Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370420 | XP_003610330.1 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370420 | sp|Q9ZUH1|Y2424_ARATH | 77.101 | 345 | 79 | 0 | 1 | 345 | 1 | 345 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370420 | G7JGR0 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052360 | Msa1370420 | 0.800253 | 1.571583e-48 | -8.615850e-47 |
| Msa0052780 | Msa1370420 | 0.834670 | 2.620423e-56 | -8.615850e-47 |
| Msa0077370 | Msa1370420 | 0.848726 | 5.099457e-60 | -8.615850e-47 |
| Msa0090380 | Msa1370420 | 0.842801 | 2.071233e-58 | -8.615850e-47 |
| Msa0097370 | Msa1370420 | 0.802050 | 6.743522e-49 | -8.615850e-47 |
| Msa0097570 | Msa1370420 | 0.840453 | 8.615030e-58 | -8.615850e-47 |
| Msa0100750 | Msa1370420 | 0.805991 | 1.021579e-49 | -8.615850e-47 |
| Msa1355510 | Msa1370420 | 0.806174 | 9.350997e-50 | -8.615850e-47 |
| Msa1364080 | Msa1370420 | 0.840878 | 6.669687e-58 | -8.615850e-47 |
| Msa1370420 | Msa1370810 | 0.803053 | 4.188719e-49 | -8.615850e-47 |
| Msa1370420 | Msa1389640 | 0.803289 | 3.742245e-49 | -8.615850e-47 |
| Msa1370420 | Msa1402350 | 0.997458 | 6.966837e-243 | -8.615850e-47 |
| Msa1370420 | Msa1413800 | 0.801088 | 1.061870e-48 | -8.615850e-47 |
| Msa1370420 | Msa1422230 | 0.810933 | 9.010486e-51 | -8.615850e-47 |
| Msa1370420 | Msa1433410 | 0.838076 | 3.563805e-57 | -8.615850e-47 |
| Msa1370420 | Msa1435320 | 0.833916 | 4.050032e-56 | -8.615850e-47 |
| Msa1370420 | Msa1436090 | 0.800116 | 1.676001e-48 | -8.615850e-47 |
| Msa1370420 | Msa1443400 | 0.834461 | 2.957319e-56 | -8.615850e-47 |
| Msa1370420 | Msa1443620 | 0.840454 | 8.611946e-58 | -8.615850e-47 |
| Msa1370420 | Msa1448040 | 0.834925 | 2.261117e-56 | -8.615850e-47 |
| Msa0611060 | Msa1370420 | 0.852532 | 4.340799e-61 | -8.615850e-47 |
| Msa0613300 | Msa1370420 | 0.811199 | 7.887152e-51 | -8.615850e-47 |
| Msa0698450 | Msa1370420 | 0.816817 | 4.548215e-52 | -8.615850e-47 |
| Msa0698460 | Msa1370420 | 0.810550 | 1.090314e-50 | -8.615850e-47 |
| Msa0729350 | Msa1370420 | 0.805741 | 1.152826e-49 | -8.615850e-47 |
| Msa0731690 | Msa1370420 | 0.806635 | 7.476353e-50 | -8.615850e-47 |
| Msa0744640 | Msa1370420 | 0.822476 | 2.321584e-53 | -8.615850e-47 |
| Msa0804870 | Msa1370420 | 0.805710 | 1.170493e-49 | -8.615850e-47 |
| Msa0816630 | Msa1370420 | 0.800011 | 1.760157e-48 | -8.615850e-47 |
| Msa0832950 | Msa1370420 | 0.806460 | 8.137145e-50 | -8.615850e-47 |
| Msa0841730 | Msa1370420 | 0.824121 | 9.579605e-54 | -8.615850e-47 |
| Msa0137860 | Msa1370420 | 0.839702 | 1.352898e-57 | -8.615850e-47 |
| Msa0170770 | Msa1370420 | 0.805698 | 1.177543e-49 | -8.615850e-47 |
| Msa0196880 | Msa1370420 | 0.814843 | 1.253161e-51 | -8.615850e-47 |
| Msa0203090 | Msa1370420 | 0.810049 | 1.398262e-50 | -8.615850e-47 |
| Msa0224130 | Msa1370420 | 0.843180 | 1.641960e-58 | -8.615850e-47 |
| Msa1225580 | Msa1370420 | 0.805489 | 1.302513e-49 | -8.615850e-47 |
| Msa1246790 | Msa1370420 | 0.805466 | 1.317083e-49 | -8.615850e-47 |
| Msa1256330 | Msa1370420 | 0.812552 | 4.002559e-51 | -8.615850e-47 |
| Msa1296520 | Msa1370420 | 0.819653 | 1.037421e-52 | -8.615850e-47 |
| Msa1299780 | Msa1370420 | 0.823221 | 1.556299e-53 | -8.615850e-47 |
| Msa1329900 | Msa1370420 | 0.818014 | 2.444978e-52 | -8.615850e-47 |
| Msa1000800 | Msa1370420 | 0.800047 | 1.730712e-48 | -8.615850e-47 |
| Msa1031460 | Msa1370420 | 0.824078 | 9.806618e-54 | -8.615850e-47 |
| Msa1044510 | Msa1370420 | 0.904591 | 1.046059e-79 | -8.615850e-47 |
| Msa1070540 | Msa1370420 | 0.828125 | 1.069678e-54 | -8.615850e-47 |
| Msa1089190 | Msa1370420 | 0.836263 | 1.036532e-56 | -8.615850e-47 |
| Msa1101240 | Msa1370420 | 0.828489 | 8.740842e-55 | -8.615850e-47 |
| Msa0264680 | Msa1370420 | 0.806834 | 6.784717e-50 | -8.615850e-47 |
| Msa0265270 | Msa1370420 | 0.846078 | 2.721595e-59 | -8.615850e-47 |
| Msa0265480 | Msa1370420 | 0.847551 | 1.076389e-59 | -8.615850e-47 |
| Msa0276430 | Msa1370420 | 0.808585 | 2.881658e-50 | -8.615850e-47 |
| Msa0302730 | Msa1370420 | 0.803515 | 3.359753e-49 | -8.615850e-47 |
| Msa0306310 | Msa1370420 | 0.835556 | 1.566129e-56 | -8.615850e-47 |
| Msa0310730 | Msa1370420 | -0.800088 | 1.697726e-48 | -8.615850e-47 |
| Msa0316470 | Msa1370420 | 0.814585 | 1.429739e-51 | -8.615850e-47 |
| Msa0332190 | Msa1370420 | 0.808348 | 3.236616e-50 | -8.615850e-47 |
| Msa0340370 | Msa1370420 | 0.829096 | 6.229871e-55 | -8.615850e-47 |
| Msa1113100 | Msa1370420 | 0.807664 | 4.526549e-50 | -8.615850e-47 |
| Msa1129420 | Msa1370420 | 0.803172 | 3.956924e-49 | -8.615850e-47 |
| Msa1131790 | Msa1370420 | 0.800057 | 1.723169e-48 | -8.615850e-47 |
| Msa1173150 | Msa1370420 | 0.837107 | 6.316577e-57 | -8.615850e-47 |
| Msa1188350 | Msa1370420 | 0.817864 | 2.643388e-52 | -8.615850e-47 |
| Msa1212470 | Msa1370420 | 0.818963 | 1.489623e-52 | -8.615850e-47 |
| Msa1218160 | Msa1370420 | 0.806127 | 9.565271e-50 | -8.615850e-47 |
| Msa1221960 | Msa1370420 | 0.814534 | 1.467187e-51 | -8.615850e-47 |
| Msa0488580 | Msa1370420 | 0.810237 | 1.274012e-50 | -8.615850e-47 |
| Msa0529000 | Msa1370420 | 0.845411 | 4.129711e-59 | -8.615850e-47 |
| Msa0549140 | Msa1370420 | 0.816061 | 6.715326e-52 | -8.615850e-47 |
| Msa0550550 | Msa1370420 | 0.822718 | 2.039020e-53 | -8.615850e-47 |
| Msa0561360 | Msa1370420 | 0.800647 | 1.306590e-48 | -8.615850e-47 |
| Msa0573950 | Msa1370420 | 0.831447 | 1.660513e-55 | -8.615850e-47 |
| Msa0576560 | Msa1370420 | 0.841329 | 5.076023e-58 | -8.615850e-47 |
| Msa0588710 | Msa1370420 | 0.810819 | 9.533656e-51 | -8.615850e-47 |
| Msa0864820 | Msa1370420 | -0.801956 | 7.050664e-49 | -8.615850e-47 |
| Msa0945130 | Msa1370420 | 0.829302 | 5.553936e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370420 | MtrunA17_Chr4g0074051 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 723 |
| Msa1370420 | MtrunA17_Chr7g0255031 | 32.597 | 181 | 116 | 3 | 4 | 182 | 15 | 191 | 1.40e-21 | 95.5 |
| Msa1370420 | MtrunA17_Chr8g0387041 | 25.369 | 339 | 194 | 11 | 8 | 314 | 20 | 331 | 6.74e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370420 | AT2G24240.1 | 77.101 | 345 | 79 | 0 | 1 | 345 | 1 | 345 | 0.0 | 577 |
| Msa1370420 | AT4G30940.1 | 76.812 | 345 | 78 | 1 | 1 | 345 | 1 | 343 | 0.0 | 568 |
| Msa1370420 | AT5G41330.2 | 27.052 | 329 | 186 | 12 | 8 | 307 | 13 | 316 | 7.27e-22 | 96.7 |
| Msa1370420 | AT5G41330.1 | 27.052 | 329 | 186 | 12 | 8 | 307 | 13 | 316 | 7.27e-22 | 96.7 |
| Msa1370420 | AT3G09030.1 | 27.624 | 362 | 218 | 15 | 7 | 345 | 9 | 349 | 1.06e-16 | 81.3 |
Find 68 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACCTATAACAATATTGTT+AGG | 0.275446 | tig0019129:+1849 | None:intergenic |
| TAATTGTTATATTAGTCTTT+TGG | 0.277372 | tig0019129:-1499 | Msa1370420:CDS |
| GACCCTAACAATATTGTTAT+AGG | 0.314276 | tig0019129:-1852 | Msa1370420:CDS |
| GTTTGAGGAATTGGGTTTCA+TGG | 0.325807 | tig0019129:-1352 | Msa1370420:CDS |
| GGTGAATGAGTTTGAGGAAT+TGG | 0.341336 | tig0019129:-1361 | Msa1370420:CDS |
| ATGAATATGGTGTTGGTGTT+TGG | 0.349958 | tig0019129:-1653 | Msa1370420:CDS |
| TGGAATCTGTTACAAGATAA+TGG | 0.353958 | tig0019129:-2236 | Msa1370420:CDS |
| TGAATATGGTGTTGGTGTTT+GGG | 0.354115 | tig0019129:-1652 | Msa1370420:CDS |
| GGTGTTTGGGATCAAGTTAC+TGG | 0.372623 | tig0019129:-1639 | Msa1370420:CDS |
| AGATTGTCTTGTTCTGTTCA+AGG | 0.379858 | tig0019129:-2029 | Msa1370420:CDS |
| GGTTTGTTTAGTTCTCATAA+TGG | 0.395752 | tig0019129:-1792 | Msa1370420:CDS |
| GATAAGCTTCAATGGTTAGA+AGG | 0.398339 | tig0019129:-1564 | Msa1370420:CDS |
| GCATGGTTCATGTTTATGAT+TGG | 0.399840 | tig0019129:-1938 | Msa1370420:CDS |
| GTGCAATGTTAGATGAGAAT+TGG | 0.402672 | tig0019129:-2256 | Msa1370420:CDS |
| GGGGTCAATTTGATGGTAAT+AGG | 0.406966 | tig0019129:-2055 | Msa1370420:CDS |
| GCAAAGTGGGGTCAATTTGA+TGG | 0.408967 | tig0019129:-2062 | Msa1370420:CDS |
| CTTTGATAATCAAGATTAAG+AGG | 0.412692 | tig0019129:+1897 | None:intergenic |
| AAAGGAAGGAGTAATGAATA+TGG | 0.413587 | tig0019129:-1666 | Msa1370420:CDS |
| GTGAATGAGTTTGAGGAATT+GGG | 0.415612 | tig0019129:-1360 | Msa1370420:CDS |
| GCTAGAAAATAATTTATAAT+CGG | 0.422787 | tig0019129:+1692 | None:intergenic |
| TGGTCGTGGTGATGGTGGAA+TGG | 0.427839 | tig0019129:-1814 | Msa1370420:CDS |
| ATCTTAGATCTGCTACGAAC+AGG | 0.436194 | tig0019129:-2170 | Msa1370420:CDS |
| GTTCTCATAATGGTGAACTT+AGG | 0.437286 | tig0019129:-1782 | Msa1370420:CDS |
| AAACTCATTCACCACACAAA+TGG | 0.445408 | tig0019129:+1371 | None:intergenic |
| TTAGAGAGAAGAAAATGGTT+TGG | 0.451539 | tig0019129:-1473 | Msa1370420:CDS |
| GAGCCTTTAGGTTGGTCACT+TGG | 0.452125 | tig0019129:-1594 | Msa1370420:CDS |
| GGTCGTGGTGATGGTGGAAT+GGG | 0.462939 | tig0019129:-1813 | Msa1370420:CDS |
| GTCTGATGTAGGTGCTACTT+TGG | 0.469841 | tig0019129:-1445 | Msa1370420:CDS |
| CTTTGGCTGTGGATGAGAAA+AGG | 0.471495 | tig0019129:-1428 | Msa1370420:CDS |
| GCAACACAACAACCACCATC+TGG | 0.471839 | tig0019129:+1969 | None:intergenic |
| CACCTATAACAATATTGTTA+GGG | 0.476026 | tig0019129:+1850 | None:intergenic |
| GTTTGGTGTTGGTCTGATGT+AGG | 0.480232 | tig0019129:-1456 | Msa1370420:CDS |
| TTGTGTTGCTCATGGTTGCA+TGG | 0.482790 | tig0019129:-1955 | Msa1370420:CDS |
| AAGAGTCAACGATGTTGGTT+GGG | 0.490562 | tig0019129:-1877 | Msa1370420:CDS |
| AAAGAGTCAACGATGTTGGT+TGG | 0.491520 | tig0019129:-1878 | Msa1370420:CDS |
| CGAATTGCTGTTCCATCACC+AGG | 0.493877 | tig0019129:+1999 | None:intergenic |
| TGCAGGAAGGAATTCTATGT+TGG | 0.496931 | tig0019129:-2279 | Msa1370420:CDS |
| GGTGGTTGTTGTGTTGCTCA+TGG | 0.497436 | tig0019129:-1963 | Msa1370420:CDS |
| CATGTTAAAAGTTATACTGC+TGG | 0.501363 | tig0019129:-1732 | Msa1370420:CDS |
| TTGTGTGGTGAATGAGTTTG+AGG | 0.502881 | tig0019129:-1367 | Msa1370420:CDS |
| AGAAGAAAATGGTTTGGTGT+TGG | 0.511129 | tig0019129:-1467 | Msa1370420:CDS |
| TCATGTTCGTTCTGCAAAGT+GGG | 0.517806 | tig0019129:-2075 | Msa1370420:CDS |
| GTGATGCTGATAAGCTTCAA+TGG | 0.519136 | tig0019129:-1572 | Msa1370420:CDS |
| GCAGGAAGGAATTCTATGTT+GGG | 0.533773 | tig0019129:-2278 | Msa1370420:CDS |
| TGTAGGTGCTACTTTGGCTG+TGG | 0.541754 | tig0019129:-1439 | Msa1370420:CDS |
| TTTGGCTGTGGATGAGAAAA+GGG | 0.543803 | tig0019129:-1427 | Msa1370420:CDS |
| GCAACAACACTTGCAAATGC+AGG | 0.544141 | tig0019129:-2296 | Msa1370420:CDS |
| TATCAAAGAGTCAACGATGT+TGG | 0.555358 | tig0019129:-1882 | Msa1370420:CDS |
| GCAATTCGAGCTGGTCCAGA+TGG | 0.555633 | tig0019129:-1984 | Msa1370420:CDS |
| ATCATGTTCGTTCTGCAAAG+TGG | 0.558182 | tig0019129:-2076 | Msa1370420:CDS |
| CAAGGACAAGCACCTGGTGA+TGG | 0.562689 | tig0019129:-2011 | Msa1370420:CDS |
| GAAAGACTTGGTCGTGGTGA+TGG | 0.564375 | tig0019129:-1822 | Msa1370420:CDS |
| TCACCAAGTGACCAACCTAA+AGG | 0.580966 | tig0019129:+1591 | None:intergenic |
| AGGAGTAATGAATATGGTGT+TGG | 0.583666 | tig0019129:-1660 | Msa1370420:CDS |
| TCTGTTCAAGGACAAGCACC+TGG | 0.591737 | tig0019129:-2017 | Msa1370420:CDS |
| AGACTTGGTCGTGGTGATGG+TGG | 0.593685 | tig0019129:-1819 | Msa1370420:CDS |
| GGTGAGAGATGCAATAGCAA+TGG | 0.603673 | tig0019129:-1406 | Msa1370420:CDS |
| GAGAGATGCAATAGCAATGG+AGG | 0.611212 | tig0019129:-1403 | Msa1370420:CDS |
| AGAGTGAAATTCAACGTAGG+AGG | 0.612116 | tig0019129:-2338 | Msa1370420:CDS |
| GATGGAACAGCAATTCGAGC+TGG | 0.614847 | tig0019129:-1993 | Msa1370420:CDS |
| ATTCGAGCTGGTCCAGATGG+TGG | 0.627982 | tig0019129:-1981 | Msa1370420:CDS |
| GGATAATAATTCCATTTGTG+TGG | 0.643500 | tig0019129:-1382 | Msa1370420:CDS |
| AAAATTCATCGATCGTAACG+CGG | 0.649955 | tig0019129:-2207 | Msa1370420:CDS |
| CAACACTTGCAAATGCAGGA+AGG | 0.654570 | tig0019129:-2292 | Msa1370420:CDS |
| ATAGGTGTAAGTGAAAGACT+TGG | 0.679047 | tig0019129:-1834 | Msa1370420:CDS |
| CATGTTCGTTCTGCAAAGTG+GGG | 0.689762 | tig0019129:-2074 | Msa1370420:CDS |
| GATAGAGTGAAATTCAACGT+AGG | 0.690106 | tig0019129:-2341 | Msa1370420:CDS |
| GTAAGTGAAAGACTTGGTCG+TGG | 0.701643 | tig0019129:-1828 | Msa1370420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCTAGAAAATAATTTATAAT+CGG | + | tig0019129:1987-2006 | None:intergenic | 15.0% |
| !!! | ATATAACAATTATCTTTTCT+TGG | + | tig0019129:2169-2188 | None:intergenic | 15.0% |
| !!! | TAATTGTTATATTAGTCTTT+TGG | - | tig0019129:2177-2196 | Msa1370420:CDS | 15.0% |
| !! | GCTAGAAAATAATTTATAAT+CGG | + | tig0019129:1987-2006 | None:intergenic | 15.0% |
| !!! | ATATAACAATTATCTTTTCT+TGG | + | tig0019129:2169-2188 | None:intergenic | 15.0% |
| !!! | TAATTGTTATATTAGTCTTT+TGG | - | tig0019129:2177-2196 | Msa1370420:CDS | 15.0% |
| !!! | AAATTATTTTCTAGCTGTAA+AGG | - | tig0019129:1992-2011 | Msa1370420:CDS | 20.0% |
| !!! | AAATTATTTTCTAGCTGTAA+AGG | - | tig0019129:1992-2011 | Msa1370420:CDS | 20.0% |
| !! | CTTTGATAATCAAGATTAAG+AGG | + | tig0019129:1782-1801 | None:intergenic | 25.0% |
| ! | CACCTATAACAATATTGTTA+GGG | + | tig0019129:1829-1848 | None:intergenic | 25.0% |
| ! | ACACCTATAACAATATTGTT+AGG | + | tig0019129:1830-1849 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTATGAGCCTTT+AGG | - | tig0019129:2070-2089 | Msa1370420:CDS | 25.0% |
| !! | CTTTGATAATCAAGATTAAG+AGG | + | tig0019129:1782-1801 | None:intergenic | 25.0% |
| ! | CACCTATAACAATATTGTTA+GGG | + | tig0019129:1829-1848 | None:intergenic | 25.0% |
| ! | ACACCTATAACAATATTGTT+AGG | + | tig0019129:1830-1849 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTATGAGCCTTT+AGG | - | tig0019129:2070-2089 | Msa1370420:CDS | 25.0% |
| TGGAATCTGTTACAAGATAA+TGG | - | tig0019129:1440-1459 | Msa1370420:CDS | 30.0% | |
| GACCCTAACAATATTGTTAT+AGG | - | tig0019129:1824-1843 | Msa1370420:CDS | 30.0% | |
| !! | GGTTTGTTTAGTTCTCATAA+TGG | - | tig0019129:1884-1903 | Msa1370420:CDS | 30.0% |
| CATGTTAAAAGTTATACTGC+TGG | - | tig0019129:1944-1963 | Msa1370420:CDS | 30.0% | |
| !!! | TATTTTCTAGCTGTAAAGGA+AGG | - | tig0019129:1996-2015 | Msa1370420:CDS | 30.0% |
| AAAGGAAGGAGTAATGAATA+TGG | - | tig0019129:2010-2029 | Msa1370420:CDS | 30.0% | |
| !!! | TTTTTTATGAGCCTTTAGGT+TGG | - | tig0019129:2074-2093 | Msa1370420:CDS | 30.0% |
| !! | GGATTTTAGAGAGAAGAAAA+TGG | - | tig0019129:2198-2217 | Msa1370420:CDS | 30.0% |
| TTAGAGAGAAGAAAATGGTT+TGG | - | tig0019129:2203-2222 | Msa1370420:CDS | 30.0% | |
| GGATAATAATTCCATTTGTG+TGG | - | tig0019129:2294-2313 | Msa1370420:CDS | 30.0% | |
| TGGAATCTGTTACAAGATAA+TGG | - | tig0019129:1440-1459 | Msa1370420:CDS | 30.0% | |
| GACCCTAACAATATTGTTAT+AGG | - | tig0019129:1824-1843 | Msa1370420:CDS | 30.0% | |
| !! | GGTTTGTTTAGTTCTCATAA+TGG | - | tig0019129:1884-1903 | Msa1370420:CDS | 30.0% |
| CATGTTAAAAGTTATACTGC+TGG | - | tig0019129:1944-1963 | Msa1370420:CDS | 30.0% | |
| !!! | TATTTTCTAGCTGTAAAGGA+AGG | - | tig0019129:1996-2015 | Msa1370420:CDS | 30.0% |
| AAAGGAAGGAGTAATGAATA+TGG | - | tig0019129:2010-2029 | Msa1370420:CDS | 30.0% | |
| !!! | TTTTTTATGAGCCTTTAGGT+TGG | - | tig0019129:2074-2093 | Msa1370420:CDS | 30.0% |
| !! | GGATTTTAGAGAGAAGAAAA+TGG | - | tig0019129:2198-2217 | Msa1370420:CDS | 30.0% |
| TTAGAGAGAAGAAAATGGTT+TGG | - | tig0019129:2203-2222 | Msa1370420:CDS | 30.0% | |
| GGATAATAATTCCATTTGTG+TGG | - | tig0019129:2294-2313 | Msa1370420:CDS | 30.0% | |
| GATAGAGTGAAATTCAACGT+AGG | - | tig0019129:1335-1354 | Msa1370420:CDS | 35.0% | |
| GTGCAATGTTAGATGAGAAT+TGG | - | tig0019129:1420-1439 | Msa1370420:CDS | 35.0% | |
| AAAATTCATCGATCGTAACG+CGG | - | tig0019129:1469-1488 | Msa1370420:CDS | 35.0% | |
| !! | GCTTTTCAGGAACATTTTGA+GGG | + | tig0019129:1544-1563 | None:intergenic | 35.0% |
| !! | AGCTTTTCAGGAACATTTTG+AGG | + | tig0019129:1545-1564 | None:intergenic | 35.0% |
| ! | TCTCTGTAAAGAAGCTTTTC+AGG | + | tig0019129:1557-1576 | None:intergenic | 35.0% |
| ! | TACAGAGAAGCTCTGTTTTA+TGG | - | tig0019129:1569-1588 | Msa1370420:CDS | 35.0% |
| ! | AGATTGTCTTGTTCTGTTCA+AGG | - | tig0019129:1647-1666 | Msa1370420:CDS | 35.0% |
| GCATGGTTCATGTTTATGAT+TGG | - | tig0019129:1738-1757 | Msa1370420:CDS | 35.0% | |
| TATCAAAGAGTCAACGATGT+TGG | - | tig0019129:1794-1813 | Msa1370420:CDS | 35.0% | |
| ATAGGTGTAAGTGAAAGACT+TGG | - | tig0019129:1842-1861 | Msa1370420:CDS | 35.0% | |
| GTTCTCATAATGGTGAACTT+AGG | - | tig0019129:1894-1913 | Msa1370420:CDS | 35.0% | |
| AGGAGTAATGAATATGGTGT+TGG | - | tig0019129:2016-2035 | Msa1370420:CDS | 35.0% | |
| !! | ATGAATATGGTGTTGGTGTT+TGG | - | tig0019129:2023-2042 | Msa1370420:CDS | 35.0% |
| !! | TGAATATGGTGTTGGTGTTT+GGG | - | tig0019129:2024-2043 | Msa1370420:CDS | 35.0% |
| GATAAGCTTCAATGGTTAGA+AGG | - | tig0019129:2112-2131 | Msa1370420:CDS | 35.0% | |
| !! | AGAAGAAAATGGTTTGGTGT+TGG | - | tig0019129:2209-2228 | Msa1370420:CDS | 35.0% |
| AAACTCATTCACCACACAAA+TGG | + | tig0019129:2308-2327 | None:intergenic | 35.0% | |
| GTGAATGAGTTTGAGGAATT+GGG | - | tig0019129:2316-2335 | Msa1370420:CDS | 35.0% | |
| GATAGAGTGAAATTCAACGT+AGG | - | tig0019129:1335-1354 | Msa1370420:CDS | 35.0% | |
| GTGCAATGTTAGATGAGAAT+TGG | - | tig0019129:1420-1439 | Msa1370420:CDS | 35.0% | |
| AAAATTCATCGATCGTAACG+CGG | - | tig0019129:1469-1488 | Msa1370420:CDS | 35.0% | |
| !! | GCTTTTCAGGAACATTTTGA+GGG | + | tig0019129:1544-1563 | None:intergenic | 35.0% |
| !! | AGCTTTTCAGGAACATTTTG+AGG | + | tig0019129:1545-1564 | None:intergenic | 35.0% |
| ! | TCTCTGTAAAGAAGCTTTTC+AGG | + | tig0019129:1557-1576 | None:intergenic | 35.0% |
| ! | TACAGAGAAGCTCTGTTTTA+TGG | - | tig0019129:1569-1588 | Msa1370420:CDS | 35.0% |
| ! | AGATTGTCTTGTTCTGTTCA+AGG | - | tig0019129:1647-1666 | Msa1370420:CDS | 35.0% |
| GCATGGTTCATGTTTATGAT+TGG | - | tig0019129:1738-1757 | Msa1370420:CDS | 35.0% | |
| TATCAAAGAGTCAACGATGT+TGG | - | tig0019129:1794-1813 | Msa1370420:CDS | 35.0% | |
| ATAGGTGTAAGTGAAAGACT+TGG | - | tig0019129:1842-1861 | Msa1370420:CDS | 35.0% | |
| GTTCTCATAATGGTGAACTT+AGG | - | tig0019129:1894-1913 | Msa1370420:CDS | 35.0% | |
| AGGAGTAATGAATATGGTGT+TGG | - | tig0019129:2016-2035 | Msa1370420:CDS | 35.0% | |
| !! | ATGAATATGGTGTTGGTGTT+TGG | - | tig0019129:2023-2042 | Msa1370420:CDS | 35.0% |
| !! | TGAATATGGTGTTGGTGTTT+GGG | - | tig0019129:2024-2043 | Msa1370420:CDS | 35.0% |
| GATAAGCTTCAATGGTTAGA+AGG | - | tig0019129:2112-2131 | Msa1370420:CDS | 35.0% | |
| !! | AGAAGAAAATGGTTTGGTGT+TGG | - | tig0019129:2209-2228 | Msa1370420:CDS | 35.0% |
| AAACTCATTCACCACACAAA+TGG | + | tig0019129:2308-2327 | None:intergenic | 35.0% | |
| GTGAATGAGTTTGAGGAATT+GGG | - | tig0019129:2316-2335 | Msa1370420:CDS | 35.0% | |
| AGAGTGAAATTCAACGTAGG+AGG | - | tig0019129:1338-1357 | Msa1370420:CDS | 40.0% | |
| TGCAGGAAGGAATTCTATGT+TGG | - | tig0019129:1397-1416 | Msa1370420:CDS | 40.0% | |
| GCAGGAAGGAATTCTATGTT+GGG | - | tig0019129:1398-1417 | Msa1370420:CDS | 40.0% | |
| ATCTTAGATCTGCTACGAAC+AGG | - | tig0019129:1506-1525 | Msa1370420:CDS | 40.0% | |
| ATCATGTTCGTTCTGCAAAG+TGG | - | tig0019129:1600-1619 | Msa1370420:CDS | 40.0% | |
| TCATGTTCGTTCTGCAAAGT+GGG | - | tig0019129:1601-1620 | Msa1370420:CDS | 40.0% | |
| ! | GGGGTCAATTTGATGGTAAT+AGG | - | tig0019129:1621-1640 | Msa1370420:CDS | 40.0% |
| AAAGAGTCAACGATGTTGGT+TGG | - | tig0019129:1798-1817 | Msa1370420:CDS | 40.0% | |
| ! | AAGAGTCAACGATGTTGGTT+GGG | - | tig0019129:1799-1818 | Msa1370420:CDS | 40.0% |
| GTGATGCTGATAAGCTTCAA+TGG | - | tig0019129:2104-2123 | Msa1370420:CDS | 40.0% | |
| TTTGGCTGTGGATGAGAAAA+GGG | - | tig0019129:2249-2268 | Msa1370420:CDS | 40.0% | |
| TTGTGTGGTGAATGAGTTTG+AGG | - | tig0019129:2309-2328 | Msa1370420:CDS | 40.0% | |
| GGTGAATGAGTTTGAGGAAT+TGG | - | tig0019129:2315-2334 | Msa1370420:CDS | 40.0% | |
| GTTTGAGGAATTGGGTTTCA+TGG | - | tig0019129:2324-2343 | Msa1370420:CDS | 40.0% | |
| AGAGTGAAATTCAACGTAGG+AGG | - | tig0019129:1338-1357 | Msa1370420:CDS | 40.0% | |
| TGCAGGAAGGAATTCTATGT+TGG | - | tig0019129:1397-1416 | Msa1370420:CDS | 40.0% | |
| GCAGGAAGGAATTCTATGTT+GGG | - | tig0019129:1398-1417 | Msa1370420:CDS | 40.0% | |
| ATCTTAGATCTGCTACGAAC+AGG | - | tig0019129:1506-1525 | Msa1370420:CDS | 40.0% | |
| ATCATGTTCGTTCTGCAAAG+TGG | - | tig0019129:1600-1619 | Msa1370420:CDS | 40.0% | |
| TCATGTTCGTTCTGCAAAGT+GGG | - | tig0019129:1601-1620 | Msa1370420:CDS | 40.0% | |
| ! | GGGGTCAATTTGATGGTAAT+AGG | - | tig0019129:1621-1640 | Msa1370420:CDS | 40.0% |
| AAAGAGTCAACGATGTTGGT+TGG | - | tig0019129:1798-1817 | Msa1370420:CDS | 40.0% | |
| ! | AAGAGTCAACGATGTTGGTT+GGG | - | tig0019129:1799-1818 | Msa1370420:CDS | 40.0% |
| GTGATGCTGATAAGCTTCAA+TGG | - | tig0019129:2104-2123 | Msa1370420:CDS | 40.0% | |
| TTTGGCTGTGGATGAGAAAA+GGG | - | tig0019129:2249-2268 | Msa1370420:CDS | 40.0% | |
| TTGTGTGGTGAATGAGTTTG+AGG | - | tig0019129:2309-2328 | Msa1370420:CDS | 40.0% | |
| GGTGAATGAGTTTGAGGAAT+TGG | - | tig0019129:2315-2334 | Msa1370420:CDS | 40.0% | |
| GTTTGAGGAATTGGGTTTCA+TGG | - | tig0019129:2324-2343 | Msa1370420:CDS | 40.0% | |
| GCAACAACACTTGCAAATGC+AGG | - | tig0019129:1380-1399 | Msa1370420:CDS | 45.0% | |
| CAACACTTGCAAATGCAGGA+AGG | - | tig0019129:1384-1403 | Msa1370420:CDS | 45.0% | |
| CATGTTCGTTCTGCAAAGTG+GGG | - | tig0019129:1602-1621 | Msa1370420:CDS | 45.0% | |
| GCAAAGTGGGGTCAATTTGA+TGG | - | tig0019129:1614-1633 | Msa1370420:CDS | 45.0% | |
| ! | TTGTGTTGCTCATGGTTGCA+TGG | - | tig0019129:1721-1740 | Msa1370420:CDS | 45.0% |
| ! | GTAAGTGAAAGACTTGGTCG+TGG | - | tig0019129:1848-1867 | Msa1370420:CDS | 45.0% |
| ! | GGTGTTTGGGATCAAGTTAC+TGG | - | tig0019129:2037-2056 | Msa1370420:CDS | 45.0% |
| TCACCAAGTGACCAACCTAA+AGG | + | tig0019129:2088-2107 | None:intergenic | 45.0% | |
| !! | GTTTGGTGTTGGTCTGATGT+AGG | - | tig0019129:2220-2239 | Msa1370420:CDS | 45.0% |
| !! | GTCTGATGTAGGTGCTACTT+TGG | - | tig0019129:2231-2250 | Msa1370420:CDS | 45.0% |
| CTTTGGCTGTGGATGAGAAA+AGG | - | tig0019129:2248-2267 | Msa1370420:CDS | 45.0% | |
| GGTGAGAGATGCAATAGCAA+TGG | - | tig0019129:2270-2289 | Msa1370420:CDS | 45.0% | |
| GAGAGATGCAATAGCAATGG+AGG | - | tig0019129:2273-2292 | Msa1370420:CDS | 45.0% | |
| GCAACAACACTTGCAAATGC+AGG | - | tig0019129:1380-1399 | Msa1370420:CDS | 45.0% | |
| CAACACTTGCAAATGCAGGA+AGG | - | tig0019129:1384-1403 | Msa1370420:CDS | 45.0% | |
| CATGTTCGTTCTGCAAAGTG+GGG | - | tig0019129:1602-1621 | Msa1370420:CDS | 45.0% | |
| GCAAAGTGGGGTCAATTTGA+TGG | - | tig0019129:1614-1633 | Msa1370420:CDS | 45.0% | |
| ! | TTGTGTTGCTCATGGTTGCA+TGG | - | tig0019129:1721-1740 | Msa1370420:CDS | 45.0% |
| ! | GTAAGTGAAAGACTTGGTCG+TGG | - | tig0019129:1848-1867 | Msa1370420:CDS | 45.0% |
| ! | GGTGTTTGGGATCAAGTTAC+TGG | - | tig0019129:2037-2056 | Msa1370420:CDS | 45.0% |
| TCACCAAGTGACCAACCTAA+AGG | + | tig0019129:2088-2107 | None:intergenic | 45.0% | |
| !! | GTTTGGTGTTGGTCTGATGT+AGG | - | tig0019129:2220-2239 | Msa1370420:CDS | 45.0% |
| !! | GTCTGATGTAGGTGCTACTT+TGG | - | tig0019129:2231-2250 | Msa1370420:CDS | 45.0% |
| CTTTGGCTGTGGATGAGAAA+AGG | - | tig0019129:2248-2267 | Msa1370420:CDS | 45.0% | |
| GGTGAGAGATGCAATAGCAA+TGG | - | tig0019129:2270-2289 | Msa1370420:CDS | 45.0% | |
| GAGAGATGCAATAGCAATGG+AGG | - | tig0019129:2273-2292 | Msa1370420:CDS | 45.0% | |
| TCTGTTCAAGGACAAGCACC+TGG | - | tig0019129:1659-1678 | Msa1370420:CDS | 50.0% | |
| ! | CGAATTGCTGTTCCATCACC+AGG | + | tig0019129:1680-1699 | None:intergenic | 50.0% |
| GATGGAACAGCAATTCGAGC+TGG | - | tig0019129:1683-1702 | Msa1370420:CDS | 50.0% | |
| GCAACACAACAACCACCATC+TGG | + | tig0019129:1710-1729 | None:intergenic | 50.0% | |
| ! | GGTGGTTGTTGTGTTGCTCA+TGG | - | tig0019129:1713-1732 | Msa1370420:CDS | 50.0% |
| ! | GAAAGACTTGGTCGTGGTGA+TGG | - | tig0019129:1854-1873 | Msa1370420:CDS | 50.0% |
| !! | GAGCCTTTAGGTTGGTCACT+TGG | - | tig0019129:2082-2101 | Msa1370420:CDS | 50.0% |
| !! | TGTAGGTGCTACTTTGGCTG+TGG | - | tig0019129:2237-2256 | Msa1370420:CDS | 50.0% |
| TCTGTTCAAGGACAAGCACC+TGG | - | tig0019129:1659-1678 | Msa1370420:CDS | 50.0% | |
| ! | CGAATTGCTGTTCCATCACC+AGG | + | tig0019129:1680-1699 | None:intergenic | 50.0% |
| GATGGAACAGCAATTCGAGC+TGG | - | tig0019129:1683-1702 | Msa1370420:CDS | 50.0% | |
| GCAACACAACAACCACCATC+TGG | + | tig0019129:1710-1729 | None:intergenic | 50.0% | |
| ! | GGTGGTTGTTGTGTTGCTCA+TGG | - | tig0019129:1713-1732 | Msa1370420:CDS | 50.0% |
| ! | GAAAGACTTGGTCGTGGTGA+TGG | - | tig0019129:1854-1873 | Msa1370420:CDS | 50.0% |
| !! | GAGCCTTTAGGTTGGTCACT+TGG | - | tig0019129:2082-2101 | Msa1370420:CDS | 50.0% |
| !! | TGTAGGTGCTACTTTGGCTG+TGG | - | tig0019129:2237-2256 | Msa1370420:CDS | 50.0% |
| CAAGGACAAGCACCTGGTGA+TGG | - | tig0019129:1665-1684 | Msa1370420:CDS | 55.0% | |
| GCAATTCGAGCTGGTCCAGA+TGG | - | tig0019129:1692-1711 | Msa1370420:CDS | 55.0% | |
| ATTCGAGCTGGTCCAGATGG+TGG | - | tig0019129:1695-1714 | Msa1370420:CDS | 55.0% | |
| !! | AGACTTGGTCGTGGTGATGG+TGG | - | tig0019129:1857-1876 | Msa1370420:CDS | 55.0% |
| !! | TGGTCGTGGTGATGGTGGAA+TGG | - | tig0019129:1862-1881 | Msa1370420:CDS | 55.0% |
| !! | GGTCGTGGTGATGGTGGAAT+GGG | - | tig0019129:1863-1882 | Msa1370420:CDS | 55.0% |
| CAAGGACAAGCACCTGGTGA+TGG | - | tig0019129:1665-1684 | Msa1370420:CDS | 55.0% | |
| GCAATTCGAGCTGGTCCAGA+TGG | - | tig0019129:1692-1711 | Msa1370420:CDS | 55.0% | |
| ATTCGAGCTGGTCCAGATGG+TGG | - | tig0019129:1695-1714 | Msa1370420:CDS | 55.0% | |
| !! | AGACTTGGTCGTGGTGATGG+TGG | - | tig0019129:1857-1876 | Msa1370420:CDS | 55.0% |
| !! | TGGTCGTGGTGATGGTGGAA+TGG | - | tig0019129:1862-1881 | Msa1370420:CDS | 55.0% |
| !! | GGTCGTGGTGATGGTGGAAT+GGG | - | tig0019129:1863-1882 | Msa1370420:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019129 | gene | 1320 | 2378 | 1320 | ID=Msa1370420;Name=Msa1370420 |
| tig0019129 | mRNA | 1320 | 2378 | 1320 | ID=Msa1370420-mRNA-1;Parent=Msa1370420;Name=Msa1370420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|352 |
| tig0019129 | exon | 1320 | 2378 | 1320 | ID=Msa1370420-mRNA-1:exon:1731;Parent=Msa1370420-mRNA-1 |
| tig0019129 | CDS | 1320 | 2378 | 1320 | ID=Msa1370420-mRNA-1:cds;Parent=Msa1370420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
