG | 0.244990 | 1_2:-6593059 | None:intergenic |
| TTGATTTGCAGAGTGGAAAA+TGG | 0.245802 | 1_2:+6593078 | Msa0052360:CDS |
| TCAATGTGAATATTGAAATT+TGG | 0.282093 | 1_2:-6592837 | None:intergenic |
| AGGATGTATTCAAGAATTTC+AGG | 0.295437 | 1_2:-6592453 | None:intergenic |
| ATGAATCAAGCTCAAAGATT+TGG | 0.301695 | 1_2:+6592943 | Msa0052360:CDS |
| AGTAAGAGAAAAGAAGAAAA+AGG | 0.302452 | 1_2:-6592600 | None:intergenic |
| AACAAGGCGTTTACTTTAAA+GGG | 0.310157 | 1_2:+6593012 | Msa0052360:CDS |
| AAATGAGTGAAGAAGGAAAT+TGG | 0.316705 | 1_2:+6593246 | Msa0052360:CDS |
| CCTCTCTATGATTGCAACCT+TGG | 0.347354 | 1_2:+6592651 | Msa0052360:CDS |
| CTAACAAAAGTGAGTTGTTC+AGG | 0.365596 | 1_2:-6593122 | None:intergenic |
| TGAGGATTATCACTTAGAAT+TGG | 0.376949 | 1_2:-6592987 | None:intergenic |
| CTCCAAATATTTGGATCCAT+TGG | 0.381259 | 1_2:-6592420 | None:intergenic |
| GAACTTGGCATTGGCTTCCT+AGG | 0.388345 | 1_2:+6593423 | Msa0052360:CDS |
| TTCAAGGAGTATTAAATTGT+GGG | 0.389256 | 1_2:+6593223 | Msa0052360:CDS |
| TGATTTGCAGAGTGGAAAAT+GGG | 0.399064 | 1_2:+6593079 | Msa0052360:CDS |
| ATTGGTGGGGTTGGGAGCAA+TGG | 0.400554 | 1_2:+6593197 | Msa0052360:CDS |
| GGAAAGTGACGGTGGAATTG+AGG | 0.421377 | 1_2:-6592630 | None:intergenic |
| TGGATATTGAATCTTTCTCT+TGG | 0.423695 | 1_2:-6592817 | None:intergenic |
| ACATTTGTTACAACACCAAA+AGG | 0.424367 | 1_2:+6592867 | Msa0052360:CDS |
| ACCAAATAATACAAAATCTC+TGG | 0.431057 | 1_2:-6593392 | None:intergenic |
| TTTCAAGGAGTATTAAATTG+TGG | 0.434624 | 1_2:+6593222 | Msa0052360:CDS |
| TACACAACAGAAAATGGTTC+TGG | 0.435903 | 1_2:-6593053 | None:intergenic |
| CAAACTTCAGCATACAACTT+AGG | 0.436734 | 1_2:-6593500 | None:intergenic |
| GAAAGTGACGGTGGAATTGA+GGG | 0.445405 | 1_2:-6592629 | None:intergenic |
| AAGATTTGGAAGAAATTCAA+TGG | 0.448212 | 1_2:+6592957 | Msa0052360:CDS |
| TGTTCAGGTAAATTAGCAAT+TGG | 0.452549 | 1_2:-6593107 | None:intergenic |
| TTTGTATTTGTTGTTATACT+TGG | 0.460439 | 1_2:+6593369 | Msa0052360:CDS |
| GAAACAAGAGTAGTGAAAGA+AGG | 0.482207 | 1_2:-6592723 | None:intergenic |
| ACTACTCTTGTTTCTTCTGG+TGG | 0.490392 | 1_2:+6592732 | Msa0052360:CDS |
| TTGTGGGAAATGAGTGAAGA+AGG | 0.500793 | 1_2:+6593239 | Msa0052360:CDS |
| CTACATTTGAAAGGCAAAGA+AGG | 0.506052 | 1_2:-6593449 | None:intergenic |
| ATTTGGTTTCTAGAAGAACT+TGG | 0.507365 | 1_2:+6593408 | Msa0052360:CDS |
| TTGCCTTTCAAATGTAGCTG+TGG | 0.517342 | 1_2:+6593455 | Msa0052360:CDS |
| TTGGGAGCAATGGAATTTCA+AGG | 0.520457 | 1_2:+6593207 | Msa0052360:CDS |
| AAGTAAACGCCTTGTTGATG+AGG | 0.522009 | 1_2:-6593005 | None:intergenic |
| AATGAAGGAGAGAAAATCAA+TGG | 0.526398 | 1_2:-6592534 | None:intergenic |
| TTTCTAGAAGAACTTGGCAT+TGG | 0.527075 | 1_2:+6593414 | Msa0052360:CDS |
| CAATCTTAAATCACTTCCAA+TGG | 0.529406 | 1_2:+6592404 | Msa0052360:CDS |
| AAACCACAGCTACATTTGAA+AGG | 0.547126 | 1_2:-6593458 | None:intergenic |
| TCTCTAAGATCAACTTGCAA+AGG | 0.552005 | 1_2:+6592504 | Msa0052360:CDS |
| AAATATTACGCCATGTTCCA+AGG | 0.553994 | 1_2:-6592668 | None:intergenic |
| CATTTGTTACAACACCAAAA+GGG | 0.556102 | 1_2:+6592868 | Msa0052360:CDS |
| AATGATGATGCTGTTGAAGA+AGG | 0.574036 | 1_2:+6593158 | Msa0052360:CDS |
| ATGATTGCAACCTTGGAACA+TGG | 0.574086 | 1_2:+6592658 | Msa0052360:CDS |
| GAAGAAGATGAAGATGATGA+AGG | 0.579340 | 1_2:-6592573 | None:intergenic |
| AATTTCCTACACATAAGATC+AGG | 0.581580 | 1_2:-6593287 | None:intergenic |
| GTTTGCCTGATCTTATGTGT+AGG | 0.598013 | 1_2:+6593282 | Msa0052360:CDS |
| CCAAGGTTGCAATCATAGAG+AGG | 0.624704 | 1_2:-6592651 | None:intergenic |
| AAAGGCAAAGAAGGACACCT+AGG | 0.645464 | 1_2:-6593440 | None:intergenic |
| CATAGAGAGGAAAGTGACGG+TGG | 0.658591 | 1_2:-6592638 | None:intergenic |
| AGTGATAATCCTCATCAACA+AGG | 0.667224 | 1_2:+6592996 | Msa0052360:CDS |
| ATGTATTCAAGAATTTCAGG+TGG | 0.686194 | 1_2:-6592450 | None:intergenic |
| AATCATAGAGAGGAAAGTGA+CGG | 0.700567 | 1_2:-6592641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATGTGAATATTGAAATT+TGG | - | chr1_2:6592840-6592859 | None:intergenic | 20.0% |
| !!! | TTTGTATTTGTTGTTATACT+TGG | + | chr1_2:6593369-6593388 | Msa0052360:CDS | 20.0% |
| !! | TCAATGTGAATATTGAAATT+TGG | - | chr1_2:6592840-6592859 | None:intergenic | 20.0% |
| !!! | TTTGTATTTGTTGTTATACT+TGG | + | chr1_2:6593369-6593388 | Msa0052360:CDS | 20.0% |
| !!! | GAATGTTTTGAAATGAATGA+AGG | - | chr1_2:6592552-6592571 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAGAAGAAAA+AGG | - | chr1_2:6592603-6592622 | None:intergenic | 25.0% |
| !! | ACAAAAATGATATACCCTTT+TGG | - | chr1_2:6592885-6592904 | None:intergenic | 25.0% |
| ! | AAGATTTGGAAGAAATTCAA+TGG | + | chr1_2:6592957-6592976 | Msa0052360:CDS | 25.0% |
| ! | TCAAAATACACAACAGAAAA+TGG | - | chr1_2:6593062-6593081 | None:intergenic | 25.0% |
| !!! | GGTAAAAAACTGTTTTTGAT+TGG | + | chr1_2:6593179-6593198 | Msa0052360:CDS | 25.0% |
| !!! | AAAAAACTGTTTTTGATTGG+TGG | + | chr1_2:6593182-6593201 | Msa0052360:CDS | 25.0% |
| !!! | AAAAACTGTTTTTGATTGGT+GGG | + | chr1_2:6593183-6593202 | Msa0052360:CDS | 25.0% |
| !!! | TTTCAAGGAGTATTAAATTG+TGG | + | chr1_2:6593222-6593241 | Msa0052360:CDS | 25.0% |
| !!! | TTCAAGGAGTATTAAATTGT+GGG | + | chr1_2:6593223-6593242 | Msa0052360:CDS | 25.0% |
| !! | ATGAGCATGTTTATTGTTTT+TGG | + | chr1_2:6593333-6593352 | Msa0052360:CDS | 25.0% |
| ! | ACCAAATAATACAAAATCTC+TGG | - | chr1_2:6593395-6593414 | None:intergenic | 25.0% |
| !!! | GAATGTTTTGAAATGAATGA+AGG | - | chr1_2:6592552-6592571 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAGAAGAAAA+AGG | - | chr1_2:6592603-6592622 | None:intergenic | 25.0% |
| !! | ACAAAAATGATATACCCTTT+TGG | - | chr1_2:6592885-6592904 | None:intergenic | 25.0% |
| ! | AAGATTTGGAAGAAATTCAA+TGG | + | chr1_2:6592957-6592976 | Msa0052360:CDS | 25.0% |
| ! | TCAAAATACACAACAGAAAA+TGG | - | chr1_2:6593062-6593081 | None:intergenic | 25.0% |
| !!! | GGTAAAAAACTGTTTTTGAT+TGG | + | chr1_2:6593179-6593198 | Msa0052360:CDS | 25.0% |
| !!! | AAAAAACTGTTTTTGATTGG+TGG | + | chr1_2:6593182-6593201 | Msa0052360:CDS | 25.0% |
| !!! | AAAAACTGTTTTTGATTGGT+GGG | + | chr1_2:6593183-6593202 | Msa0052360:CDS | 25.0% |
| !!! | TTTCAAGGAGTATTAAATTG+TGG | + | chr1_2:6593222-6593241 | Msa0052360:CDS | 25.0% |
| !!! | TTCAAGGAGTATTAAATTGT+GGG | + | chr1_2:6593223-6593242 | Msa0052360:CDS | 25.0% |
| !! | ATGAGCATGTTTATTGTTTT+TGG | + | chr1_2:6593333-6593352 | Msa0052360:CDS | 25.0% |
| ! | ACCAAATAATACAAAATCTC+TGG | - | chr1_2:6593395-6593414 | None:intergenic | 25.0% |
| CAATCTTAAATCACTTCCAA+TGG | + | chr1_2:6592404-6592423 | Msa0052360:CDS | 30.0% | |
| TTCCAATGGATCCAAATATT+TGG | + | chr1_2:6592418-6592437 | Msa0052360:CDS | 30.0% | |
| !! | GGTAATTTGCTCCAAATATT+TGG | - | chr1_2:6592432-6592451 | None:intergenic | 30.0% |
| ATGTATTCAAGAATTTCAGG+TGG | - | chr1_2:6592453-6592472 | None:intergenic | 30.0% | |
| AGGATGTATTCAAGAATTTC+AGG | - | chr1_2:6592456-6592475 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGGAAGAAAAGAA+AGG | - | chr1_2:6592476-6592495 | None:intergenic | 30.0% |
| AATGAAGGAGAGAAAATCAA+TGG | - | chr1_2:6592537-6592556 | None:intergenic | 30.0% | |
| ! | TTCTCTTGGATTTTGCTAAA+AGG | - | chr1_2:6592806-6592825 | None:intergenic | 30.0% |
| TGGATATTGAATCTTTCTCT+TGG | - | chr1_2:6592820-6592839 | None:intergenic | 30.0% | |
| ! | ACATTTGTTACAACACCAAA+AGG | + | chr1_2:6592867-6592886 | Msa0052360:CDS | 30.0% |
| ! | CATTTGTTACAACACCAAAA+GGG | + | chr1_2:6592868-6592887 | Msa0052360:CDS | 30.0% |
| ATGAATCAAGCTCAAAGATT+TGG | + | chr1_2:6592943-6592962 | Msa0052360:CDS | 30.0% | |
| ! | TGGAAGAAATTCAATGGTTT+TGG | + | chr1_2:6592963-6592982 | Msa0052360:CDS | 30.0% |
| TGAGGATTATCACTTAGAAT+TGG | - | chr1_2:6592990-6593009 | None:intergenic | 30.0% | |
| ! | AACAAGGCGTTTACTTTAAA+GGG | + | chr1_2:6593012-6593031 | Msa0052360:CDS | 30.0% |
| TGTTCAGGTAAATTAGCAAT+TGG | - | chr1_2:6593110-6593129 | None:intergenic | 30.0% | |
| !! | ACAACTCACTTTTGTTAGAT+TGG | + | chr1_2:6593127-6593146 | Msa0052360:CDS | 30.0% |
| !!! | AAAACTGTTTTTGATTGGTG+GGG | + | chr1_2:6593184-6593203 | Msa0052360:CDS | 30.0% |
| AAATGAGTGAAGAAGGAAAT+TGG | + | chr1_2:6593246-6593265 | Msa0052360:CDS | 30.0% | |
| AATTTCCTACACATAAGATC+AGG | - | chr1_2:6593290-6593309 | None:intergenic | 30.0% | |
| !!! | GTTTATTGTTTTTGGCATGA+AGG | + | chr1_2:6593341-6593360 | Msa0052360:CDS | 30.0% |
| ! | GCCAGAGATTTTGTATTATT+TGG | + | chr1_2:6593391-6593410 | Msa0052360:CDS | 30.0% |
| ! | ATTTGGTTTCTAGAAGAACT+TGG | + | chr1_2:6593408-6593427 | Msa0052360:CDS | 30.0% |
| CAATCTTAAATCACTTCCAA+TGG | + | chr1_2:6592404-6592423 | Msa0052360:CDS | 30.0% | |
| TTCCAATGGATCCAAATATT+TGG | + | chr1_2:6592418-6592437 | Msa0052360:CDS | 30.0% | |
| !! | GGTAATTTGCTCCAAATATT+TGG | - | chr1_2:6592432-6592451 | None:intergenic | 30.0% |
| ATGTATTCAAGAATTTCAGG+TGG | - | chr1_2:6592453-6592472 | None:intergenic | 30.0% | |
| AGGATGTATTCAAGAATTTC+AGG | - | chr1_2:6592456-6592475 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGGAAGAAAAGAA+AGG | - | chr1_2:6592476-6592495 | None:intergenic | 30.0% |
| AATGAAGGAGAGAAAATCAA+TGG | - | chr1_2:6592537-6592556 | None:intergenic | 30.0% | |
| ! | TTCTCTTGGATTTTGCTAAA+AGG | - | chr1_2:6592806-6592825 | None:intergenic | 30.0% |
| TGGATATTGAATCTTTCTCT+TGG | - | chr1_2:6592820-6592839 | None:intergenic | 30.0% | |
| ! | ACATTTGTTACAACACCAAA+AGG | + | chr1_2:6592867-6592886 | Msa0052360:CDS | 30.0% |
| ! | CATTTGTTACAACACCAAAA+GGG | + | chr1_2:6592868-6592887 | Msa0052360:CDS | 30.0% |
| ATGAATCAAGCTCAAAGATT+TGG | + | chr1_2:6592943-6592962 | Msa0052360:CDS | 30.0% | |
| ! | TGGAAGAAATTCAATGGTTT+TGG | + | chr1_2:6592963-6592982 | Msa0052360:CDS | 30.0% |
| TGAGGATTATCACTTAGAAT+TGG | - | chr1_2:6592990-6593009 | None:intergenic | 30.0% | |
| ! | AACAAGGCGTTTACTTTAAA+GGG | + | chr1_2:6593012-6593031 | Msa0052360:CDS | 30.0% |
| TGTTCAGGTAAATTAGCAAT+TGG | - | chr1_2:6593110-6593129 | None:intergenic | 30.0% | |
| !! | ACAACTCACTTTTGTTAGAT+TGG | + | chr1_2:6593127-6593146 | Msa0052360:CDS | 30.0% |
| !!! | AAAACTGTTTTTGATTGGTG+GGG | + | chr1_2:6593184-6593203 | Msa0052360:CDS | 30.0% |
| AAATGAGTGAAGAAGGAAAT+TGG | + | chr1_2:6593246-6593265 | Msa0052360:CDS | 30.0% | |
| AATTTCCTACACATAAGATC+AGG | - | chr1_2:6593290-6593309 | None:intergenic | 30.0% | |
| !!! | GTTTATTGTTTTTGGCATGA+AGG | + | chr1_2:6593341-6593360 | Msa0052360:CDS | 30.0% |
| ! | GCCAGAGATTTTGTATTATT+TGG | + | chr1_2:6593391-6593410 | Msa0052360:CDS | 30.0% |
| ! | ATTTGGTTTCTAGAAGAACT+TGG | + | chr1_2:6593408-6593427 | Msa0052360:CDS | 30.0% |
| CTCCAAATATTTGGATCCAT+TGG | - | chr1_2:6592423-6592442 | None:intergenic | 35.0% | |
| !! | AGAGACATGAATGTTTTGAG+AGG | - | chr1_2:6592489-6592508 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAACTTGCAA+AGG | + | chr1_2:6592504-6592523 | Msa0052360:CDS | 35.0% |
| ! | GATCAACTTGCAAAGGTTTT+TGG | + | chr1_2:6592511-6592530 | Msa0052360:CDS | 35.0% |
| GAAGAAGATGAAGATGATGA+AGG | - | chr1_2:6592576-6592595 | None:intergenic | 35.0% | |
| AATCATAGAGAGGAAAGTGA+CGG | - | chr1_2:6592644-6592663 | None:intergenic | 35.0% | |
| AAATATTACGCCATGTTCCA+AGG | - | chr1_2:6592671-6592690 | None:intergenic | 35.0% | |
| GAAACAAGAGTAGTGAAAGA+AGG | - | chr1_2:6592726-6592745 | None:intergenic | 35.0% | |
| ! | TTCACTACTCTTGTTTCTTC+TGG | + | chr1_2:6592729-6592748 | Msa0052360:CDS | 35.0% |
| AGTGATAATCCTCATCAACA+AGG | + | chr1_2:6592996-6593015 | Msa0052360:CDS | 35.0% | |
| ! | CAACAAGGCGTTTACTTTAA+AGG | + | chr1_2:6593011-6593030 | Msa0052360:CDS | 35.0% |
| TACACAACAGAAAATGGTTC+TGG | - | chr1_2:6593056-6593075 | None:intergenic | 35.0% | |
| !!! | GTGTATTTTGATTTGCAGAG+TGG | + | chr1_2:6593071-6593090 | Msa0052360:CDS | 35.0% |
| !! | TTGATTTGCAGAGTGGAAAA+TGG | + | chr1_2:6593078-6593097 | Msa0052360:CDS | 35.0% |
| ! | TGATTTGCAGAGTGGAAAAT+GGG | + | chr1_2:6593079-6593098 | Msa0052360:CDS | 35.0% |
| CTAACAAAAGTGAGTTGTTC+AGG | - | chr1_2:6593125-6593144 | None:intergenic | 35.0% | |
| ! | AATGATGATGCTGTTGAAGA+AGG | + | chr1_2:6593158-6593177 | Msa0052360:CDS | 35.0% |
| ! | TTTCTAGAAGAACTTGGCAT+TGG | + | chr1_2:6593414-6593433 | Msa0052360:CDS | 35.0% |
| CTACATTTGAAAGGCAAAGA+AGG | - | chr1_2:6593452-6593471 | None:intergenic | 35.0% | |
| AAACCACAGCTACATTTGAA+AGG | - | chr1_2:6593461-6593480 | None:intergenic | 35.0% | |
| !!! | AATGTAGCTGTGGTTTTAAG+TGG | + | chr1_2:6593465-6593484 | Msa0052360:CDS | 35.0% |
| CAAACTTCAGCATACAACTT+AGG | - | chr1_2:6593503-6593522 | None:intergenic | 35.0% | |
| CTCCAAATATTTGGATCCAT+TGG | - | chr1_2:6592423-6592442 | None:intergenic | 35.0% | |
| !! | AGAGACATGAATGTTTTGAG+AGG | - | chr1_2:6592489-6592508 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAACTTGCAA+AGG | + | chr1_2:6592504-6592523 | Msa0052360:CDS | 35.0% |
| ! | GATCAACTTGCAAAGGTTTT+TGG | + | chr1_2:6592511-6592530 | Msa0052360:CDS | 35.0% |
| GAAGAAGATGAAGATGATGA+AGG | - | chr1_2:6592576-6592595 | None:intergenic | 35.0% | |
| AATCATAGAGAGGAAAGTGA+CGG | - | chr1_2:6592644-6592663 | None:intergenic | 35.0% | |
| AAATATTACGCCATGTTCCA+AGG | - | chr1_2:6592671-6592690 | None:intergenic | 35.0% | |
| GAAACAAGAGTAGTGAAAGA+AGG | - | chr1_2:6592726-6592745 | None:intergenic | 35.0% | |
| ! | TTCACTACTCTTGTTTCTTC+TGG | + | chr1_2:6592729-6592748 | Msa0052360:CDS | 35.0% |
| AGTGATAATCCTCATCAACA+AGG | + | chr1_2:6592996-6593015 | Msa0052360:CDS | 35.0% | |
| ! | CAACAAGGCGTTTACTTTAA+AGG | + | chr1_2:6593011-6593030 | Msa0052360:CDS | 35.0% |
| TACACAACAGAAAATGGTTC+TGG | - | chr1_2:6593056-6593075 | None:intergenic | 35.0% | |
| !!! | GTGTATTTTGATTTGCAGAG+TGG | + | chr1_2:6593071-6593090 | Msa0052360:CDS | 35.0% |
| !! | TTGATTTGCAGAGTGGAAAA+TGG | + | chr1_2:6593078-6593097 | Msa0052360:CDS | 35.0% |
| ! | TGATTTGCAGAGTGGAAAAT+GGG | + | chr1_2:6593079-6593098 | Msa0052360:CDS | 35.0% |
| CTAACAAAAGTGAGTTGTTC+AGG | - | chr1_2:6593125-6593144 | None:intergenic | 35.0% | |
| ! | AATGATGATGCTGTTGAAGA+AGG | + | chr1_2:6593158-6593177 | Msa0052360:CDS | 35.0% |
| ! | TTTCTAGAAGAACTTGGCAT+TGG | + | chr1_2:6593414-6593433 | Msa0052360:CDS | 35.0% |
| CTACATTTGAAAGGCAAAGA+AGG | - | chr1_2:6593452-6593471 | None:intergenic | 35.0% | |
| AAACCACAGCTACATTTGAA+AGG | - | chr1_2:6593461-6593480 | None:intergenic | 35.0% | |
| !!! | AATGTAGCTGTGGTTTTAAG+TGG | + | chr1_2:6593465-6593484 | Msa0052360:CDS | 35.0% |
| CAAACTTCAGCATACAACTT+AGG | - | chr1_2:6593503-6593522 | None:intergenic | 35.0% | |
| ATGATTGCAACCTTGGAACA+TGG | + | chr1_2:6592658-6592677 | Msa0052360:CDS | 40.0% | |
| ! | ACTACTCTTGTTTCTTCTGG+TGG | + | chr1_2:6592732-6592751 | Msa0052360:CDS | 40.0% |
| ! | AAGTAAACGCCTTGTTGATG+AGG | - | chr1_2:6593008-6593027 | None:intergenic | 40.0% |
| !! | TGTTTTTGATTGGTGGGGTT+GGG | + | chr1_2:6593189-6593208 | Msa0052360:CDS | 40.0% |
| TTGGGAGCAATGGAATTTCA+AGG | + | chr1_2:6593207-6593226 | Msa0052360:CDS | 40.0% | |
| TTGTGGGAAATGAGTGAAGA+AGG | + | chr1_2:6593239-6593258 | Msa0052360:CDS | 40.0% | |
| GTTTGCCTGATCTTATGTGT+AGG | + | chr1_2:6593282-6593301 | Msa0052360:CDS | 40.0% | |
| TTGCCTTTCAAATGTAGCTG+TGG | + | chr1_2:6593455-6593474 | Msa0052360:CDS | 40.0% | |
| ATGATTGCAACCTTGGAACA+TGG | + | chr1_2:6592658-6592677 | Msa0052360:CDS | 40.0% | |
| ! | ACTACTCTTGTTTCTTCTGG+TGG | + | chr1_2:6592732-6592751 | Msa0052360:CDS | 40.0% |
| ! | AAGTAAACGCCTTGTTGATG+AGG | - | chr1_2:6593008-6593027 | None:intergenic | 40.0% |
| !! | TGTTTTTGATTGGTGGGGTT+GGG | + | chr1_2:6593189-6593208 | Msa0052360:CDS | 40.0% |
| TTGGGAGCAATGGAATTTCA+AGG | + | chr1_2:6593207-6593226 | Msa0052360:CDS | 40.0% | |
| TTGTGGGAAATGAGTGAAGA+AGG | + | chr1_2:6593239-6593258 | Msa0052360:CDS | 40.0% | |
| GTTTGCCTGATCTTATGTGT+AGG | + | chr1_2:6593282-6593301 | Msa0052360:CDS | 40.0% | |
| TTGCCTTTCAAATGTAGCTG+TGG | + | chr1_2:6593455-6593474 | Msa0052360:CDS | 40.0% | |
| GAAAGTGACGGTGGAATTGA+GGG | - | chr1_2:6592632-6592651 | None:intergenic | 45.0% | |
| CCAAGGTTGCAATCATAGAG+AGG | - | chr1_2:6592654-6592673 | None:intergenic | 45.0% | |
| CCTCTCTATGATTGCAACCT+TGG | + | chr1_2:6592651-6592670 | Msa0052360:CDS | 45.0% | |
| !!! | CTGTTTTTGATTGGTGGGGT+TGG | + | chr1_2:6593188-6593207 | Msa0052360:CDS | 45.0% |
| AAAGGCAAAGAAGGACACCT+AGG | - | chr1_2:6593443-6593462 | None:intergenic | 45.0% | |
| GAAAGTGACGGTGGAATTGA+GGG | - | chr1_2:6592632-6592651 | None:intergenic | 45.0% | |
| CCAAGGTTGCAATCATAGAG+AGG | - | chr1_2:6592654-6592673 | None:intergenic | 45.0% | |
| CCTCTCTATGATTGCAACCT+TGG | + | chr1_2:6592651-6592670 | Msa0052360:CDS | 45.0% | |
| !!! | CTGTTTTTGATTGGTGGGGT+TGG | + | chr1_2:6593188-6593207 | Msa0052360:CDS | 45.0% |
| AAAGGCAAAGAAGGACACCT+AGG | - | chr1_2:6593443-6593462 | None:intergenic | 45.0% | |
| GGAAAGTGACGGTGGAATTG+AGG | - | chr1_2:6592633-6592652 | None:intergenic | 50.0% | |
| CATAGAGAGGAAAGTGACGG+TGG | - | chr1_2:6592641-6592660 | None:intergenic | 50.0% | |
| !! | GAACTTGGCATTGGCTTCCT+AGG | + | chr1_2:6593423-6593442 | Msa0052360:CDS | 50.0% |
| GGAAAGTGACGGTGGAATTG+AGG | - | chr1_2:6592633-6592652 | None:intergenic | 50.0% | |
| CATAGAGAGGAAAGTGACGG+TGG | - | chr1_2:6592641-6592660 | None:intergenic | 50.0% | |
| !! | GAACTTGGCATTGGCTTCCT+AGG | + | chr1_2:6593423-6593442 | Msa0052360:CDS | 50.0% |
| ATTGGTGGGGTTGGGAGCAA+TGG | + | chr1_2:6593197-6593216 | Msa0052360:CDS | 55.0% | |
| ATTGGTGGGGTTGGGAGCAA+TGG | + | chr1_2:6593197-6593216 | Msa0052360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6592378 | 6593523 | 6592378 | ID=Msa0052360;Name=Msa0052360 |
| chr1_2 | mRNA | 6592378 | 6593523 | 6592378 | ID=Msa0052360-mRNA-1;Parent=Msa0052360;Name=Msa0052360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|381 |
| chr1_2 | exon | 6592378 | 6593523 | 6592378 | ID=Msa0052360-mRNA-1:exon:2163;Parent=Msa0052360-mRNA-1 |
| chr1_2 | CDS | 6592378 | 6593523 | 6592378 | ID=Msa0052360-mRNA-1:cds;Parent=Msa0052360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
