Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402350 | XP_003610330.1 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402350 | sp|Q9ZUH1|Y2424_ARATH | 77.101 | 345 | 79 | 0 | 1 | 345 | 1 | 345 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402350 | G7JGR0 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052360 | Msa1402350 | 0.801282 | 9.689734e-49 | -8.615850e-47 |
| Msa0052780 | Msa1402350 | 0.834981 | 2.189035e-56 | -8.615850e-47 |
| Msa0077370 | Msa1402350 | 0.844143 | 9.075621e-59 | -8.615850e-47 |
| Msa0090380 | Msa1402350 | 0.840725 | 7.314439e-58 | -8.615850e-47 |
| Msa0097370 | Msa1402350 | 0.803920 | 2.768576e-49 | -8.615850e-47 |
| Msa0097570 | Msa1402350 | 0.840467 | 8.543892e-58 | -8.615850e-47 |
| Msa0100750 | Msa1402350 | 0.806748 | 7.073932e-50 | -8.615850e-47 |
| Msa1355510 | Msa1402350 | 0.804951 | 1.688337e-49 | -8.615850e-47 |
| Msa1364080 | Msa1402350 | 0.839902 | 1.199903e-57 | -8.615850e-47 |
| Msa1370420 | Msa1402350 | 0.997458 | 6.966837e-243 | -8.615850e-47 |
| Msa1389640 | Msa1402350 | 0.802520 | 5.395537e-49 | -8.615850e-47 |
| Msa1402350 | Msa1413800 | 0.801779 | 7.663048e-49 | -8.615850e-47 |
| Msa1402350 | Msa1422230 | 0.810656 | 1.034036e-50 | -8.615850e-47 |
| Msa1402350 | Msa1433410 | 0.836199 | 1.076021e-56 | -8.615850e-47 |
| Msa1402350 | Msa1435320 | 0.833070 | 6.586986e-56 | -8.615850e-47 |
| Msa1402350 | Msa1436090 | 0.801467 | 8.882016e-49 | -8.615850e-47 |
| Msa1402350 | Msa1443400 | 0.833607 | 4.839486e-56 | -8.615850e-47 |
| Msa1402350 | Msa1443620 | 0.840895 | 6.600585e-58 | -8.615850e-47 |
| Msa1402350 | Msa1448040 | 0.834185 | 3.468395e-56 | -8.615850e-47 |
| Msa0611060 | Msa1402350 | 0.850273 | 1.889533e-60 | -8.615850e-47 |
| Msa0613300 | Msa1402350 | 0.808046 | 3.754476e-50 | -8.615850e-47 |
| Msa0698450 | Msa1402350 | 0.813183 | 2.911777e-51 | -8.615850e-47 |
| Msa0698460 | Msa1402350 | 0.806985 | 6.305172e-50 | -8.615850e-47 |
| Msa0729350 | Msa1402350 | 0.806810 | 6.864371e-50 | -8.615850e-47 |
| Msa0731690 | Msa1402350 | 0.807025 | 6.182790e-50 | -8.615850e-47 |
| Msa0744640 | Msa1402350 | 0.820207 | 7.749970e-53 | -8.615850e-47 |
| Msa0804870 | Msa1402350 | 0.807973 | 3.891526e-50 | -8.615850e-47 |
| Msa0816630 | Msa1402350 | 0.801672 | 8.063099e-49 | -8.615850e-47 |
| Msa0832950 | Msa1402350 | 0.805985 | 1.024699e-49 | -8.615850e-47 |
| Msa0841730 | Msa1402350 | 0.821976 | 3.032317e-53 | -8.615850e-47 |
| Msa0137860 | Msa1402350 | 0.837831 | 4.120339e-57 | -8.615850e-47 |
| Msa0170770 | Msa1402350 | 0.803418 | 3.519353e-49 | -8.615850e-47 |
| Msa0196880 | Msa1402350 | 0.812921 | 3.323480e-51 | -8.615850e-47 |
| Msa0203090 | Msa1402350 | 0.807396 | 5.158465e-50 | -8.615850e-47 |
| Msa0224130 | Msa1402350 | 0.842423 | 2.608937e-58 | -8.615850e-47 |
| Msa1225580 | Msa1402350 | 0.804247 | 2.367264e-49 | -8.615850e-47 |
| Msa1246790 | Msa1402350 | 0.804502 | 2.094305e-49 | -8.615850e-47 |
| Msa1256330 | Msa1402350 | 0.811452 | 6.952334e-51 | -8.615850e-47 |
| Msa1265020 | Msa1402350 | 0.800108 | 1.682078e-48 | -8.615850e-47 |
| Msa1296520 | Msa1402350 | 0.818711 | 1.700082e-52 | -8.615850e-47 |
| Msa1299780 | Msa1402350 | 0.825565 | 4.373146e-54 | -8.615850e-47 |
| Msa1329900 | Msa1402350 | 0.818639 | 1.765251e-52 | -8.615850e-47 |
| Msa1031460 | Msa1402350 | 0.824029 | 1.006975e-53 | -8.615850e-47 |
| Msa1044510 | Msa1402350 | 0.901842 | 1.778782e-78 | -8.615850e-47 |
| Msa1070540 | Msa1402350 | 0.827997 | 1.148520e-54 | -8.615850e-47 |
| Msa1089190 | Msa1402350 | 0.836210 | 1.069507e-56 | -8.615850e-47 |
| Msa1101240 | Msa1402350 | 0.828378 | 9.293632e-55 | -8.615850e-47 |
| Msa0264680 | Msa1402350 | 0.805551 | 1.264196e-49 | -8.615850e-47 |
| Msa0265270 | Msa1402350 | 0.845100 | 5.011679e-59 | -8.615850e-47 |
| Msa0265480 | Msa1402350 | 0.845794 | 3.250826e-59 | -8.615850e-47 |
| Msa0276430 | Msa1402350 | 0.807728 | 4.386417e-50 | -8.615850e-47 |
| Msa0302730 | Msa1402350 | 0.801916 | 7.185703e-49 | -8.615850e-47 |
| Msa0306310 | Msa1402350 | 0.834719 | 2.547346e-56 | -8.615850e-47 |
| Msa0316470 | Msa1402350 | 0.815250 | 1.017774e-51 | -8.615850e-47 |
| Msa0319680 | Msa1402350 | 0.800285 | 1.548444e-48 | -8.615850e-47 |
| Msa0332190 | Msa1402350 | 0.805781 | 1.131139e-49 | -8.615850e-47 |
| Msa0340370 | Msa1402350 | 0.829253 | 5.707659e-55 | -8.615850e-47 |
| Msa1113100 | Msa1402350 | 0.805478 | 1.309154e-49 | -8.615850e-47 |
| Msa1129420 | Msa1402350 | 0.801639 | 8.190358e-49 | -8.615850e-47 |
| Msa1173150 | Msa1402350 | 0.837493 | 5.030806e-57 | -8.615850e-47 |
| Msa1188350 | Msa1402350 | 0.817208 | 3.715181e-52 | -8.615850e-47 |
| Msa1212470 | Msa1402350 | 0.819719 | 1.001939e-52 | -8.615850e-47 |
| Msa1218160 | Msa1402350 | 0.804512 | 2.084344e-49 | -8.615850e-47 |
| Msa1221960 | Msa1402350 | 0.814878 | 1.231015e-51 | -8.615850e-47 |
| Msa0488580 | Msa1402350 | 0.811324 | 7.411258e-51 | -8.615850e-47 |
| Msa0529000 | Msa1402350 | 0.841732 | 3.975958e-58 | -8.615850e-47 |
| Msa0549140 | Msa1402350 | 0.813028 | 3.149344e-51 | -8.615850e-47 |
| Msa0550550 | Msa1402350 | 0.820026 | 8.525747e-53 | -8.615850e-47 |
| Msa0573950 | Msa1402350 | 0.829459 | 5.088595e-55 | -8.615850e-47 |
| Msa0576560 | Msa1402350 | 0.838019 | 3.687372e-57 | -8.615850e-47 |
| Msa0588710 | Msa1402350 | 0.809558 | 1.783254e-50 | -8.615850e-47 |
| Msa0945130 | Msa1402350 | 0.828656 | 7.961475e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402350 | MtrunA17_Chr4g0074051 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 723 |
| Msa1402350 | MtrunA17_Chr7g0255031 | 32.597 | 181 | 116 | 3 | 4 | 182 | 15 | 191 | 1.40e-21 | 95.5 |
| Msa1402350 | MtrunA17_Chr8g0387041 | 25.369 | 339 | 194 | 11 | 8 | 314 | 20 | 331 | 6.74e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402350 | AT2G24240.1 | 77.101 | 345 | 79 | 0 | 1 | 345 | 1 | 345 | 0.0 | 577 |
| Msa1402350 | AT4G30940.1 | 76.812 | 345 | 78 | 1 | 1 | 345 | 1 | 343 | 0.0 | 568 |
| Msa1402350 | AT5G41330.2 | 27.052 | 329 | 186 | 12 | 8 | 307 | 13 | 316 | 7.27e-22 | 96.7 |
| Msa1402350 | AT5G41330.1 | 27.052 | 329 | 186 | 12 | 8 | 307 | 13 | 316 | 7.27e-22 | 96.7 |
| Msa1402350 | AT3G09030.1 | 27.624 | 362 | 218 | 15 | 7 | 345 | 9 | 349 | 1.06e-16 | 81.3 |
Find 68 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACCTATAACAATATTGTT+AGG | 0.275446 | tig0022823:+46631 | None:intergenic |
| TAATTGTTATATTAGTCTTT+TGG | 0.277372 | tig0022823:-46281 | Msa1402350:CDS |
| GACCCTAACAATATTGTTAT+AGG | 0.314276 | tig0022823:-46634 | Msa1402350:CDS |
| GTTTGAGGAATTGGGTTTCA+TGG | 0.325807 | tig0022823:-46134 | Msa1402350:CDS |
| GGTGAATGAGTTTGAGGAAT+TGG | 0.341336 | tig0022823:-46143 | Msa1402350:CDS |
| ATGAATATGGTGTTGGTGTT+TGG | 0.349958 | tig0022823:-46435 | Msa1402350:CDS |
| TGGAATCTGTTACAAGATAA+TGG | 0.353958 | tig0022823:-47018 | Msa1402350:CDS |
| TGAATATGGTGTTGGTGTTT+GGG | 0.354115 | tig0022823:-46434 | Msa1402350:CDS |
| GGTGTTTGGGATCAAGTTAC+TGG | 0.372623 | tig0022823:-46421 | Msa1402350:CDS |
| AGATTGTCTTGTTCTGTTCA+AGG | 0.379858 | tig0022823:-46811 | Msa1402350:CDS |
| GGTTTGTTTAGTTCTCATAA+TGG | 0.395752 | tig0022823:-46574 | Msa1402350:CDS |
| GATAAGCTTCAATGGTTAGA+AGG | 0.398339 | tig0022823:-46346 | Msa1402350:CDS |
| GCATGGTTCATGTTTATGAT+TGG | 0.399840 | tig0022823:-46720 | Msa1402350:CDS |
| GTGCAATGTTAGATGAGAAT+TGG | 0.402672 | tig0022823:-47038 | Msa1402350:CDS |
| GGGGTCAATTTGATGGTAAT+AGG | 0.406966 | tig0022823:-46837 | Msa1402350:CDS |
| GCAAAGTGGGGTCAATTTGA+TGG | 0.408967 | tig0022823:-46844 | Msa1402350:CDS |
| CTTTGATAATCAAGATTAAG+AGG | 0.412692 | tig0022823:+46679 | None:intergenic |
| AAAGGAAGGAGTAATGAATA+TGG | 0.413587 | tig0022823:-46448 | Msa1402350:CDS |
| GTGAATGAGTTTGAGGAATT+GGG | 0.415612 | tig0022823:-46142 | Msa1402350:CDS |
| GCTAGAAAATAATTTATAAT+CGG | 0.422787 | tig0022823:+46474 | None:intergenic |
| TGGTCGTGGTGATGGTGGAA+TGG | 0.427839 | tig0022823:-46596 | Msa1402350:CDS |
| ATCTTAGATCTGCTACGAAC+AGG | 0.436194 | tig0022823:-46952 | Msa1402350:CDS |
| GTTCTCATAATGGTGAACTT+AGG | 0.437286 | tig0022823:-46564 | Msa1402350:CDS |
| AAACTCATTCACCACACAAA+TGG | 0.445408 | tig0022823:+46153 | None:intergenic |
| TTAGAGAGAAGAAAATGGTT+TGG | 0.451539 | tig0022823:-46255 | Msa1402350:CDS |
| GAGCCTTTAGGTTGGTCACT+TGG | 0.452125 | tig0022823:-46376 | Msa1402350:CDS |
| GGTCGTGGTGATGGTGGAAT+GGG | 0.462939 | tig0022823:-46595 | Msa1402350:CDS |
| GTCTGATGTAGGTGCTACTT+TGG | 0.469841 | tig0022823:-46227 | Msa1402350:CDS |
| CTTTGGCTGTGGATGAGAAA+AGG | 0.471495 | tig0022823:-46210 | Msa1402350:CDS |
| GCAACACAACAACCACCATC+TGG | 0.471839 | tig0022823:+46751 | None:intergenic |
| CACCTATAACAATATTGTTA+GGG | 0.476026 | tig0022823:+46632 | None:intergenic |
| GTTTGGTGTTGGTCTGATGT+AGG | 0.480232 | tig0022823:-46238 | Msa1402350:CDS |
| TTGTGTTGCTCATGGTTGCA+TGG | 0.482790 | tig0022823:-46737 | Msa1402350:CDS |
| AAGAGTCAACGATGTTGGTT+GGG | 0.490562 | tig0022823:-46659 | Msa1402350:CDS |
| AAAGAGTCAACGATGTTGGT+TGG | 0.491520 | tig0022823:-46660 | Msa1402350:CDS |
| CGAATTGCTGTTCCATCACC+AGG | 0.493877 | tig0022823:+46781 | None:intergenic |
| TGCAGGAAGGAATTCTATGT+TGG | 0.496931 | tig0022823:-47061 | Msa1402350:CDS |
| GGTGGTTGTTGTGTTGCTCA+TGG | 0.497436 | tig0022823:-46745 | Msa1402350:CDS |
| CATGTTAAAAGTTATACTGC+TGG | 0.501363 | tig0022823:-46514 | Msa1402350:CDS |
| TTGTGTGGTGAATGAGTTTG+AGG | 0.502881 | tig0022823:-46149 | Msa1402350:CDS |
| AGAAGAAAATGGTTTGGTGT+TGG | 0.511129 | tig0022823:-46249 | Msa1402350:CDS |
| TCATGTTCGTTCTGCAAAGT+GGG | 0.517806 | tig0022823:-46857 | Msa1402350:CDS |
| GTGATGCTGATAAGCTTCAA+TGG | 0.519136 | tig0022823:-46354 | Msa1402350:CDS |
| GCAGGAAGGAATTCTATGTT+GGG | 0.533773 | tig0022823:-47060 | Msa1402350:CDS |
| TGTAGGTGCTACTTTGGCTG+TGG | 0.541754 | tig0022823:-46221 | Msa1402350:CDS |
| TTTGGCTGTGGATGAGAAAA+GGG | 0.543803 | tig0022823:-46209 | Msa1402350:CDS |
| GCAACAACACTTGCAAATGC+AGG | 0.544141 | tig0022823:-47078 | Msa1402350:CDS |
| TATCAAAGAGTCAACGATGT+TGG | 0.555358 | tig0022823:-46664 | Msa1402350:CDS |
| GCAATTCGAGCTGGTCCAGA+TGG | 0.555633 | tig0022823:-46766 | Msa1402350:CDS |
| ATCATGTTCGTTCTGCAAAG+TGG | 0.558182 | tig0022823:-46858 | Msa1402350:CDS |
| CAAGGACAAGCACCTGGTGA+TGG | 0.562689 | tig0022823:-46793 | Msa1402350:CDS |
| GAAAGACTTGGTCGTGGTGA+TGG | 0.564375 | tig0022823:-46604 | Msa1402350:CDS |
| TCACCAAGTGACCAACCTAA+AGG | 0.580966 | tig0022823:+46373 | None:intergenic |
| AGGAGTAATGAATATGGTGT+TGG | 0.583666 | tig0022823:-46442 | Msa1402350:CDS |
| TCTGTTCAAGGACAAGCACC+TGG | 0.591737 | tig0022823:-46799 | Msa1402350:CDS |
| AGACTTGGTCGTGGTGATGG+TGG | 0.593685 | tig0022823:-46601 | Msa1402350:CDS |
| GGTGAGAGATGCAATAGCAA+TGG | 0.603673 | tig0022823:-46188 | Msa1402350:CDS |
| GAGAGATGCAATAGCAATGG+AGG | 0.611212 | tig0022823:-46185 | Msa1402350:CDS |
| AGAGTGAAATTCAACGTAGG+AGG | 0.612116 | tig0022823:-47120 | Msa1402350:CDS |
| GATGGAACAGCAATTCGAGC+TGG | 0.614847 | tig0022823:-46775 | Msa1402350:CDS |
| ATTCGAGCTGGTCCAGATGG+TGG | 0.627982 | tig0022823:-46763 | Msa1402350:CDS |
| GGATAATAATTCCATTTGTG+TGG | 0.643500 | tig0022823:-46164 | Msa1402350:CDS |
| AAAATTCATCGATCGTAACG+CGG | 0.649955 | tig0022823:-46989 | Msa1402350:CDS |
| CAACACTTGCAAATGCAGGA+AGG | 0.654570 | tig0022823:-47074 | Msa1402350:CDS |
| ATAGGTGTAAGTGAAAGACT+TGG | 0.679047 | tig0022823:-46616 | Msa1402350:CDS |
| CATGTTCGTTCTGCAAAGTG+GGG | 0.689762 | tig0022823:-46856 | Msa1402350:CDS |
| GATAGAGTGAAATTCAACGT+AGG | 0.690106 | tig0022823:-47123 | Msa1402350:CDS |
| GTAAGTGAAAGACTTGGTCG+TGG | 0.701643 | tig0022823:-46610 | Msa1402350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCTAGAAAATAATTTATAAT+CGG | + | tig0022823:46769-46788 | None:intergenic | 15.0% |
| !!! | ATATAACAATTATCTTTTCT+TGG | + | tig0022823:46951-46970 | None:intergenic | 15.0% |
| !!! | TAATTGTTATATTAGTCTTT+TGG | - | tig0022823:46959-46978 | Msa1402350:CDS | 15.0% |
| !! | GCTAGAAAATAATTTATAAT+CGG | + | tig0022823:46769-46788 | None:intergenic | 15.0% |
| !!! | ATATAACAATTATCTTTTCT+TGG | + | tig0022823:46951-46970 | None:intergenic | 15.0% |
| !!! | TAATTGTTATATTAGTCTTT+TGG | - | tig0022823:46959-46978 | Msa1402350:CDS | 15.0% |
| !!! | AAATTATTTTCTAGCTGTAA+AGG | - | tig0022823:46774-46793 | Msa1402350:CDS | 20.0% |
| !!! | AAATTATTTTCTAGCTGTAA+AGG | - | tig0022823:46774-46793 | Msa1402350:CDS | 20.0% |
| !! | CTTTGATAATCAAGATTAAG+AGG | + | tig0022823:46564-46583 | None:intergenic | 25.0% |
| ! | CACCTATAACAATATTGTTA+GGG | + | tig0022823:46611-46630 | None:intergenic | 25.0% |
| ! | ACACCTATAACAATATTGTT+AGG | + | tig0022823:46612-46631 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTATGAGCCTTT+AGG | - | tig0022823:46852-46871 | Msa1402350:CDS | 25.0% |
| !! | CTTTGATAATCAAGATTAAG+AGG | + | tig0022823:46564-46583 | None:intergenic | 25.0% |
| ! | CACCTATAACAATATTGTTA+GGG | + | tig0022823:46611-46630 | None:intergenic | 25.0% |
| ! | ACACCTATAACAATATTGTT+AGG | + | tig0022823:46612-46631 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTATGAGCCTTT+AGG | - | tig0022823:46852-46871 | Msa1402350:CDS | 25.0% |
| TGGAATCTGTTACAAGATAA+TGG | - | tig0022823:46222-46241 | Msa1402350:CDS | 30.0% | |
| GACCCTAACAATATTGTTAT+AGG | - | tig0022823:46606-46625 | Msa1402350:CDS | 30.0% | |
| !! | GGTTTGTTTAGTTCTCATAA+TGG | - | tig0022823:46666-46685 | Msa1402350:CDS | 30.0% |
| CATGTTAAAAGTTATACTGC+TGG | - | tig0022823:46726-46745 | Msa1402350:CDS | 30.0% | |
| !!! | TATTTTCTAGCTGTAAAGGA+AGG | - | tig0022823:46778-46797 | Msa1402350:CDS | 30.0% |
| AAAGGAAGGAGTAATGAATA+TGG | - | tig0022823:46792-46811 | Msa1402350:CDS | 30.0% | |
| !!! | TTTTTTATGAGCCTTTAGGT+TGG | - | tig0022823:46856-46875 | Msa1402350:CDS | 30.0% |
| !! | GGATTTTAGAGAGAAGAAAA+TGG | - | tig0022823:46980-46999 | Msa1402350:CDS | 30.0% |
| TTAGAGAGAAGAAAATGGTT+TGG | - | tig0022823:46985-47004 | Msa1402350:CDS | 30.0% | |
| GGATAATAATTCCATTTGTG+TGG | - | tig0022823:47076-47095 | Msa1402350:CDS | 30.0% | |
| TGGAATCTGTTACAAGATAA+TGG | - | tig0022823:46222-46241 | Msa1402350:CDS | 30.0% | |
| GACCCTAACAATATTGTTAT+AGG | - | tig0022823:46606-46625 | Msa1402350:CDS | 30.0% | |
| !! | GGTTTGTTTAGTTCTCATAA+TGG | - | tig0022823:46666-46685 | Msa1402350:CDS | 30.0% |
| CATGTTAAAAGTTATACTGC+TGG | - | tig0022823:46726-46745 | Msa1402350:CDS | 30.0% | |
| !!! | TATTTTCTAGCTGTAAAGGA+AGG | - | tig0022823:46778-46797 | Msa1402350:CDS | 30.0% |
| AAAGGAAGGAGTAATGAATA+TGG | - | tig0022823:46792-46811 | Msa1402350:CDS | 30.0% | |
| !!! | TTTTTTATGAGCCTTTAGGT+TGG | - | tig0022823:46856-46875 | Msa1402350:CDS | 30.0% |
| !! | GGATTTTAGAGAGAAGAAAA+TGG | - | tig0022823:46980-46999 | Msa1402350:CDS | 30.0% |
| TTAGAGAGAAGAAAATGGTT+TGG | - | tig0022823:46985-47004 | Msa1402350:CDS | 30.0% | |
| GGATAATAATTCCATTTGTG+TGG | - | tig0022823:47076-47095 | Msa1402350:CDS | 30.0% | |
| GATAGAGTGAAATTCAACGT+AGG | - | tig0022823:46117-46136 | Msa1402350:CDS | 35.0% | |
| GTGCAATGTTAGATGAGAAT+TGG | - | tig0022823:46202-46221 | Msa1402350:CDS | 35.0% | |
| AAAATTCATCGATCGTAACG+CGG | - | tig0022823:46251-46270 | Msa1402350:CDS | 35.0% | |
| !! | GCTTTTCAGGAACATTTTGA+GGG | + | tig0022823:46326-46345 | None:intergenic | 35.0% |
| !! | AGCTTTTCAGGAACATTTTG+AGG | + | tig0022823:46327-46346 | None:intergenic | 35.0% |
| ! | TCTCTGTAAAGAAGCTTTTC+AGG | + | tig0022823:46339-46358 | None:intergenic | 35.0% |
| ! | TACAGAGAAGCTCTGTTTTA+TGG | - | tig0022823:46351-46370 | Msa1402350:CDS | 35.0% |
| ! | AGATTGTCTTGTTCTGTTCA+AGG | - | tig0022823:46429-46448 | Msa1402350:CDS | 35.0% |
| GCATGGTTCATGTTTATGAT+TGG | - | tig0022823:46520-46539 | Msa1402350:CDS | 35.0% | |
| TATCAAAGAGTCAACGATGT+TGG | - | tig0022823:46576-46595 | Msa1402350:CDS | 35.0% | |
| ATAGGTGTAAGTGAAAGACT+TGG | - | tig0022823:46624-46643 | Msa1402350:CDS | 35.0% | |
| GTTCTCATAATGGTGAACTT+AGG | - | tig0022823:46676-46695 | Msa1402350:CDS | 35.0% | |
| AGGAGTAATGAATATGGTGT+TGG | - | tig0022823:46798-46817 | Msa1402350:CDS | 35.0% | |
| !! | ATGAATATGGTGTTGGTGTT+TGG | - | tig0022823:46805-46824 | Msa1402350:CDS | 35.0% |
| !! | TGAATATGGTGTTGGTGTTT+GGG | - | tig0022823:46806-46825 | Msa1402350:CDS | 35.0% |
| GATAAGCTTCAATGGTTAGA+AGG | - | tig0022823:46894-46913 | Msa1402350:CDS | 35.0% | |
| !! | AGAAGAAAATGGTTTGGTGT+TGG | - | tig0022823:46991-47010 | Msa1402350:CDS | 35.0% |
| AAACTCATTCACCACACAAA+TGG | + | tig0022823:47090-47109 | None:intergenic | 35.0% | |
| GTGAATGAGTTTGAGGAATT+GGG | - | tig0022823:47098-47117 | Msa1402350:CDS | 35.0% | |
| GATAGAGTGAAATTCAACGT+AGG | - | tig0022823:46117-46136 | Msa1402350:CDS | 35.0% | |
| GTGCAATGTTAGATGAGAAT+TGG | - | tig0022823:46202-46221 | Msa1402350:CDS | 35.0% | |
| AAAATTCATCGATCGTAACG+CGG | - | tig0022823:46251-46270 | Msa1402350:CDS | 35.0% | |
| !! | GCTTTTCAGGAACATTTTGA+GGG | + | tig0022823:46326-46345 | None:intergenic | 35.0% |
| !! | AGCTTTTCAGGAACATTTTG+AGG | + | tig0022823:46327-46346 | None:intergenic | 35.0% |
| ! | TCTCTGTAAAGAAGCTTTTC+AGG | + | tig0022823:46339-46358 | None:intergenic | 35.0% |
| ! | TACAGAGAAGCTCTGTTTTA+TGG | - | tig0022823:46351-46370 | Msa1402350:CDS | 35.0% |
| ! | AGATTGTCTTGTTCTGTTCA+AGG | - | tig0022823:46429-46448 | Msa1402350:CDS | 35.0% |
| GCATGGTTCATGTTTATGAT+TGG | - | tig0022823:46520-46539 | Msa1402350:CDS | 35.0% | |
| TATCAAAGAGTCAACGATGT+TGG | - | tig0022823:46576-46595 | Msa1402350:CDS | 35.0% | |
| ATAGGTGTAAGTGAAAGACT+TGG | - | tig0022823:46624-46643 | Msa1402350:CDS | 35.0% | |
| GTTCTCATAATGGTGAACTT+AGG | - | tig0022823:46676-46695 | Msa1402350:CDS | 35.0% | |
| AGGAGTAATGAATATGGTGT+TGG | - | tig0022823:46798-46817 | Msa1402350:CDS | 35.0% | |
| !! | ATGAATATGGTGTTGGTGTT+TGG | - | tig0022823:46805-46824 | Msa1402350:CDS | 35.0% |
| !! | TGAATATGGTGTTGGTGTTT+GGG | - | tig0022823:46806-46825 | Msa1402350:CDS | 35.0% |
| GATAAGCTTCAATGGTTAGA+AGG | - | tig0022823:46894-46913 | Msa1402350:CDS | 35.0% | |
| !! | AGAAGAAAATGGTTTGGTGT+TGG | - | tig0022823:46991-47010 | Msa1402350:CDS | 35.0% |
| AAACTCATTCACCACACAAA+TGG | + | tig0022823:47090-47109 | None:intergenic | 35.0% | |
| GTGAATGAGTTTGAGGAATT+GGG | - | tig0022823:47098-47117 | Msa1402350:CDS | 35.0% | |
| AGAGTGAAATTCAACGTAGG+AGG | - | tig0022823:46120-46139 | Msa1402350:CDS | 40.0% | |
| TGCAGGAAGGAATTCTATGT+TGG | - | tig0022823:46179-46198 | Msa1402350:CDS | 40.0% | |
| GCAGGAAGGAATTCTATGTT+GGG | - | tig0022823:46180-46199 | Msa1402350:CDS | 40.0% | |
| ATCTTAGATCTGCTACGAAC+AGG | - | tig0022823:46288-46307 | Msa1402350:CDS | 40.0% | |
| ATCATGTTCGTTCTGCAAAG+TGG | - | tig0022823:46382-46401 | Msa1402350:CDS | 40.0% | |
| TCATGTTCGTTCTGCAAAGT+GGG | - | tig0022823:46383-46402 | Msa1402350:CDS | 40.0% | |
| ! | GGGGTCAATTTGATGGTAAT+AGG | - | tig0022823:46403-46422 | Msa1402350:CDS | 40.0% |
| AAAGAGTCAACGATGTTGGT+TGG | - | tig0022823:46580-46599 | Msa1402350:CDS | 40.0% | |
| ! | AAGAGTCAACGATGTTGGTT+GGG | - | tig0022823:46581-46600 | Msa1402350:CDS | 40.0% |
| GTGATGCTGATAAGCTTCAA+TGG | - | tig0022823:46886-46905 | Msa1402350:CDS | 40.0% | |
| TTTGGCTGTGGATGAGAAAA+GGG | - | tig0022823:47031-47050 | Msa1402350:CDS | 40.0% | |
| TTGTGTGGTGAATGAGTTTG+AGG | - | tig0022823:47091-47110 | Msa1402350:CDS | 40.0% | |
| GGTGAATGAGTTTGAGGAAT+TGG | - | tig0022823:47097-47116 | Msa1402350:CDS | 40.0% | |
| GTTTGAGGAATTGGGTTTCA+TGG | - | tig0022823:47106-47125 | Msa1402350:CDS | 40.0% | |
| AGAGTGAAATTCAACGTAGG+AGG | - | tig0022823:46120-46139 | Msa1402350:CDS | 40.0% | |
| TGCAGGAAGGAATTCTATGT+TGG | - | tig0022823:46179-46198 | Msa1402350:CDS | 40.0% | |
| GCAGGAAGGAATTCTATGTT+GGG | - | tig0022823:46180-46199 | Msa1402350:CDS | 40.0% | |
| ATCTTAGATCTGCTACGAAC+AGG | - | tig0022823:46288-46307 | Msa1402350:CDS | 40.0% | |
| ATCATGTTCGTTCTGCAAAG+TGG | - | tig0022823:46382-46401 | Msa1402350:CDS | 40.0% | |
| TCATGTTCGTTCTGCAAAGT+GGG | - | tig0022823:46383-46402 | Msa1402350:CDS | 40.0% | |
| ! | GGGGTCAATTTGATGGTAAT+AGG | - | tig0022823:46403-46422 | Msa1402350:CDS | 40.0% |
| AAAGAGTCAACGATGTTGGT+TGG | - | tig0022823:46580-46599 | Msa1402350:CDS | 40.0% | |
| ! | AAGAGTCAACGATGTTGGTT+GGG | - | tig0022823:46581-46600 | Msa1402350:CDS | 40.0% |
| GTGATGCTGATAAGCTTCAA+TGG | - | tig0022823:46886-46905 | Msa1402350:CDS | 40.0% | |
| TTTGGCTGTGGATGAGAAAA+GGG | - | tig0022823:47031-47050 | Msa1402350:CDS | 40.0% | |
| TTGTGTGGTGAATGAGTTTG+AGG | - | tig0022823:47091-47110 | Msa1402350:CDS | 40.0% | |
| GGTGAATGAGTTTGAGGAAT+TGG | - | tig0022823:47097-47116 | Msa1402350:CDS | 40.0% | |
| GTTTGAGGAATTGGGTTTCA+TGG | - | tig0022823:47106-47125 | Msa1402350:CDS | 40.0% | |
| GCAACAACACTTGCAAATGC+AGG | - | tig0022823:46162-46181 | Msa1402350:CDS | 45.0% | |
| CAACACTTGCAAATGCAGGA+AGG | - | tig0022823:46166-46185 | Msa1402350:CDS | 45.0% | |
| CATGTTCGTTCTGCAAAGTG+GGG | - | tig0022823:46384-46403 | Msa1402350:CDS | 45.0% | |
| GCAAAGTGGGGTCAATTTGA+TGG | - | tig0022823:46396-46415 | Msa1402350:CDS | 45.0% | |
| ! | TTGTGTTGCTCATGGTTGCA+TGG | - | tig0022823:46503-46522 | Msa1402350:CDS | 45.0% |
| ! | GTAAGTGAAAGACTTGGTCG+TGG | - | tig0022823:46630-46649 | Msa1402350:CDS | 45.0% |
| ! | GGTGTTTGGGATCAAGTTAC+TGG | - | tig0022823:46819-46838 | Msa1402350:CDS | 45.0% |
| TCACCAAGTGACCAACCTAA+AGG | + | tig0022823:46870-46889 | None:intergenic | 45.0% | |
| !! | GTTTGGTGTTGGTCTGATGT+AGG | - | tig0022823:47002-47021 | Msa1402350:CDS | 45.0% |
| !! | GTCTGATGTAGGTGCTACTT+TGG | - | tig0022823:47013-47032 | Msa1402350:CDS | 45.0% |
| CTTTGGCTGTGGATGAGAAA+AGG | - | tig0022823:47030-47049 | Msa1402350:CDS | 45.0% | |
| GGTGAGAGATGCAATAGCAA+TGG | - | tig0022823:47052-47071 | Msa1402350:CDS | 45.0% | |
| GAGAGATGCAATAGCAATGG+AGG | - | tig0022823:47055-47074 | Msa1402350:CDS | 45.0% | |
| GCAACAACACTTGCAAATGC+AGG | - | tig0022823:46162-46181 | Msa1402350:CDS | 45.0% | |
| CAACACTTGCAAATGCAGGA+AGG | - | tig0022823:46166-46185 | Msa1402350:CDS | 45.0% | |
| CATGTTCGTTCTGCAAAGTG+GGG | - | tig0022823:46384-46403 | Msa1402350:CDS | 45.0% | |
| GCAAAGTGGGGTCAATTTGA+TGG | - | tig0022823:46396-46415 | Msa1402350:CDS | 45.0% | |
| ! | TTGTGTTGCTCATGGTTGCA+TGG | - | tig0022823:46503-46522 | Msa1402350:CDS | 45.0% |
| ! | GTAAGTGAAAGACTTGGTCG+TGG | - | tig0022823:46630-46649 | Msa1402350:CDS | 45.0% |
| ! | GGTGTTTGGGATCAAGTTAC+TGG | - | tig0022823:46819-46838 | Msa1402350:CDS | 45.0% |
| TCACCAAGTGACCAACCTAA+AGG | + | tig0022823:46870-46889 | None:intergenic | 45.0% | |
| !! | GTTTGGTGTTGGTCTGATGT+AGG | - | tig0022823:47002-47021 | Msa1402350:CDS | 45.0% |
| !! | GTCTGATGTAGGTGCTACTT+TGG | - | tig0022823:47013-47032 | Msa1402350:CDS | 45.0% |
| CTTTGGCTGTGGATGAGAAA+AGG | - | tig0022823:47030-47049 | Msa1402350:CDS | 45.0% | |
| GGTGAGAGATGCAATAGCAA+TGG | - | tig0022823:47052-47071 | Msa1402350:CDS | 45.0% | |
| GAGAGATGCAATAGCAATGG+AGG | - | tig0022823:47055-47074 | Msa1402350:CDS | 45.0% | |
| TCTGTTCAAGGACAAGCACC+TGG | - | tig0022823:46441-46460 | Msa1402350:CDS | 50.0% | |
| ! | CGAATTGCTGTTCCATCACC+AGG | + | tig0022823:46462-46481 | None:intergenic | 50.0% |
| GATGGAACAGCAATTCGAGC+TGG | - | tig0022823:46465-46484 | Msa1402350:CDS | 50.0% | |
| GCAACACAACAACCACCATC+TGG | + | tig0022823:46492-46511 | None:intergenic | 50.0% | |
| ! | GGTGGTTGTTGTGTTGCTCA+TGG | - | tig0022823:46495-46514 | Msa1402350:CDS | 50.0% |
| ! | GAAAGACTTGGTCGTGGTGA+TGG | - | tig0022823:46636-46655 | Msa1402350:CDS | 50.0% |
| !! | GAGCCTTTAGGTTGGTCACT+TGG | - | tig0022823:46864-46883 | Msa1402350:CDS | 50.0% |
| !! | TGTAGGTGCTACTTTGGCTG+TGG | - | tig0022823:47019-47038 | Msa1402350:CDS | 50.0% |
| TCTGTTCAAGGACAAGCACC+TGG | - | tig0022823:46441-46460 | Msa1402350:CDS | 50.0% | |
| ! | CGAATTGCTGTTCCATCACC+AGG | + | tig0022823:46462-46481 | None:intergenic | 50.0% |
| GATGGAACAGCAATTCGAGC+TGG | - | tig0022823:46465-46484 | Msa1402350:CDS | 50.0% | |
| GCAACACAACAACCACCATC+TGG | + | tig0022823:46492-46511 | None:intergenic | 50.0% | |
| ! | GGTGGTTGTTGTGTTGCTCA+TGG | - | tig0022823:46495-46514 | Msa1402350:CDS | 50.0% |
| ! | GAAAGACTTGGTCGTGGTGA+TGG | - | tig0022823:46636-46655 | Msa1402350:CDS | 50.0% |
| !! | GAGCCTTTAGGTTGGTCACT+TGG | - | tig0022823:46864-46883 | Msa1402350:CDS | 50.0% |
| !! | TGTAGGTGCTACTTTGGCTG+TGG | - | tig0022823:47019-47038 | Msa1402350:CDS | 50.0% |
| CAAGGACAAGCACCTGGTGA+TGG | - | tig0022823:46447-46466 | Msa1402350:CDS | 55.0% | |
| GCAATTCGAGCTGGTCCAGA+TGG | - | tig0022823:46474-46493 | Msa1402350:CDS | 55.0% | |
| ATTCGAGCTGGTCCAGATGG+TGG | - | tig0022823:46477-46496 | Msa1402350:CDS | 55.0% | |
| !! | AGACTTGGTCGTGGTGATGG+TGG | - | tig0022823:46639-46658 | Msa1402350:CDS | 55.0% |
| !! | TGGTCGTGGTGATGGTGGAA+TGG | - | tig0022823:46644-46663 | Msa1402350:CDS | 55.0% |
| !! | GGTCGTGGTGATGGTGGAAT+GGG | - | tig0022823:46645-46664 | Msa1402350:CDS | 55.0% |
| CAAGGACAAGCACCTGGTGA+TGG | - | tig0022823:46447-46466 | Msa1402350:CDS | 55.0% | |
| GCAATTCGAGCTGGTCCAGA+TGG | - | tig0022823:46474-46493 | Msa1402350:CDS | 55.0% | |
| ATTCGAGCTGGTCCAGATGG+TGG | - | tig0022823:46477-46496 | Msa1402350:CDS | 55.0% | |
| !! | AGACTTGGTCGTGGTGATGG+TGG | - | tig0022823:46639-46658 | Msa1402350:CDS | 55.0% |
| !! | TGGTCGTGGTGATGGTGGAA+TGG | - | tig0022823:46644-46663 | Msa1402350:CDS | 55.0% |
| !! | GGTCGTGGTGATGGTGGAAT+GGG | - | tig0022823:46645-46664 | Msa1402350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022823 | gene | 46102 | 47160 | 46102 | ID=Msa1402350;Name=Msa1402350 |
| tig0022823 | mRNA | 46102 | 47160 | 46102 | ID=Msa1402350-mRNA-1;Parent=Msa1402350;Name=Msa1402350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|352 |
| tig0022823 | exon | 46102 | 47160 | 46102 | ID=Msa1402350-mRNA-1:exon:18880;Parent=Msa1402350-mRNA-1 |
| tig0022823 | CDS | 46102 | 47160 | 46102 | ID=Msa1402350-mRNA-1:cds;Parent=Msa1402350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
