AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299990 MtrunA17_Chr4g0061391 82.875 327 15 2 1 327 1 286 0.0 508
Msa1299990 MtrunA17_Chr1g0191241 52.961 304 100 3 24 327 37 297 3.60e-105 309
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299990 AT3G05010.1 52.459 305 102 3 23 327 39 300 4.63e-103 305
Msa1299990 AT5G27210.1 49.508 305 111 3 23 327 36 297 2.76e-95 285

Find 127 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATAAAGTTATTATAAA+TGG 0.197863 8_3:-61382300 Msa1299990:three_prime_UTR
ATAACATTGTTTGATTATAA+TGG 0.202804 8_3:+61387786 None:intergenic
TGTATTCCACTATTTAATTC+TGG 0.205520 8_3:+61382864 None:intergenic
AAGACGAAATAGTGCTTTAA+TGG 0.227414 8_3:+61387873 None:intergenic
GACAATACTTCCTGATAAAA+TGG 0.241038 8_3:+61386022 None:intergenic
AAGACCAGGCAAGGTTTAAA+AGG 0.246421 8_3:+61387495 None:intergenic
TATCTAAAGCATTGTAAATC+TGG 0.248540 8_3:+61382525 None:intergenic
CTTCCTATTATGCCCTTCTT+TGG 0.253286 8_3:-61387526 Msa1299990:CDS
CGATCGAATTCAGAAGAAAA+TGG 0.257863 8_3:+61387751 None:intergenic
GAGGCTATTGATATTCTTCT+TGG 0.272613 8_3:+61387574 None:intergenic
TAATTCTGGGTCCCACTATT+AGG 0.282641 8_3:+61382878 None:intergenic
TAACATTGTTTGATTATAAT+GGG 0.287115 8_3:+61387787 None:intergenic
AATCCAAAGAAGGGCATAAT+AGG 0.289361 8_3:+61387523 None:intergenic
ATCTCAATGAATGATAGTTT+TGG 0.293451 8_3:+61383190 None:intergenic
GCTTGTGGGCTGGCGGGAAT+TGG 0.314882 8_3:-61383826 Msa1299990:CDS
CAGGCTTGGCAGTGCTCTCC+TGG 0.333267 8_3:-61386179 Msa1299990:CDS
TTCCATGCAAACTCCTTTCC+AGG 0.341258 8_3:+61386161 None:intergenic
CTTGGTGGATACCCTTCTTA+AGG 0.341856 8_3:-61386000 Msa1299990:intron
ACATTTCATTAAGATGTTGA+TGG 0.351768 8_3:+61383320 None:intergenic
CAATTACTATGTTTGCTTGT+GGG 0.354603 8_3:-61383840 Msa1299990:CDS
GTATTCCACTATTTAATTCT+GGG 0.360798 8_3:+61382865 None:intergenic
CAAATATTGAAGGCTTATAA+TGG 0.362428 8_3:-61383039 Msa1299990:three_prime_UTR
GCAGGAGGAAGACTTTCTTT+TGG 0.369356 8_3:-61383519 Msa1299990:intron
TTAAGATGTTGATGGATCAT+TGG 0.375552 8_3:+61383328 None:intergenic
TGTAAATTGATGCCAACTTA+AGG 0.380408 8_3:+61383149 None:intergenic
TCAACATCGATTTGAGCTTC+AGG 0.386156 8_3:+61387680 None:intergenic
TGTCTTGAATATGATAATAA+TGG 0.388762 8_3:+61383077 None:intergenic
TTGTCATTGTTTACGACATC+AGG 0.398724 8_3:-61386134 Msa1299990:CDS
CAACATTGCAATTGAACAAT+GGG 0.403088 8_3:+61384174 None:intergenic
TACTATGTTTGCTTGTGGGC+TGG 0.406794 8_3:-61383836 Msa1299990:CDS
CCATTGTTCAATTGCAATGT+TGG 0.414336 8_3:-61384173 Msa1299990:CDS
GCGGGAATTGGTGCTGGCCT+CGG 0.416438 8_3:-61383814 Msa1299990:CDS
GGGCTGGCGGGAATTGGTGC+TGG 0.418049 8_3:-61383820 Msa1299990:CDS
ACATACAACTACTATGTTTG+AGG 0.421705 8_3:-61383116 Msa1299990:three_prime_UTR
AATGACTCCTAGTAGATTAG+TGG 0.421879 8_3:-61382902 Msa1299990:three_prime_UTR
TTCTGTGAGATGCACGGGCA+GGG 0.422402 8_3:+61382273 None:intergenic
TTGGTGCTGGCCTCGGCAAT+TGG 0.423614 8_3:-61383807 Msa1299990:intron
TTTGATCAAGAGACAAAAGT+TGG 0.424373 8_3:-61387919 None:intergenic
TACTTTCATTTGACTTGGTT+AGG 0.429593 8_3:+61383355 None:intergenic
AGAAAAGTTACATAAAGAAA+TGG 0.430705 8_3:+61383652 None:intergenic
GACGGAGGGAGTAGTTGATT+TGG 0.433501 8_3:-61382561 Msa1299990:intron
GATCGAATTCAGAAGAAAAT+GGG 0.439423 8_3:+61387752 None:intergenic
AAGAACAACCAGACCTCAAA+AGG 0.452594 8_3:+61384306 None:intergenic
TATTCTGAAATGAAAGATGC+TGG 0.453847 8_3:-61383485 Msa1299990:CDS
GTTCTGTGAGATGCACGGGC+AGG 0.454317 8_3:+61382272 None:intergenic
CATTAGCAGTATTTCACAGT+AGG 0.459795 8_3:+61383277 None:intergenic
AGTGGTTCATTAACAAGGTA+AGG 0.459915 8_3:+61382439 None:intergenic
GTATCTAGAGATAAGCTTGA+TGG 0.461373 8_3:-61386105 Msa1299990:CDS
GCAATTACTATGTTTGCTTG+TGG 0.462241 8_3:-61383841 Msa1299990:CDS
AATGCAGAAAATGTGATTAG+TGG 0.462667 8_3:+61382421 None:intergenic
TATATTCTAAAACAGAAATA+CGG 0.463212 8_3:+61382316 None:intergenic
ATCTAAAGCATTGTAAATCT+GGG 0.463691 8_3:+61382526 None:intergenic
GCAAGTTGCAAGTAATCCAT+TGG 0.467893 8_3:+61382982 None:intergenic
TAGATTAGTGGACCTAATAG+TGG 0.469849 8_3:-61382890 Msa1299990:three_prime_UTR
TTATTGCTTGCTGCAGCATA+CGG 0.474634 8_3:-61384107 Msa1299990:CDS
ATCAGGAAGTATTGTCTTGG+TGG 0.478363 8_3:-61386015 Msa1299990:CDS
TTGTTTATTGATTTATAATG+AGG 0.478668 8_3:+61383233 None:intergenic
CTCCGTTCTGTGAGATGCAC+GGG 0.486865 8_3:+61382268 None:intergenic
AAAGGGTAACAATCCAAAGA+AGG 0.493952 8_3:+61387513 None:intergenic
GATTATACTTTCATTTGACT+TGG 0.495806 8_3:+61383350 None:intergenic
AAGCATTGTAAATCTGGGAA+TGG 0.497146 8_3:+61382531 None:intergenic
TGCTAGAGCTTGAGCTTCCA+TGG 0.498539 8_3:+61386052 None:intergenic
GAGACAAAAGTTGGGTGTGT+TGG 0.498927 8_3:-61387910 Msa1299990:five_prime_UTR
GATATGATCACAAATATTGA+AGG 0.499741 8_3:-61383049 Msa1299990:three_prime_UTR
ATACAATCAAGTGGGGTTTG+TGG 0.501936 8_3:-61384142 Msa1299990:CDS
TCTGTGAGATGCACGGGCAG+GGG 0.502892 8_3:+61382274 None:intergenic
ATTATTATCATATTCAAGAC+AGG 0.503830 8_3:-61383075 Msa1299990:three_prime_UTR
AGCATTGTAAATCTGGGAAT+GGG 0.505970 8_3:+61382532 None:intergenic
CATCTCACAGAACGGAGTAT+TGG 0.507835 8_3:-61382262 Msa1299990:three_prime_UTR
TTCGATCGAAGCTGAAGCGA+AGG 0.511761 8_3:-61387736 Msa1299990:five_prime_UTR
TTTACAGTGCACAGAGCTAA+AGG 0.512707 8_3:+61383403 None:intergenic
ATGTTTGCTTGTGGGCTGGC+GGG 0.513382 8_3:-61383832 Msa1299990:CDS
TTTATCAGGAAGTATTGTCT+TGG 0.513796 8_3:-61386018 Msa1299990:CDS
CAAGTTGCAAGTAATCCATT+GGG 0.514649 8_3:+61382983 None:intergenic
CCAACATTGCAATTGAACAA+TGG 0.520803 8_3:+61384173 None:intergenic
ATTAGCAGTATTTCACAGTA+GGG 0.521447 8_3:+61383278 None:intergenic
GGGAGTAGTTGATTTGGCTC+CGG 0.521828 8_3:-61382555 Msa1299990:three_prime_UTR
GTTTGATTATAATGGGAAAG+TGG 0.524272 8_3:+61387794 None:intergenic
TGGATTCTTTGATGCTGAGT+GGG 0.525684 8_3:-61383465 Msa1299990:CDS
ATTAGGTCCACTAATCTACT+AGG 0.529715 8_3:+61382895 None:intergenic
AAGCCACTCTCACCTTAAGA+AGG 0.534774 8_3:+61385988 None:intergenic
AGACCAGGCAAGGTTTAAAA+GGG 0.535510 8_3:+61387496 None:intergenic
TTTATTGATTTATAATGAGG+TGG 0.536136 8_3:+61383236 None:intergenic
TTGATCAAGAGACAAAAGTT+GGG 0.536556 8_3:-61387918 None:intergenic
AATATCAATAGCCTCTGTAA+TGG 0.539878 8_3:-61387566 Msa1299990:CDS
TGGGACCCAGAATTAAATAG+TGG 0.540279 8_3:-61382870 Msa1299990:three_prime_UTR
GCATCTATAGTGCCTTAAGT+TGG 0.542094 8_3:-61383161 Msa1299990:three_prime_UTR
CTCCTGGAAAGGAGTTTGCA+TGG 0.543794 8_3:-61386163 Msa1299990:CDS
TTATAAATCAATAAACAAGC+TGG 0.544430 8_3:-61383228 Msa1299990:three_prime_UTR
TATGTTTGCTTGTGGGCTGG+CGG 0.548644 8_3:-61383833 Msa1299990:CDS
TTGGCAGTGCTCTCCTGGAA+AGG 0.557079 8_3:-61386174 Msa1299990:CDS
ACGACATAGTTGTAGAAAGT+TGG 0.561716 8_3:+61383883 None:intergenic
CGTGGATACATACATCATGA+TGG 0.572237 8_3:+61387837 None:intergenic
GTATGCACTGCACCTCCCAA+TGG 0.572512 8_3:-61382998 Msa1299990:three_prime_UTR
TTGTAAATCTGGGAATGGGC+CGG 0.573988 8_3:+61382536 None:intergenic
AAGGGTAACAATCCAAAGAA+GGG 0.578737 8_3:+61387514 None:intergenic
GGAGATAAATTGATATCAGT+AGG 0.580356 8_3:+61384327 None:intergenic
TGTCCTTCACTAACAAAACC+TGG 0.581911 8_3:-61382818 Msa1299990:three_prime_UTR
CACGTTCCTTGTTATTACAT+CGG 0.585183 8_3:-61387627 Msa1299990:CDS
GCACTATTTCGTCTTGATGA+CGG 0.588870 8_3:-61387865 Msa1299990:five_prime_UTR
GAGTAGCAGAGATCTGAGCC+AGG 0.589497 8_3:+61382800 None:intergenic
ATCAATAGCCTCTGTAATGG+TGG 0.591144 8_3:-61387563 Msa1299990:CDS
TAATAACAAGGAACGTGTCG+TGG 0.594007 8_3:+61387633 None:intergenic
ACTCCGTTCTGTGAGATGCA+CGG 0.596052 8_3:+61382267 None:intergenic
CTGGATTCTTTGATGCTGAG+TGG 0.598223 8_3:-61383466 Msa1299990:CDS
AGATTAGTGGACCTAATAGT+GGG 0.599080 8_3:-61382889 Msa1299990:three_prime_UTR
CCTGAAGAAAAGACCAGGCA+AGG 0.605366 8_3:+61387486 None:intergenic
TGAAGCTCAAATCGATGTTG+AGG 0.609134 8_3:-61387678 Msa1299990:CDS
TGCCCGTGCATCTCACAGAA+CGG 0.610768 8_3:-61382270 Msa1299990:three_prime_UTR
TGATTAGTGGTTCATTAACA+AGG 0.613884 8_3:+61382434 None:intergenic
AGCCACTCTCACCTTAAGAA+GGG 0.616505 8_3:+61385989 None:intergenic
TGTTAACTACATGAATGCCA+TGG 0.620040 8_3:-61386069 Msa1299990:CDS
AAGCACTCATACAATCAAGT+GGG 0.623017 8_3:-61384150 Msa1299990:CDS
TCGATCGAAGCTGAAGCGAA+GGG 0.626389 8_3:-61387735 Msa1299990:five_prime_UTR
ATCATCTATGTCAAGAAATG+CGG 0.627067 8_3:-61387708 Msa1299990:exon
GAAGCACTCATACAATCAAG+TGG 0.633106 8_3:-61384151 Msa1299990:CDS
CGACATACAGTCACAGCAGT+CGG 0.641417 8_3:+61386559 None:intergenic
TAAAGGATTACCAATTGCCG+AGG 0.660106 8_3:+61383797 None:intergenic
ATGTACCTGAAGAAAAGACC+AGG 0.671896 8_3:+61387481 None:intergenic
TATAAGAACCACCATTACAG+AGG 0.683262 8_3:+61387555 None:intergenic
GTTGCAAGTAATCCATTGGG+AGG 0.685119 8_3:+61382986 None:intergenic
ACAAAACCGATGTAATAACA+AGG 0.695504 8_3:+61387621 None:intergenic
TCTATGTCAAGAAATGCGGA+AGG 0.701038 8_3:-61387704 Msa1299990:CDS
AGCACTCATACAATCAAGTG+GGG 0.710230 8_3:-61384149 Msa1299990:CDS
TATGACTGACTATATTAACA+AGG 0.715848 8_3:+61382351 None:intergenic
TGTATGTCGTGGCAAGTGCG+AGG 0.718772 8_3:-61386545 Msa1299990:intron
ACTGCTGTGACTGTATGTCG+TGG 0.725345 8_3:-61386556 Msa1299990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAATAAAAATAATGA+TGG - chr8_3:61385406-61385425 Msa1299990:intron 10.0%
!! AGAAATTTCTAAATTAAAAT+GGG + chr8_3:61386239-61386258 None:intergenic 10.0%
!! GAATATAAAGTTATTATAAA+TGG - chr8_3:61387860-61387879 Msa1299990:five_prime_UTR 10.0%
!! TAACATTGTTTGATTATAAT+GGG + chr8_3:61382376-61382395 None:intergenic 15.0%
!! ATAACATTGTTTGATTATAA+TGG + chr8_3:61382377-61382396 None:intergenic 15.0%
!! AGTATTATATAAAAAGATGA+AGG + chr8_3:61382713-61382732 None:intergenic 15.0%
!! AAAAAAAGTTATTATTGCAT+TGG + chr8_3:61382807-61382826 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr8_3:61382871-61382890 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr8_3:61382895-61382914 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr8_3:61382894-61382913 Msa1299990:three_prime_UTR 15.0%
!!! TTAGACAAAATATTTGATTT+TGG - chr8_3:61383014-61383033 Msa1299990:three_prime_UTR 15.0%
!!! ATTTGATTTTGGAAAAATAA+TGG - chr8_3:61383025-61383044 Msa1299990:three_prime_UTR 15.0%
!!! TATTGACTTCTAATTTTTTA+TGG - chr8_3:61385049-61385068 Msa1299990:intron 15.0%
!! AATAAATCATACATTTATGT+TGG - chr8_3:61385477-61385496 Msa1299990:intron 15.0%
!!! TATTTGAACATTTTTCTAAA+TGG - chr8_3:61386084-61386103 Msa1299990:CDS 15.0%
!! GAGAAATTTCTAAATTAAAA+TGG + chr8_3:61386240-61386259 None:intergenic 15.0%
!! ATTCCATATAAAAATAGTAT+GGG + chr8_3:61386728-61386747 None:intergenic 15.0%
!!! TTGTTTATTGATTTATAATG+AGG + chr8_3:61386930-61386949 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr8_3:61387493-61387512 Msa1299990:CDS 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr8_3:61387494-61387513 Msa1299990:CDS 15.0%
!!! TATATTCTAAAACAGAAATA+CGG + chr8_3:61387847-61387866 None:intergenic 15.0%
!!! CATTTTGAAACAAATGTTTT+TGG + chr8_3:61382767-61382786 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr8_3:61382885-61382904 Msa1299990:three_prime_UTR 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr8_3:61382928-61382947 None:intergenic 20.0%
!! TCTTGATGTTATTGAAAATT+AGG - chr8_3:61383213-61383232 Msa1299990:three_prime_UTR 20.0%
!!! AAAATTTTAGACCTTCTTAA+TGG + chr8_3:61384850-61384869 None:intergenic 20.0%
!!! AAGGTCTAAAATTTTTGTTT+TGG - chr8_3:61384855-61384874 Msa1299990:intron 20.0%
!!! ATCCTTTTATTTATTGAACT+TGG + chr8_3:61385145-61385164 None:intergenic 20.0%
!!! CTTTTGATAATGAAAGAAAA+AGG + chr8_3:61385386-61385405 None:intergenic 20.0%
!! TCATTAAGCAAGTTTATTAT+TGG - chr8_3:61385559-61385578 Msa1299990:intron 20.0%
!! TTTAAGAGATAAAAATGCAT+TGG - chr8_3:61385637-61385656 Msa1299990:intron 20.0%
!!! CAATATATGTTTTTGGATTT+GGG - chr8_3:61385961-61385980 Msa1299990:intron 20.0%
!!! AATATATGTTTTTGGATTTG+GGG - chr8_3:61385962-61385981 Msa1299990:intron 20.0%
!! TAAAAAGTGAACTATTCTTT+CGG + chr8_3:61386166-61386185 None:intergenic 20.0%
!! TATTCTAATTGCAAAGATAA+AGG + chr8_3:61386383-61386402 None:intergenic 20.0%
!! TTTATCTTTGCAATTAGAAT+AGG - chr8_3:61386382-61386401 Msa1299990:intron 20.0%
!!! ATAGCTTTTGCAATAAATAA+CGG - chr8_3:61386423-61386442 Msa1299990:intron 20.0%
!! AGAAAAGTTACATAAAGAAA+TGG + chr8_3:61386511-61386530 None:intergenic 20.0%
!!! ATTTCTTTATGTAACTTTTC+TGG - chr8_3:61386510-61386529 Msa1299990:intron 20.0%
!!! ATTCCCATACTATTTTTATA+TGG - chr8_3:61386722-61386741 Msa1299990:intron 20.0%
!! CATTCCATATAAAAATAGTA+TGG + chr8_3:61386729-61386748 None:intergenic 20.0%
!!! CATACTATTTTTATATGGAA+TGG - chr8_3:61386727-61386746 Msa1299990:intron 20.0%
!!! TTTATTGATTTATAATGAGG+TGG + chr8_3:61386927-61386946 None:intergenic 20.0%
!! TTATAAATCAATAAACAAGC+TGG - chr8_3:61386932-61386951 Msa1299990:intron 20.0%
!! TGTCTTGAATATGATAATAA+TGG + chr8_3:61387086-61387105 None:intergenic 20.0%
!! ATTATTATCATATTCAAGAC+AGG - chr8_3:61387085-61387104 Msa1299990:intron 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG - chr8_3:61387428-61387447 Msa1299990:intron 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG - chr8_3:61387429-61387448 Msa1299990:intron 20.0%
!! AAAAGTGGAATATATTGTAT+TGG - chr8_3:61387452-61387471 Msa1299990:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr8_3:61387453-61387472 Msa1299990:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr8_3:61387563-61387582 Msa1299990:CDS 20.0%
!! TTAGATATTTTACAAGATCG+TGG + chr8_3:61382344-61382363 None:intergenic 25.0%
!! AATAATGGAGCAAATTTCAT+AGG - chr8_3:61383040-61383059 Msa1299990:three_prime_UTR 25.0%
!! ATAATGGAGCAAATTTCATA+GGG - chr8_3:61383041-61383060 Msa1299990:three_prime_UTR 25.0%
! AAAATTGAAATGTTGAAGGT+TGG - chr8_3:61383188-61383207 Msa1299990:three_prime_UTR 25.0%
! AAATTGAAATGTTGAAGGTT+GGG - chr8_3:61383189-61383208 Msa1299990:three_prime_UTR 25.0%
! TGATGTTATTGAAAATTAGG+TGG - chr8_3:61383216-61383235 Msa1299990:three_prime_UTR 25.0%
! GATGTTATTGAAAATTAGGT+GGG - chr8_3:61383217-61383236 Msa1299990:three_prime_UTR 25.0%
! ATGTTATTGAAAATTAGGTG+GGG - chr8_3:61383218-61383237 Msa1299990:three_prime_UTR 25.0%
! GCGTTTAATTAAGAAATCTA+GGG + chr8_3:61383263-61383282 None:intergenic 25.0%
! TGCGTTTAATTAAGAAATCT+AGG + chr8_3:61383264-61383283 None:intergenic 25.0%
!!! AATTTTTAAGCTCGGTAAAT+CGG - chr8_3:61383316-61383335 Msa1299990:three_prime_UTR 25.0%
! CTTTAATAACTACTCATTCA+AGG + chr8_3:61383350-61383369 None:intergenic 25.0%
! TGAATGAGTAGTTATTAAAG+TGG - chr8_3:61383350-61383369 Msa1299990:three_prime_UTR 25.0%
! GAATGAGTAGTTATTAAAGT+GGG - chr8_3:61383351-61383370 Msa1299990:three_prime_UTR 25.0%
! ACATGTGCATAACTAATTAT+GGG + chr8_3:61383403-61383422 None:intergenic 25.0%
! TACATGTGCATAACTAATTA+TGG + chr8_3:61383404-61383423 None:intergenic 25.0%
!! AAAAATAAGCCTAAGTTGAA+GGG + chr8_3:61383953-61383972 None:intergenic 25.0%
!! AAAAAATAAGCCTAAGTTGA+AGG + chr8_3:61383954-61383973 None:intergenic 25.0%
!!! TAGTTGTTTTGTAAAACATG+TGG - chr8_3:61384236-61384255 Msa1299990:intron 25.0%
! TAGACATTAAACACTTAAAC+TGG + chr8_3:61384278-61384297 None:intergenic 25.0%
! TACAAGGAAATTATACGAAA+CGG + chr8_3:61384320-61384339 None:intergenic 25.0%
! TTATGATTGCAAACCATATT+TGG - chr8_3:61384552-61384571 Msa1299990:intron 25.0%
!!! CTTTGTTATTGATCCAAATA+TGG + chr8_3:61384568-61384587 None:intergenic 25.0%
!! ATGAAAAATGGAATTTTCCA+TGG + chr8_3:61384811-61384830 None:intergenic 25.0%
! AGCATGAATACAGTTAAAAT+GGG + chr8_3:61384910-61384929 None:intergenic 25.0%
! TGCCAAGTTCAATAAATAAA+AGG - chr8_3:61385140-61385159 Msa1299990:intron 25.0%
! AGTGTTAACTGCAATTAAAA+TGG - chr8_3:61385285-61385304 Msa1299990:intron 25.0%
! TCACTCAATTTATAAATGAG+AGG + chr8_3:61385731-61385750 None:intergenic 25.0%
!! TATCAATTTATCTCCTTTTG+AGG - chr8_3:61385841-61385860 Msa1299990:intron 25.0%
! CAGTTTAAGAAGTAATCAAT+GGG + chr8_3:61385882-61385901 None:intergenic 25.0%
!! AATCAGGCAATATATGTTTT+TGG - chr8_3:61385954-61385973 Msa1299990:intron 25.0%
!!! GCAATATATGTTTTTGGATT+TGG - chr8_3:61385960-61385979 Msa1299990:intron 25.0%
!!! TGACACTTGTTATATTCTAA+AGG - chr8_3:61386209-61386228 Msa1299990:intron 25.0%
!!! GACACTTGTTATATTCTAAA+GGG - chr8_3:61386210-61386229 Msa1299990:intron 25.0%
!!! CTATTTTTATATGGAATGGA+CGG - chr8_3:61386731-61386750 Msa1299990:intron 25.0%
! GATTATACTTTCATTTGACT+TGG + chr8_3:61386813-61386832 None:intergenic 25.0%
! ACATTTCATTAAGATGTTGA+TGG + chr8_3:61386843-61386862 None:intergenic 25.0%
!! TCTCAATGAATGATAGTTTT+GGG + chr8_3:61386972-61386991 None:intergenic 25.0%
!! ATCTCAATGAATGATAGTTT+TGG + chr8_3:61386973-61386992 None:intergenic 25.0%
! GATATGATCACAAATATTGA+AGG - chr8_3:61387111-61387130 Msa1299990:intron 25.0%
! CAAATATTGAAGGCTTATAA+TGG - chr8_3:61387121-61387140 Msa1299990:intron 25.0%
! GTATTCCACTATTTAATTCT+GGG + chr8_3:61387298-61387317 None:intergenic 25.0%
! TGTATTCCACTATTTAATTC+TGG + chr8_3:61387299-61387318 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr8_3:61387540-61387559 Msa1299990:CDS 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr8_3:61387541-61387560 Msa1299990:CDS 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr8_3:61387562-61387581 Msa1299990:CDS 25.0%
!!! ATCTAAAGCATTGTAAATCT+GGG + chr8_3:61387637-61387656 None:intergenic 25.0%
!!! TATCTAAAGCATTGTAAATC+TGG + chr8_3:61387638-61387657 None:intergenic 25.0%
! TAAAAATAGAACTAGTGAGT+GGG + chr8_3:61387780-61387799 None:intergenic 25.0%
! ATAAAAATAGAACTAGTGAG+TGG + chr8_3:61387781-61387800 None:intergenic 25.0%
! TATGACTGACTATATTAACA+AGG + chr8_3:61387812-61387831 None:intergenic 25.0%
AAGACGAAATAGTGCTTTAA+TGG + chr8_3:61382290-61382309 None:intergenic 30.0%
! GTTTGATTATAATGGGAAAG+TGG + chr8_3:61382369-61382388 None:intergenic 30.0%
GATCGAATTCAGAAGAAAAT+GGG + chr8_3:61382411-61382430 None:intergenic 30.0%
ATCATCTATGTCAAGAAATG+CGG - chr8_3:61382452-61382471 Msa1299990:three_prime_UTR 30.0%
ACAAAACCGATGTAATAACA+AGG + chr8_3:61382542-61382561 None:intergenic 30.0%
AATATCAATAGCCTCTGTAA+TGG - chr8_3:61382594-61382613 Msa1299990:intron 30.0%
!! ATAGTGTGCTGACTATTAAT+TGG + chr8_3:61382846-61382865 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr8_3:61382976-61382995 None:intergenic 30.0%
!!! GACACTCATTTTGAAACAAA+GGG - chr8_3:61382981-61383000 Msa1299990:three_prime_UTR 30.0%
!!! ATAGGGAAGTTTTAATTGCT+TGG - chr8_3:61383058-61383077 Msa1299990:three_prime_UTR 30.0%
!!! TAGGGAAGTTTTAATTGCTT+GGG - chr8_3:61383059-61383078 Msa1299990:three_prime_UTR 30.0%
!! TTTTAATTGCTTGGGAGATA+AGG - chr8_3:61383067-61383086 Msa1299990:three_prime_UTR 30.0%
TGTAGACATACTTACAAGTA+TGG - chr8_3:61383121-61383140 Msa1299990:three_prime_UTR 30.0%
TGTTGAACTGTTAATCTATG+AGG - chr8_3:61383163-61383182 Msa1299990:three_prime_UTR 30.0%
GTTGAACTGTTAATCTATGA+GGG - chr8_3:61383164-61383183 Msa1299990:three_prime_UTR 30.0%
TTGAACTGTTAATCTATGAG+GGG - chr8_3:61383165-61383184 Msa1299990:three_prime_UTR 30.0%
AATTGAAATGTTGAAGGTTG+GGG - chr8_3:61383190-61383209 Msa1299990:three_prime_UTR 30.0%
TTAAAAATTGCTCGATTCCA+CGG + chr8_3:61383305-61383324 None:intergenic 30.0%
!! AATCGAGCAATTTTTAAGCT+CGG - chr8_3:61383308-61383327 Msa1299990:three_prime_UTR 30.0%
TGTAAAGTGAGTAATATCGA+CGG + chr8_3:61383457-61383476 None:intergenic 30.0%
TTACTCACTTTACAACCTAA+AGG - chr8_3:61383463-61383482 Msa1299990:CDS 30.0%
TACTCACTTTACAACCTAAA+GGG - chr8_3:61383464-61383483 Msa1299990:CDS 30.0%
AATACTCTACATCAATCTTC+GGG + chr8_3:61383812-61383831 None:intergenic 30.0%
CAATACTCTACATCAATCTT+CGG + chr8_3:61383813-61383832 None:intergenic 30.0%
ATTCAGTTGACAGTATGATT+TGG - chr8_3:61383901-61383920 Msa1299990:intron 30.0%
!!! TTTTTTAGACCCTTCAACTT+AGG - chr8_3:61383941-61383960 Msa1299990:intron 30.0%
GACAATACTTCCTGATAAAA+TGG + chr8_3:61384141-61384160 None:intergenic 30.0%
!! TTTATCAGGAAGTATTGTCT+TGG - chr8_3:61384142-61384161 Msa1299990:CDS 30.0%
AAAATCAAGTGCAACATACA+AGG + chr8_3:61384336-61384355 None:intergenic 30.0%
TCATATAGTGAGATAAGACT+TGG + chr8_3:61384389-61384408 None:intergenic 30.0%
! AAGTCTTATCTCACTATATG+AGG - chr8_3:61384388-61384407 Msa1299990:intron 30.0%
! GTGCTATGAACACAATTTTA+AGG - chr8_3:61384589-61384608 Msa1299990:intron 30.0%
GTTTAACATTGTGTTTGATG+TGG + chr8_3:61384623-61384642 None:intergenic 30.0%
! TAGATTATGAACATCGACTA+AGG + chr8_3:61384701-61384720 None:intergenic 30.0%
!!! GAAAGTGTCTCTAAACTTTT+TGG - chr8_3:61384773-61384792 Msa1299990:intron 30.0%
! AATGGAATTTTCCATGGAAT+TGG + chr8_3:61384805-61384824 None:intergenic 30.0%
GGGTTACAGAAAATGAAAAA+TGG + chr8_3:61384823-61384842 None:intergenic 30.0%
GCATGAATACAGTTAAAATG+GGG + chr8_3:61384909-61384928 None:intergenic 30.0%
CAGCATGAATACAGTTAAAA+TGG + chr8_3:61384911-61384930 None:intergenic 30.0%
! TCTCAGAATTTAAAACCCTT+AGG - chr8_3:61384948-61384967 Msa1299990:intron 30.0%
AATAAAGACATCTAGCCTAA+GGG + chr8_3:61384966-61384985 None:intergenic 30.0%
TCCAGTAGAGAAACTTATTT+GGG + chr8_3:61384997-61385016 None:intergenic 30.0%
! CTTGTAACTATTTTCAATCG+TGG - chr8_3:61385435-61385454 Msa1299990:intron 30.0%
CTCTTAAAGCAAAAAAACAG+TGG + chr8_3:61385625-61385644 None:intergenic 30.0%
TAAGTTTGTAAGCCCATAAA+AGG - chr8_3:61385693-61385712 Msa1299990:intron 30.0%
ATTTATAAATGAGAGGTCAC+AGG + chr8_3:61385724-61385743 None:intergenic 30.0%
GGAGATAAATTGATATCAGT+AGG + chr8_3:61385836-61385855 None:intergenic 30.0%
GCAGTTTAAGAAGTAATCAA+TGG + chr8_3:61385883-61385902 None:intergenic 30.0%
ACTCATCTTCTGCTAATTAA+GGG - chr8_3:61385925-61385944 Msa1299990:intron 30.0%
TAATTAAGGGCTTTCAAATC+AGG - chr8_3:61385938-61385957 Msa1299990:intron 30.0%
CAACATTGCAATTGAACAAT+GGG + chr8_3:61385989-61386008 None:intergenic 30.0%
CAATTACTATGTTTGCTTGT+GGG - chr8_3:61386320-61386339 Msa1299990:intron 30.0%
!! TATTCTGAAATGAAAGATGC+TGG - chr8_3:61386675-61386694 Msa1299990:intron 30.0%
!! TACTTTCATTTGACTTGGTT+AGG + chr8_3:61386808-61386827 None:intergenic 30.0%
! TTAAGATGTTGATGGATCAT+TGG + chr8_3:61386835-61386854 None:intergenic 30.0%
ATTAGCAGTATTTCACAGTA+GGG + chr8_3:61386885-61386904 None:intergenic 30.0%
TGTAAATTGATGCCAACTTA+AGG + chr8_3:61387014-61387033 None:intergenic 30.0%
ACATACAACTACTATGTTTG+AGG - chr8_3:61387044-61387063 Msa1299990:intron 30.0%
CAAAGTAGGTCAATTATATC+GGG + chr8_3:61387393-61387412 None:intergenic 30.0%
CCAAAGTAGGTCAATTATAT+CGG + chr8_3:61387394-61387413 None:intergenic 30.0%
TGTATAAATGAAGGGAAAAG+TGG - chr8_3:61387437-61387456 Msa1299990:intron 30.0%
TGATTAGTGGTTCATTAACA+AGG + chr8_3:61387729-61387748 None:intergenic 30.0%
AATGCAGAAAATGTGATTAG+TGG + chr8_3:61387742-61387761 None:intergenic 30.0%
CGATCGAATTCAGAAGAAAA+TGG + chr8_3:61382412-61382431 None:intergenic 35.0%
!! CACGTTCCTTGTTATTACAT+CGG - chr8_3:61382533-61382552 Msa1299990:three_prime_UTR 35.0%
GAGGCTATTGATATTCTTCT+TGG + chr8_3:61382589-61382608 None:intergenic 35.0%
TATAAGAACCACCATTACAG+AGG + chr8_3:61382608-61382627 None:intergenic 35.0%
! AATCCAAAGAAGGGCATAAT+AGG + chr8_3:61382640-61382659 None:intergenic 35.0%
AAGGGTAACAATCCAAAGAA+GGG + chr8_3:61382649-61382668 None:intergenic 35.0%
AAAGGGTAACAATCCAAAGA+AGG + chr8_3:61382650-61382669 None:intergenic 35.0%
!! TGTGCTGACTATTAATTGGA+GGG + chr8_3:61382842-61382861 None:intergenic 35.0%
!!! CGACACTCATTTTGAAACAA+AGG - chr8_3:61382980-61382999 Msa1299990:three_prime_UTR 35.0%
GGGGAAAATTGAAATGTTGA+AGG - chr8_3:61383184-61383203 Msa1299990:three_prime_UTR 35.0%
AACGCAGTTAGTTAGTTAGT+TGG - chr8_3:61383278-61383297 Msa1299990:three_prime_UTR 35.0%
TGTGCATAACTAATTATGGG+TGG + chr8_3:61383400-61383419 None:intergenic 35.0%
ACTCACTTTACAACCTAAAG+GGG - chr8_3:61383465-61383484 Msa1299990:CDS 35.0%
TAAAGTGAACAATCCCCTTT+AGG + chr8_3:61383481-61383500 None:intergenic 35.0%
!!! AACCCAATGCTTTAAGGTTT+TGG - chr8_3:61383683-61383702 Msa1299990:CDS 35.0%
!!! ACCCAATGCTTTAAGGTTTT+GGG - chr8_3:61383684-61383703 Msa1299990:CDS 35.0%
! TCCCAAAACCTTAAAGCATT+GGG + chr8_3:61383688-61383707 None:intergenic 35.0%
ATCCCAAAACCTTAAAGCAT+TGG + chr8_3:61383689-61383708 None:intergenic 35.0%
!! TGTAGAGTATTGACCATTCT+TGG - chr8_3:61383821-61383840 Msa1299990:CDS 35.0%
!! GATGAAGCATTTTCCAAGAA+TGG + chr8_3:61383837-61383856 None:intergenic 35.0%
TTGTCATTGTTTACGACATC+AGG - chr8_3:61384026-61384045 Msa1299990:intron 35.0%
GTATCTAGAGATAAGCTTGA+TGG - chr8_3:61384055-61384074 Msa1299990:intron 35.0%
TGTTAACTACATGAATGCCA+TGG - chr8_3:61384091-61384110 Msa1299990:CDS 35.0%
! GCACATACTTCCATTTTATC+AGG - chr8_3:61384128-61384147 Msa1299990:CDS 35.0%
CTTATCTCACTATATGAGGT+CGG - chr8_3:61384392-61384411 Msa1299990:intron 35.0%
ATCAGGGTTTGTCATCTTAA+AGG + chr8_3:61384654-61384673 None:intergenic 35.0%
ACAAACCCTGATAAGTTCAT+GGG - chr8_3:61384662-61384681 Msa1299990:intron 35.0%
TAGTTCCCATGAACTTATCA+GGG + chr8_3:61384670-61384689 None:intergenic 35.0%
AGACACTTTCAAGCAAGTTT+AGG + chr8_3:61384763-61384782 None:intergenic 35.0%
TTTGGATTCTACCAATTCCA+TGG - chr8_3:61384791-61384810 Msa1299990:intron 35.0%
TAGACCTTCTTAATGGCTTT+GGG + chr8_3:61384843-61384862 None:intergenic 35.0%
TTAGACCTTCTTAATGGCTT+TGG + chr8_3:61384844-61384863 None:intergenic 35.0%
ACAGTTAAAATGGGGAAACA+TGG + chr8_3:61384901-61384920 None:intergenic 35.0%
CAATAAAGACATCTAGCCTA+AGG + chr8_3:61384967-61384986 None:intergenic 35.0%
CCAGTAGAGAAACTTATTTG+GGG + chr8_3:61384996-61385015 None:intergenic 35.0%
GTCCAGTAGAGAAACTTATT+TGG + chr8_3:61384998-61385017 None:intergenic 35.0%
TCCCAAATTAAATGTTGTCC+TGG - chr8_3:61385087-61385106 Msa1299990:intron 35.0%
! GCCAGGACAACATTTAATTT+GGG + chr8_3:61385091-61385110 None:intergenic 35.0%
TGCCAGGACAACATTTAATT+TGG + chr8_3:61385092-61385111 None:intergenic 35.0%
TAGATCTGTCTTATCTGATG+TGG - chr8_3:61385166-61385185 Msa1299990:intron 35.0%
!! CAGTGTCTTCTACTTTTCTT+TGG + chr8_3:61385586-61385605 None:intergenic 35.0%
CTGTAGCATATAAAGAACAG+AGG + chr8_3:61385783-61385802 None:intergenic 35.0%
!!! ATTTATCTCCTTTTGAGGTC+TGG - chr8_3:61385846-61385865 Msa1299990:intron 35.0%
TAAACTGCTTATGTCATGTG+TGG - chr8_3:61385895-61385914 Msa1299990:intron 35.0%
GACTCATCTTCTGCTAATTA+AGG - chr8_3:61385924-61385943 Msa1299990:intron 35.0%
CCAACATTGCAATTGAACAA+TGG + chr8_3:61385990-61386009 None:intergenic 35.0%
CCATTGTTCAATTGCAATGT+TGG - chr8_3:61385987-61386006 Msa1299990:intron 35.0%
AAGCACTCATACAATCAAGT+GGG - chr8_3:61386010-61386029 Msa1299990:CDS 35.0%
ACGACATAGTTGTAGAAAGT+TGG + chr8_3:61386280-61386299 None:intergenic 35.0%
GCAATTACTATGTTTGCTTG+TGG - chr8_3:61386319-61386338 Msa1299990:intron 35.0%
CATTAGCAGTATTTCACAGT+AGG + chr8_3:61386886-61386905 None:intergenic 35.0%
CATACTAGTACAAAAAGCAG+TGG + chr8_3:61387147-61387166 None:intergenic 35.0%
CAAGTTGCAAGTAATCCATT+GGG + chr8_3:61387180-61387199 None:intergenic 35.0%
AATGACTCCTAGTAGATTAG+TGG - chr8_3:61387258-61387277 Msa1299990:intron 35.0%
ATTAGGTCCACTAATCTACT+AGG + chr8_3:61387268-61387287 None:intergenic 35.0%
! TAGATTAGTGGACCTAATAG+TGG - chr8_3:61387270-61387289 Msa1299990:intron 35.0%
! AGATTAGTGGACCTAATAGT+GGG - chr8_3:61387271-61387290 Msa1299990:intron 35.0%
CCGATATAATTGACCTACTT+TGG - chr8_3:61387391-61387410 Msa1299990:intron 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr8_3:61387407-61387426 None:intergenic 35.0%
AGAAAATGGGTCACTTATTC+CGG - chr8_3:61387576-61387595 Msa1299990:CDS 35.0%
AGCATTGTAAATCTGGGAAT+GGG + chr8_3:61387631-61387650 None:intergenic 35.0%
! AAGCATTGTAAATCTGGGAA+TGG + chr8_3:61387632-61387651 None:intergenic 35.0%
AGTGGTTCATTAACAAGGTA+AGG + chr8_3:61387724-61387743 None:intergenic 35.0%
GCACTATTTCGTCTTGATGA+CGG - chr8_3:61382295-61382314 Msa1299990:three_prime_UTR 40.0%
CGTGGATACATACATCATGA+TGG + chr8_3:61382326-61382345 None:intergenic 40.0%
TCTATGTCAAGAAATGCGGA+AGG - chr8_3:61382456-61382475 Msa1299990:three_prime_UTR 40.0%
!! TCAACATCGATTTGAGCTTC+AGG + chr8_3:61382483-61382502 None:intergenic 40.0%
TGAAGCTCAAATCGATGTTG+AGG - chr8_3:61382482-61382501 Msa1299990:three_prime_UTR 40.0%
TAATAACAAGGAACGTGTCG+TGG + chr8_3:61382530-61382549 None:intergenic 40.0%
ATCAATAGCCTCTGTAATGG+TGG - chr8_3:61382597-61382616 Msa1299990:intron 40.0%
CTTCCTATTATGCCCTTCTT+TGG - chr8_3:61382634-61382653 Msa1299990:intron 40.0%
! TTACCCTTTTAAACCTTGCC+TGG - chr8_3:61382661-61382680 Msa1299990:intron 40.0%
AGACCAGGCAAGGTTTAAAA+GGG + chr8_3:61382667-61382686 None:intergenic 40.0%
AAGACCAGGCAAGGTTTAAA+AGG + chr8_3:61382668-61382687 None:intergenic 40.0%
ATGTACCTGAAGAAAAGACC+AGG + chr8_3:61382682-61382701 None:intergenic 40.0%
!! GTGTGCTGACTATTAATTGG+AGG + chr8_3:61382843-61382862 None:intergenic 40.0%
ATTGAAAATTAGGTGGGGCT+AGG - chr8_3:61383223-61383242 Msa1299990:three_prime_UTR 40.0%
TTAGTTAGTTAGTTGGACCG+TGG - chr8_3:61383285-61383304 Msa1299990:three_prime_UTR 40.0%
GTGAGTTAGAAGTCCAACAT+TGG - chr8_3:61383637-61383656 Msa1299990:CDS 40.0%
GTTAGAAGTCCAACATTGGA+TGG - chr8_3:61383641-61383660 Msa1299990:CDS 40.0%
!!! GTCACTTTTCCATCCAATGT+TGG + chr8_3:61383653-61383672 None:intergenic 40.0%
!! CCTTAAAGCATTGGGTTTGT+GGG + chr8_3:61383680-61383699 None:intergenic 40.0%
!! ACCTTAAAGCATTGGGTTTG+TGG + chr8_3:61383681-61383700 None:intergenic 40.0%
! TTGGGATGAGATTTGAGATG+TGG - chr8_3:61383702-61383721 Msa1299990:intron 40.0%
TGTGTCCAAATTCACTTGTG+TGG - chr8_3:61383725-61383744 Msa1299990:intron 40.0%
AGCAACCACACAAGTGAATT+TGG + chr8_3:61383733-61383752 None:intergenic 40.0%
! GAAATGGATTTCCAGCTGTT+GGG + chr8_3:61383783-61383802 None:intergenic 40.0%
AATCTTCGGGTACAAGGAAA+TGG + chr8_3:61383799-61383818 None:intergenic 40.0%
TACATCAATCTTCGGGTACA+AGG + chr8_3:61383805-61383824 None:intergenic 40.0%
!!! GGCTTATTTTTTGCTTGAGC+AGG - chr8_3:61383962-61383981 Msa1299990:intron 40.0%
!!! ATTTTTTGCTTGAGCAGGCT+TGG - chr8_3:61383967-61383986 Msa1299990:intron 40.0%
!! ATCAGGAAGTATTGTCTTGG+TGG - chr8_3:61384145-61384164 Msa1299990:CDS 40.0%
TAAGACTTGGAAGTTGGAAG+TGG + chr8_3:61384376-61384395 None:intergenic 40.0%
GTGAGATAAGACTTGGAAGT+TGG + chr8_3:61384382-61384401 None:intergenic 40.0%
AAATGCCACTACAAAGGTCA+CGG + chr8_3:61384471-61384490 None:intergenic 40.0%
! ACCTTTGTAGTGGCATTTTG+CGG - chr8_3:61384473-61384492 Msa1299990:intron 40.0%
GATCAGTTCATTTCAGCATG+TGG - chr8_3:61384525-61384544 Msa1299990:intron 40.0%
GACAAACCCTGATAAGTTCA+TGG - chr8_3:61384661-61384680 Msa1299990:intron 40.0%
GTAGTTCCCATGAACTTATC+AGG + chr8_3:61384671-61384690 None:intergenic 40.0%
GTAACCCAAAGCCATTAAGA+AGG - chr8_3:61384836-61384855 Msa1299990:intron 40.0%
CCCCAAATAAGTTTCTCTAC+TGG - chr8_3:61384993-61385012 Msa1299990:intron 40.0%
TTGCATGTGACTAAAGAGAC+AGG + chr8_3:61385263-61385282 None:intergenic 40.0%
AGCAAAAAAACAGTGGTGCA+AGG + chr8_3:61385618-61385637 None:intergenic 40.0%
! TCACAGGCAAAGCCTTTTAT+GGG + chr8_3:61385708-61385727 None:intergenic 40.0%
AAGAACAACCAGACCTCAAA+AGG + chr8_3:61385857-61385876 None:intergenic 40.0%
! GAAGCACTCATACAATCAAG+TGG - chr8_3:61386009-61386028 Msa1299990:CDS 40.0%
AGCACTCATACAATCAAGTG+GGG - chr8_3:61386011-61386030 Msa1299990:CDS 40.0%
ATACAATCAAGTGGGGTTTG+TGG - chr8_3:61386018-61386037 Msa1299990:CDS 40.0%
! TTATTGCTTGCTGCAGCATA+CGG - chr8_3:61386053-61386072 Msa1299990:CDS 40.0%
! AGTGTTGAAGTATACTCACG+AGG + chr8_3:61386122-61386141 None:intergenic 40.0%
ACAAGTGTCAAATAACGCAG+CGG + chr8_3:61386199-61386218 None:intergenic 40.0%
TAAAGGATTACCAATTGCCG+AGG + chr8_3:61386366-61386385 None:intergenic 40.0%
CGGATATTCTTGTCATCTGT+AGG - chr8_3:61386443-61386462 Msa1299990:intron 40.0%
AATAGCGACGATTGCTTACT+TGG + chr8_3:61386546-61386565 None:intergenic 40.0%
TGGATTCTTTGATGCTGAGT+GGG - chr8_3:61386695-61386714 Msa1299990:intron 40.0%
TTTACAGTGCACAGAGCTAA+AGG + chr8_3:61386760-61386779 None:intergenic 40.0%
GCATCTATAGTGCCTTAAGT+TGG - chr8_3:61386999-61387018 Msa1299990:intron 40.0%
GCAAGTTGCAAGTAATCCAT+TGG + chr8_3:61387181-61387200 None:intergenic 40.0%
TAATTCTGGGTCCCACTATT+AGG + chr8_3:61387285-61387304 None:intergenic 40.0%
TGGGACCCAGAATTAAATAG+TGG - chr8_3:61387290-61387309 Msa1299990:intron 40.0%
TGTCCTTCACTAACAAAACC+TGG - chr8_3:61387342-61387361 Msa1299990:intron 40.0%
GTAGGTCAATTATATCGGGA+CGG + chr8_3:61387389-61387408 None:intergenic 40.0%
GAAAATGGGTCACTTATTCC+GGG - chr8_3:61387577-61387596 Msa1299990:CDS 40.0%
CCCACAAACCCAATGCTTTA+AGG - chr8_3:61383677-61383696 Msa1299990:CDS 45.0%
! GGAAATGGATTTCCAGCTGT+TGG + chr8_3:61383784-61383803 None:intergenic 45.0%
TTCCATGCAAACTCCTTTCC+AGG + chr8_3:61384002-61384021 None:intergenic 45.0%
! CTTGGTGGATACCCTTCTTA+AGG - chr8_3:61384160-61384179 Msa1299990:CDS 45.0%
TACCCTTCTTAAGGTGAGAG+TGG - chr8_3:61384169-61384188 Msa1299990:CDS 45.0%
AGCCACTCTCACCTTAAGAA+GGG + chr8_3:61384174-61384193 None:intergenic 45.0%
AAGCCACTCTCACCTTAAGA+AGG + chr8_3:61384175-61384194 None:intergenic 45.0%
ATCTCACTATATGAGGTCGG+TGG - chr8_3:61384395-61384414 Msa1299990:intron 45.0%
GAAAACCGTGACCTTTGTAG+TGG - chr8_3:61384463-61384482 Msa1299990:intron 45.0%
TCCGCAAAATGCCACTACAA+AGG + chr8_3:61384477-61384496 None:intergenic 45.0%
CTGAGAAGTTGAGAGATGCA+TGG + chr8_3:61384934-61384953 None:intergenic 45.0%
ATCTAAACAGCAGCTATGCC+AGG + chr8_3:61385108-61385127 None:intergenic 45.0%
! GTCACAGGCAAAGCCTTTTA+TGG + chr8_3:61385709-61385728 None:intergenic 45.0%
TACTATGTTTGCTTGTGGGC+TGG - chr8_3:61386324-61386343 Msa1299990:intron 45.0%
! GCAGGAGGAAGACTTTCTTT+TGG - chr8_3:61386641-61386660 Msa1299990:intron 45.0%
CTGGATTCTTTGATGCTGAG+TGG - chr8_3:61386694-61386713 Msa1299990:intron 45.0%
GTTGCAAGTAATCCATTGGG+AGG + chr8_3:61387177-61387196 None:intergenic 45.0%
!!! GAGCCAGGTTTTGTTAGTGA+AGG + chr8_3:61387348-61387367 None:intergenic 45.0%
GTCAATTATATCGGGACGGA+GGG + chr8_3:61387385-61387404 None:intergenic 45.0%
TTGTAAATCTGGGAATGGGC+CGG + chr8_3:61387627-61387646 None:intergenic 45.0%
CATCTCACAGAACGGAGTAT+TGG - chr8_3:61387898-61387917 Msa1299990:five_prime_UTR 45.0%
TTCGATCGAAGCTGAAGCGA+AGG - chr8_3:61382424-61382443 Msa1299990:three_prime_UTR 50.0%
TCGATCGAAGCTGAAGCGAA+GGG - chr8_3:61382425-61382444 Msa1299990:three_prime_UTR 50.0%
CCTGAAGAAAAGACCAGGCA+AGG + chr8_3:61382677-61382696 None:intergenic 50.0%
!! CCTTGCCTGGTCTTTTCTTC+AGG - chr8_3:61382674-61382693 Msa1299990:intron 50.0%
CGACATACAGTCACAGCAGT+CGG + chr8_3:61383604-61383623 None:intergenic 50.0%
ACTGCTGTGACTGTATGTCG+TGG - chr8_3:61383604-61383623 Msa1299990:intron 50.0%
CTCCTGGAAAGGAGTTTGCA+TGG - chr8_3:61383997-61384016 Msa1299990:intron 50.0%
TGCTAGAGCTTGAGCTTCCA+TGG + chr8_3:61384111-61384130 None:intergenic 50.0%
!! TTGGAAGTGGTGGTGGTTGA+TGG + chr8_3:61384363-61384382 None:intergenic 50.0%
TTGGAAGTTGGAAGTGGTGG+TGG + chr8_3:61384370-61384389 None:intergenic 50.0%
GACTTGGAAGTTGGAAGTGG+TGG + chr8_3:61384373-61384392 None:intergenic 50.0%
! GTAGTGGCATTTTGCGGAGA+AGG - chr8_3:61384479-61384498 Msa1299990:intron 50.0%
CAAATAACGCAGCGGTGTGA+TGG + chr8_3:61386191-61386210 None:intergenic 50.0%
!! TATGTTTGCTTGTGGGCTGG+CGG - chr8_3:61386327-61386346 Msa1299990:intron 50.0%
GGTCAATTATATCGGGACGG+AGG + chr8_3:61387386-61387405 None:intergenic 50.0%
ATGGGTCACTTATTCCGGGA+CGG - chr8_3:61387581-61387600 Msa1299990:CDS 50.0%
GACGGAGGGAGTAGTTGATT+TGG - chr8_3:61387599-61387618 Msa1299990:CDS 50.0%
!! GGGAGTAGTTGATTTGGCTC+CGG - chr8_3:61387605-61387624 Msa1299990:CDS 50.0%
ACTCCGTTCTGTGAGATGCA+CGG + chr8_3:61387896-61387915 None:intergenic 50.0%
TGTATGTCGTGGCAAGTGCG+AGG - chr8_3:61383615-61383634 Msa1299990:intron 55.0%
TTTCCAGCTGTTGGGTCGTG+AGG + chr8_3:61383775-61383794 None:intergenic 55.0%
TTGGCAGTGCTCTCCTGGAA+AGG - chr8_3:61383986-61384005 Msa1299990:intron 55.0%
TTTCTCTCACCCTTGCAGCG+AGG - chr8_3:61386254-61386273 Msa1299990:intron 55.0%
! GAAAGTTGGCCTCGCTGCAA+GGG + chr8_3:61386266-61386285 None:intergenic 55.0%
! AGAAAGTTGGCCTCGCTGCA+AGG + chr8_3:61386267-61386286 None:intergenic 55.0%
!! ATGTTTGCTTGTGGGCTGGC+GGG - chr8_3:61386328-61386347 Msa1299990:intron 55.0%
! TTGCACTACGCACTTGCTGC+AGG - chr8_3:61386623-61386642 Msa1299990:intron 55.0%
GTATGCACTGCACCTCCCAA+TGG - chr8_3:61387162-61387181 Msa1299990:intron 55.0%
GAGTAGCAGAGATCTGAGCC+AGG + chr8_3:61387363-61387382 None:intergenic 55.0%
GTCACTTATTCCGGGACGGA+GGG - chr8_3:61387585-61387604 Msa1299990:CDS 55.0%
ATCAACTACTCCCTCCGTCC+CGG + chr8_3:61387598-61387617 None:intergenic 55.0%
TTCTGTGAGATGCACGGGCA+GGG + chr8_3:61387890-61387909 None:intergenic 55.0%
TGCCCGTGCATCTCACAGAA+CGG - chr8_3:61387890-61387909 Msa1299990:five_prime_UTR 55.0%
CTCCGTTCTGTGAGATGCAC+GGG + chr8_3:61387895-61387914 None:intergenic 55.0%
TCTCCTCACGACCCAACAGC+TGG - chr8_3:61383769-61383788 Msa1299990:intron 60.0%
!! TTGGTGCTGGCCTCGGCAAT+TGG - chr8_3:61386353-61386372 Msa1299990:intron 60.0%
! CACTACGCACTTGCTGCAGG+AGG - chr8_3:61386626-61386645 Msa1299990:intron 60.0%
GGTCACTTATTCCGGGACGG+AGG - chr8_3:61387584-61387603 Msa1299990:CDS 60.0%
TCTGTGAGATGCACGGGCAG+GGG + chr8_3:61387889-61387908 None:intergenic 60.0%
GTTCTGTGAGATGCACGGGC+AGG + chr8_3:61387891-61387910 None:intergenic 60.0%
CAGGCTTGGCAGTGCTCTCC+TGG - chr8_3:61383981-61384000 Msa1299990:intron 65.0%
!! GCTTGTGGGCTGGCGGGAAT+TGG - chr8_3:61386334-61386353 Msa1299990:intron 65.0%
!! GCGGGAATTGGTGCTGGCCT+CGG - chr8_3:61386346-61386365 Msa1299990:intron 65.0%
! GGGCTGGCGGGAATTGGTGC+TGG - chr8_3:61386340-61386359 Msa1299990:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61382252 61387930 61382252 ID=Msa1299990;Name=Msa1299990
chr8_3 mRNA 61382252 61387930 61382252 ID=Msa1299990-mRNA-1;Parent=Msa1299990;Name=Msa1299990-mRNA-1;_AED=0.15;_eAED=0.15;_QI=207|0.5|0.77|0.88|0.87|0.77|9|979|327
chr8_3 exon 61382252 61382576 61382252 ID=Msa1299990-mRNA-1:exon:18112;Parent=Msa1299990-mRNA-1
chr8_3 exon 61382806 61383537 61382806 ID=Msa1299990-mRNA-1:exon:18111;Parent=Msa1299990-mRNA-1
chr8_3 exon 61383636 61383717 61383636 ID=Msa1299990-mRNA-1:exon:18110;Parent=Msa1299990-mRNA-1
chr8_3 exon 61383808 61383910 61383808 ID=Msa1299990-mRNA-1:exon:18109;Parent=Msa1299990-mRNA-1
chr8_3 exon 61384060 61384222 61384060 ID=Msa1299990-mRNA-1:exon:18108;Parent=Msa1299990-mRNA-1
chr8_3 exon 61384320 61384379 61384320 ID=Msa1299990-mRNA-1:exon:18107;Parent=Msa1299990-mRNA-1
chr8_3 exon 61386001 61386198 61386001 ID=Msa1299990-mRNA-1:exon:18106;Parent=Msa1299990-mRNA-1
chr8_3 exon 61386546 61386608 61386546 ID=Msa1299990-mRNA-1:exon:18105;Parent=Msa1299990-mRNA-1
chr8_3 exon 61387487 61387930 61387487 ID=Msa1299990-mRNA-1:exon:18104;Parent=Msa1299990-mRNA-1
chr8_3 five_prime_UTR 61387724 61387930 61387724 ID=Msa1299990-mRNA-1:five_prime_utr;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61387487 61387723 61387487 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61386546 61386608 61386546 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61386001 61386198 61386001 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61384320 61384379 61384320 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61384060 61384222 61384060 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61383808 61383910 61383808 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61383636 61383717 61383636 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 CDS 61383460 61383537 61383460 ID=Msa1299990-mRNA-1:cds;Parent=Msa1299990-mRNA-1
chr8_3 three_prime_UTR 61382806 61383459 61382806 ID=Msa1299990-mRNA-1:three_prime_utr;Parent=Msa1299990-mRNA-1
chr8_3 three_prime_UTR 61382252 61382576 61382252 ID=Msa1299990-mRNA-1:three_prime_utr;Parent=Msa1299990-mRNA-1
Gene Sequence

>Msa1299990

ATGTCAAGAAATGCGGAAGGTCCTGAAGCTCAAATCGATGTTGAGGATCTGAATTTGAACTGCAATGTCCACGACACGTTCCTTGTTATTACATCGGTTTTGTTTGTTTTGTATCTCGCTCTCAAAGCCAAGAAGAATATCAATAGCCTCTGTAATGGTGGTTCTTATATTATTGCTTCCTATTATGCCCTTCTTTGGATTGTTACCCTTTTAAACCTTGCCTGGTCTTTTCTTCAGAAGAGTCTTGTTCTACAACTTGATCTACCGACTGCTGTGACTGTATGTCGTGGCAAGTGCGAGGCTTGGCAGTGCTCTCCTGGAAAGGAGTTTGCATGGAATGCGTTGTCATTGTTTACGACATCAGGTATGCTGTATCTAGAGATAAGCTTGATGGCTTTCTTACTAAATGTTAACTACATGAATGCCATGGAAGCTCAAGCTCTAGCACATACTTCCATTTTATCAGGAAGTATTGTCTTGGTGGATACCCTTCTTAAGCTTGTGTTTAGATTTGTGTTGTTATTATGTCCTACTGATATCAATTTATCTCCTTTTGAGGCAATATATGTTTTTGGATTTGGGGTCCCATTGTTCAATTGCAATGTTGGAAGCACTCATACAATCAAGTGGGGTTTGTGGACAGTACATAAGTTATTGCTTGCTGCAGCATACGGCTTCATTTTATTTGAACATTTTTCTAAATGGAGAGAAAAGCTGCCTCCGAGGCCAACTTTCTACAACTATGTCGTCGTAATGTTTATATTCAGTGCAATTACTATGTTTGCTTGTGGGCTGGCGGGAATTGGTGCTGGCCTCGGCAATTGGCTGTATGATTTTACTGTACTATGTTATCACTCTTTATATCTTCCATTTCTTTATGTAACTTTTCTGGCAGATTTTTTCCAAGAGGAAGACTTTCTTTTGGACAACGCATATTATTCTGAAATGAAAGATGCTGGATTCTTTGATGCTGAGTGGGAATAA
Protein sequence

>Msa1299990

MSRNAEGPEAQIDVEDLNLNCNVHDTFLVITSVLFVLYLALKAKKNINSLCNGGSYIIASYYALLWIVTLLNLAWSFLQKSLVLQLDLPTAVTVCRGKCEAWQCSPGKEFAWNALSLFTTSGMLYLEISLMAFLLNVNYMNAMEAQALAHTSILSGSIVLVDTLLKLVFRFVLLLCPTDINLSPFEAIYVFGFGVPLFNCNVGSTHTIKWGLWTVHKLLLAAAYGFILFEHFSKWREKLPPRPTFYNYVVVMFIFSAITMFACGLAGIGAGLGNWLYDFTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE*