AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400870 MtrunA17_Chr4g0043301 99.200 500 4 0 1 500 1 500 0.0 1022
Msa1400870 MtrunA17_Chr7g0263711 93.600 500 32 0 1 500 1 500 0.0 969
Msa1400870 MtrunA17_Chr4g0043311 89.336 497 53 0 4 500 1 497 0.0 926
Msa1400870 MtrunA17_Chr6g0448901 78.819 491 104 0 10 500 20 510 0.0 818
Msa1400870 MtrunA17_Chr7g0265591 42.485 499 275 7 12 500 30 526 1.31e-128 384
Msa1400870 MtrunA17_Chr1g0197911 41.748 515 282 9 1 500 14 525 2.63e-127 380
Msa1400870 MtrunA17_Chr1g0179541 41.517 501 263 7 12 500 30 512 6.11e-122 367
Msa1400870 MtrunA17_Chr5g0400361 38.780 410 237 8 6 412 73 471 4.73e-89 283
Msa1400870 MtrunA17_Chr6g0463101 35.787 489 265 12 9 486 104 554 4.68e-84 270
Msa1400870 MtrunA17_Chr1g0202291 35.174 489 268 12 9 486 102 552 1.54e-83 269
Msa1400870 MtrunA17_Chr1g0188101 31.600 500 285 11 11 485 90 557 5.75e-71 236
Msa1400870 MtrunA17_Chr1g0206791 32.383 491 294 11 11 488 17 482 2.11e-69 230
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400870 AT5G56350.1 89.271 494 53 0 7 500 5 498 0.0 908
Msa1400870 AT4G26390.1 83.603 494 81 0 7 500 4 497 0.0 867
Msa1400870 AT5G08570.1 79.022 491 103 0 10 500 20 510 0.0 821
Msa1400870 AT5G08570.2 79.022 491 103 0 10 500 20 510 0.0 821
Msa1400870 AT5G08570.3 79.022 491 103 0 10 500 20 510 0.0 821
Msa1400870 AT5G63680.3 78.702 493 105 0 8 500 18 510 0.0 818
Msa1400870 AT5G63680.1 78.702 493 105 0 8 500 18 510 0.0 818
Msa1400870 AT5G63680.2 78.702 493 105 0 8 500 18 510 0.0 818
Msa1400870 AT3G04050.1 73.790 496 126 3 9 500 15 510 0.0 758
Msa1400870 AT3G25960.1 72.470 494 123 4 9 500 15 497 0.0 728
Msa1400870 AT3G55650.1 71.169 496 139 3 9 500 15 510 0.0 726
Msa1400870 AT3G55810.1 67.944 496 137 4 9 500 15 492 0.0 673
Msa1400870 AT2G36580.1 43.487 499 270 7 12 500 30 526 3.03e-130 389
Msa1400870 AT3G52990.1 43.287 499 271 7 12 500 30 526 2.82e-129 386
Msa1400870 AT3G52990.2 42.526 475 261 7 36 500 1 473 3.76e-120 361
Msa1400870 AT5G52920.1 36.179 492 272 13 11 495 111 567 1.42e-84 272
Msa1400870 AT1G32440.1 39.320 412 229 10 7 412 96 492 4.21e-81 263
Msa1400870 AT3G22960.1 31.717 495 289 12 11 485 118 583 3.25e-70 235
Msa1400870 AT3G49160.3 31.618 272 159 9 73 322 325 591 1.55e-21 98.6
Msa1400870 AT3G49160.1 31.618 272 159 9 73 322 413 679 1.75e-21 98.6

Find 136 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAACTCTGATGCATTTA+TGG 0.128456 tig0022477:+75964 Msa1400870:CDS
AAGCGGTTTCAGTTGTTTAT+TGG 0.237023 tig0022477:+73978 Msa1400870:five_prime_UTR
CAAAGTTTGCAACCCCTTCT+TGG 0.251729 tig0022477:-75931 None:intergenic
CGTGCAAACGATCTTAGTTT+TGG 0.261618 tig0022477:-74094 None:intergenic
TCTCAACAATAACAATAATA+AGG 0.268598 tig0022477:-76904 None:intergenic
GAGTGGTGTGGTGGTTCTTC+TGG 0.285238 tig0022477:-74026 None:intergenic
AGGAGGGACTACTGCAAAAT+TGG 0.314986 tig0022477:+76411 Msa1400870:CDS
GTACAAGTTCGAAAACTTCT+AGG 0.320879 tig0022477:+75581 Msa1400870:CDS
TGTGAGAACTCTGCTGTTCT+AGG 0.329692 tig0022477:+75413 Msa1400870:CDS
GCAGAAGCAGCACTTAATAT+TGG 0.330688 tig0022477:-76562 None:intergenic
TGATGTTGCGAATGCAGTTC+TGG 0.344149 tig0022477:+76150 Msa1400870:CDS
GAAAGGGACTCTGCGTTAAC+GGG 0.361244 tig0022477:+76647 Msa1400870:CDS
CTTATCGTGTGACAAAGAAT+TGG 0.361638 tig0022477:+75373 Msa1400870:CDS
TTGTATTCTCATCACCCTTT+AGG 0.370256 tig0022477:-75265 None:intergenic
CGATAAGACTGTAAATGATA+TGG 0.371207 tig0022477:-75357 None:intergenic
AGCTTCAGCTCTGGTTGGCC+GGG 0.390347 tig0022477:-76125 None:intergenic
TAGCTTCAGCTCTGGTTGGC+CGG 0.391145 tig0022477:-76126 None:intergenic
CAAGGAAGATATCATGGCTT+GGG 0.397205 tig0022477:+75499 Msa1400870:CDS
CCTTTCCCTTGGCACATTGA+AGG 0.403085 tig0022477:-76630 None:intergenic
GCTGAGAGCACCATTGACTA+TGG 0.403578 tig0022477:+76265 Msa1400870:CDS
GGAAAGGGACTCTGCGTTAA+CGG 0.404260 tig0022477:+76646 Msa1400870:CDS
CGCCGTCATGCTCGATACTA+AGG 0.406356 tig0022477:+74272 Msa1400870:CDS
TCAACTGACTATAGCCTAAA+GGG 0.420476 tig0022477:+75251 Msa1400870:CDS
CATGACGGCGCAGAGAATTC+CGG 0.420747 tig0022477:-74259 None:intergenic
CATCCAACGTACACTGTAGA+TGG 0.425221 tig0022477:-76815 None:intergenic
TTGTTTCAGTTGGATAGGTT+TGG 0.435015 tig0022477:-75210 None:intergenic
TGCTAGAGCAGCTCTCATAT+TGG 0.437951 tig0022477:+76378 Msa1400870:CDS
AGATGTATTCAAAAGGATAA+TGG 0.438677 tig0022477:+76288 Msa1400870:CDS
GGAACGACAACAGAAAGAAT+TGG 0.441249 tig0022477:-76457 None:intergenic
GCACGCTGGGACCCGCATCT+AGG 0.445382 tig0022477:+74112 Msa1400870:CDS
TTATCGTGTGACAAAGAATT+GGG 0.446712 tig0022477:+75374 Msa1400870:CDS
ACAGAAAGAATTGGCGTGCC+TGG 0.449963 tig0022477:-76448 None:intergenic
TATCATGATTGAGAAGTGTA+TGG 0.450523 tig0022477:+77051 Msa1400870:three_prime_UTR
GCGCTTTCATTTGTTCGAAA+AGG 0.450686 tig0022477:+75548 Msa1400870:CDS
CAAAATTGGTGGCTAAATAC+AGG 0.450918 tig0022477:+76425 Msa1400870:CDS
TTTCATTACCTTGTTTCAGT+TGG 0.451778 tig0022477:-75220 None:intergenic
TTACCTTGTTTCAGTTGGAT+AGG 0.452533 tig0022477:-75215 None:intergenic
TGTTCGAAAAGGTTCTGATC+TGG 0.452582 tig0022477:+75559 Msa1400870:CDS
TCCAATGGGCTCATGGGTAC+TGG 0.457116 tig0022477:-76319 None:intergenic
TAACGACTGATACCTTTGAT+TGG 0.457143 tig0022477:+76485 Msa1400870:CDS
AGAAATCCAGTTCGAATCTC+AGG 0.458723 tig0022477:-75179 None:intergenic
ACTAAGATCGTTTGCACGCT+GGG 0.459837 tig0022477:+74099 Msa1400870:CDS
GAGAGCTGCTCTAGCAGAGT+TGG 0.462449 tig0022477:-76371 None:intergenic
CTTTCCCTTGGCACATTGAA+GGG 0.463400 tig0022477:-76629 None:intergenic
ATTGTACGAACAGCAAGTTC+TGG 0.463793 tig0022477:-76223 None:intergenic
GAATACATCTCCATAGTCAA+TGG 0.466000 tig0022477:-76275 None:intergenic
TAACAATAATAAGGTAATAG+TGG 0.466373 tig0022477:-76895 None:intergenic
AACGCAGAGTCCCTTTCCCT+TGG 0.468309 tig0022477:-76641 None:intergenic
TTGGCTCATGATGTGAAGCC+CGG 0.476499 tig0022477:+75308 Msa1400870:CDS
TAGACTCTCCAATGGGCTCA+TGG 0.478114 tig0022477:-76326 None:intergenic
CAATTGGAATTTCCATTCCA+AGG 0.480988 tig0022477:-76000 None:intergenic
GCTAGATTCAACTTCTCTCA+TGG 0.485672 tig0022477:+74180 Msa1400870:CDS
GTGTGACAAAGAATTGGGTT+TGG 0.488491 tig0022477:+75379 Msa1400870:CDS
GTGCAATATCCAAGGAAAAC+CGG 0.489545 tig0022477:+76060 Msa1400870:CDS
AGAAAGAATGTTAATCTGCC+TGG 0.492316 tig0022477:+75440 Msa1400870:CDS
AATATCAAGCTATGTCTAGC+AGG 0.493341 tig0022477:-76526 None:intergenic
TAGGGGCCTGAGATTCGAAC+TGG 0.499972 tig0022477:+75173 Msa1400870:intron
CTTCAATGTGCCAAGGGAAA+GGG 0.500302 tig0022477:+76631 Msa1400870:CDS
TTCAACTGACTATAGCCTAA+AGG 0.500418 tig0022477:+75250 Msa1400870:CDS
ATCTGTGTCGCAGTAACGAC+CGG 0.500826 tig0022477:-76079 None:intergenic
CGTTAACGGGGATTCTGTTG+TGG 0.503390 tig0022477:+76660 Msa1400870:CDS
GCTTCAGCTCTGGTTGGCCG+GGG 0.507929 tig0022477:-76124 None:intergenic
GAAAGACAAGGAAGATATCA+TGG 0.513280 tig0022477:+75493 Msa1400870:CDS
TGGTTCTCATGAGTATCATC+AGG 0.514740 tig0022477:+74200 Msa1400870:CDS
CCTTCAATGTGCCAAGGGAA+AGG 0.523286 tig0022477:+76630 Msa1400870:CDS
AGTGTCATACTCTGCGCAGA+TGG 0.524172 tig0022477:+75332 Msa1400870:CDS
ACAGACTGTGTCATGCTTAG+TGG 0.525623 tig0022477:+76178 Msa1400870:CDS
ACAAGGAAGATATCATGGCT+TGG 0.526189 tig0022477:+75498 Msa1400870:CDS
TGCGCAGAGTATGACACTCC+CGG 0.530456 tig0022477:-75327 None:intergenic
AAGGTATCAGTCGTTAGCTC+AGG 0.530961 tig0022477:-76478 None:intergenic
CGCATCTAGGTCTATTCCCA+TGG 0.531643 tig0022477:+74125 Msa1400870:CDS
CGTTACTGCGACACAGATGT+TGG 0.535059 tig0022477:+76084 Msa1400870:CDS
ACTATGGAGATGTATTCAAA+AGG 0.538144 tig0022477:+76281 Msa1400870:CDS
GGAAGATCCACTACGACTCC+AGG 0.538876 tig0022477:-75458 None:intergenic
CTTGTCTTTCTCAGTCAAAG+TGG 0.540820 tig0022477:-75480 None:intergenic
AACTAAGATCGTTTGCACGC+TGG 0.542989 tig0022477:+74098 Msa1400870:CDS
CTTAGTGGTGAAACTGCTGC+TGG 0.547208 tig0022477:+76193 Msa1400870:CDS
AACATCAGTAGCTTCAGCTC+TGG 0.547477 tig0022477:-76134 None:intergenic
GGCAGGTTGAAAACCAAGAA+GGG 0.548016 tig0022477:+75918 Msa1400870:intron
GAACATTCTTCTCATGTCAA+AGG 0.556045 tig0022477:+75616 Msa1400870:CDS
AGACTCTCCAATGGGCTCAT+GGG 0.558290 tig0022477:-76325 None:intergenic
AGGGACTACTGCAAAATTGG+TGG 0.560616 tig0022477:+76414 Msa1400870:CDS
CTCATATTGGTTCTAACTAG+AGG 0.560702 tig0022477:+76391 Msa1400870:CDS
TTAATATTGGAATCAATCCT+CGG 0.562918 tig0022477:-76549 None:intergenic
ACCAGTACCCATGAGCCCAT+TGG 0.569139 tig0022477:+76318 Msa1400870:CDS
TTTGAGAATATCTATATAAG+CGG 0.569632 tig0022477:+73961 Msa1400870:five_prime_UTR
TTGTCTTTCTCAGTCAAAGT+GGG 0.570627 tig0022477:-75479 None:intergenic
TTTAATGGGAGATCATTTCA+CGG 0.575483 tig0022477:-76725 None:intergenic
TGGCTCATGATGTGAAGCCC+GGG 0.576246 tig0022477:+75309 Msa1400870:CDS
GGCACGTGGTGACCTTGGAA+TGG 0.579482 tig0022477:+75988 Msa1400870:CDS
AAGAAGCTAGACTCTCCAAT+GGG 0.579536 tig0022477:-76333 None:intergenic
TGATAATCTTAGAGCCGCCA+TGG 0.580668 tig0022477:+74230 Msa1400870:CDS
TTGGTGGCTAAATACAGGCC+AGG 0.581932 tig0022477:+76430 Msa1400870:CDS
TGGCAGGTTGAAAACCAAGA+AGG 0.582341 tig0022477:+75917 Msa1400870:intron
ATATCAAGCTATGTCTAGCA+GGG 0.582962 tig0022477:-76525 None:intergenic
AGAGCCGCCATGGAGAATAC+CGG 0.583837 tig0022477:+74240 Msa1400870:CDS
TCAGTAGCTTCAGCTCTGGT+TGG 0.584103 tig0022477:-76130 None:intergenic
TGTTGTGGTTCTGCATCGCG+TGG 0.586595 tig0022477:+76675 Msa1400870:CDS
GATTCGAACTGGATTTCTCA+AGG 0.588567 tig0022477:+75184 Msa1400870:CDS
ATTTGCCCTTCAATGTGCCA+AGG 0.591498 tig0022477:+76624 Msa1400870:CDS
TAAATGCATCAGAGTTTGCA+AGG 0.592927 tig0022477:-75961 None:intergenic
ATGGTGGCACGTGGTGACCT+TGG 0.597261 tig0022477:+75983 Msa1400870:CDS
ATTTATAAGTGCAATATCCA+AGG 0.598187 tig0022477:+76052 Msa1400870:CDS
GAGAATTCCGGTATTCTCCA+TGG 0.598680 tig0022477:-74247 None:intergenic
AGAACTTGCTGTTCGTACAA+TGG 0.602563 tig0022477:+76225 Msa1400870:CDS
AGACATAGCTTGATATTCCG+AGG 0.602907 tig0022477:+76532 Msa1400870:CDS
ATATTGGTTCTAACTAGAGG+AGG 0.607238 tig0022477:+76394 Msa1400870:CDS
CACTTTGACTGAGAAAGACA+AGG 0.607462 tig0022477:+75481 Msa1400870:CDS
TGAGAAGAATGTTCTTAGCA+TGG 0.609210 tig0022477:-75607 None:intergenic
TTTGCCCTTCAATGTGCCAA+GGG 0.609763 tig0022477:+76625 Msa1400870:CDS
GTTGCGAATGCAGTTCTGGA+TGG 0.610844 tig0022477:+76154 Msa1400870:CDS
GCGCAGAGTATGACACTCCC+GGG 0.615359 tig0022477:-75326 None:intergenic
ATCACTGCATGACCAATCAA+AGG 0.619997 tig0022477:-76497 None:intergenic
GAAGAAGCTAGACTCTCCAA+TGG 0.622268 tig0022477:-76334 None:intergenic
TAATCTGCCTGGAGTCGTAG+TGG 0.623976 tig0022477:+75451 Msa1400870:CDS
ATGGGAATAGACCTAGATGC+GGG 0.628393 tig0022477:-74123 None:intergenic
TATTGGTTCTAACTAGAGGA+GGG 0.629589 tig0022477:+76395 Msa1400870:CDS
AAACCTATCCAACTGAAACA+AGG 0.639584 tig0022477:+75212 Msa1400870:CDS
AAGGAAGATATCATGGCTTG+GGG 0.639801 tig0022477:+75500 Msa1400870:CDS
TCATCTCATCGATCTAAACA+TGG 0.643002 tig0022477:+74047 Msa1400870:exon
CGATGAGATGAGTGGTGTGG+TGG 0.644965 tig0022477:-74035 None:intergenic
AGTCAATGATCAAATCTCCC+CGG 0.646746 tig0022477:+76107 Msa1400870:CDS
AAAGGGACTCTGCGTTAACG+GGG 0.647503 tig0022477:+76648 Msa1400870:CDS
GTTGTGGTTCTGCATCGCGT+GGG 0.653541 tig0022477:+76676 Msa1400870:CDS
GCAGGTTGAAAACCAAGAAG+GGG 0.675723 tig0022477:+75919 Msa1400870:intron
TCAAACAAGCAAGTCTCACG+CGG 0.683267 tig0022477:-73943 None:intergenic
TACCTTAGTATCGAGCATGA+CGG 0.683613 tig0022477:-74274 None:intergenic
CATGGGAATAGACCTAGATG+CGG 0.689751 tig0022477:-74124 None:intergenic
GATCGATGAGATGAGTGGTG+TGG 0.702627 tig0022477:-74038 None:intergenic
ATACCATCTACAGTGTACGT+TGG 0.704657 tig0022477:+76812 Msa1400870:three_prime_UTR
AAACTCTGATGCATTTATGG+TGG 0.705208 tig0022477:+75967 Msa1400870:CDS
TATCAAGCTATGTCTAGCAG+GGG 0.708675 tig0022477:-76524 None:intergenic
GTTTAGATCGATGAGATGAG+TGG 0.731788 tig0022477:-74043 None:intergenic
GATGCATTTATGGTGGCACG+TGG 0.742236 tig0022477:+75974 Msa1400870:CDS
AATTCCGGTATTCTCCATGG+CGG 0.770920 tig0022477:-74244 None:intergenic
GAACAGCAGAGTTCTCACAG+CGG 0.862341 tig0022477:-75409 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAATCACTTTTTAAT+GGG - tig0022477:76742-76761 None:intergenic 10.0%
!!! CTGAAAATAATTTTTGTATT+TGG + tig0022477:74671-74690 Msa1400870:intron 15.0%
!! TACTTGATTCTTAATATTTA+TGG + tig0022477:74999-75018 Msa1400870:intron 15.0%
!!! GATAAAAAATCACTTTTTAA+TGG - tig0022477:76743-76762 None:intergenic 15.0%
!!! AGATTATATGTATGAATTTT+TGG + tig0022477:76954-76973 Msa1400870:three_prime_UTR 15.0%
!!! TGTTTTTGATTATTATTTTG+CGG + tig0022477:77001-77020 Msa1400870:three_prime_UTR 15.0%
!!! CTACTTTTGTTGAATAATTT+TGG + tig0022477:73919-73938 Msa1400870:five_prime_UTR 20.0%
!! TTTGAGAATATCTATATAAG+CGG + tig0022477:73961-73980 Msa1400870:five_prime_UTR 20.0%
!! AATTCTTATCCATACATATA+AGG - tig0022477:74434-74453 None:intergenic 20.0%
!! TAAAAGAACTATAGTCTATT+TGG - tig0022477:74931-74950 None:intergenic 20.0%
!! ATTAAGAATCAAGTAAAAAC+CGG - tig0022477:74994-75013 None:intergenic 20.0%
!! TAACAATAATAAGGTAATAG+TGG - tig0022477:76898-76917 None:intergenic 20.0%
!! TCTCAACAATAACAATAATA+AGG - tig0022477:76907-76926 None:intergenic 20.0%
!!! TGATTTTGACCTTATATGTA+TGG + tig0022477:74422-74441 Msa1400870:intron 25.0%
! TGTTAGATTAGGTTATGTTT+GGG + tig0022477:74508-74527 Msa1400870:intron 25.0%
!! TTTTATAAGATGTCTTAGAG+AGG + tig0022477:74635-74654 Msa1400870:intron 25.0%
!!! TATGGTTTAGAACCTTATTT+TGG + tig0022477:75017-75036 Msa1400870:intron 25.0%
! TTACAATACTCACCAAAATA+AGG - tig0022477:75032-75051 None:intergenic 25.0%
!!! TATTAAGAGAGTTTTAGTTG+CGG - tig0022477:75077-75096 None:intergenic 25.0%
!! GCAATCATGTCAATTTTATT+GGG - tig0022477:75530-75549 None:intergenic 25.0%
! AAGAGATAGAAAAAATCAGT+AGG - tig0022477:75835-75854 None:intergenic 25.0%
! ATTTATAAGTGCAATATCCA+AGG + tig0022477:76052-76071 Msa1400870:CDS 25.0%
! AGATGTATTCAAAAGGATAA+TGG + tig0022477:76288-76307 Msa1400870:CDS 25.0%
! TTAATATTGGAATCAATCCT+CGG - tig0022477:76552-76571 None:intergenic 25.0%
!!! GTGATTTTTTATCTGCTTTT+TGG + tig0022477:76750-76769 Msa1400870:three_prime_UTR 25.0%
!!! TTTGGCAAAGTATTTTATGA+TGG + tig0022477:76768-76787 Msa1400870:three_prime_UTR 25.0%
!! ACATCAATTGATGCTTTTAT+TGG + tig0022477:76842-76861 Msa1400870:three_prime_UTR 25.0%
!! CATCAATTGATGCTTTTATT+GGG + tig0022477:76843-76862 Msa1400870:three_prime_UTR 25.0%
!! ATCAATTGATGCTTTTATTG+GGG + tig0022477:76844-76863 Msa1400870:three_prime_UTR 25.0%
! ATGCAAATACGTGTAAAAAA+GGG - tig0022477:76874-76893 None:intergenic 25.0%
! TATGCAAATACGTGTAAAAA+AGG - tig0022477:76875-76894 None:intergenic 25.0%
!!! TTTTTGGTACTCAAAAATGT+AGG + tig0022477:76970-76989 Msa1400870:three_prime_UTR 25.0%
ACAGTTCAAACATGTATTGA+CGG - tig0022477:74491-74510 None:intergenic 30.0%
CATGTTTGAACTGTTAGATT+AGG + tig0022477:74497-74516 Msa1400870:intron 30.0%
CTGTTAGATTAGGTTATGTT+TGG + tig0022477:74507-74526 Msa1400870:intron 30.0%
TGTTTCATGCAAGTTATTAG+CGG + tig0022477:74611-74630 Msa1400870:intron 30.0%
!! ATAAAAGCATCTTCAATGTC+CGG + tig0022477:74972-74991 Msa1400870:intron 30.0%
! TTTCATTACCTTGTTTCAGT+TGG - tig0022477:75223-75242 None:intergenic 30.0%
CGATAAGACTGTAAATGATA+TGG - tig0022477:75360-75379 None:intergenic 30.0%
TTATCGTGTGACAAAGAATT+GGG + tig0022477:75374-75393 Msa1400870:CDS 30.0%
! CGCAATCATGTCAATTTTAT+TGG - tig0022477:75531-75550 None:intergenic 30.0%
! GCGAGAAATATTTTCTCAAT+TGG - tig0022477:76019-76038 None:intergenic 30.0%
ACTATGGAGATGTATTCAAA+AGG + tig0022477:76281-76300 Msa1400870:CDS 30.0%
!! CAAGATTTTGATGATTGATG+CGG - tig0022477:76704-76723 None:intergenic 30.0%
TTTAATGGGAGATCATTTCA+CGG - tig0022477:76728-76747 None:intergenic 30.0%
! TATCATGATTGAGAAGTGTA+TGG + tig0022477:77051-77070 Msa1400870:three_prime_UTR 30.0%
AAGCGGTTTCAGTTGTTTAT+TGG + tig0022477:73978-73997 Msa1400870:five_prime_UTR 35.0%
TCATCTCATCGATCTAAACA+TGG + tig0022477:74047-74066 Msa1400870:exon 35.0%
!! GTGCAAACGATCTTAGTTTT+GGG - tig0022477:74096-74115 None:intergenic 35.0%
AAGATGTCTTAGAGAGGTTA+TGG + tig0022477:74641-74660 Msa1400870:intron 35.0%
! TTGGTGAGTATTGTAATTCG+AGG + tig0022477:75036-75055 Msa1400870:intron 35.0%
! TGGTGAGTATTGTAATTCGA+GGG + tig0022477:75037-75056 Msa1400870:intron 35.0%
ATGAAGCAACTTGAAAATGC+TGG - tig0022477:75108-75127 None:intergenic 35.0%
TTACATTGCTCATTGCTGTA+GGG + tig0022477:75155-75174 Msa1400870:intron 35.0%
TTGTTTCAGTTGGATAGGTT+TGG - tig0022477:75213-75232 None:intergenic 35.0%
AAACCTATCCAACTGAAACA+AGG + tig0022477:75212-75231 Msa1400870:CDS 35.0%
! TTACCTTGTTTCAGTTGGAT+AGG - tig0022477:75218-75237 None:intergenic 35.0%
TTCAACTGACTATAGCCTAA+AGG + tig0022477:75250-75269 Msa1400870:CDS 35.0%
TCAACTGACTATAGCCTAAA+GGG + tig0022477:75251-75270 Msa1400870:CDS 35.0%
TTGTATTCTCATCACCCTTT+AGG - tig0022477:75268-75287 None:intergenic 35.0%
CTTATCGTGTGACAAAGAAT+TGG + tig0022477:75373-75392 Msa1400870:CDS 35.0%
AGAAAGAATGTTAATCTGCC+TGG + tig0022477:75440-75459 Msa1400870:CDS 35.0%
TTGTCTTTCTCAGTCAAAGT+GGG - tig0022477:75482-75501 None:intergenic 35.0%
GAAAGACAAGGAAGATATCA+TGG + tig0022477:75493-75512 Msa1400870:CDS 35.0%
GTACAAGTTCGAAAACTTCT+AGG + tig0022477:75581-75600 Msa1400870:CDS 35.0%
TGAGAAGAATGTTCTTAGCA+TGG - tig0022477:75610-75629 None:intergenic 35.0%
GAACATTCTTCTCATGTCAA+AGG + tig0022477:75616-75635 Msa1400870:CDS 35.0%
TCCACGTTAATGTGTGTTAT+TGG + tig0022477:75757-75776 Msa1400870:intron 35.0%
TCCAATAACACACATTAACG+TGG - tig0022477:75761-75780 None:intergenic 35.0%
TAAATGCATCAGAGTTTGCA+AGG - tig0022477:75964-75983 None:intergenic 35.0%
TGCAAACTCTGATGCATTTA+TGG + tig0022477:75964-75983 Msa1400870:CDS 35.0%
AAACTCTGATGCATTTATGG+TGG + tig0022477:75967-75986 Msa1400870:CDS 35.0%
CAATTGGAATTTCCATTCCA+AGG - tig0022477:76003-76022 None:intergenic 35.0%
GAATACATCTCCATAGTCAA+TGG - tig0022477:76278-76297 None:intergenic 35.0%
!! CTCATATTGGTTCTAACTAG+AGG + tig0022477:76391-76410 Msa1400870:CDS 35.0%
!! ATATTGGTTCTAACTAGAGG+AGG + tig0022477:76394-76413 Msa1400870:CDS 35.0%
!! TATTGGTTCTAACTAGAGGA+GGG + tig0022477:76395-76414 Msa1400870:CDS 35.0%
! CAAAATTGGTGGCTAAATAC+AGG + tig0022477:76425-76444 Msa1400870:CDS 35.0%
TAACGACTGATACCTTTGAT+TGG + tig0022477:76485-76504 Msa1400870:CDS 35.0%
ATATCAAGCTATGTCTAGCA+GGG - tig0022477:76528-76547 None:intergenic 35.0%
AATATCAAGCTATGTCTAGC+AGG - tig0022477:76529-76548 None:intergenic 35.0%
GTTTAGATCGATGAGATGAG+TGG - tig0022477:74046-74065 None:intergenic 40.0%
! CGTGCAAACGATCTTAGTTT+TGG - tig0022477:74097-74116 None:intergenic 40.0%
GCTAGATTCAACTTCTCTCA+TGG + tig0022477:74180-74199 Msa1400870:CDS 40.0%
TGGTTCTCATGAGTATCATC+AGG + tig0022477:74200-74219 Msa1400870:CDS 40.0%
! TACCTTAGTATCGAGCATGA+CGG - tig0022477:74277-74296 None:intergenic 40.0%
CTTACATTGCTCATTGCTGT+AGG + tig0022477:75154-75173 Msa1400870:intron 40.0%
TACATTGCTCATTGCTGTAG+GGG + tig0022477:75156-75175 Msa1400870:intron 40.0%
AGAAATCCAGTTCGAATCTC+AGG - tig0022477:75182-75201 None:intergenic 40.0%
GATTCGAACTGGATTTCTCA+AGG + tig0022477:75184-75203 Msa1400870:CDS 40.0%
CTCCATGAGCTACAAAAAGT+TGG + tig0022477:75289-75308 Msa1400870:CDS 40.0%
! AGCCAACTTTTTGTAGCTCA+TGG - tig0022477:75294-75313 None:intergenic 40.0%
GTGTGACAAAGAATTGGGTT+TGG + tig0022477:75379-75398 Msa1400870:CDS 40.0%
CTTGTCTTTCTCAGTCAAAG+TGG - tig0022477:75483-75502 None:intergenic 40.0%
CACTTTGACTGAGAAAGACA+AGG + tig0022477:75481-75500 Msa1400870:CDS 40.0%
ACAAGGAAGATATCATGGCT+TGG + tig0022477:75498-75517 Msa1400870:CDS 40.0%
CAAGGAAGATATCATGGCTT+GGG + tig0022477:75499-75518 Msa1400870:CDS 40.0%
AAGGAAGATATCATGGCTTG+GGG + tig0022477:75500-75519 Msa1400870:CDS 40.0%
GCGCTTTCATTTGTTCGAAA+AGG + tig0022477:75548-75567 Msa1400870:CDS 40.0%
! TGTTCGAAAAGGTTCTGATC+TGG + tig0022477:75559-75578 Msa1400870:CDS 40.0%
CATACATTTGCAAGTTGCAG+AGG - tig0022477:75897-75916 None:intergenic 40.0%
CTGCAACTTGCAAATGTATG+TGG + tig0022477:75897-75916 Msa1400870:intron 40.0%
AACTTGCAAATGTATGTGGC+AGG + tig0022477:75901-75920 Msa1400870:intron 40.0%
GTGCAATATCCAAGGAAAAC+CGG + tig0022477:76060-76079 Msa1400870:CDS 40.0%
AGTCAATGATCAAATCTCCC+CGG + tig0022477:76107-76126 Msa1400870:CDS 40.0%
ATTGTACGAACAGCAAGTTC+TGG - tig0022477:76226-76245 None:intergenic 40.0%
!! AGAACTTGCTGTTCGTACAA+TGG + tig0022477:76225-76244 Msa1400870:CDS 40.0%
AAGAAGCTAGACTCTCCAAT+GGG - tig0022477:76336-76355 None:intergenic 40.0%
GGAACGACAACAGAAAGAAT+TGG - tig0022477:76460-76479 None:intergenic 40.0%
ATCACTGCATGACCAATCAA+AGG - tig0022477:76500-76519 None:intergenic 40.0%
TATCAAGCTATGTCTAGCAG+GGG - tig0022477:76527-76546 None:intergenic 40.0%
AGACATAGCTTGATATTCCG+AGG + tig0022477:76532-76551 Msa1400870:CDS 40.0%
GCAGAAGCAGCACTTAATAT+TGG - tig0022477:76565-76584 None:intergenic 40.0%
ATACCATCTACAGTGTACGT+TGG + tig0022477:76812-76831 Msa1400870:three_prime_UTR 40.0%
TCAAACAAGCAAGTCTCACG+CGG - tig0022477:73946-73965 None:intergenic 45.0%
AACTAAGATCGTTTGCACGC+TGG + tig0022477:74098-74117 Msa1400870:CDS 45.0%
ACTAAGATCGTTTGCACGCT+GGG + tig0022477:74099-74118 Msa1400870:CDS 45.0%
ATGGGAATAGACCTAGATGC+GGG - tig0022477:74126-74145 None:intergenic 45.0%
CATGGGAATAGACCTAGATG+CGG - tig0022477:74127-74146 None:intergenic 45.0%
! CGCAAAAGCTTTTCGACCAT+GGG - tig0022477:74144-74163 None:intergenic 45.0%
! TCGCAAAAGCTTTTCGACCA+TGG - tig0022477:74145-74164 None:intergenic 45.0%
! TCGAAAAGCTTTTGCGAGCA+GGG + tig0022477:74148-74167 Msa1400870:CDS 45.0%
TGATAATCTTAGAGCCGCCA+TGG + tig0022477:74230-74249 Msa1400870:CDS 45.0%
AATTCCGGTATTCTCCATGG+CGG - tig0022477:74247-74266 None:intergenic 45.0%
GAGAATTCCGGTATTCTCCA+TGG - tig0022477:74250-74269 None:intergenic 45.0%
TGTGAGAACTCTGCTGTTCT+AGG + tig0022477:75413-75432 Msa1400870:CDS 45.0%
! TGGCAGGTTGAAAACCAAGA+AGG + tig0022477:75917-75936 Msa1400870:intron 45.0%
! GGCAGGTTGAAAACCAAGAA+GGG + tig0022477:75918-75937 Msa1400870:intron 45.0%
! GCAGGTTGAAAACCAAGAAG+GGG + tig0022477:75919-75938 Msa1400870:intron 45.0%
CAAAGTTTGCAACCCCTTCT+TGG - tig0022477:75934-75953 None:intergenic 45.0%
AACATCAGTAGCTTCAGCTC+TGG - tig0022477:76137-76156 None:intergenic 45.0%
TGATGTTGCGAATGCAGTTC+TGG + tig0022477:76150-76169 Msa1400870:CDS 45.0%
ACAGACTGTGTCATGCTTAG+TGG + tig0022477:76178-76197 Msa1400870:CDS 45.0%
GAAGAAGCTAGACTCTCCAA+TGG - tig0022477:76337-76356 None:intergenic 45.0%
TGCTAGAGCAGCTCTCATAT+TGG + tig0022477:76378-76397 Msa1400870:CDS 45.0%
AGGAGGGACTACTGCAAAAT+TGG + tig0022477:76411-76430 Msa1400870:CDS 45.0%
AGGGACTACTGCAAAATTGG+TGG + tig0022477:76414-76433 Msa1400870:CDS 45.0%
! AAGGTATCAGTCGTTAGCTC+AGG - tig0022477:76481-76500 None:intergenic 45.0%
ATTTGCCCTTCAATGTGCCA+AGG + tig0022477:76624-76643 Msa1400870:CDS 45.0%
TTTGCCCTTCAATGTGCCAA+GGG + tig0022477:76625-76644 Msa1400870:CDS 45.0%
CTTTCCCTTGGCACATTGAA+GGG - tig0022477:76632-76651 None:intergenic 45.0%
CTTCAATGTGCCAAGGGAAA+GGG + tig0022477:76631-76650 Msa1400870:CDS 45.0%
CATCCAACGTACACTGTAGA+TGG - tig0022477:76818-76837 None:intergenic 45.0%
!! TCATAATAAATAAAAAAAAA+AGG - tig0022477:74305-74324 None:intergenic 5.0%
!!! ATTTTTTATTATTTTTTTCA+TGG + tig0022477:75654-75673 Msa1400870:intron 5.0%
GATCGATGAGATGAGTGGTG+TGG - tig0022477:74041-74060 None:intergenic 50.0%
CGCATCTAGGTCTATTCCCA+TGG + tig0022477:74125-74144 Msa1400870:CDS 50.0%
! GTCGAAAAGCTTTTGCGAGC+AGG + tig0022477:74147-74166 Msa1400870:CDS 50.0%
TTGGCTCATGATGTGAAGCC+CGG + tig0022477:75308-75327 Msa1400870:CDS 50.0%
AGTGTCATACTCTGCGCAGA+TGG + tig0022477:75332-75351 Msa1400870:CDS 50.0%
GAACAGCAGAGTTCTCACAG+CGG - tig0022477:75412-75431 None:intergenic 50.0%
TAATCTGCCTGGAGTCGTAG+TGG + tig0022477:75451-75470 Msa1400870:CDS 50.0%
GATGCATTTATGGTGGCACG+TGG + tig0022477:75974-75993 Msa1400870:CDS 50.0%
!! CAGTAACGACCGGTTTTCCT+TGG - tig0022477:76072-76091 None:intergenic 50.0%
ATCTGTGTCGCAGTAACGAC+CGG - tig0022477:76082-76101 None:intergenic 50.0%
CGTTACTGCGACACAGATGT+TGG + tig0022477:76084-76103 Msa1400870:CDS 50.0%
! TCAGTAGCTTCAGCTCTGGT+TGG - tig0022477:76133-76152 None:intergenic 50.0%
!! GTTGCGAATGCAGTTCTGGA+TGG + tig0022477:76154-76173 Msa1400870:CDS 50.0%
CTTAGTGGTGAAACTGCTGC+TGG + tig0022477:76193-76212 Msa1400870:CDS 50.0%
!! GCTGAGAGCACCATTGACTA+TGG + tig0022477:76265-76284 Msa1400870:CDS 50.0%
! AGACTCTCCAATGGGCTCAT+GGG - tig0022477:76328-76347 None:intergenic 50.0%
! TAGACTCTCCAATGGGCTCA+TGG - tig0022477:76329-76348 None:intergenic 50.0%
! TTGGTGGCTAAATACAGGCC+AGG + tig0022477:76430-76449 Msa1400870:CDS 50.0%
ACAGAAAGAATTGGCGTGCC+TGG - tig0022477:76451-76470 None:intergenic 50.0%
CCTTTCCCTTGGCACATTGA+AGG - tig0022477:76633-76652 None:intergenic 50.0%
CCTTCAATGTGCCAAGGGAA+AGG + tig0022477:76630-76649 Msa1400870:CDS 50.0%
GGAAAGGGACTCTGCGTTAA+CGG + tig0022477:76646-76665 Msa1400870:CDS 50.0%
GAAAGGGACTCTGCGTTAAC+GGG + tig0022477:76647-76666 Msa1400870:CDS 50.0%
AAAGGGACTCTGCGTTAACG+GGG + tig0022477:76648-76667 Msa1400870:CDS 50.0%
CGTTAACGGGGATTCTGTTG+TGG + tig0022477:76660-76679 Msa1400870:CDS 50.0%
GAGTGGTGTGGTGGTTCTTC+TGG - tig0022477:74029-74048 None:intergenic 55.0%
CGATGAGATGAGTGGTGTGG+TGG - tig0022477:74038-74057 None:intergenic 55.0%
AGAGCCGCCATGGAGAATAC+CGG + tig0022477:74240-74259 Msa1400870:CDS 55.0%
CATGACGGCGCAGAGAATTC+CGG - tig0022477:74262-74281 None:intergenic 55.0%
CGCCGTCATGCTCGATACTA+AGG + tig0022477:74272-74291 Msa1400870:CDS 55.0%
TAGGGGCCTGAGATTCGAAC+TGG + tig0022477:75173-75192 Msa1400870:intron 55.0%
TGGCTCATGATGTGAAGCCC+GGG + tig0022477:75309-75328 Msa1400870:CDS 55.0%
TGCGCAGAGTATGACACTCC+CGG - tig0022477:75330-75349 None:intergenic 55.0%
GGAAGATCCACTACGACTCC+AGG - tig0022477:75461-75480 None:intergenic 55.0%
! TAGCTTCAGCTCTGGTTGGC+CGG - tig0022477:76129-76148 None:intergenic 55.0%
ACCAGTACCCATGAGCCCAT+TGG + tig0022477:76318-76337 Msa1400870:CDS 55.0%
! TCCAATGGGCTCATGGGTAC+TGG - tig0022477:76322-76341 None:intergenic 55.0%
GAGAGCTGCTCTAGCAGAGT+TGG - tig0022477:76374-76393 None:intergenic 55.0%
AACGCAGAGTCCCTTTCCCT+TGG - tig0022477:76644-76663 None:intergenic 55.0%
! TGTTGTGGTTCTGCATCGCG+TGG + tig0022477:76675-76694 Msa1400870:CDS 55.0%
! GTTGTGGTTCTGCATCGCGT+GGG + tig0022477:76676-76695 Msa1400870:CDS 55.0%
GCGCAGAGTATGACACTCCC+GGG - tig0022477:75329-75348 None:intergenic 60.0%
ATGGTGGCACGTGGTGACCT+TGG + tig0022477:75983-76002 Msa1400870:CDS 60.0%
GGCACGTGGTGACCTTGGAA+TGG + tig0022477:75988-76007 Msa1400870:CDS 60.0%
! AGCTTCAGCTCTGGTTGGCC+GGG - tig0022477:76128-76147 None:intergenic 60.0%
! GCTTCAGCTCTGGTTGGCCG+GGG - tig0022477:76127-76146 None:intergenic 65.0%
GCACGCTGGGACCCGCATCT+AGG + tig0022477:74112-74131 Msa1400870:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0022477 gene 73906 77078 73906 ID=Msa1400870;Name=Msa1400870
tig0022477 mRNA 73906 77078 73906 ID=Msa1400870-mRNA-1;Parent=Msa1400870;Name=Msa1400870-mRNA-1;_AED=0.25;_eAED=0.25;_QI=160|1|1|1|1|1|3|343|500
tig0022477 exon 73906 74293 73906 ID=Msa1400870-mRNA-1:exon:17953;Parent=Msa1400870-mRNA-1
tig0022477 exon 75176 75637 75176 ID=Msa1400870-mRNA-1:exon:17954;Parent=Msa1400870-mRNA-1
tig0022477 exon 75923 77078 75923 ID=Msa1400870-mRNA-1:exon:17955;Parent=Msa1400870-mRNA-1
tig0022477 five_prime_UTR 73906 74065 73906 ID=Msa1400870-mRNA-1:five_prime_utr;Parent=Msa1400870-mRNA-1
tig0022477 CDS 74066 74293 74066 ID=Msa1400870-mRNA-1:cds;Parent=Msa1400870-mRNA-1
tig0022477 CDS 75176 75637 75176 ID=Msa1400870-mRNA-1:cds;Parent=Msa1400870-mRNA-1
tig0022477 CDS 75923 76735 75923 ID=Msa1400870-mRNA-1:cds;Parent=Msa1400870-mRNA-1
tig0022477 three_prime_UTR 76736 77078 76736 ID=Msa1400870-mRNA-1:three_prime_utr;Parent=Msa1400870-mRNA-1
Gene Sequence

>Msa1400870

ATGGCGACGATTGTAGCAGAGAAGAAGCCCAAAACTAAGATCGTTTGCACGCTGGGACCCGCATCTAGGTCTATTCCCATGGTCGAAAAGCTTTTGCGAGCAGGGATGAACGTTGCTAGATTCAACTTCTCTCATGGTTCTCATGAGTATCATCAGGAAACTCTTGATAATCTTAGAGCCGCCATGGAGAATACCGGAATTCTCTGCGCCGTCATGCTCGATACTAAGGGGCCTGAGATTCGAACTGGATTTCTCAAGGACGCCAAACCTATCCAACTGAAACAAGGTAATGAAATAACTATTTCAACTGACTATAGCCTAAAGGGTGATGAGAATACAATCTCCATGAGCTACAAAAAGTTGGCTCATGATGTGAAGCCCGGGAGTGTCATACTCTGCGCAGATGGAACCATATCATTTACAGTCTTATCGTGTGACAAAGAATTGGGTTTGGTTCAAGTCCGCTGTGAGAACTCTGCTGTTCTAGGCGAGAGAAAGAATGTTAATCTGCCTGGAGTCGTAGTGGATCTTCCCACTTTGACTGAGAAAGACAAGGAAGATATCATGGCTTGGGGAGTTCCCAATAAAATTGACATGATTGCGCTTTCATTTGTTCGAAAAGGTTCTGATCTGGTACAAGTTCGAAAACTTCTAGGACACCATGCTAAGAACATTCTTCTCATGTCAAAGGTTGAAAACCAAGAAGGGGTTGCAAACTTTGATGATATCCTTGCAAACTCTGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATTGAGAAAATATTTCTCGCACAGAAAGTGATGATTTATAAGTGCAATATCCAAGGAAAACCGGTCGTTACTGCGACACAGATGTTGGAGTCAATGATCAAATCTCCCCGGCCAACCAGAGCTGAAGCTACTGATGTTGCGAATGCAGTTCTGGATGGAACAGACTGTGTCATGCTTAGTGGTGAAACTGCTGCTGGAGCTTATCCAGAACTTGCTGTTCGTACAATGGCTAAAATATGTGTTGAAGCTGAGAGCACCATTGACTATGGAGATGTATTCAAAAGGATAATGGAGCACTCACCAGTACCCATGAGCCCATTGGAGAGTCTAGCTTCTTCTGCTGTTAGAACTGCCAACTCTGCTAGAGCAGCTCTCATATTGGTTCTAACTAGAGGAGGGACTACTGCAAAATTGGTGGCTAAATACAGGCCAGGCACGCCAATTCTTTCTGTTGTCGTTCCTGAGCTAACGACTGATACCTTTGATTGGTCATGCAGTGATGAGTCCCCTGCTAGACATAGCTTGATATTCCGAGGATTGATTCCAATATTAAGTGCTGCTTCTGCTAGAGCTTCTCATGCAGAAACAACAGAAGATGCAATAGAATTTGCCCTTCAATGTGCCAAGGGAAAGGGACTCTGCGTTAACGGGGATTCTGTTGTGGTTCTGCATCGCGTGGGTACCGCATCAATCATCAAAATCTTGACCGTGAAATGA

Protein sequence

>Msa1400870

MATIVAEKKPKTKIVCTLGPASRSIPMVEKLLRAGMNVARFNFSHGSHEYHQETLDNLRAAMENTGILCAVMLDTKGPEIRTGFLKDAKPIQLKQGNEITISTDYSLKGDENTISMSYKKLAHDVKPGSVILCADGTISFTVLSCDKELGLVQVRCENSAVLGERKNVNLPGVVVDLPTLTEKDKEDIMAWGVPNKIDMIALSFVRKGSDLVQVRKLLGHHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICVEAESTIDYGDVFKRIMEHSPVPMSPLESLASSAVRTANSARAALILVLTRGGTTAKLVAKYRPGTPILSVVVPELTTDTFDWSCSDESPARHSLIFRGLIPILSAASARASHAETTEDAIEFALQCAKGKGLCVNGDSVVVLHRVGTASIIKILTVK*