AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693010 MtrunA17_Chr4g0043301 99.200 500 4 0 1 500 1 500 0.0 1022
Msa0693010 MtrunA17_Chr7g0263711 93.600 500 32 0 1 500 1 500 0.0 969
Msa0693010 MtrunA17_Chr4g0043311 89.336 497 53 0 4 500 1 497 0.0 926
Msa0693010 MtrunA17_Chr6g0448901 78.819 491 104 0 10 500 20 510 0.0 818
Msa0693010 MtrunA17_Chr7g0265591 42.485 499 275 7 12 500 30 526 1.31e-128 384
Msa0693010 MtrunA17_Chr1g0197911 41.748 515 282 9 1 500 14 525 2.63e-127 380
Msa0693010 MtrunA17_Chr1g0179541 41.517 501 263 7 12 500 30 512 6.11e-122 367
Msa0693010 MtrunA17_Chr5g0400361 38.780 410 237 8 6 412 73 471 4.73e-89 283
Msa0693010 MtrunA17_Chr6g0463101 35.787 489 265 12 9 486 104 554 4.68e-84 270
Msa0693010 MtrunA17_Chr1g0202291 35.174 489 268 12 9 486 102 552 1.54e-83 269
Msa0693010 MtrunA17_Chr1g0188101 31.600 500 285 11 11 485 90 557 5.75e-71 236
Msa0693010 MtrunA17_Chr1g0206791 32.383 491 294 11 11 488 17 482 2.11e-69 230
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693010 AT5G56350.1 89.271 494 53 0 7 500 5 498 0.0 908
Msa0693010 AT4G26390.1 83.603 494 81 0 7 500 4 497 0.0 867
Msa0693010 AT5G08570.1 79.022 491 103 0 10 500 20 510 0.0 821
Msa0693010 AT5G08570.2 79.022 491 103 0 10 500 20 510 0.0 821
Msa0693010 AT5G08570.3 79.022 491 103 0 10 500 20 510 0.0 821
Msa0693010 AT5G63680.3 78.702 493 105 0 8 500 18 510 0.0 818
Msa0693010 AT5G63680.1 78.702 493 105 0 8 500 18 510 0.0 818
Msa0693010 AT5G63680.2 78.702 493 105 0 8 500 18 510 0.0 818
Msa0693010 AT3G04050.1 73.790 496 126 3 9 500 15 510 0.0 758
Msa0693010 AT3G25960.1 72.470 494 123 4 9 500 15 497 0.0 728
Msa0693010 AT3G55650.1 71.169 496 139 3 9 500 15 510 0.0 726
Msa0693010 AT3G55810.1 67.944 496 137 4 9 500 15 492 0.0 673
Msa0693010 AT2G36580.1 43.487 499 270 7 12 500 30 526 3.03e-130 389
Msa0693010 AT3G52990.1 43.287 499 271 7 12 500 30 526 2.82e-129 386
Msa0693010 AT3G52990.2 42.526 475 261 7 36 500 1 473 3.76e-120 361
Msa0693010 AT5G52920.1 36.179 492 272 13 11 495 111 567 1.42e-84 272
Msa0693010 AT1G32440.1 39.320 412 229 10 7 412 96 492 4.21e-81 263
Msa0693010 AT3G22960.1 31.717 495 289 12 11 485 118 583 3.25e-70 235
Msa0693010 AT3G49160.3 31.618 272 159 9 73 322 325 591 1.55e-21 98.6
Msa0693010 AT3G49160.1 31.618 272 159 9 73 322 413 679 1.75e-21 98.6

Find 136 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAACTCTGATGCATTTA+TGG 0.128456 4_4:-61823237 Msa0693010:CDS
AAGCGGTTTCAGTTGTTTAT+TGG 0.237023 4_4:-61825223 Msa0693010:five_prime_UTR
CAAAGTTTGCAACCCCTTCT+TGG 0.251729 4_4:+61823270 None:intergenic
CGTGCAAACGATCTTAGTTT+TGG 0.261618 4_4:+61825107 None:intergenic
TCTCAACAATAACAATAATA+AGG 0.268598 4_4:+61822297 None:intergenic
GAGTGGTGTGGTGGTTCTTC+TGG 0.285238 4_4:+61825175 None:intergenic
AGGAGGGACTACTGCAAAAT+TGG 0.314986 4_4:-61822790 Msa0693010:CDS
GTACAAGTTCGAAAACTTCT+AGG 0.320879 4_4:-61823620 Msa0693010:CDS
TGTGAGAACTCTGCTGTTCT+AGG 0.329692 4_4:-61823788 Msa0693010:CDS
GCAGAAGCAGCACTTAATAT+TGG 0.330688 4_4:+61822639 None:intergenic
TGATGTTGCGAATGCAGTTC+TGG 0.344149 4_4:-61823051 Msa0693010:CDS
GAAAGGGACTCTGCGTTAAC+GGG 0.361244 4_4:-61822554 Msa0693010:CDS
CTTATCGTGTGACAAAGAAT+TGG 0.361638 4_4:-61823828 Msa0693010:CDS
TTGTATTCTCATCACCCTTT+AGG 0.370256 4_4:+61823936 None:intergenic
CGATAAGACTGTAAATGATA+TGG 0.371207 4_4:+61823844 None:intergenic
AGCTTCAGCTCTGGTTGGCC+GGG 0.390347 4_4:+61823076 None:intergenic
TAGCTTCAGCTCTGGTTGGC+CGG 0.391145 4_4:+61823075 None:intergenic
CAAGGAAGATATCATGGCTT+GGG 0.397205 4_4:-61823702 Msa0693010:CDS
CCTTTCCCTTGGCACATTGA+AGG 0.403085 4_4:+61822571 None:intergenic
GCTGAGAGCACCATTGACTA+TGG 0.403578 4_4:-61822936 Msa0693010:CDS
GGAAAGGGACTCTGCGTTAA+CGG 0.404260 4_4:-61822555 Msa0693010:CDS
CGCCGTCATGCTCGATACTA+AGG 0.406356 4_4:-61824929 Msa0693010:intron
TCAACTGACTATAGCCTAAA+GGG 0.420476 4_4:-61823950 Msa0693010:CDS
CATGACGGCGCAGAGAATTC+CGG 0.420747 4_4:+61824942 None:intergenic
CATCCAACGTACACTGTAGA+TGG 0.425221 4_4:+61822386 None:intergenic
TTGTTTCAGTTGGATAGGTT+TGG 0.435015 4_4:+61823991 None:intergenic
TGCTAGAGCAGCTCTCATAT+TGG 0.437951 4_4:-61822823 Msa0693010:CDS
AGATGTATTCAAAAGGATAA+TGG 0.438677 4_4:-61822913 Msa0693010:CDS
GGAACGACAACAGAAAGAAT+TGG 0.441249 4_4:+61822744 None:intergenic
GCACGCTGGGACCCGCATCT+AGG 0.445382 4_4:-61825089 Msa0693010:CDS
TTATCGTGTGACAAAGAATT+GGG 0.446712 4_4:-61823827 Msa0693010:CDS
ACAGAAAGAATTGGCGTGCC+TGG 0.449963 4_4:+61822753 None:intergenic
TATCATGATTGAGAAGTGTA+TGG 0.450523 4_4:-61822150 Msa0693010:three_prime_UTR
GCGCTTTCATTTGTTCGAAA+AGG 0.450686 4_4:-61823653 Msa0693010:CDS
CAAAATTGGTGGCTAAATAC+AGG 0.450918 4_4:-61822776 Msa0693010:CDS
TTTCATTACCTTGTTTCAGT+TGG 0.451778 4_4:+61823981 None:intergenic
TTACCTTGTTTCAGTTGGAT+AGG 0.452533 4_4:+61823986 None:intergenic
TGTTCGAAAAGGTTCTGATC+TGG 0.452582 4_4:-61823642 Msa0693010:CDS
TCCAATGGGCTCATGGGTAC+TGG 0.457116 4_4:+61822882 None:intergenic
TAACGACTGATACCTTTGAT+TGG 0.457143 4_4:-61822716 Msa0693010:CDS
AGAAATCCAGTTCGAATCTC+AGG 0.458723 4_4:+61824022 None:intergenic
ACTAAGATCGTTTGCACGCT+GGG 0.459837 4_4:-61825102 Msa0693010:CDS
GAGAGCTGCTCTAGCAGAGT+TGG 0.462449 4_4:+61822830 None:intergenic
CTTTCCCTTGGCACATTGAA+GGG 0.463400 4_4:+61822572 None:intergenic
ATTGTACGAACAGCAAGTTC+TGG 0.463793 4_4:+61822978 None:intergenic
GAATACATCTCCATAGTCAA+TGG 0.466000 4_4:+61822926 None:intergenic
TAACAATAATAAGGTAATAG+TGG 0.466373 4_4:+61822306 None:intergenic
AACGCAGAGTCCCTTTCCCT+TGG 0.468309 4_4:+61822560 None:intergenic
TTGGCTCATGATGTGAAGCC+CGG 0.476499 4_4:-61823893 Msa0693010:CDS
TAGACTCTCCAATGGGCTCA+TGG 0.478114 4_4:+61822875 None:intergenic
CAATTGGAATTTCCATTCCA+AGG 0.480988 4_4:+61823201 None:intergenic
GCTAGATTCAACTTCTCTCA+TGG 0.485672 4_4:-61825021 Msa0693010:CDS
GTGTGACAAAGAATTGGGTT+TGG 0.488491 4_4:-61823822 Msa0693010:CDS
GTGCAATATCCAAGGAAAAC+CGG 0.489545 4_4:-61823141 Msa0693010:CDS
AGAAAGAATGTTAATCTGCC+TGG 0.492316 4_4:-61823761 Msa0693010:CDS
AATATCAAGCTATGTCTAGC+AGG 0.493341 4_4:+61822675 None:intergenic
TAGGGGCCTGAGATTCGAAC+TGG 0.499972 4_4:-61824028 Msa0693010:CDS
CTTCAATGTGCCAAGGGAAA+GGG 0.500302 4_4:-61822570 Msa0693010:CDS
TTCAACTGACTATAGCCTAA+AGG 0.500418 4_4:-61823951 Msa0693010:CDS
ATCTGTGTCGCAGTAACGAC+CGG 0.500826 4_4:+61823122 None:intergenic
CGTTAACGGGGATTCTGTTG+TGG 0.503390 4_4:-61822541 Msa0693010:CDS
GCTTCAGCTCTGGTTGGCCG+GGG 0.507929 4_4:+61823077 None:intergenic
GAAAGACAAGGAAGATATCA+TGG 0.513280 4_4:-61823708 Msa0693010:CDS
TGGTTCTCATGAGTATCATC+AGG 0.514740 4_4:-61825001 Msa0693010:CDS
CCTTCAATGTGCCAAGGGAA+AGG 0.523286 4_4:-61822571 Msa0693010:CDS
AGTGTCATACTCTGCGCAGA+TGG 0.524172 4_4:-61823869 Msa0693010:CDS
ACAGACTGTGTCATGCTTAG+TGG 0.525623 4_4:-61823023 Msa0693010:CDS
ACAAGGAAGATATCATGGCT+TGG 0.526189 4_4:-61823703 Msa0693010:CDS
TGCGCAGAGTATGACACTCC+CGG 0.530456 4_4:+61823874 None:intergenic
AAGGTATCAGTCGTTAGCTC+AGG 0.530961 4_4:+61822723 None:intergenic
CGCATCTAGGTCTATTCCCA+TGG 0.531643 4_4:-61825076 Msa0693010:CDS
CGTTACTGCGACACAGATGT+TGG 0.535059 4_4:-61823117 Msa0693010:CDS
ACTATGGAGATGTATTCAAA+AGG 0.538144 4_4:-61822920 Msa0693010:CDS
GGAAGATCCACTACGACTCC+AGG 0.538876 4_4:+61823743 None:intergenic
CTTGTCTTTCTCAGTCAAAG+TGG 0.540820 4_4:+61823721 None:intergenic
AACTAAGATCGTTTGCACGC+TGG 0.542989 4_4:-61825103 Msa0693010:CDS
CTTAGTGGTGAAACTGCTGC+TGG 0.547208 4_4:-61823008 Msa0693010:CDS
AACATCAGTAGCTTCAGCTC+TGG 0.547477 4_4:+61823067 None:intergenic
GGCAGGTTGAAAACCAAGAA+GGG 0.548016 4_4:-61823283 Msa0693010:intron
GAACATTCTTCTCATGTCAA+AGG 0.556045 4_4:-61823585 Msa0693010:intron
AGACTCTCCAATGGGCTCAT+GGG 0.558290 4_4:+61822876 None:intergenic
AGGGACTACTGCAAAATTGG+TGG 0.560616 4_4:-61822787 Msa0693010:CDS
CTCATATTGGTTCTAACTAG+AGG 0.560702 4_4:-61822810 Msa0693010:CDS
TTAATATTGGAATCAATCCT+CGG 0.562918 4_4:+61822652 None:intergenic
ACCAGTACCCATGAGCCCAT+TGG 0.569139 4_4:-61822883 Msa0693010:CDS
TTTGAGAATATCTATATAAG+CGG 0.569632 4_4:-61825240 Msa0693010:five_prime_UTR
TTGTCTTTCTCAGTCAAAGT+GGG 0.570627 4_4:+61823722 None:intergenic
TTTAATGGGAGATCATTTCA+CGG 0.575483 4_4:+61822476 None:intergenic
TGGCTCATGATGTGAAGCCC+GGG 0.576246 4_4:-61823892 Msa0693010:CDS
GGCACGTGGTGACCTTGGAA+TGG 0.579482 4_4:-61823213 Msa0693010:CDS
AAGAAGCTAGACTCTCCAAT+GGG 0.579536 4_4:+61822868 None:intergenic
TGATAATCTTAGAGCCGCCA+TGG 0.580668 4_4:-61824971 Msa0693010:CDS
TTGGTGGCTAAATACAGGCC+AGG 0.581932 4_4:-61822771 Msa0693010:CDS
TGGCAGGTTGAAAACCAAGA+AGG 0.582341 4_4:-61823284 Msa0693010:intron
ATATCAAGCTATGTCTAGCA+GGG 0.582962 4_4:+61822676 None:intergenic
AGAGCCGCCATGGAGAATAC+CGG 0.583837 4_4:-61824961 Msa0693010:CDS
TCAGTAGCTTCAGCTCTGGT+TGG 0.584103 4_4:+61823071 None:intergenic
TGTTGTGGTTCTGCATCGCG+TGG 0.586595 4_4:-61822526 Msa0693010:CDS
GATTCGAACTGGATTTCTCA+AGG 0.588567 4_4:-61824017 Msa0693010:CDS
ATTTGCCCTTCAATGTGCCA+AGG 0.591498 4_4:-61822577 Msa0693010:CDS
TAAATGCATCAGAGTTTGCA+AGG 0.592927 4_4:+61823240 None:intergenic
ATGGTGGCACGTGGTGACCT+TGG 0.597261 4_4:-61823218 Msa0693010:CDS
ATTTATAAGTGCAATATCCA+AGG 0.598187 4_4:-61823149 Msa0693010:CDS
GAGAATTCCGGTATTCTCCA+TGG 0.598680 4_4:+61824954 None:intergenic
AGAACTTGCTGTTCGTACAA+TGG 0.602563 4_4:-61822976 Msa0693010:CDS
AGACATAGCTTGATATTCCG+AGG 0.602907 4_4:-61822669 Msa0693010:CDS
ATATTGGTTCTAACTAGAGG+AGG 0.607238 4_4:-61822807 Msa0693010:CDS
CACTTTGACTGAGAAAGACA+AGG 0.607462 4_4:-61823720 Msa0693010:CDS
TGAGAAGAATGTTCTTAGCA+TGG 0.609210 4_4:+61823594 None:intergenic
TTTGCCCTTCAATGTGCCAA+GGG 0.609763 4_4:-61822576 Msa0693010:CDS
GTTGCGAATGCAGTTCTGGA+TGG 0.610844 4_4:-61823047 Msa0693010:CDS
GCGCAGAGTATGACACTCCC+GGG 0.615359 4_4:+61823875 None:intergenic
ATCACTGCATGACCAATCAA+AGG 0.619997 4_4:+61822704 None:intergenic
GAAGAAGCTAGACTCTCCAA+TGG 0.622268 4_4:+61822867 None:intergenic
TAATCTGCCTGGAGTCGTAG+TGG 0.623976 4_4:-61823750 Msa0693010:CDS
ATGGGAATAGACCTAGATGC+GGG 0.628393 4_4:+61825078 None:intergenic
TATTGGTTCTAACTAGAGGA+GGG 0.629589 4_4:-61822806 Msa0693010:CDS
AAACCTATCCAACTGAAACA+AGG 0.639584 4_4:-61823989 Msa0693010:CDS
AAGGAAGATATCATGGCTTG+GGG 0.639801 4_4:-61823701 Msa0693010:CDS
TCATCTCATCGATCTAAACA+TGG 0.643002 4_4:-61825154 Msa0693010:exon
CGATGAGATGAGTGGTGTGG+TGG 0.644965 4_4:+61825166 None:intergenic
AGTCAATGATCAAATCTCCC+CGG 0.646746 4_4:-61823094 Msa0693010:CDS
AAAGGGACTCTGCGTTAACG+GGG 0.647503 4_4:-61822553 Msa0693010:CDS
GTTGTGGTTCTGCATCGCGT+GGG 0.653541 4_4:-61822525 Msa0693010:CDS
GCAGGTTGAAAACCAAGAAG+GGG 0.675723 4_4:-61823282 Msa0693010:intron
TCAAACAAGCAAGTCTCACG+CGG 0.683267 4_4:+61825258 None:intergenic
TACCTTAGTATCGAGCATGA+CGG 0.683613 4_4:+61824927 None:intergenic
CATGGGAATAGACCTAGATG+CGG 0.689751 4_4:+61825077 None:intergenic
GATCGATGAGATGAGTGGTG+TGG 0.702627 4_4:+61825163 None:intergenic
ATACCATCTACAGTGTACGT+TGG 0.704657 4_4:-61822389 Msa0693010:three_prime_UTR
AAACTCTGATGCATTTATGG+TGG 0.705208 4_4:-61823234 Msa0693010:CDS
TATCAAGCTATGTCTAGCAG+GGG 0.708675 4_4:+61822677 None:intergenic
GTTTAGATCGATGAGATGAG+TGG 0.731788 4_4:+61825158 None:intergenic
GATGCATTTATGGTGGCACG+TGG 0.742236 4_4:-61823227 Msa0693010:CDS
AATTCCGGTATTCTCCATGG+CGG 0.770920 4_4:+61824957 None:intergenic
GAACAGCAGAGTTCTCACAG+CGG 0.862341 4_4:+61823792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAATCACTTTTTAAT+GGG + chr4_4:61824981-61825000 None:intergenic 10.0%
!!! CTGAAAATAATTTTTGTATT+TGG - chr4_4:61822910-61822929 Msa0693010:CDS 15.0%
!! TACTTGATTCTTAATATTTA+TGG - chr4_4:61823238-61823257 Msa0693010:CDS 15.0%
!!! GATAAAAAATCACTTTTTAA+TGG + chr4_4:61824982-61825001 None:intergenic 15.0%
!!! AGATTATATGTATGAATTTT+TGG - chr4_4:61825193-61825212 Msa0693010:five_prime_UTR 15.0%
!!! TGTTTTTGATTATTATTTTG+CGG - chr4_4:61825240-61825259 Msa0693010:five_prime_UTR 15.0%
!!! CTACTTTTGTTGAATAATTT+TGG - chr4_4:61822158-61822177 Msa0693010:three_prime_UTR 20.0%
!! TTTGAGAATATCTATATAAG+CGG - chr4_4:61822200-61822219 Msa0693010:three_prime_UTR 20.0%
!! AATTCTTATCCATACATATA+AGG + chr4_4:61822673-61822692 None:intergenic 20.0%
!! TAAAAGAACTATAGTCTATT+TGG + chr4_4:61823170-61823189 None:intergenic 20.0%
!! ATTAAGAATCAAGTAAAAAC+CGG + chr4_4:61823233-61823252 None:intergenic 20.0%
!! TAACAATAATAAGGTAATAG+TGG + chr4_4:61825137-61825156 None:intergenic 20.0%
!! TCTCAACAATAACAATAATA+AGG + chr4_4:61825146-61825165 None:intergenic 20.0%
!!! TGATTTTGACCTTATATGTA+TGG - chr4_4:61822661-61822680 Msa0693010:CDS 25.0%
! TGTTAGATTAGGTTATGTTT+GGG - chr4_4:61822747-61822766 Msa0693010:CDS 25.0%
!! TTTTATAAGATGTCTTAGAG+AGG - chr4_4:61822874-61822893 Msa0693010:CDS 25.0%
!!! TATGGTTTAGAACCTTATTT+TGG - chr4_4:61823256-61823275 Msa0693010:CDS 25.0%
! TTACAATACTCACCAAAATA+AGG + chr4_4:61823271-61823290 None:intergenic 25.0%
!!! TATTAAGAGAGTTTTAGTTG+CGG + chr4_4:61823316-61823335 None:intergenic 25.0%
!! GCAATCATGTCAATTTTATT+GGG + chr4_4:61823769-61823788 None:intergenic 25.0%
! AAGAGATAGAAAAAATCAGT+AGG + chr4_4:61824074-61824093 None:intergenic 25.0%
! ATTTATAAGTGCAATATCCA+AGG - chr4_4:61824291-61824310 Msa0693010:intron 25.0%
! AGATGTATTCAAAAGGATAA+TGG - chr4_4:61824527-61824546 Msa0693010:intron 25.0%
! TTAATATTGGAATCAATCCT+CGG + chr4_4:61824791-61824810 None:intergenic 25.0%
!!! GTGATTTTTTATCTGCTTTT+TGG - chr4_4:61824989-61825008 Msa0693010:CDS 25.0%
!!! TTTGGCAAAGTATTTTATGA+TGG - chr4_4:61825007-61825026 Msa0693010:CDS 25.0%
!! ACATCAATTGATGCTTTTAT+TGG - chr4_4:61825081-61825100 Msa0693010:CDS 25.0%
!! CATCAATTGATGCTTTTATT+GGG - chr4_4:61825082-61825101 Msa0693010:CDS 25.0%
!! ATCAATTGATGCTTTTATTG+GGG - chr4_4:61825083-61825102 Msa0693010:CDS 25.0%
! ATGCAAATACGTGTAAAAAA+GGG + chr4_4:61825113-61825132 None:intergenic 25.0%
! TATGCAAATACGTGTAAAAA+AGG + chr4_4:61825114-61825133 None:intergenic 25.0%
!!! TTTTTGGTACTCAAAAATGT+AGG - chr4_4:61825209-61825228 Msa0693010:five_prime_UTR 25.0%
ACAGTTCAAACATGTATTGA+CGG + chr4_4:61822730-61822749 None:intergenic 30.0%
CATGTTTGAACTGTTAGATT+AGG - chr4_4:61822736-61822755 Msa0693010:CDS 30.0%
CTGTTAGATTAGGTTATGTT+TGG - chr4_4:61822746-61822765 Msa0693010:CDS 30.0%
TGTTTCATGCAAGTTATTAG+CGG - chr4_4:61822850-61822869 Msa0693010:CDS 30.0%
!! ATAAAAGCATCTTCAATGTC+CGG - chr4_4:61823211-61823230 Msa0693010:CDS 30.0%
! TTTCATTACCTTGTTTCAGT+TGG + chr4_4:61823462-61823481 None:intergenic 30.0%
CGATAAGACTGTAAATGATA+TGG + chr4_4:61823599-61823618 None:intergenic 30.0%
TTATCGTGTGACAAAGAATT+GGG - chr4_4:61823613-61823632 Msa0693010:CDS 30.0%
! CGCAATCATGTCAATTTTAT+TGG + chr4_4:61823770-61823789 None:intergenic 30.0%
! GCGAGAAATATTTTCTCAAT+TGG + chr4_4:61824258-61824277 None:intergenic 30.0%
ACTATGGAGATGTATTCAAA+AGG - chr4_4:61824520-61824539 Msa0693010:intron 30.0%
!! CAAGATTTTGATGATTGATG+CGG + chr4_4:61824943-61824962 None:intergenic 30.0%
TTTAATGGGAGATCATTTCA+CGG + chr4_4:61824967-61824986 None:intergenic 30.0%
! TATCATGATTGAGAAGTGTA+TGG - chr4_4:61825290-61825309 Msa0693010:five_prime_UTR 30.0%
AAGCGGTTTCAGTTGTTTAT+TGG - chr4_4:61822217-61822236 Msa0693010:three_prime_UTR 35.0%
TCATCTCATCGATCTAAACA+TGG - chr4_4:61822286-61822305 Msa0693010:three_prime_UTR 35.0%
!! GTGCAAACGATCTTAGTTTT+GGG + chr4_4:61822335-61822354 None:intergenic 35.0%
AAGATGTCTTAGAGAGGTTA+TGG - chr4_4:61822880-61822899 Msa0693010:CDS 35.0%
! TTGGTGAGTATTGTAATTCG+AGG - chr4_4:61823275-61823294 Msa0693010:CDS 35.0%
! TGGTGAGTATTGTAATTCGA+GGG - chr4_4:61823276-61823295 Msa0693010:CDS 35.0%
ATGAAGCAACTTGAAAATGC+TGG + chr4_4:61823347-61823366 None:intergenic 35.0%
TTACATTGCTCATTGCTGTA+GGG - chr4_4:61823394-61823413 Msa0693010:intron 35.0%
TTGTTTCAGTTGGATAGGTT+TGG + chr4_4:61823452-61823471 None:intergenic 35.0%
AAACCTATCCAACTGAAACA+AGG - chr4_4:61823451-61823470 Msa0693010:intron 35.0%
! TTACCTTGTTTCAGTTGGAT+AGG + chr4_4:61823457-61823476 None:intergenic 35.0%
TTCAACTGACTATAGCCTAA+AGG - chr4_4:61823489-61823508 Msa0693010:intron 35.0%
TCAACTGACTATAGCCTAAA+GGG - chr4_4:61823490-61823509 Msa0693010:intron 35.0%
TTGTATTCTCATCACCCTTT+AGG + chr4_4:61823507-61823526 None:intergenic 35.0%
CTTATCGTGTGACAAAGAAT+TGG - chr4_4:61823612-61823631 Msa0693010:CDS 35.0%
AGAAAGAATGTTAATCTGCC+TGG - chr4_4:61823679-61823698 Msa0693010:CDS 35.0%
TTGTCTTTCTCAGTCAAAGT+GGG + chr4_4:61823721-61823740 None:intergenic 35.0%
GAAAGACAAGGAAGATATCA+TGG - chr4_4:61823732-61823751 Msa0693010:CDS 35.0%
GTACAAGTTCGAAAACTTCT+AGG - chr4_4:61823820-61823839 Msa0693010:CDS 35.0%
TGAGAAGAATGTTCTTAGCA+TGG + chr4_4:61823849-61823868 None:intergenic 35.0%
GAACATTCTTCTCATGTCAA+AGG - chr4_4:61823855-61823874 Msa0693010:CDS 35.0%
TCCACGTTAATGTGTGTTAT+TGG - chr4_4:61823996-61824015 Msa0693010:CDS 35.0%
TCCAATAACACACATTAACG+TGG + chr4_4:61824000-61824019 None:intergenic 35.0%
TAAATGCATCAGAGTTTGCA+AGG + chr4_4:61824203-61824222 None:intergenic 35.0%
TGCAAACTCTGATGCATTTA+TGG - chr4_4:61824203-61824222 Msa0693010:intron 35.0%
AAACTCTGATGCATTTATGG+TGG - chr4_4:61824206-61824225 Msa0693010:intron 35.0%
CAATTGGAATTTCCATTCCA+AGG + chr4_4:61824242-61824261 None:intergenic 35.0%
GAATACATCTCCATAGTCAA+TGG + chr4_4:61824517-61824536 None:intergenic 35.0%
!! CTCATATTGGTTCTAACTAG+AGG - chr4_4:61824630-61824649 Msa0693010:intron 35.0%
!! ATATTGGTTCTAACTAGAGG+AGG - chr4_4:61824633-61824652 Msa0693010:intron 35.0%
!! TATTGGTTCTAACTAGAGGA+GGG - chr4_4:61824634-61824653 Msa0693010:intron 35.0%
! CAAAATTGGTGGCTAAATAC+AGG - chr4_4:61824664-61824683 Msa0693010:intron 35.0%
TAACGACTGATACCTTTGAT+TGG - chr4_4:61824724-61824743 Msa0693010:intron 35.0%
ATATCAAGCTATGTCTAGCA+GGG + chr4_4:61824767-61824786 None:intergenic 35.0%
AATATCAAGCTATGTCTAGC+AGG + chr4_4:61824768-61824787 None:intergenic 35.0%
GTTTAGATCGATGAGATGAG+TGG + chr4_4:61822285-61822304 None:intergenic 40.0%
! CGTGCAAACGATCTTAGTTT+TGG + chr4_4:61822336-61822355 None:intergenic 40.0%
GCTAGATTCAACTTCTCTCA+TGG - chr4_4:61822419-61822438 Msa0693010:three_prime_UTR 40.0%
TGGTTCTCATGAGTATCATC+AGG - chr4_4:61822439-61822458 Msa0693010:three_prime_UTR 40.0%
! TACCTTAGTATCGAGCATGA+CGG + chr4_4:61822516-61822535 None:intergenic 40.0%
CTTACATTGCTCATTGCTGT+AGG - chr4_4:61823393-61823412 Msa0693010:intron 40.0%
TACATTGCTCATTGCTGTAG+GGG - chr4_4:61823395-61823414 Msa0693010:intron 40.0%
AGAAATCCAGTTCGAATCTC+AGG + chr4_4:61823421-61823440 None:intergenic 40.0%
GATTCGAACTGGATTTCTCA+AGG - chr4_4:61823423-61823442 Msa0693010:intron 40.0%
CTCCATGAGCTACAAAAAGT+TGG - chr4_4:61823528-61823547 Msa0693010:intron 40.0%
! AGCCAACTTTTTGTAGCTCA+TGG + chr4_4:61823533-61823552 None:intergenic 40.0%
GTGTGACAAAGAATTGGGTT+TGG - chr4_4:61823618-61823637 Msa0693010:CDS 40.0%
CTTGTCTTTCTCAGTCAAAG+TGG + chr4_4:61823722-61823741 None:intergenic 40.0%
CACTTTGACTGAGAAAGACA+AGG - chr4_4:61823720-61823739 Msa0693010:CDS 40.0%
ACAAGGAAGATATCATGGCT+TGG - chr4_4:61823737-61823756 Msa0693010:CDS 40.0%
CAAGGAAGATATCATGGCTT+GGG - chr4_4:61823738-61823757 Msa0693010:CDS 40.0%
AAGGAAGATATCATGGCTTG+GGG - chr4_4:61823739-61823758 Msa0693010:CDS 40.0%
GCGCTTTCATTTGTTCGAAA+AGG - chr4_4:61823787-61823806 Msa0693010:CDS 40.0%
! TGTTCGAAAAGGTTCTGATC+TGG - chr4_4:61823798-61823817 Msa0693010:CDS 40.0%
CATACATTTGCAAGTTGCAG+AGG + chr4_4:61824136-61824155 None:intergenic 40.0%
CTGCAACTTGCAAATGTATG+TGG - chr4_4:61824136-61824155 Msa0693010:intron 40.0%
AACTTGCAAATGTATGTGGC+AGG - chr4_4:61824140-61824159 Msa0693010:intron 40.0%
GTGCAATATCCAAGGAAAAC+CGG - chr4_4:61824299-61824318 Msa0693010:intron 40.0%
AGTCAATGATCAAATCTCCC+CGG - chr4_4:61824346-61824365 Msa0693010:intron 40.0%
ATTGTACGAACAGCAAGTTC+TGG + chr4_4:61824465-61824484 None:intergenic 40.0%
!! AGAACTTGCTGTTCGTACAA+TGG - chr4_4:61824464-61824483 Msa0693010:intron 40.0%
AAGAAGCTAGACTCTCCAAT+GGG + chr4_4:61824575-61824594 None:intergenic 40.0%
GGAACGACAACAGAAAGAAT+TGG + chr4_4:61824699-61824718 None:intergenic 40.0%
ATCACTGCATGACCAATCAA+AGG + chr4_4:61824739-61824758 None:intergenic 40.0%
TATCAAGCTATGTCTAGCAG+GGG + chr4_4:61824766-61824785 None:intergenic 40.0%
AGACATAGCTTGATATTCCG+AGG - chr4_4:61824771-61824790 Msa0693010:intron 40.0%
GCAGAAGCAGCACTTAATAT+TGG + chr4_4:61824804-61824823 None:intergenic 40.0%
ATACCATCTACAGTGTACGT+TGG - chr4_4:61825051-61825070 Msa0693010:CDS 40.0%
TCAAACAAGCAAGTCTCACG+CGG + chr4_4:61822185-61822204 None:intergenic 45.0%
AACTAAGATCGTTTGCACGC+TGG - chr4_4:61822337-61822356 Msa0693010:three_prime_UTR 45.0%
ACTAAGATCGTTTGCACGCT+GGG - chr4_4:61822338-61822357 Msa0693010:three_prime_UTR 45.0%
ATGGGAATAGACCTAGATGC+GGG + chr4_4:61822365-61822384 None:intergenic 45.0%
CATGGGAATAGACCTAGATG+CGG + chr4_4:61822366-61822385 None:intergenic 45.0%
! CGCAAAAGCTTTTCGACCAT+GGG + chr4_4:61822383-61822402 None:intergenic 45.0%
! TCGCAAAAGCTTTTCGACCA+TGG + chr4_4:61822384-61822403 None:intergenic 45.0%
! TCGAAAAGCTTTTGCGAGCA+GGG - chr4_4:61822387-61822406 Msa0693010:three_prime_UTR 45.0%
TGATAATCTTAGAGCCGCCA+TGG - chr4_4:61822469-61822488 Msa0693010:exon 45.0%
AATTCCGGTATTCTCCATGG+CGG + chr4_4:61822486-61822505 None:intergenic 45.0%
GAGAATTCCGGTATTCTCCA+TGG + chr4_4:61822489-61822508 None:intergenic 45.0%
TGTGAGAACTCTGCTGTTCT+AGG - chr4_4:61823652-61823671 Msa0693010:CDS 45.0%
! TGGCAGGTTGAAAACCAAGA+AGG - chr4_4:61824156-61824175 Msa0693010:intron 45.0%
! GGCAGGTTGAAAACCAAGAA+GGG - chr4_4:61824157-61824176 Msa0693010:intron 45.0%
! GCAGGTTGAAAACCAAGAAG+GGG - chr4_4:61824158-61824177 Msa0693010:intron 45.0%
CAAAGTTTGCAACCCCTTCT+TGG + chr4_4:61824173-61824192 None:intergenic 45.0%
AACATCAGTAGCTTCAGCTC+TGG + chr4_4:61824376-61824395 None:intergenic 45.0%
TGATGTTGCGAATGCAGTTC+TGG - chr4_4:61824389-61824408 Msa0693010:intron 45.0%
ACAGACTGTGTCATGCTTAG+TGG - chr4_4:61824417-61824436 Msa0693010:intron 45.0%
GAAGAAGCTAGACTCTCCAA+TGG + chr4_4:61824576-61824595 None:intergenic 45.0%
TGCTAGAGCAGCTCTCATAT+TGG - chr4_4:61824617-61824636 Msa0693010:intron 45.0%
AGGAGGGACTACTGCAAAAT+TGG - chr4_4:61824650-61824669 Msa0693010:intron 45.0%
AGGGACTACTGCAAAATTGG+TGG - chr4_4:61824653-61824672 Msa0693010:intron 45.0%
! AAGGTATCAGTCGTTAGCTC+AGG + chr4_4:61824720-61824739 None:intergenic 45.0%
ATTTGCCCTTCAATGTGCCA+AGG - chr4_4:61824863-61824882 Msa0693010:intron 45.0%
TTTGCCCTTCAATGTGCCAA+GGG - chr4_4:61824864-61824883 Msa0693010:intron 45.0%
CTTTCCCTTGGCACATTGAA+GGG + chr4_4:61824871-61824890 None:intergenic 45.0%
CTTCAATGTGCCAAGGGAAA+GGG - chr4_4:61824870-61824889 Msa0693010:intron 45.0%
CATCCAACGTACACTGTAGA+TGG + chr4_4:61825057-61825076 None:intergenic 45.0%
!! TCATAATAAATAAAAAAAAA+AGG + chr4_4:61822544-61822563 None:intergenic 5.0%
!!! ATTTTTTATTATTTTTTTCA+TGG - chr4_4:61823893-61823912 Msa0693010:CDS 5.0%
GATCGATGAGATGAGTGGTG+TGG + chr4_4:61822280-61822299 None:intergenic 50.0%
CGCATCTAGGTCTATTCCCA+TGG - chr4_4:61822364-61822383 Msa0693010:three_prime_UTR 50.0%
! GTCGAAAAGCTTTTGCGAGC+AGG - chr4_4:61822386-61822405 Msa0693010:three_prime_UTR 50.0%
TTGGCTCATGATGTGAAGCC+CGG - chr4_4:61823547-61823566 Msa0693010:intron 50.0%
AGTGTCATACTCTGCGCAGA+TGG - chr4_4:61823571-61823590 Msa0693010:intron 50.0%
GAACAGCAGAGTTCTCACAG+CGG + chr4_4:61823651-61823670 None:intergenic 50.0%
TAATCTGCCTGGAGTCGTAG+TGG - chr4_4:61823690-61823709 Msa0693010:CDS 50.0%
GATGCATTTATGGTGGCACG+TGG - chr4_4:61824213-61824232 Msa0693010:intron 50.0%
!! CAGTAACGACCGGTTTTCCT+TGG + chr4_4:61824311-61824330 None:intergenic 50.0%
ATCTGTGTCGCAGTAACGAC+CGG + chr4_4:61824321-61824340 None:intergenic 50.0%
CGTTACTGCGACACAGATGT+TGG - chr4_4:61824323-61824342 Msa0693010:intron 50.0%
! TCAGTAGCTTCAGCTCTGGT+TGG + chr4_4:61824372-61824391 None:intergenic 50.0%
!! GTTGCGAATGCAGTTCTGGA+TGG - chr4_4:61824393-61824412 Msa0693010:intron 50.0%
CTTAGTGGTGAAACTGCTGC+TGG - chr4_4:61824432-61824451 Msa0693010:intron 50.0%
!! GCTGAGAGCACCATTGACTA+TGG - chr4_4:61824504-61824523 Msa0693010:intron 50.0%
! AGACTCTCCAATGGGCTCAT+GGG + chr4_4:61824567-61824586 None:intergenic 50.0%
! TAGACTCTCCAATGGGCTCA+TGG + chr4_4:61824568-61824587 None:intergenic 50.0%
! TTGGTGGCTAAATACAGGCC+AGG - chr4_4:61824669-61824688 Msa0693010:intron 50.0%
ACAGAAAGAATTGGCGTGCC+TGG + chr4_4:61824690-61824709 None:intergenic 50.0%
CCTTTCCCTTGGCACATTGA+AGG + chr4_4:61824872-61824891 None:intergenic 50.0%
CCTTCAATGTGCCAAGGGAA+AGG - chr4_4:61824869-61824888 Msa0693010:intron 50.0%
GGAAAGGGACTCTGCGTTAA+CGG - chr4_4:61824885-61824904 Msa0693010:intron 50.0%
GAAAGGGACTCTGCGTTAAC+GGG - chr4_4:61824886-61824905 Msa0693010:intron 50.0%
AAAGGGACTCTGCGTTAACG+GGG - chr4_4:61824887-61824906 Msa0693010:intron 50.0%
CGTTAACGGGGATTCTGTTG+TGG - chr4_4:61824899-61824918 Msa0693010:intron 50.0%
GAGTGGTGTGGTGGTTCTTC+TGG + chr4_4:61822268-61822287 None:intergenic 55.0%
CGATGAGATGAGTGGTGTGG+TGG + chr4_4:61822277-61822296 None:intergenic 55.0%
AGAGCCGCCATGGAGAATAC+CGG - chr4_4:61822479-61822498 Msa0693010:exon 55.0%
CATGACGGCGCAGAGAATTC+CGG + chr4_4:61822501-61822520 None:intergenic 55.0%
CGCCGTCATGCTCGATACTA+AGG - chr4_4:61822511-61822530 Msa0693010:CDS 55.0%
TAGGGGCCTGAGATTCGAAC+TGG - chr4_4:61823412-61823431 Msa0693010:intron 55.0%
TGGCTCATGATGTGAAGCCC+GGG - chr4_4:61823548-61823567 Msa0693010:intron 55.0%
TGCGCAGAGTATGACACTCC+CGG + chr4_4:61823569-61823588 None:intergenic 55.0%
GGAAGATCCACTACGACTCC+AGG + chr4_4:61823700-61823719 None:intergenic 55.0%
! TAGCTTCAGCTCTGGTTGGC+CGG + chr4_4:61824368-61824387 None:intergenic 55.0%
ACCAGTACCCATGAGCCCAT+TGG - chr4_4:61824557-61824576 Msa0693010:intron 55.0%
! TCCAATGGGCTCATGGGTAC+TGG + chr4_4:61824561-61824580 None:intergenic 55.0%
GAGAGCTGCTCTAGCAGAGT+TGG + chr4_4:61824613-61824632 None:intergenic 55.0%
AACGCAGAGTCCCTTTCCCT+TGG + chr4_4:61824883-61824902 None:intergenic 55.0%
! TGTTGTGGTTCTGCATCGCG+TGG - chr4_4:61824914-61824933 Msa0693010:intron 55.0%
! GTTGTGGTTCTGCATCGCGT+GGG - chr4_4:61824915-61824934 Msa0693010:intron 55.0%
GCGCAGAGTATGACACTCCC+GGG + chr4_4:61823568-61823587 None:intergenic 60.0%
ATGGTGGCACGTGGTGACCT+TGG - chr4_4:61824222-61824241 Msa0693010:intron 60.0%
GGCACGTGGTGACCTTGGAA+TGG - chr4_4:61824227-61824246 Msa0693010:intron 60.0%
! AGCTTCAGCTCTGGTTGGCC+GGG + chr4_4:61824367-61824386 None:intergenic 60.0%
! GCTTCAGCTCTGGTTGGCCG+GGG + chr4_4:61824366-61824385 None:intergenic 65.0%
GCACGCTGGGACCCGCATCT+AGG - chr4_4:61822351-61822370 Msa0693010:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61822145 61825317 61822145 ID=Msa0693010;Name=Msa0693010
chr4_4 mRNA 61822145 61825317 61822145 ID=Msa0693010-mRNA-1;Parent=Msa0693010;Name=Msa0693010-mRNA-1;_AED=0.25;_eAED=0.25;_QI=160|1|1|1|1|1|3|343|500
chr4_4 exon 61822145 61823300 61822145 ID=Msa0693010-mRNA-1:exon:17227;Parent=Msa0693010-mRNA-1
chr4_4 exon 61823586 61824047 61823586 ID=Msa0693010-mRNA-1:exon:17226;Parent=Msa0693010-mRNA-1
chr4_4 exon 61824930 61825317 61824930 ID=Msa0693010-mRNA-1:exon:17225;Parent=Msa0693010-mRNA-1
chr4_4 five_prime_UTR 61825158 61825317 61825158 ID=Msa0693010-mRNA-1:five_prime_utr;Parent=Msa0693010-mRNA-1
chr4_4 CDS 61824930 61825157 61824930 ID=Msa0693010-mRNA-1:cds;Parent=Msa0693010-mRNA-1
chr4_4 CDS 61823586 61824047 61823586 ID=Msa0693010-mRNA-1:cds;Parent=Msa0693010-mRNA-1
chr4_4 CDS 61822488 61823300 61822488 ID=Msa0693010-mRNA-1:cds;Parent=Msa0693010-mRNA-1
chr4_4 three_prime_UTR 61822145 61822487 61822145 ID=Msa0693010-mRNA-1:three_prime_utr;Parent=Msa0693010-mRNA-1
Gene Sequence

>Msa0693010

ATGGCGACGATTGTAGCAGAGAAGAAGCCCAAAACTAAGATCGTTTGCACGCTGGGACCCGCATCTAGGTCTATTCCCATGGTCGAAAAGCTTTTGCGAGCAGGGATGAACGTTGCTAGATTCAACTTCTCTCATGGTTCTCATGAGTATCATCAGGAAACTCTTGATAATCTTAGAGCCGCCATGGAGAATACCGGAATTCTCTGCGCCGTCATGCTCGATACTAAGGGGCCTGAGATTCGAACTGGATTTCTCAAGGACGCCAAACCTATCCAACTGAAACAAGGTAATGAAATAACTATTTCAACTGACTATAGCCTAAAGGGTGATGAGAATACAATCTCCATGAGCTACAAAAAGTTGGCTCATGATGTGAAGCCCGGGAGTGTCATACTCTGCGCAGATGGAACCATATCATTTACAGTCTTATCGTGTGACAAAGAATTGGGTTTGGTTCAAGTCCGCTGTGAGAACTCTGCTGTTCTAGGCGAGAGAAAGAATGTTAATCTGCCTGGAGTCGTAGTGGATCTTCCCACTTTGACTGAGAAAGACAAGGAAGATATCATGGCTTGGGGAGTTCCCAATAAAATTGACATGATTGCGCTTTCATTTGTTCGAAAAGGTTCTGATCTGGTACAAGTTCGAAAACTTCTAGGACACCATGCTAAGAACATTCTTCTCATGTCAAAGGTTGAAAACCAAGAAGGGGTTGCAAACTTTGATGATATCCTTGCAAACTCTGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATTGAGAAAATATTTCTCGCACAGAAAGTGATGATTTATAAGTGCAATATCCAAGGAAAACCGGTCGTTACTGCGACACAGATGTTGGAGTCAATGATCAAATCTCCCCGGCCAACCAGAGCTGAAGCTACTGATGTTGCGAATGCAGTTCTGGATGGAACAGACTGTGTCATGCTTAGTGGTGAAACTGCTGCTGGAGCTTATCCAGAACTTGCTGTTCGTACAATGGCTAAAATATGTGTTGAAGCTGAGAGCACCATTGACTATGGAGATGTATTCAAAAGGATAATGGAGCACTCACCAGTACCCATGAGCCCATTGGAGAGTCTAGCTTCTTCTGCTGTTAGAACTGCCAACTCTGCTAGAGCAGCTCTCATATTGGTTCTAACTAGAGGAGGGACTACTGCAAAATTGGTGGCTAAATACAGGCCAGGCACGCCAATTCTTTCTGTTGTCGTTCCTGAGCTAACGACTGATACCTTTGATTGGTCATGCAGTGATGAGTCCCCTGCTAGACATAGCTTGATATTCCGAGGATTGATTCCAATATTAAGTGCTGCTTCTGCTAGAGCTTCTCATGCAGAAACAACAGAAGATGCAATAGAATTTGCCCTTCAATGTGCCAAGGGAAAGGGACTCTGCGTTAACGGGGATTCTGTTGTGGTTCTGCATCGCGTGGGTACCGCATCAATCATCAAAATCTTGACCGTGAAATGA

Protein sequence

>Msa0693010

MATIVAEKKPKTKIVCTLGPASRSIPMVEKLLRAGMNVARFNFSHGSHEYHQETLDNLRAAMENTGILCAVMLDTKGPEIRTGFLKDAKPIQLKQGNEITISTDYSLKGDENTISMSYKKLAHDVKPGSVILCADGTISFTVLSCDKELGLVQVRCENSAVLGERKNVNLPGVVVDLPTLTEKDKEDIMAWGVPNKIDMIALSFVRKGSDLVQVRKLLGHHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICVEAESTIDYGDVFKRIMEHSPVPMSPLESLASSAVRTANSARAALILVLTRGGTTAKLVAKYRPGTPILSVVVPELTTDTFDWSCSDESPARHSLIFRGLIPILSAASARASHAETTEDAIEFALQCAKGKGLCVNGDSVVVLHRVGTASIIKILTVK*