AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1265990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265990 MtrunA17_Chr4g0071071 95.652 322 14 0 1 322 28 349 0.0 617
Msa1265990 MtrunA17_Chr2g0299421 72.325 271 70 3 57 322 1 271 8.94e-142 401
Msa1265990 MtrunA17_Chr4g0071091 66.154 260 87 1 57 315 1 260 2.95e-132 377
Msa1265990 MtrunA17_Chr2g0299401 67.045 264 82 3 64 322 4 267 3.77e-126 361
Msa1265990 MtrunA17_Chr2g0299461 57.468 308 77 3 69 322 8 315 2.63e-119 346
Msa1265990 MtrunA17_Chr1g0151361 62.745 255 92 2 68 321 7 259 7.09e-113 328
Msa1265990 MtrunA17_Chr2g0299391 61.417 254 96 2 69 320 15 268 6.70e-108 316
Msa1265990 MtrunA17_Chr1g0151381 45.070 142 58 2 173 313 5 127 3.58e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265990 AT3G47590.1 60.219 274 107 2 43 316 34 305 1.03e-120 349
Msa1265990 AT1G29840.1 54.693 309 129 4 10 316 9 308 6.94e-119 345
Msa1265990 AT3G47560.1 63.035 257 94 1 65 321 6 261 1.53e-117 340
Msa1265990 AT3G47560.4 59.140 279 113 1 43 321 20 297 2.20e-117 341
Msa1265990 AT3G47560.3 57.447 282 95 1 65 321 6 287 1.79e-113 330
Msa1265990 AT5G11910.1 60.474 253 99 1 62 313 15 267 2.85e-111 325
Msa1265990 AT3G47560.5 57.042 284 94 2 65 321 6 288 2.96e-111 325
Msa1265990 AT5G11910.4 60.474 253 99 1 62 313 33 285 3.06e-111 326
Msa1265990 AT3G47560.2 52.427 309 95 2 65 321 6 314 2.15e-107 316
Msa1265990 AT2G19550.1 61.508 252 89 5 70 316 5 253 4.49e-105 310
Msa1265990 AT3G47590.2 58.564 181 74 1 43 223 34 213 3.45e-75 231
Msa1265990 AT5G11910.3 60.959 146 57 0 62 207 33 178 1.08e-60 192
Msa1265990 AT5G11910.2 60.959 146 57 0 62 207 15 160 1.13e-60 191

Find 89 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCGTTGTTTCTGAATA+TGG 0.102039 8_2:-70703151 Msa1265990:exon
CTGATTCTTCTTCTGGTTAC+TGG 0.132186 8_2:+70703006 None:intergenic
CTGTATTAGTTACAAGTTTA+AGG 0.132500 8_2:+70698236 None:intergenic
TGCAAGGGTAAGTGAATAAT+TGG 0.233596 8_2:-70703178 Msa1265990:five_prime_UTR
GGTGCTTCTGATTCTTCTTC+TGG 0.236849 8_2:+70702999 None:intergenic
CTTCATGCATATTTGTATTT+AGG 0.242010 8_2:+70699562 None:intergenic
AAGTTCATACAATTAATTAA+AGG 0.263972 8_2:+70698346 None:intergenic
TATGATGTACCGTGTTATTT+TGG 0.266060 8_2:-70698511 Msa1265990:three_prime_UTR
GTGGGTATATTGCAAGATTC+TGG 0.270892 8_2:-70702788 Msa1265990:CDS
TCGCCAAACGGTTTGATTCT+AGG 0.277406 8_2:+70701094 None:intergenic
TTGTTTAAGGTCGATTAAAA+AGG 0.307143 8_2:+70703333 None:intergenic
ATAACACGGTACATCATATC+AGG 0.319431 8_2:+70698516 None:intergenic
TCTGGTTACTGGTTTGTGAT+TGG 0.324929 8_2:+70703017 None:intergenic
CTGGTTACTGGTTTGTGATT+GGG 0.331559 8_2:+70703018 None:intergenic
AAGCTTTGTTGAGTAATAGA+TGG 0.333006 8_2:+70698312 None:intergenic
AAGAAACCATACACCAAGAT+AGG 0.333809 8_2:-70698670 Msa1265990:CDS
AGGTTATATGGAAAGAATTA+AGG 0.342347 8_2:-70700266 Msa1265990:CDS
AAATCGTTGTTTCTGAATAT+GGG 0.349623 8_2:-70703150 Msa1265990:exon
GCGCCTTGGAAAAGGTTATA+TGG 0.368501 8_2:-70700278 Msa1265990:CDS
TGTGACTCTGGAAAGTTTGC+TGG 0.387742 8_2:-70699589 Msa1265990:CDS
CGTTTGGCGACTGCAATTGT+TGG 0.419231 8_2:-70701081 Msa1265990:CDS
GTGAGTGGTTTGGTAAAATC+TGG 0.429615 8_2:+70698771 None:intergenic
GGTGAACCTTGCTGCTGCAT+TGG 0.431520 8_2:-70702625 Msa1265990:CDS
AGTGATGGTTCGTTTCAGTA+TGG 0.432436 8_2:-70701165 Msa1265990:CDS
GATGGTGCACACCACCAGTA+TGG 0.438952 8_2:-70698470 Msa1265990:three_prime_UTR
AGTATCCCTATCTTGGTGTA+TGG 0.442733 8_2:+70698664 None:intergenic
TCAGACACCGTTATATCTGT+TGG 0.445284 8_2:-70698812 Msa1265990:CDS
TTTCCTAGAATCAAACCGTT+TGG 0.448265 8_2:-70701097 Msa1265990:CDS
CGTTTCAGTATGGCAACTAC+TGG 0.448611 8_2:-70701155 Msa1265990:CDS
ATTGCAAGATTCTGGAACTA+AGG 0.452028 8_2:-70702780 Msa1265990:CDS
AAAGCAGTCGTCAATCTCTC+TGG 0.452378 8_2:-70700331 Msa1265990:CDS
AAGCTCAAAGAGTGGGAACT+AGG 0.453158 8_2:+70698423 None:intergenic
AAATTGAATGACTGATCAAT+TGG 0.456670 8_2:-70703303 Msa1265990:five_prime_UTR
AGAGAGACATGTTGAAGTTG+AGG 0.459065 8_2:+70702977 None:intergenic
ATTGAAGAGCGCCTTGGAAA+AGG 0.461660 8_2:-70700286 Msa1265990:CDS
CACTCACTACATATCATAGA+AGG 0.462333 8_2:-70698755 Msa1265990:CDS
TTCTAGGAAATGTTGAGTTA+CGG 0.463130 8_2:+70701110 None:intergenic
TTCATTGACGTGAAGAGGCC+AGG 0.465444 8_2:-70700235 Msa1265990:intron
GTTTGGCGACTGCAATTGTT+GGG 0.465715 8_2:-70701080 Msa1265990:CDS
GAGAGACATGTTGAAGTTGA+GGG 0.475518 8_2:+70702978 None:intergenic
ATGCAGCAGCAAGGTTCACC+AGG 0.479335 8_2:+70702628 None:intergenic
TTACCTAAGTATCCCTATCT+TGG 0.483862 8_2:+70698657 None:intergenic
TTCCGACTACCGTGTGACTC+TGG 0.484923 8_2:-70699601 Msa1265990:CDS
ATGGAAAGAATTAAGGAGGA+TGG 0.490882 8_2:-70700259 Msa1265990:CDS
GATGATGAATTTGATAATAG+TGG 0.496054 8_2:+70703096 None:intergenic
ACTGATCAATTGGTTGGTCT+TGG 0.498258 8_2:-70703293 Msa1265990:five_prime_UTR
ACACCAAGATAGGGATACTT+AGG 0.498887 8_2:-70698660 Msa1265990:intron
GCAATTGTTGGGCACAGTAA+AGG 0.505246 8_2:-70701069 Msa1265990:intron
AACGGCAGAACAATATTGTT+CGG 0.509171 8_2:-70698550 Msa1265990:three_prime_UTR
CTAACGAAGCTAGCTCATCT+TGG 0.510470 8_2:+70698708 None:intergenic
CAACTACTGGAGAGAGGCTG+AGG 0.515668 8_2:-70701142 Msa1265990:CDS
GACAGGGTCCTTACAGTTCA+CGG 0.517524 8_2:-70698839 Msa1265990:intron
TGCATTCTTTATCAATCTGA+AGG 0.518096 8_2:+70699535 None:intergenic
TGCATCTCCAACAGATATAA+CGG 0.525489 8_2:+70698805 None:intergenic
CATTATTGATTATGAGCTGA+TGG 0.525637 8_2:-70698488 Msa1265990:three_prime_UTR
CTGAAGAACCGTGAACTGTA+AGG 0.530377 8_2:+70698831 None:intergenic
CAACAATTGCAGTCGCCAAA+CGG 0.531049 8_2:+70701082 None:intergenic
TCATCTTGGTGATTAGTGTA+GGG 0.532866 8_2:+70698722 None:intergenic
AGCTTTGTTGAGTAATAGAT+GGG 0.534458 8_2:+70698313 None:intergenic
CTCATCTTGGTGATTAGTGT+AGG 0.538424 8_2:+70698721 None:intergenic
GGTCTTGGTGAGATATTCGC+TGG 0.543294 8_2:-70703278 Msa1265990:five_prime_UTR
AGAAACCATACACCAAGATA+GGG 0.545738 8_2:-70698669 Msa1265990:CDS
ATGGTTTCATTGACGTGAAG+AGG 0.545822 8_2:-70700240 Msa1265990:CDS
CTCTGGACGCTATGATCTGA+AGG 0.547034 8_2:-70700314 Msa1265990:CDS
CTTCTATGATATGTAGTGAG+TGG 0.547715 8_2:+70698756 None:intergenic
TGTGCTCTCTATAATTTGCA+AGG 0.556453 8_2:-70703194 Msa1265990:five_prime_UTR
TTCATTATTTCAATATCACC+AGG 0.559428 8_2:-70703058 Msa1265990:CDS
ATGATATGTAGTGAGTGGTT+TGG 0.561435 8_2:+70698761 None:intergenic
TTCCAGAGTCACACGGTAGT+CGG 0.565937 8_2:+70699599 None:intergenic
TGGTGATATTGAAATAATGA+AGG 0.566758 8_2:+70703060 None:intergenic
GATGGAATTGAAGAGCGCCT+TGG 0.568111 8_2:-70700292 Msa1265990:CDS
TTCAGATTGATAAAGAATGC+AGG 0.571124 8_2:-70699533 Msa1265990:intron
TGAATGACTGATCAATTGGT+TGG 0.577242 8_2:-70703299 Msa1265990:five_prime_UTR
GAGATTGTAATCTTGTGCCA+TGG 0.584009 8_2:-70702758 Msa1265990:CDS
TGAGTGGTTTGGTAAAATCT+GGG 0.584588 8_2:+70698772 None:intergenic
TAAACTTGTAACTAATACAG+TGG 0.588472 8_2:-70698233 Msa1265990:three_prime_UTR
GGACGCTATGATCTGAAGGA+TGG 0.595304 8_2:-70700310 Msa1265990:CDS
TAACACGGTACATCATATCA+GGG 0.595994 8_2:+70698517 None:intergenic
GTCATAATACCCAATAAGCA+TGG 0.602475 8_2:-70702821 Msa1265990:CDS
TTATATGGAAAGAATTAAGG+AGG 0.617189 8_2:-70700263 Msa1265990:CDS
AAACTTGTAACTAATACAGT+GGG 0.636851 8_2:-70698232 Msa1265990:three_prime_UTR
GTGCTCTCTATAATTTGCAA+GGG 0.645308 8_2:-70703193 Msa1265990:five_prime_UTR
GTATGGCAACTACTGGAGAG+AGG 0.653608 8_2:-70701148 Msa1265990:CDS
TCTTGATGTAGGTGGTGGTG+TGG 0.654415 8_2:-70700386 Msa1265990:intron
TCAATAATGCCAAAATAACA+CGG 0.678115 8_2:+70698502 None:intergenic
TGCAGCAGCAAGGTTCACCA+GGG 0.686910 8_2:+70702629 None:intergenic
GCAAACTTTCCAGAGTCACA+CGG 0.699981 8_2:+70699592 None:intergenic
GAGAGCTGCTATATATCACG+AGG 0.701468 8_2:+70703249 None:intergenic
AACACGGTACATCATATCAG+GGG 0.705482 8_2:+70698518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAACAGTTTAAATT+TGG + chr8_2:70699068-70699087 None:intergenic 10.0%
!!! TAATATCTTTTTTATACTAA+AGG + chr8_2:70700228-70700247 None:intergenic 10.0%
!! TGAATAATTAAACTATTATT+AGG - chr8_2:70701133-70701152 Msa1265990:CDS 10.0%
!!! TATTAATTTAATCTCAATTT+TGG - chr8_2:70702594-70702613 Msa1265990:CDS 10.0%
!!! CAATTTATTTTGTTTGTTTA+AGG + chr8_2:70698235-70698254 None:intergenic 15.0%
!! AGATATTATAACATATAAGT+TGG - chr8_2:70700240-70700259 Msa1265990:CDS 15.0%
!! GATATTATAACATATAAGTT+GGG - chr8_2:70700241-70700260 Msa1265990:CDS 15.0%
!! TACTAAATATAATGCAATAA+TGG + chr8_2:70700635-70700654 None:intergenic 15.0%
!!! ATGTTCTTTTTATTTGTAAT+TGG - chr8_2:70701033-70701052 Msa1265990:intron 15.0%
!!! TGTTCTTTTTATTTGTAATT+GGG - chr8_2:70701034-70701053 Msa1265990:intron 15.0%
!!! ATGGTCTAAAATTTAAAATT+TGG - chr8_2:70701505-70701524 Msa1265990:intron 15.0%
!!! TGGTCTAAAATTTAAAATTT+GGG - chr8_2:70701506-70701525 Msa1265990:intron 15.0%
!! AATGTAATTTGACAAAATTA+GGG + chr8_2:70701570-70701589 None:intergenic 15.0%
!! TTTAAACTCTACATAAATAA+AGG - chr8_2:70702194-70702213 Msa1265990:intron 15.0%
!! TTTGAACAAATAAAAATCAT+TGG + chr8_2:70702222-70702241 None:intergenic 15.0%
!! TACATTCATAAAATTGAATA+AGG - chr8_2:70702483-70702502 Msa1265990:intron 15.0%
!! AAGTTCATACAATTAATTAA+AGG + chr8_2:70703209-70703228 None:intergenic 15.0%
!!! ATAAAAGAAACAAACTTTTG+AGG + chr8_2:70698828-70698847 None:intergenic 20.0%
!!! AAAACATAATGGATGAAATT+GGG + chr8_2:70698882-70698901 None:intergenic 20.0%
!! ATACCAATGTTATATAACAT+TGG - chr8_2:70699479-70699498 Msa1265990:intron 20.0%
!! ATACCAATGTTATATAACAT+TGG + chr8_2:70699479-70699498 None:intergenic 20.0%
!! ATTATGACATGTTTATTGTT+TGG + chr8_2:70699827-70699846 None:intergenic 20.0%
!!! GATATTTAAAGATTGCATTT+TGG - chr8_2:70700570-70700589 Msa1265990:intron 20.0%
!!! ATTTCAATATTGACTAAGTT+AGG + chr8_2:70700789-70700808 None:intergenic 20.0%
!! TTAGTCAATATTGAAATAGA+AGG - chr8_2:70700792-70700811 Msa1265990:intron 20.0%
!! TTACTATTATTCAAACATAC+AGG - chr8_2:70700903-70700922 Msa1265990:intron 20.0%
!!! GTTCTTTTTATTTGTAATTG+GGG - chr8_2:70701035-70701054 Msa1265990:intron 20.0%
!! GAATGTAATTTGACAAAATT+AGG + chr8_2:70701571-70701590 None:intergenic 20.0%
!! TTACATTCTATTAAATGATC+TGG - chr8_2:70701583-70701602 Msa1265990:intron 20.0%
!! TATACTTTCTCAACAAAAAA+GGG + chr8_2:70702099-70702118 None:intergenic 20.0%
!! TTCATAAAATTGAATAAGGT+TGG - chr8_2:70702487-70702506 Msa1265990:intron 20.0%
!! TCATAAAATTGAATAAGGTT+GGG - chr8_2:70702488-70702507 Msa1265990:intron 20.0%
!! TTAAAATATCAAGAGTGATT+AGG + chr8_2:70702566-70702585 None:intergenic 20.0%
!! AAATCATGTAATATATGACA+GGG - chr8_2:70702697-70702716 Msa1265990:intron 20.0%
! AAATTGAATGACTGATCAAT+TGG - chr8_2:70698249-70698268 Msa1265990:three_prime_UTR 25.0%
!!! TAAATCGTTGTTTCTGAATA+TGG - chr8_2:70698401-70698420 Msa1265990:intron 25.0%
!!! AAATCGTTGTTTCTGAATAT+GGG - chr8_2:70698402-70698421 Msa1265990:intron 25.0%
!! GATGATGAATTTGATAATAG+TGG + chr8_2:70698459-70698478 None:intergenic 25.0%
! TGGTGATATTGAAATAATGA+AGG + chr8_2:70698495-70698514 None:intergenic 25.0%
! TTCATTATTTCAATATCACC+AGG - chr8_2:70698494-70698513 Msa1265990:three_prime_UTR 25.0%
!! AATTTTTCACCATGCTTATT+GGG + chr8_2:70698743-70698762 None:intergenic 25.0%
!! TAATTTTTCACCATGCTTAT+TGG + chr8_2:70698744-70698763 None:intergenic 25.0%
!!! GAAAACATAATGGATGAAAT+TGG + chr8_2:70698883-70698902 None:intergenic 25.0%
! CTGAAGATAAGAAAACATAA+TGG + chr8_2:70698893-70698912 None:intergenic 25.0%
!! CATTATGTTTTCTTATCTTC+AGG - chr8_2:70698891-70698910 Msa1265990:intron 25.0%
! ACTTGTATATAAGCATTTAC+AGG + chr8_2:70699019-70699038 None:intergenic 25.0%
!! TATGTTTAAGATTTGAGACT+TGG - chr8_2:70699350-70699369 Msa1265990:intron 25.0%
!!! TGGTTGTTTTATGTTTGTTT+AGG - chr8_2:70699370-70699389 Msa1265990:intron 25.0%
! TAAAACATAAAATTGCAACC+AGG + chr8_2:70699410-70699429 None:intergenic 25.0%
!!! TGAGTAGAATTCTTTGATTT+TGG - chr8_2:70699657-70699676 Msa1265990:intron 25.0%
!! ATTGCTCTAGATTTGAAAAA+AGG - chr8_2:70699956-70699975 Msa1265990:intron 25.0%
!! TTGCTCTAGATTTGAAAAAA+GGG - chr8_2:70699957-70699976 Msa1265990:intron 25.0%
!! GATTTTGAATGAAATGCTAT+AGG - chr8_2:70700199-70700218 Msa1265990:intron 25.0%
!! ATTATAACATATAAGTTGGG+TGG - chr8_2:70700244-70700263 Msa1265990:CDS 25.0%
! AAAAAATTGACACCGTAAAA+TGG + chr8_2:70700278-70700297 None:intergenic 25.0%
! GAGAAAAAACAGCTATATTA+AGG + chr8_2:70700357-70700376 None:intergenic 25.0%
!!! ATAGCTGTTTTTTCTCTTTT+AGG - chr8_2:70700361-70700380 Msa1265990:CDS 25.0%
!!! TAGCTGTTTTTTCTCTTTTA+GGG - chr8_2:70700362-70700381 Msa1265990:CDS 25.0%
!! AAAGATTGCATTTTGGATTT+AGG - chr8_2:70700577-70700596 Msa1265990:intron 25.0%
!!! AACAGGAAATTATTTTGACA+AGG + chr8_2:70700671-70700690 None:intergenic 25.0%
! TTGTCAAAATAATTTCCTGT+TGG - chr8_2:70700670-70700689 Msa1265990:intron 25.0%
!! AAAATAATTTCCTGTTGGTT+GGG - chr8_2:70700675-70700694 Msa1265990:intron 25.0%
! TGTTTCATCTAATATGTACT+TGG - chr8_2:70700743-70700762 Msa1265990:intron 25.0%
!! TCTAATATGTACTTGGTAAT+TGG - chr8_2:70700750-70700769 Msa1265990:intron 25.0%
! TTGAAATAGAAGGAAAATCT+AGG - chr8_2:70700802-70700821 Msa1265990:intron 25.0%
! TATAACTCTGTATTTCATGT+CGG - chr8_2:70700951-70700970 Msa1265990:intron 25.0%
! AGGTTATATGGAAAGAATTA+AGG - chr8_2:70701286-70701305 Msa1265990:intron 25.0%
! TTATATGGAAAGAATTAAGG+AGG - chr8_2:70701289-70701308 Msa1265990:intron 25.0%
! CTTTAACAATAAGTTAGAAG+AGG + chr8_2:70701447-70701466 None:intergenic 25.0%
! TATATGATTATTACTCTTGC+AGG - chr8_2:70701664-70701683 Msa1265990:intron 25.0%
! CTTCATGCATATTTGTATTT+AGG + chr8_2:70701993-70702012 None:intergenic 25.0%
! GTATACTTTCTCAACAAAAA+AGG + chr8_2:70702100-70702119 None:intergenic 25.0%
! GTTCTATGAAAAGTAAAAGA+AGG - chr8_2:70702280-70702299 Msa1265990:intron 25.0%
! ATTGAAAAGCTTCAGAAATT+TGG - chr8_2:70702451-70702470 Msa1265990:intron 25.0%
! TTGAAAAGCTTCAGAAATTT+GGG - chr8_2:70702452-70702471 Msa1265990:intron 25.0%
!! TTAGGCATTTTATACATGAA+GGG + chr8_2:70702548-70702567 None:intergenic 25.0%
!! ATTAGGCATTTTATACATGA+AGG + chr8_2:70702549-70702568 None:intergenic 25.0%
! CAAATCATGTAATATATGAC+AGG - chr8_2:70702696-70702715 Msa1265990:intron 25.0%
!!! TTAGTGAATCTTGCTTTTAT+AGG - chr8_2:70702970-70702989 Msa1265990:CDS 25.0%
!! TTTTATAGGCAAGAAATCAA+CGG - chr8_2:70702984-70703003 Msa1265990:CDS 25.0%
! TCAATAATGCCAAAATAACA+CGG + chr8_2:70703053-70703072 None:intergenic 25.0%
! CTGTATTAGTTACAAGTTTA+AGG + chr8_2:70703319-70703338 None:intergenic 25.0%
! TAAACTTGTAACTAATACAG+TGG - chr8_2:70703319-70703338 Msa1265990:five_prime_UTR 25.0%
! AAACTTGTAACTAATACAGT+GGG - chr8_2:70703320-70703339 Msa1265990:five_prime_UTR 25.0%
GAACATTAGAAAAATGAACC+TGG + chr8_2:70698515-70698534 None:intergenic 30.0%
ACAAATTATACATCATCACC+TGG + chr8_2:70698612-70698631 None:intergenic 30.0%
! CTGTTAATAACTACCTTTTC+AGG - chr8_2:70698692-70698711 Msa1265990:CDS 30.0%
! CTTTTGTTCAAAACCTGAAA+AGG + chr8_2:70698708-70698727 None:intergenic 30.0%
TAAGCATGGTGAAAAATTAG+TGG - chr8_2:70698745-70698764 Msa1265990:CDS 30.0%
AAGCATGGTGAAAAATTAGT+GGG - chr8_2:70698746-70698765 Msa1265990:CDS 30.0%
GAAATTGGGTACAAATACAA+AGG + chr8_2:70698868-70698887 None:intergenic 30.0%
!! ATTTTACTCACGATTTGGAT+CGG + chr8_2:70699182-70699201 None:intergenic 30.0%
ATATAACATTGGTATCCCAA+TGG + chr8_2:70699596-70699615 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG + chr8_2:70699585-70699604 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG - chr8_2:70699489-70699508 Msa1265990:intron 30.0%
ATATGAAGGTCTAAAGAAGA+AGG + chr8_2:70699550-70699569 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG + chr8_2:70699489-70699508 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG - chr8_2:70699585-70699604 Msa1265990:CDS 30.0%
TTCTACTCAATTAAGTCTGT+AGG + chr8_2:70699646-70699665 None:intergenic 30.0%
AAGCACTTGTGAAATTGTTT+GGG + chr8_2:70699774-70699793 None:intergenic 30.0%
TAAGCACTTGTGAAATTGTT+TGG + chr8_2:70699775-70699794 None:intergenic 30.0%
! ACTTATTTGAGTTCGTATAC+TGG + chr8_2:70699800-70699819 None:intergenic 30.0%
TAAAATCGCCATTAAGTTTG+TGG - chr8_2:70699862-70699881 Msa1265990:intron 30.0%
! TGCTCTAGATTTGAAAAAAG+GGG - chr8_2:70699958-70699977 Msa1265990:intron 30.0%
! TTGATTATTTTCACAAGGGT+AGG - chr8_2:70699981-70700000 Msa1265990:intron 30.0%
! CAATACATCACCAAATTTTG+TGG + chr8_2:70700014-70700033 None:intergenic 30.0%
! ACTCTCGTGTTTAGTTTAAT+AGG - chr8_2:70700071-70700090 Msa1265990:intron 30.0%
AGGTACATTGGTGAAAATAT+TGG + chr8_2:70700162-70700181 None:intergenic 30.0%
GTTAATACATGTAGGTACAT+TGG + chr8_2:70700174-70700193 None:intergenic 30.0%
ATCAAGTGGTTAATACATGT+AGG + chr8_2:70700182-70700201 None:intergenic 30.0%
GCATTTCATTCAAAATCAAG+TGG + chr8_2:70700196-70700215 None:intergenic 30.0%
TGTACTAGATTTCTGTTATC+TGG - chr8_2:70700298-70700317 Msa1265990:CDS 30.0%
! TTCTAGGAAATGTTGAGTTA+CGG + chr8_2:70700445-70700464 None:intergenic 30.0%
CAAAATAATTTCCTGTTGGT+TGG - chr8_2:70700674-70700693 Msa1265990:intron 30.0%
TTAAATGATGCAGTACTAAG+AGG - chr8_2:70700716-70700735 Msa1265990:intron 30.0%
TAAATGATGCAGTACTAAGA+GGG - chr8_2:70700717-70700736 Msa1265990:intron 30.0%
! TTTCCATATAACCTTTTCCA+AGG + chr8_2:70701280-70701299 None:intergenic 30.0%
CTTATGTGTGACTAAAAGAT+AGG + chr8_2:70701346-70701365 None:intergenic 30.0%
AACAATAAGTTAGAAGAGGA+GGG + chr8_2:70701443-70701462 None:intergenic 30.0%
TAACAATAAGTTAGAAGAGG+AGG + chr8_2:70701444-70701463 None:intergenic 30.0%
GAACTATAGCTTATAGGATA+GGG + chr8_2:70701536-70701555 None:intergenic 30.0%
AGAACTATAGCTTATAGGAT+AGG + chr8_2:70701537-70701556 None:intergenic 30.0%
CAGTAAGAACTATAGCTTAT+AGG + chr8_2:70701542-70701561 None:intergenic 30.0%
!!! TAAACACTCCTACTCTTTTT+TGG - chr8_2:70701777-70701796 Msa1265990:intron 30.0%
!! CTTTAGAACCAAAAAAGAGT+AGG + chr8_2:70701788-70701807 None:intergenic 30.0%
AGTATAGTTCAGATGGTAAA+AGG + chr8_2:70701904-70701923 None:intergenic 30.0%
TGCATTCTTTATCAATCTGA+AGG + chr8_2:70702020-70702039 None:intergenic 30.0%
TTCAGATTGATAAAGAATGC+AGG - chr8_2:70702019-70702038 Msa1265990:intron 30.0%
TATACCTGCAGAATTTATGA+AGG - chr8_2:70702115-70702134 Msa1265990:intron 30.0%
TTTAAGAGTTCCATGATTGT+TGG - chr8_2:70702258-70702277 Msa1265990:intron 30.0%
TTTCATAGAACCAACAATCA+TGG + chr8_2:70702271-70702290 None:intergenic 30.0%
CTAATGTTCGACTTCTATTA+AGG - chr8_2:70702322-70702341 Msa1265990:intron 30.0%
!!! ATTAAGGAGGTTTTAGATGT+TGG - chr8_2:70702338-70702357 Msa1265990:intron 30.0%
!!! TTAAGGAGGTTTTAGATGTT+GGG - chr8_2:70702339-70702358 Msa1265990:intron 30.0%
! CTTTTCAATAACCAGACAAA+TGG + chr8_2:70702440-70702459 None:intergenic 30.0%
TGAAAAGCTTCAGAAATTTG+GGG - chr8_2:70702453-70702472 Msa1265990:intron 30.0%
AAATTGAATAAGGTTGGGTT+TGG - chr8_2:70702493-70702512 Msa1265990:intron 30.0%
! TAGGCATTTTATACATGAAG+GGG + chr8_2:70702547-70702566 None:intergenic 30.0%
!!! TATGATGTACCGTGTTATTT+TGG - chr8_2:70703041-70703060 Msa1265990:CDS 30.0%
! CATTATTGATTATGAGCTGA+TGG - chr8_2:70703064-70703083 Msa1265990:CDS 30.0%
!! TTTTAGAAAGCTCAAAGAGT+GGG + chr8_2:70703139-70703158 None:intergenic 30.0%
!! TTTTTAGAAAGCTCAAAGAG+TGG + chr8_2:70703140-70703159 None:intergenic 30.0%
!! AGCTTTGTTGAGTAATAGAT+GGG + chr8_2:70703242-70703261 None:intergenic 30.0%
!! AAGCTTTGTTGAGTAATAGA+TGG + chr8_2:70703243-70703262 None:intergenic 30.0%
TGAATGACTGATCAATTGGT+TGG - chr8_2:70698253-70698272 Msa1265990:three_prime_UTR 35.0%
! TGTGCTCTCTATAATTTGCA+AGG - chr8_2:70698358-70698377 Msa1265990:three_prime_UTR 35.0%
! GTGCTCTCTATAATTTGCAA+GGG - chr8_2:70698359-70698378 Msa1265990:three_prime_UTR 35.0%
TGCAAGGGTAAGTGAATAAT+TGG - chr8_2:70698374-70698393 Msa1265990:three_prime_UTR 35.0%
GTCATAATACCCAATAAGCA+TGG - chr8_2:70698731-70698750 Msa1265990:CDS 35.0%
!! ATTGCAAGATTCTGGAACTA+AGG - chr8_2:70698772-70698791 Msa1265990:CDS 35.0%
!! TCTTTTCGCTTTGACTTTTC+TGG - chr8_2:70698967-70698986 Msa1265990:intron 35.0%
!! GCTTTGACTTTTCTGGAAAT+GGG - chr8_2:70698974-70698993 Msa1265990:intron 35.0%
! AGTGTTTTCGTAAGCTATCA+TGG - chr8_2:70699101-70699120 Msa1265990:intron 35.0%
TATGTTGAAGCTTTCTGACT+AGG - chr8_2:70699276-70699295 Msa1265990:intron 35.0%
AAAATTGCAACCAGGATTGA+AGG + chr8_2:70699402-70699421 None:intergenic 35.0%
CTTCTTTAGACCTTCATATG+TGG - chr8_2:70699551-70699570 Msa1265990:CDS 35.0%
TTAAGTCTGTAGGATCGAAA+GGG + chr8_2:70699636-70699655 None:intergenic 35.0%
ATTAAGTCTGTAGGATCGAA+AGG + chr8_2:70699637-70699656 None:intergenic 35.0%
ATCTTGCATCAGATCAAAAC+TGG + chr8_2:70699713-70699732 None:intergenic 35.0%
GGAAATAGCTTAAGGTTGTT+TGG + chr8_2:70699742-70699761 None:intergenic 35.0%
GAGCTTATGGAAATAGCTTA+AGG + chr8_2:70699750-70699769 None:intergenic 35.0%
AAATTGTTTGGGAGAGCTTA+TGG + chr8_2:70699763-70699782 None:intergenic 35.0%
CCATTAAGTTTGTGGATACA+GGG - chr8_2:70699870-70699889 Msa1265990:intron 35.0%
!! AGGGGTTGATTATTTTCACA+AGG - chr8_2:70699976-70699995 Msa1265990:intron 35.0%
!! GGGGTTGATTATTTTCACAA+GGG - chr8_2:70699977-70699996 Msa1265990:intron 35.0%
TAATAGGAAACAACCGAATG+AGG - chr8_2:70700087-70700106 Msa1265990:intron 35.0%
! GTGGTAGTTTCTCCATTTTA+CGG - chr8_2:70700263-70700282 Msa1265990:CDS 35.0%
!! TTCTCTTTTAGGGAAAGTGA+TGG - chr8_2:70700372-70700391 Msa1265990:CDS 35.0%
TTTCCTAGAATCAAACCGTT+TGG - chr8_2:70700455-70700474 Msa1265990:intron 35.0%
! CTGTCTAAAACTTGTCTTGT+TGG + chr8_2:70700551-70700570 None:intergenic 35.0%
!! GGTTATATTTTTGAGCTGCT+TGG - chr8_2:70700823-70700842 Msa1265990:intron 35.0%
TCTGTATTTCATGTCGGAAT+AGG - chr8_2:70700957-70700976 Msa1265990:intron 35.0%
GTGTATCTGTATCTTGATGT+AGG - chr8_2:70701155-70701174 Msa1265990:CDS 35.0%
TATCTGTATCTTGATGTAGG+TGG - chr8_2:70701158-70701177 Msa1265990:CDS 35.0%
ATGGAAAGAATTAAGGAGGA+TGG - chr8_2:70701293-70701312 Msa1265990:intron 35.0%
TGACTAAAAGATAGGTTACC+TGG + chr8_2:70701338-70701357 None:intergenic 35.0%
TGTGAAAGAAAAACAAGCCA+TGG + chr8_2:70701486-70701505 None:intergenic 35.0%
!!! TGGCTTGTTTTTCTTTCACA+TGG - chr8_2:70701486-70701505 Msa1265990:intron 35.0%
!! AGTAGGAGTGTTTATGTTGA+CGG + chr8_2:70701771-70701790 None:intergenic 35.0%
!! TTTGGTTCTAAAGAGTCTAG+AGG - chr8_2:70701795-70701814 Msa1265990:intron 35.0%
TCTCGTAAGTATAGTTCAGA+TGG + chr8_2:70701911-70701930 None:intergenic 35.0%
AAGACCTTCATAAATTCTGC+AGG + chr8_2:70702122-70702141 None:intergenic 35.0%
ATGTTCGACTTCTATTAAGG+AGG - chr8_2:70702325-70702344 Msa1265990:intron 35.0%
! TGATTTTCCTTCCATTTGTC+TGG - chr8_2:70702426-70702445 Msa1265990:intron 35.0%
TCAATAACCAGACAAATGGA+AGG + chr8_2:70702436-70702455 None:intergenic 35.0%
TGATATCATCCACTTGACTA+GGG + chr8_2:70702626-70702645 None:intergenic 35.0%
TGCATCTCCAACAGATATAA+CGG + chr8_2:70702750-70702769 None:intergenic 35.0%
!! TGAGTGGTTTGGTAAAATCT+GGG + chr8_2:70702783-70702802 None:intergenic 35.0%
ATGATATGTAGTGAGTGGTT+TGG + chr8_2:70702794-70702813 None:intergenic 35.0%
CTTCTATGATATGTAGTGAG+TGG + chr8_2:70702799-70702818 None:intergenic 35.0%
CACTCACTACATATCATAGA+AGG - chr8_2:70702797-70702816 Msa1265990:CDS 35.0%
! TCATCTTGGTGATTAGTGTA+GGG + chr8_2:70702833-70702852 None:intergenic 35.0%
AAGAAACCATACACCAAGAT+AGG - chr8_2:70702882-70702901 Msa1265990:intron 35.0%
AGAAACCATACACCAAGATA+GGG - chr8_2:70702883-70702902 Msa1265990:intron 35.0%
TTACCTAAGTATCCCTATCT+TGG + chr8_2:70702898-70702917 None:intergenic 35.0%
AACGGCAGAACAATATTGTT+CGG - chr8_2:70703002-70703021 Msa1265990:CDS 35.0%
TAACACGGTACATCATATCA+GGG + chr8_2:70703038-70703057 None:intergenic 35.0%
ATAACACGGTACATCATATC+AGG + chr8_2:70703039-70703058 None:intergenic 35.0%
! TGTCTTCTTTTTCTCCATAC+TGG + chr8_2:70703099-70703118 None:intergenic 35.0%
ATGGAGAAAAAGAAGACATG+CGG - chr8_2:70703101-70703120 Msa1265990:CDS 35.0%
!! ACTGATCAATTGGTTGGTCT+TGG - chr8_2:70698259-70698278 Msa1265990:three_prime_UTR 40.0%
!! CTGGTTACTGGTTTGTGATT+GGG + chr8_2:70698537-70698556 None:intergenic 40.0%
!! TCTGGTTACTGGTTTGTGAT+TGG + chr8_2:70698538-70698557 None:intergenic 40.0%
! CTGATTCTTCTTCTGGTTAC+TGG + chr8_2:70698549-70698568 None:intergenic 40.0%
GAGAGACATGTTGAAGTTGA+GGG + chr8_2:70698577-70698596 None:intergenic 40.0%
AGAGAGACATGTTGAAGTTG+AGG + chr8_2:70698578-70698597 None:intergenic 40.0%
TCTCTCTCTTCAGAAAAACC+AGG - chr8_2:70698591-70698610 Msa1265990:intron 40.0%
GTGGGTATATTGCAAGATTC+TGG - chr8_2:70698764-70698783 Msa1265990:CDS 40.0%
GAGATTGTAATCTTGTGCCA+TGG - chr8_2:70698794-70698813 Msa1265990:CDS 40.0%
TCTTCAGGAATCAAAAACCC+TGG - chr8_2:70698906-70698925 Msa1265990:intron 40.0%
!! CGCTTTGACTTTTCTGGAAA+TGG - chr8_2:70698973-70698992 Msa1265990:intron 40.0%
! CAGGGATTTTACTCACGATT+TGG + chr8_2:70699187-70699206 None:intergenic 40.0%
! CATTTTCATGCGATTTCGCA+GGG + chr8_2:70699205-70699224 None:intergenic 40.0%
! ACATTTTCATGCGATTTCGC+AGG + chr8_2:70699206-70699225 None:intergenic 40.0%
ACATAAACCACTCAAAGCCA+GGG + chr8_2:70699261-70699280 None:intergenic 40.0%
AACATAAACCACTCAAAGCC+AGG + chr8_2:70699262-70699281 None:intergenic 40.0%
! TATGCATGTGAAGTGCTATG+CGG + chr8_2:70699519-70699538 None:intergenic 40.0%
GTATCCCAATGATACACAAG+TGG - chr8_2:70699607-70699626 Msa1265990:CDS 40.0%
GACACCACTTGTGTATCATT+GGG + chr8_2:70699614-70699633 None:intergenic 40.0%
GCCATTAAGTTTGTGGATAC+AGG - chr8_2:70699869-70699888 Msa1265990:intron 40.0%
CCCTGTATCCACAAACTTAA+TGG + chr8_2:70699873-70699892 None:intergenic 40.0%
TCTCATTCATGCTCTCCATT+GGG - chr8_2:70699904-70699923 Msa1265990:intron 40.0%
GTTGCAATTCATGAACCCAA+TGG + chr8_2:70699922-70699941 None:intergenic 40.0%
TTGGAGCTAGCTATAGATGT+GGG + chr8_2:70700143-70700162 None:intergenic 40.0%
ATTGGAGCTAGCTATAGATG+TGG + chr8_2:70700144-70700163 None:intergenic 40.0%
AGTGATGGTTCGTTTCAGTA+TGG - chr8_2:70700387-70700406 Msa1265990:intron 40.0%
TGGGCACAGTAAAGGTAAAT+TGG - chr8_2:70700491-70700510 Msa1265990:intron 40.0%
! CTAAAACTTGTCTTGTTGGC+AGG + chr8_2:70700547-70700566 None:intergenic 40.0%
TTGGCAAAAACCTGCTACAA+AGG - chr8_2:70700842-70700861 Msa1265990:intron 40.0%
AAACCTGCTACAAAGGAACT+CGG - chr8_2:70700849-70700868 Msa1265990:intron 40.0%
! CCACATAATGCAAGAGCATA+GGG + chr8_2:70700999-70701018 None:intergenic 40.0%
! TCCACATAATGCAAGAGCAT+AGG + chr8_2:70701000-70701019 None:intergenic 40.0%
TCTTGCATTATGTGGATGAC+TGG - chr8_2:70701004-70701023 Msa1265990:intron 40.0%
ATGGTTTCATTGACGTGAAG+AGG - chr8_2:70701312-70701331 Msa1265990:intron 40.0%
AGTTTCAATTCGTCTTTGCG+TGG - chr8_2:70701364-70701383 Msa1265990:intron 40.0%
GTTTCAATTCGTCTTTGCGT+GGG - chr8_2:70701365-70701384 Msa1265990:intron 40.0%
TTTCAATTCGTCTTTGCGTG+GGG - chr8_2:70701366-70701385 Msa1265990:intron 40.0%
AAATGATCTGGCACTTGACA+TGG - chr8_2:70701595-70701614 Msa1265990:intron 40.0%
ATGTCATGTCATGACTCATG+TGG + chr8_2:70701735-70701754 None:intergenic 40.0%
!! ACACACTAAGTGTTGAGAAG+TGG - chr8_2:70701828-70701847 Msa1265990:intron 40.0%
!! CACACTAAGTGTTGAGAAGT+GGG - chr8_2:70701829-70701848 Msa1265990:intron 40.0%
!! ACACTAAGTGTTGAGAAGTG+GGG - chr8_2:70701830-70701849 Msa1265990:intron 40.0%
!!! AGGTTTTAGATGTTGGGAGA+AGG - chr8_2:70702345-70702364 Msa1265990:intron 40.0%
AAGGAATGAGGAGAAACGAA+AGG - chr8_2:70702364-70702383 Msa1265990:intron 40.0%
AGGAATGAGGAGAAACGAAA+GGG - chr8_2:70702365-70702384 Msa1265990:intron 40.0%
GAGAGAAGGGAAGAAAATGA+GGG - chr8_2:70702394-70702413 Msa1265990:intron 40.0%
AGAGAAGGGAAGAAAATGAG+GGG - chr8_2:70702395-70702414 Msa1265990:intron 40.0%
GTGATATCATCCACTTGACT+AGG + chr8_2:70702627-70702646 None:intergenic 40.0%
TCAGACACCGTTATATCTGT+TGG - chr8_2:70702740-70702759 Msa1265990:intron 40.0%
!! GTGAGTGGTTTGGTAAAATC+TGG + chr8_2:70702784-70702803 None:intergenic 40.0%
! CTCATCTTGGTGATTAGTGT+AGG + chr8_2:70702834-70702853 None:intergenic 40.0%
! AGTATCCCTATCTTGGTGTA+TGG + chr8_2:70702891-70702910 None:intergenic 40.0%
ACACCAAGATAGGGATACTT+AGG - chr8_2:70702892-70702911 Msa1265990:intron 40.0%
AACACGGTACATCATATCAG+GGG + chr8_2:70703037-70703056 None:intergenic 40.0%
! CTTCTTTTTCTCCATACTGG+TGG + chr8_2:70703096-70703115 None:intergenic 40.0%
TGGAGAAAAAGAAGACATGC+GGG - chr8_2:70703102-70703121 Msa1265990:CDS 40.0%
GAGAGCTGCTATATATCACG+AGG + chr8_2:70698306-70698325 None:intergenic 45.0%
GGTGCTTCTGATTCTTCTTC+TGG + chr8_2:70698556-70698575 None:intergenic 45.0%
!! CTTTTGAGGAGCGAAAACCA+TGG + chr8_2:70698814-70698833 None:intergenic 45.0%
! CTTTTTCCAATGCAGCAGCA+AGG + chr8_2:70698936-70698955 None:intergenic 45.0%
! ACTCACGATTTGGATCGGTA+GGG + chr8_2:70699177-70699196 None:intergenic 45.0%
! TACTCACGATTTGGATCGGT+AGG + chr8_2:70699178-70699197 None:intergenic 45.0%
TAGGTACGATCCTTCAATCC+TGG - chr8_2:70699389-70699408 Msa1265990:intron 45.0%
AATGGTACACAAGTGGTGTC+CGG + chr8_2:70699456-70699475 None:intergenic 45.0%
GACACCACTTGTGTACCATT+GGG - chr8_2:70699456-70699475 Msa1265990:intron 45.0%
GTATCCCAATGGTACACAAG+TGG + chr8_2:70699463-70699482 None:intergenic 45.0%
! TGAAGGTGTGCCACATATGA+AGG + chr8_2:70699564-70699583 None:intergenic 45.0%
CATATGTGGCACACCTTCAT+TGG - chr8_2:70699565-70699584 Msa1265990:CDS 45.0%
GGACACCACTTGTGTATCAT+TGG + chr8_2:70699615-70699634 None:intergenic 45.0%
GTCTCATTCATGCTCTCCAT+TGG - chr8_2:70699903-70699922 Msa1265990:intron 45.0%
AGGAGCGATGCCACAAAATT+TGG - chr8_2:70700001-70700020 Msa1265990:intron 45.0%
AGAGCATGAGCTACCTCATT+CGG + chr8_2:70700103-70700122 None:intergenic 45.0%
TCATGCTCTTGCAAGTTGCA+AGG - chr8_2:70700114-70700133 Msa1265990:intron 45.0%
CATGCTCTTGCAAGTTGCAA+GGG - chr8_2:70700115-70700134 Msa1265990:intron 45.0%
CGTTTCAGTATGGCAACTAC+TGG - chr8_2:70700397-70700416 Msa1265990:intron 45.0%
TCGCCAAACGGTTTGATTCT+AGG + chr8_2:70700461-70700480 None:intergenic 45.0%
CAACAATTGCAGTCGCCAAA+CGG + chr8_2:70700473-70700492 None:intergenic 45.0%
GTTTGGCGACTGCAATTGTT+GGG - chr8_2:70700472-70700491 Msa1265990:intron 45.0%
GCAATTGTTGGGCACAGTAA+AGG - chr8_2:70700483-70700502 Msa1265990:intron 45.0%
ATCTTTACAGCCCAACCAAC+AGG + chr8_2:70700688-70700707 None:intergenic 45.0%
CCCTATGCTCTTGCATTATG+TGG - chr8_2:70700996-70701015 Msa1265990:intron 45.0%
GCATTATGTGGATGACTGGA+TGG - chr8_2:70701008-70701027 Msa1265990:intron 45.0%
CTGTATCTTGATGTAGGTGG+TGG - chr8_2:70701161-70701180 Msa1265990:CDS 45.0%
AAAGCAGTCGTCAATCTCTC+TGG - chr8_2:70701221-70701240 Msa1265990:intron 45.0%
!! ATTGAAGAGCGCCTTGGAAA+AGG - chr8_2:70701266-70701285 Msa1265990:intron 45.0%
GCGCCTTGGAAAAGGTTATA+TGG - chr8_2:70701274-70701293 Msa1265990:intron 45.0%
TTCAATTCGTCTTTGCGTGG+GGG - chr8_2:70701367-70701386 Msa1265990:intron 45.0%
ATGTGGCAGATCATCTATGG+TGG + chr8_2:70701718-70701737 None:intergenic 45.0%
CTCATGTGGCAGATCATCTA+TGG + chr8_2:70701721-70701740 None:intergenic 45.0%
!! CACTAAGTGTTGAGAAGTGG+GGG - chr8_2:70701831-70701850 Msa1265990:intron 45.0%
CATTTGATATGCTGTGGTGC+GGG + chr8_2:70701872-70701891 None:intergenic 45.0%
GCATTTGATATGCTGTGGTG+CGG + chr8_2:70701873-70701892 None:intergenic 45.0%
!! CAGGAGCATTTGATATGCTG+TGG + chr8_2:70701878-70701897 None:intergenic 45.0%
TTCAGATGGTAAAAGGCTGC+AGG + chr8_2:70701897-70701916 None:intergenic 45.0%
GCAAACTTTCCAGAGTCACA+CGG + chr8_2:70701963-70701982 None:intergenic 45.0%
! TGTGACTCTGGAAAGTTTGC+TGG - chr8_2:70701963-70701982 Msa1265990:intron 45.0%
AGATGTTGGGAGAAGGAATG+AGG - chr8_2:70702352-70702371 Msa1265990:intron 45.0%
GGAATGAGGAGAAACGAAAG+GGG - chr8_2:70702366-70702385 Msa1265990:intron 45.0%
AGGAGAAACGAAAGGGGAAT+GGG - chr8_2:70702372-70702391 Msa1265990:intron 45.0%
GGAGAGAAGGGAAGAAAATG+AGG - chr8_2:70702393-70702412 Msa1265990:intron 45.0%
TGGTTTACTCCCTAGTCAAG+TGG - chr8_2:70702614-70702633 Msa1265990:CDS 45.0%
CTAACGAAGCTAGCTCATCT+TGG + chr8_2:70702847-70702866 None:intergenic 45.0%
AAGCTCAAAGAGTGGGAACT+AGG + chr8_2:70703132-70703151 None:intergenic 45.0%
GGTCTTGGTGAGATATTCGC+TGG - chr8_2:70698274-70698293 Msa1265990:three_prime_UTR 50.0%
GCTGCTGCATTGGAAAAAGC+TGG - chr8_2:70698937-70698956 Msa1265990:intron 50.0%
! CTCACGATTTGGATCGGTAG+GGG + chr8_2:70699176-70699195 None:intergenic 50.0%
TCGTGCGATTCTAACAACCC+TGG - chr8_2:70699241-70699260 Msa1265990:intron 50.0%
!! CTAACAACCCTGGCTTTGAG+TGG - chr8_2:70699251-70699270 Msa1265990:intron 50.0%
! CTTGCTATCCCCTTTCGATC+CGG - chr8_2:70699434-70699453 Msa1265990:intron 50.0%
AAGTGGTGTCCGGATCGAAA+GGG + chr8_2:70699446-70699465 None:intergenic 50.0%
GGACACCACTTGTGTACCAT+TGG - chr8_2:70699455-70699474 Msa1265990:intron 50.0%
GTATGGCAACTACTGGAGAG+AGG - chr8_2:70700404-70700423 Msa1265990:intron 50.0%
CGTTTGGCGACTGCAATTGT+TGG - chr8_2:70700471-70700490 Msa1265990:intron 50.0%
TGACCGAGTTCCTTTGTAGC+AGG + chr8_2:70700855-70700874 None:intergenic 50.0%
! TCTTGATGTAGGTGGTGGTG+TGG - chr8_2:70701166-70701185 Msa1265990:CDS 50.0%
CTCTGGACGCTATGATCTGA+AGG - chr8_2:70701238-70701257 Msa1265990:intron 50.0%
GGACGCTATGATCTGAAGGA+TGG - chr8_2:70701242-70701261 Msa1265990:intron 50.0%
!! GATGGAATTGAAGAGCGCCT+TGG - chr8_2:70701260-70701279 Msa1265990:intron 50.0%
TTCATTGACGTGAAGAGGCC+AGG - chr8_2:70701317-70701336 Msa1265990:intron 50.0%
! GCGTGGGGGCATGTTATATT+AGG - chr8_2:70701381-70701400 Msa1265990:intron 50.0%
! GTGTATTTGCTGCGAGACCA+TGG - chr8_2:70701466-70701485 Msa1265990:intron 50.0%
! TTCTGAGTACCGTGTGACTC+TGG - chr8_2:70701690-70701709 Msa1265990:intron 50.0%
ATGGTGGTTCCAGAGTCACA+CGG + chr8_2:70701702-70701721 None:intergenic 50.0%
GTTGAGAAGTGGGGGAATTG+CGG - chr8_2:70701839-70701858 Msa1265990:intron 50.0%
TTGAGAAGTGGGGGAATTGC+GGG - chr8_2:70701840-70701859 Msa1265990:intron 50.0%
ACGAGACTAAGCACACTTGC+AGG - chr8_2:70701925-70701944 Msa1265990:intron 50.0%
TTCCAGAGTCACACGGTAGT+CGG + chr8_2:70701956-70701975 None:intergenic 50.0%
GAGGAGAAACGAAAGGGGAA+TGG - chr8_2:70702371-70702390 Msa1265990:intron 50.0%
GAAAGGGGAATGGGAGAGAA+GGG - chr8_2:70702381-70702400 Msa1265990:intron 50.0%
TGCAGCAGCAAGGTTCACCA+GGG + chr8_2:70698926-70698945 None:intergenic 55.0%
ATGCAGCAGCAAGGTTCACC+AGG + chr8_2:70698927-70698946 None:intergenic 55.0%
GGTGAACCTTGCTGCTGCAT+TGG - chr8_2:70698927-70698946 Msa1265990:intron 55.0%
AGTGGTGTCCGGATCGAAAG+GGG + chr8_2:70699445-70699464 None:intergenic 55.0%
CAAGTGGTGTCCGGATCGAA+AGG + chr8_2:70699447-70699466 None:intergenic 55.0%
GCTATGCGGCACACCTTCAT+TGG + chr8_2:70699505-70699524 None:intergenic 55.0%
CAACTACTGGAGAGAGGCTG+AGG - chr8_2:70700410-70700429 Msa1265990:intron 55.0%
TGATATGCTGTGGTGCGGGT+TGG + chr8_2:70701868-70701887 None:intergenic 55.0%
TTCCGACTACCGTGTGACTC+TGG - chr8_2:70701951-70701970 Msa1265990:intron 55.0%
CGAAAGGGGAATGGGAGAGA+AGG - chr8_2:70702380-70702399 Msa1265990:intron 55.0%
GATGGTGCACACCACCAGTA+TGG - chr8_2:70703082-70703101 Msa1265990:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 70698222 70703352 70698222 ID=Msa1265990;Name=Msa1265990
chr8_2 mRNA 70698222 70703352 70698222 ID=Msa1265990-mRNA-1;Parent=Msa1265990;Name=Msa1265990-mRNA-1;_AED=0.17;_eAED=0.17;_QI=198|1|1|1|0.75|0.77|9|339|322
chr8_2 exon 70698222 70698393 70698222 ID=Msa1265990-mRNA-1:exon:23537;Parent=Msa1265990-mRNA-1
chr8_2 exon 70698416 70698582 70698416 ID=Msa1265990-mRNA-1:exon:23536;Parent=Msa1265990-mRNA-1
chr8_2 exon 70698661 70698856 70698661 ID=Msa1265990-mRNA-1:exon:23535;Parent=Msa1265990-mRNA-1
chr8_2 exon 70699534 70699627 70699534 ID=Msa1265990-mRNA-1:exon:23534;Parent=Msa1265990-mRNA-1
chr8_2 exon 70700236 70700397 70700236 ID=Msa1265990-mRNA-1:exon:23533;Parent=Msa1265990-mRNA-1
chr8_2 exon 70701070 70701191 70701070 ID=Msa1265990-mRNA-1:exon:23532;Parent=Msa1265990-mRNA-1
chr8_2 exon 70702579 70702661 70702579 ID=Msa1265990-mRNA-1:exon:23531;Parent=Msa1265990-mRNA-1
chr8_2 exon 70702742 70702860 70702742 ID=Msa1265990-mRNA-1:exon:23530;Parent=Msa1265990-mRNA-1
chr8_2 exon 70702962 70703352 70702962 ID=Msa1265990-mRNA-1:exon:23529;Parent=Msa1265990-mRNA-1
chr8_2 five_prime_UTR 70703155 70703352 70703155 ID=Msa1265990-mRNA-1:five_prime_utr;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70702962 70703154 70702962 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70702742 70702860 70702742 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70702579 70702661 70702579 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70701070 70701191 70701070 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70700236 70700397 70700236 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70699534 70699627 70699534 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 CDS 70698661 70698856 70698661 ID=Msa1265990-mRNA-1:cds;Parent=Msa1265990-mRNA-1
chr8_2 three_prime_UTR 70698416 70698582 70698416 ID=Msa1265990-mRNA-1:three_prime_utr;Parent=Msa1265990-mRNA-1
chr8_2 three_prime_UTR 70698222 70698393 70698222 ID=Msa1265990-mRNA-1:three_prime_utr;Parent=Msa1265990-mRNA-1
Gene Sequence

>Msa1265990

ATGGGTATCTTTGTAGTACAAAATGCTCACTCGCTTCCACTATTATCAAATTCATCATCACTTTCTATAACTCCTTCATTATTTCAATATCACCAGGTTCATTTTTCTAATGTTCCCAATCACAAACCAGTAACCAGAAGAAGAATCAGAAGCACCCTCAACTTCAACATGTCTCTCTCTTCAGAAAAACCAGGTTTTGAACAAAAGAGAGTCATAATACCCAATAAGCATGGTGAAAAATTAGTGGGTATATTGCAAGATTCTGGAACTAAGGAGATTGTAATCTTGTGCCATGGTTTTCGCTCCTCAAAAGAATCAAAAACCCTGGTGAACCTTGCTGCTGCATTGGAAAAAGCTGGAATCAGTTCTTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGATGGTTCGTTTCAGTATGGCAACTACTGGAGAGAGGCTGAGGATTTACATGCCGTAACTCAACATTTCCTAGAATCAAACCGTTTGGCGACTGCAATTGTTGGGCACAGTAAAGGTGGTGGTGTGGTGCTTCTATATGCTTCAAAATATCATGACATCAAAGCAGTCGTCAATCTCTCTGGACGCTATGATCTGAAGGATGGAATTGAAGAGCGCCTTGGAAAAGGTTATATGGAAAGAATTAAGGAGGATGGTTTCATTGACGTGAAGAGGCCAGGAAGTTCCGACTACCGTGTGACTCTGGAAAGTTTGCTGGATCGCCTAAATACAAATATGCATGAAGCATGCCTTCAGATTGATAAAGAATGCAGGGTCCTTACAGTTCACGGTTCTTCAGACACCGTTATATCTGTTGGAGATGCATCTAAGTTTGCCCAGATTTTACCAAACCACTCACTACATATCATAGAAGGAGCTGATCATCCCTACACTAATCACCAAGATGAGCTAGCTTCGTTAGTTGTTAACTTCATAAAAGAAACCATACACCAAGATAGGGATACTTAG

Protein sequence

>Msa1265990

MGIFVVQNAHSLPLLSNSSSLSITPSLFQYHQVHFSNVPNHKPVTRRRIRSTLNFNMSLSSEKPGFEQKRVIIPNKHGEKLVGILQDSGTKEIVILCHGFRSSKESKTLVNLAAALEKAGISSFRFDFSGNGESDGSFQYGNYWREAEDLHAVTQHFLESNRLATAIVGHSKGGGVVLLYASKYHDIKAVVNLSGRYDLKDGIEERLGKGYMERIKEDGFIDVKRPGSSDYRVTLESLLDRLNTNMHEACLQIDKECRVLTVHGSSDTVISVGDASKFAQILPNHSLHIIEGADHPYTNHQDELASLVVNFIKETIHQDRDT*