AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1309430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309430 MtrunA17_Chr8g0335981 98.750 800 9 1 1 799 1 800 0.0 1575
Msa1309430 MtrunA17_Chr7g0250221 63.027 806 230 15 1 782 1 762 0.0 850
Msa1309430 MtrunA17_Chr8g0372111 57.241 290 120 2 191 476 392 681 2.62e-106 349
Msa1309430 MtrunA17_Chr7g0276201 29.373 303 199 10 174 473 67 357 1.08e-32 132
Msa1309430 MtrunA17_Chr7g0266451 31.020 245 161 5 215 458 102 339 9.88e-30 124
Msa1309430 MtrunA17_Chr4g0026301 29.358 327 207 7 136 457 43 350 5.42e-23 103
Msa1309430 MtrunA17_Chr1g0153181 24.016 254 170 7 216 457 34 276 2.07e-15 80.5
Msa1309430 MtrunA17_Chr4g0068631 30.508 177 102 6 215 377 89 258 1.08e-14 78.2
Msa1309430 MtrunA17_Chr6g0465751 22.134 253 178 6 216 460 27 268 1.83e-12 70.9
Msa1309430 MtrunA17_Chr2g0288251 23.792 269 171 10 216 458 62 322 3.30e-12 69.3
Msa1309430 MtrunA17_Chr3g0134141 23.504 234 160 7 216 439 26 250 4.72e-12 69.7
Msa1309430 MtrunA17_Chr7g0265341 22.353 255 175 6 216 458 72 315 3.07e-11 67.0
Msa1309430 MtrunA17_Chr4g0044541 25.954 262 155 7 169 401 165 416 6.22e-11 65.9
Msa1309430 MtrunA17_Chr0c09g0493511 22.022 277 177 9 209 459 26 289 8.72e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309430 AT2G44710.2 57.340 797 290 15 1 765 1 779 0.0 708
Msa1309430 AT2G44710.1 57.340 797 290 15 1 765 1 779 0.0 708
Msa1309430 AT2G44710.4 60.993 705 232 11 90 765 4 694 0.0 699
Msa1309430 AT2G44710.3 52.668 431 110 13 389 765 25 415 5.46e-109 340
Msa1309430 AT4G00830.2 30.263 304 184 9 159 449 60 348 6.15e-33 134
Msa1309430 AT4G00830.1 30.263 304 184 9 159 449 60 348 6.15e-33 134
Msa1309430 AT4G00830.6 30.263 304 184 9 159 449 60 348 6.15e-33 134
Msa1309430 AT4G00830.4 29.605 304 186 9 159 449 60 348 3.95e-31 128
Msa1309430 AT4G00830.3 28.947 304 180 9 159 449 60 340 6.81e-29 122
Msa1309430 AT4G00830.5 28.947 304 180 9 159 449 60 340 6.81e-29 122
Msa1309430 AT3G52660.3 30.638 235 158 4 215 447 93 324 3.33e-26 113
Msa1309430 AT3G52660.1 30.638 235 158 4 215 447 93 324 3.33e-26 113
Msa1309430 AT3G52660.2 30.638 235 158 4 215 447 93 324 3.33e-26 113
Msa1309430 AT2G47310.1 31.667 180 102 5 215 377 111 286 8.18e-16 81.6
Msa1309430 AT4G34110.1 23.622 254 171 6 216 457 38 280 6.57e-15 79.3
Msa1309430 AT4G34110.1 28.241 216 123 5 210 401 211 418 7.60e-11 66.2
Msa1309430 AT4G16280.3 27.586 174 111 3 215 377 121 290 1.91e-13 74.3
Msa1309430 AT4G16280.2 27.586 174 111 3 215 377 121 290 2.75e-13 74.3
Msa1309430 AT4G16280.4 27.586 174 111 3 215 377 46 215 4.76e-13 73.2
Msa1309430 AT3G16380.1 25.097 259 165 7 216 458 23 268 7.49e-13 72.4
Msa1309430 AT1G49760.1 22.742 299 188 8 209 472 128 418 1.34e-12 72.0
Msa1309430 AT1G49760.2 22.742 299 188 8 209 472 128 418 1.34e-12 72.0
Msa1309430 AT3G13224.2 31.034 145 83 5 215 347 20 159 2.70e-12 69.7
Msa1309430 AT1G71770.1 23.256 258 172 7 216 459 61 306 9.36e-12 69.3
Msa1309430 AT1G71770.2 23.256 258 172 7 216 459 61 306 9.36e-12 69.3
Msa1309430 AT2G36660.1 23.320 253 173 6 216 458 26 267 1.18e-11 68.6
Msa1309430 AT3G13224.3 31.034 145 83 5 215 347 11 150 1.19e-11 67.4
Msa1309430 AT1G22760.1 21.933 269 176 8 216 458 138 398 1.23e-11 68.9

Find 336 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCTGCAATTTCAGATTAA+TGG 0.120288 8_4:-5891102 Msa1309430:intron
GCTATTTATAGCATTATATT+TGG 0.124459 8_4:-5888149 Msa1309430:three_prime_UTR
TGCGATCCACAAAGAAATTT+AGG 0.171647 8_4:-5892860 Msa1309430:five_prime_UTR
CTATATGAATACACTATTTA+TGG 0.194206 8_4:+5887073 None:intergenic
ACTCAACATTGCTCAGAAAT+AGG 0.200598 8_4:+5886968 None:intergenic
CCTCTTCTGCAGTCTCTTAA+AGG 0.203548 8_4:+5890743 None:intergenic
GGTTTACTTCTAGTTTATTT+TGG 0.211330 8_4:-5886670 Msa1309430:three_prime_UTR
CTGAAAGACGCCCAACTTAT+AGG 0.217326 8_4:-5889421 Msa1309430:CDS
CTTGTTTGGTTAAGGATTAA+TGG 0.234976 8_4:-5887878 Msa1309430:three_prime_UTR
TTCTTTCAATTTGCTATCAT+TGG 0.239685 8_4:-5886645 Msa1309430:three_prime_UTR
AAGGAGAAGTTGAAGCATTA+TGG 0.243038 8_4:-5890873 Msa1309430:CDS
TTGGGATGTGTTGGTGTTGT+AGG 0.249916 8_4:-5887664 Msa1309430:three_prime_UTR
GGACAGTGATACCCTCTATT+TGG 0.255911 8_4:-5891052 Msa1309430:CDS
GGCAGCCGAAGTTCTATTTC+TGG 0.258447 8_4:-5888836 Msa1309430:CDS
AGTAGAGTTGCTGCAGATTA+TGG 0.261306 8_4:-5889458 Msa1309430:CDS
AAACCGTGGATTTGCATTCT+TGG 0.273692 8_4:-5890796 Msa1309430:CDS
GCAGCACGAGCAGTACTTCT+AGG 0.280985 8_4:+5889362 None:intergenic
ATGACGGCCTTTGAAGCTTA+TGG 0.290365 8_4:-5888210 Msa1309430:three_prime_UTR
CGTGATTATGATTCTCTATC+TGG 0.292725 8_4:-5889239 Msa1309430:CDS
ATGTTATGAAGCTTACAATT+TGG 0.313318 8_4:-5888187 Msa1309430:three_prime_UTR
GAGAGACGAGCGTCTAGATT+TGG 0.313762 8_4:-5891692 Msa1309430:CDS
TTACATGGGCAGCGGTGGTT+CGG 0.320424 8_4:-5888455 Msa1309430:CDS
CAATAATGTCAAGGCCTTCT+TGG 0.321408 8_4:-5889805 Msa1309430:CDS
GTAGAAGATTCTAATGATAA+AGG 0.321671 8_4:-5890822 Msa1309430:CDS
GCGATCCACAAAGAAATTTA+GGG 0.321865 8_4:-5892859 Msa1309430:five_prime_UTR
AAATAATTACTATGCGAAAT+CGG 0.321968 8_4:+5887475 None:intergenic
ACAGATCCGACATAATAAAT+TGG 0.322938 8_4:-5888243 Msa1309430:intron
AGAAGATGAAGAGGAGGTTA+AGG 0.326174 8_4:-5891734 Msa1309430:CDS
CGGAATCTTCTGAAGAAATA+TGG 0.327291 8_4:-5890137 Msa1309430:CDS
GACTATGGATTTGTTACCTT+TGG 0.329610 8_4:-5890062 Msa1309430:CDS
CAGCATTACTGGTACAGAAT+TGG 0.331570 8_4:-5890009 Msa1309430:CDS
AGTAATAAGAATACTACTTC+AGG 0.334390 8_4:-5887715 Msa1309430:three_prime_UTR
AATGTTGGTGAAGGTGATTC+AGG 0.337243 8_4:-5891550 Msa1309430:CDS
GTTATTGAATTTGTGATGTA+TGG 0.337285 8_4:-5888054 Msa1309430:three_prime_UTR
TGCTCCAATACCATTTCATT+TGG 0.338317 8_4:-5887926 Msa1309430:three_prime_UTR
GTCTTCGGAGGCATTGTTAT+TGG 0.339548 8_4:+5892824 None:intergenic
TTGATGCACTTCCTCCTTCA+TGG 0.343649 8_4:-5890175 Msa1309430:CDS
AGATGTGCTGACAGCATTAC+TGG 0.343835 8_4:-5890020 Msa1309430:CDS
ATTGGGTGAAGGTGACAAAA+AGG 0.345418 8_4:-5889991 Msa1309430:intron
CATATTTCTTCAGAAGATTC+CGG 0.347028 8_4:+5890138 None:intergenic
ACTCTAGTTTAGCTCTTGTT+AGG 0.347194 8_4:-5886717 Msa1309430:three_prime_UTR
GGCTAGAGATGCTACTTGTT+TGG 0.347463 8_4:-5887892 Msa1309430:three_prime_UTR
AGATGCTACTTGTTTGGTTA+AGG 0.350748 8_4:-5887886 Msa1309430:three_prime_UTR
CGAAACCCTAAATTTCTTTG+TGG 0.355378 8_4:+5892854 None:intergenic
CTATTTATAGCATTATATTT+GGG 0.356269 8_4:-5888148 Msa1309430:three_prime_UTR
TTAAGAAGATATTGCTCGTT+AGG 0.359179 8_4:-5887023 Msa1309430:three_prime_UTR
TCTGCAGCAACTCTACTTCT+TGG 0.363608 8_4:+5889464 None:intergenic
TGAAAGACGCCCAACTTATA+GGG 0.364958 8_4:-5889420 Msa1309430:CDS
AAAGAGATGTTTAGTTACTT+TGG 0.370338 8_4:-5887804 Msa1309430:three_prime_UTR
TCACTGGGCGTGGGTTATTA+CGG 0.372222 8_4:-5886854 Msa1309430:three_prime_UTR
TGTTAGCTAACATACCTATA+TGG 0.373043 8_4:-5886752 Msa1309430:three_prime_UTR
TACATGGGCAGCGGTGGTTC+GGG 0.376852 8_4:-5888454 Msa1309430:CDS
AAGAATTTGAAGTATTTGTT+GGG 0.376985 8_4:-5891378 Msa1309430:CDS
TCTGCAAATGAAACCTTTGC+AGG 0.379216 8_4:+5890696 None:intergenic
AAAGAATTTGAAGTATTTGT+TGG 0.379388 8_4:-5891379 Msa1309430:CDS
TCATATTCATCAATGTATTC+TGG 0.380188 8_4:-5888502 Msa1309430:CDS
CTCAACATTGCTCAGAAATA+GGG 0.381387 8_4:+5886969 None:intergenic
AGCAGTGTGAAGAGAGATTA+TGG 0.381697 8_4:-5889509 Msa1309430:CDS
GAACCTCTCTTTGGCGTCTT+CGG 0.383318 8_4:+5892809 None:intergenic
TCGCGTGGGGTAAGAGGAAT+TGG 0.383971 8_4:-5889752 Msa1309430:CDS
AATTTAATTAATATATTCAC+TGG 0.386689 8_4:-5886870 Msa1309430:three_prime_UTR
ACTCAAGACAACCAACGATA+TGG 0.390525 8_4:+5887109 None:intergenic
GATTAAAGGTGCAATCGAAC+GGG 0.391043 8_4:+5886544 None:intergenic
TTCTCGTCGCGTGGGGTAAG+AGG 0.394358 8_4:-5889758 Msa1309430:CDS
TGTTTGCTTTGCTGTACTGC+AGG 0.395507 8_4:-5886797 Msa1309430:three_prime_UTR
CATAATAAATTGGCTGCAAT+AGG 0.395636 8_4:-5888233 Msa1309430:three_prime_UTR
CTGTCCAAATGAAATGGTAT+TGG 0.397342 8_4:+5887922 None:intergenic
TGAAAATAAAGTAGCAGAAA+AGG 0.404059 8_4:-5887351 Msa1309430:three_prime_UTR
ATCACCGTCTTCTCTTCAAC+AGG 0.406089 8_4:+5892701 None:intergenic
CAACTCCCGACCCACATTGT+TGG 0.407711 8_4:-5887169 Msa1309430:three_prime_UTR
GACAGTGATACCCTCTATTT+GGG 0.407780 8_4:-5891051 Msa1309430:CDS
TCAAGCTAGGTAGGGTGGGG+GGG 0.409790 8_4:+5887298 None:intergenic
ATAGCTTTATCTTCAACAAC+AGG 0.413355 8_4:+5892611 None:intergenic
ATCAAGCTAGGTAGGGTGGG+GGG 0.414623 8_4:+5887297 None:intergenic
CAGAAGAGGGATGTTACGTT+TGG 0.419497 8_4:-5890729 Msa1309430:CDS
TGCATATGTTTCCCAAATAG+AGG 0.423070 8_4:+5891040 None:intergenic
AATAATTACTATGCGAAATC+GGG 0.424824 8_4:+5887476 None:intergenic
TCTGGTAGGGGCACGGGTGG+CGG 0.427281 8_4:-5888484 Msa1309430:CDS
TCACAGTACGGTGATGCTTA+TGG 0.427536 8_4:-5888987 Msa1309430:CDS
GGAAGATCTAGTCTTGGATA+TGG 0.430356 8_4:-5888863 Msa1309430:CDS
GAAGTCGTGCTCCGCCAATC+AGG 0.430648 8_4:-5889730 Msa1309430:CDS
TTAATTAAATTATTAAATGC+AGG 0.434111 8_4:+5886882 None:intergenic
GCAAATGAACCAACATAAAT+CGG 0.435326 8_4:-5887259 Msa1309430:three_prime_UTR
GAGGTGGCCTCTCATACCTT+TGG 0.437240 8_4:+5889306 None:intergenic
AGCTTGATTTAGAAAAGCTC+GGG 0.442733 8_4:-5887282 Msa1309430:three_prime_UTR
CTACCCGCTGAACCTCTCTT+TGG 0.444963 8_4:+5892800 None:intergenic
GGGTGGCGGTAGCAGTTACA+TGG 0.445852 8_4:-5888470 Msa1309430:CDS
ATTAATATATTCACTGGGCG+TGG 0.447220 8_4:-5886864 Msa1309430:three_prime_UTR
GACAACCAACGATATGGTTC+GGG 0.447264 8_4:+5887115 None:intergenic
AGACAACCAACGATATGGTT+CGG 0.450861 8_4:+5887114 None:intergenic
CGTTCATATATGCATATGAA+TGG 0.451547 8_4:-5886691 Msa1309430:three_prime_UTR
CATGTCAATTCAAGCTATCT+CGG 0.454846 8_4:-5888104 Msa1309430:three_prime_UTR
CTTCAGTAGCATCCTTGTCT+AGG 0.455597 8_4:+5891353 None:intergenic
GTGAACATTTATATCCATAT+AGG 0.457194 8_4:+5886738 None:intergenic
TGATGAGAAGGAAATTGAAC+AGG 0.459626 8_4:-5891620 Msa1309430:CDS
GGTAGTGGCCTACTTCTAAC+TGG 0.460415 8_4:+5889668 None:intergenic
ACTCCAATCGAGCTCTTGAT+TGG 0.460826 8_4:+5889030 None:intergenic
TCTGCTGAATGTATCAAAGT+TGG 0.463094 8_4:-5887847 Msa1309430:three_prime_UTR
GCTCGATTGGAGTATGACTA+TGG 0.463175 8_4:-5889020 Msa1309430:CDS
TGATGCACTTCCTCCTTCAT+GGG 0.463181 8_4:-5890174 Msa1309430:CDS
ATGTATTCTGGTAGGGGCAC+GGG 0.463809 8_4:-5888490 Msa1309430:CDS
TGGTCTCTGTCCAAATGAAA+TGG 0.464020 8_4:+5887916 None:intergenic
GATCTAGCTGGAGGAGGTAG+TGG 0.465085 8_4:+5889653 None:intergenic
AGCATTACTGGTACAGAATT+GGG 0.466603 8_4:-5890008 Msa1309430:CDS
AGTCGGCAGGGCATGAGTTA+TGG 0.470717 8_4:-5888788 Msa1309430:CDS
CAACAATGTGGGTCGGGAGT+TGG 0.472402 8_4:+5887170 None:intergenic
GGTTCGGGATCTTATTATTG+AGG 0.473492 8_4:-5888439 Msa1309430:intron
TTCAGGCCAAAGTGAGGGCT+AGG 0.475005 8_4:-5889901 Msa1309430:intron
AAATCAAGCTAGGTAGGGTG+GGG 0.475225 8_4:+5887295 None:intergenic
ATTGACAAAGAAATCACAAA+TGG 0.476354 8_4:-5887234 Msa1309430:three_prime_UTR
GCTGCTCGTAGAAAGGACTA+TGG 0.479913 8_4:-5890077 Msa1309430:CDS
GAGTATGAACCTGAGGAGTA+TGG 0.481139 8_4:-5891655 Msa1309430:CDS
ATGTGGTGTTACTCCGAGTC+AGG 0.485653 8_4:-5891073 Msa1309430:CDS
TTGGGGTTGTGACTGAGGTC+AGG 0.486683 8_4:-5891303 Msa1309430:CDS
AGCTATCTCGGGTCTTCTCT+AGG 0.487176 8_4:-5888092 Msa1309430:three_prime_UTR
GGTGGATAATCCCTATAAGT+TGG 0.487528 8_4:+5889410 None:intergenic
TTCATCAATGTATTCTGGTA+GGG 0.489027 8_4:-5888497 Msa1309430:CDS
TAACATTATCCACCCACAAA+TGG 0.489703 8_4:+5887961 None:intergenic
ATTATCTTGCAGTCCACCTC+AGG 0.491057 8_4:+5887550 None:intergenic
TTTCATATTCACTTGAGTGA+TGG 0.491336 8_4:+5887369 None:intergenic
TGGGGTGTATAGCAGTCGGC+AGG 0.491775 8_4:-5888801 Msa1309430:CDS
AAACTATGCAGGTTACTAGA+TGG 0.492265 8_4:+5887499 None:intergenic
GGGCGTCCTTCACGATAACT+TGG 0.494376 8_4:+5889263 None:intergenic
CCCCGTAGTTTCTCGTCGCG+TGG 0.495353 8_4:-5889767 Msa1309430:CDS
GACAACCAACAATGTGGGTC+GGG 0.497247 8_4:+5887164 None:intergenic
GGTGATTGAAGAAGAGATCA+AGG 0.499484 8_4:-5892684 Msa1309430:CDS
CATGCCAGCTGCTCGTAGAA+AGG 0.501010 8_4:-5890084 Msa1309430:CDS
GGCATGTATTCATCAAGTTA+TGG 0.501599 8_4:-5888650 Msa1309430:CDS
TAGCTTGATTTAGAAAAGCT+CGG 0.505512 8_4:-5887283 Msa1309430:three_prime_UTR
AAATGTTGAGGATATAACTT+TGG 0.505813 8_4:-5890844 Msa1309430:CDS
GTGGATAATCCCTATAAGTT+GGG 0.506076 8_4:+5889411 None:intergenic
TTGATTTATGATACCATTTG+TGG 0.506608 8_4:-5887974 Msa1309430:three_prime_UTR
CTTCTATCATAAGATCTAGC+TGG 0.506659 8_4:+5889641 None:intergenic
TTAGCATCTTCTACAGCCTC+AGG 0.507277 8_4:+5892569 None:intergenic
AGATGGTCATGATGAAATTG+AGG 0.507610 8_4:-5891512 Msa1309430:CDS
TGTCTATACCAGTTAGAAGT+AGG 0.507727 8_4:-5889676 Msa1309430:CDS
CTTTAGCTTCTGCATTGTAG+TGG 0.508113 8_4:-5887398 Msa1309430:three_prime_UTR
ATTCATCAATGTATTCTGGT+AGG 0.509049 8_4:-5888498 Msa1309430:CDS
CGTGGAAAACATGTTGGTCG+TGG 0.512930 8_4:-5889854 Msa1309430:CDS
TAAATCAAGCTAGGTAGGGT+GGG 0.514078 8_4:+5887294 None:intergenic
GAACTGATAATATTTGCTGC+TGG 0.515056 8_4:-5887599 Msa1309430:three_prime_UTR
ACAAATGGTATCATAAATCA+AGG 0.517968 8_4:+5887976 None:intergenic
AGGCCACTTCAGAGAGGCCG+TGG 0.518391 8_4:-5889872 Msa1309430:CDS
TTGAAAAGATTGAGCTTGCA+AGG 0.519002 8_4:-5890109 Msa1309430:CDS
ATGAATACACTATTTATGGT+AGG 0.519124 8_4:+5887077 None:intergenic
ACGATAACTTGGATGGGAAG+GGG 0.520335 8_4:+5889274 None:intergenic
TGTCAATGACCGATTTATGT+TGG 0.520554 8_4:+5887250 None:intergenic
TAGTCCTTTCTACGAGCAGC+TGG 0.522172 8_4:+5890080 None:intergenic
TCGCCAATCAAGAGCTCGAT+TGG 0.522669 8_4:-5889033 Msa1309430:CDS
CACGATAACTTGGATGGGAA+GGG 0.522951 8_4:+5889273 None:intergenic
TTGCAGCCAATTTATTATGT+CGG 0.523352 8_4:+5888237 None:intergenic
GTTTGCTTTGCTGTACTGCA+GGG 0.523702 8_4:-5886796 Msa1309430:three_prime_UTR
GGCGGTGATTACGTTTCTCG+TGG 0.524345 8_4:-5888629 Msa1309430:CDS
CATGGGATGAAGATTATGTC+CGG 0.524547 8_4:-5890157 Msa1309430:CDS
TTAATATATTCACTGGGCGT+GGG 0.524594 8_4:-5886863 Msa1309430:three_prime_UTR
AAGAGAGGTTCAGCGGGTAG+TGG 0.526935 8_4:-5892797 Msa1309430:CDS
GGATTATCTTCTTCCACCAC+AGG 0.529137 8_4:+5892632 None:intergenic
CCCCACGCGACGAGAAACTA+CGG 0.529221 8_4:+5889765 None:intergenic
CCTCTCTTTGGCGTCTTCGG+AGG 0.529474 8_4:+5892812 None:intergenic
GACGAGAAACTACGGGGTGC+AGG 0.529835 8_4:+5889773 None:intergenic
TGATGAAATTGAGGGAGAAG+AGG 0.531641 8_4:-5891503 Msa1309430:CDS
TGATTTATGATACCATTTGT+GGG 0.531763 8_4:-5887973 Msa1309430:three_prime_UTR
TTCCTCCCGCTCAGATGCAA+TGG 0.532515 8_4:-5890769 Msa1309430:CDS
AATGTATTCTGGTAGGGGCA+CGG 0.532761 8_4:-5888491 Msa1309430:CDS
TCATATAGTATACATCTTGA+AGG 0.532816 8_4:-5887058 Msa1309430:three_prime_UTR
ATGTCAATTCAAGCTATCTC+GGG 0.533625 8_4:-5888103 Msa1309430:three_prime_UTR
TGATTAAAGGTGCAATCGAA+CGG 0.534453 8_4:+5886543 None:intergenic
GTCCTTCACGATAACTTGGA+TGG 0.535270 8_4:+5889267 None:intergenic
TGGGTTATTACGGACTGACT+TGG 0.535832 8_4:-5886844 Msa1309430:three_prime_UTR
CTAAATCAAGCTAGGTAGGG+TGG 0.535850 8_4:+5887293 None:intergenic
AATCAAGCTAGGTAGGGTGG+GGG 0.536002 8_4:+5887296 None:intergenic
TCTAGTCTTGGATATGGTAG+TGG 0.536113 8_4:-5888857 Msa1309430:CDS
GAAGGAAATTGAACAGGAAG+AGG 0.536425 8_4:-5891614 Msa1309430:CDS
TGAGGTGGGAGATGAAGTTG+AGG 0.536948 8_4:-5891587 Msa1309430:CDS
TTTCCACGGCCTCTCTGAAG+TGG 0.538452 8_4:+5889869 None:intergenic
ATCTCGGGTCTTCTCTAGGT+GGG 0.538541 8_4:-5888088 Msa1309430:three_prime_UTR
GGTGGCAGTGCTTCACAGTA+CGG 0.540610 8_4:-5888999 Msa1309430:CDS
TTTGACAGAAGATGAAGAGG+AGG 0.540760 8_4:-5891740 Msa1309430:intron
ATAACATCCATAAGCTTCAA+AGG 0.541184 8_4:+5888203 None:intergenic
TCCTTCACGATAACTTGGAT+GGG 0.541440 8_4:+5889268 None:intergenic
TGACCGTGAGCGTGCGGAGA+TGG 0.541802 8_4:-5891455 Msa1309430:CDS
ACAAGTAGCATCTCTAGCCT+TGG 0.543111 8_4:+5887896 None:intergenic
GGCATCCATTGCATCTGAGC+GGG 0.544260 8_4:+5890764 None:intergenic
AAGTGAGGGCTAGGTTATCA+AGG 0.544468 8_4:-5889892 Msa1309430:CDS
TCATCCACGTAACCTCTCCT+AGG 0.544554 8_4:+5889338 None:intergenic
TGAATACACTATTTATGGTA+GGG 0.545218 8_4:+5887078 None:intergenic
CTAGCACTGATAGACCTGAT+TGG 0.546036 8_4:+5889716 None:intergenic
ATATGGTTCGGGAGTTGGAA+AGG 0.546047 8_4:+5887126 None:intergenic
ACGCCAAAGAGAGGTTCAGC+GGG 0.548771 8_4:-5892803 Msa1309430:CDS
TTTAGCTTCTGCATTGTAGT+GGG 0.549715 8_4:-5887397 Msa1309430:three_prime_UTR
GCAGCAACTCTACTTCTTGG+AGG 0.550856 8_4:+5889467 None:intergenic
GCGAAATCGGGAAACTATGC+AGG 0.552820 8_4:+5887488 None:intergenic
GCAGGTCGGCTGCTCCAAGA+AGG 0.553373 8_4:+5889791 None:intergenic
CCTTTAAGAGACTGCAGAAG+AGG 0.553892 8_4:-5890743 Msa1309430:CDS
TGATAACCTAGCCCTCACTT+TGG 0.554695 8_4:+5889895 None:intergenic
AGCGGGTAGTGGTTCAAAGA+GGG 0.555066 8_4:-5892786 Msa1309430:CDS
GCATATGTTTCCCAAATAGA+GGG 0.556114 8_4:+5891041 None:intergenic
CGATAACTTGGATGGGAAGG+GGG 0.557684 8_4:+5889275 None:intergenic
TTTCTAAATCAAGCTAGGTA+GGG 0.557945 8_4:+5887290 None:intergenic
TAAAATGAATACTTATGCAT+AGG 0.558067 8_4:+5886922 None:intergenic
GGGGACTATCGCCCGAGTCG+CGG 0.559741 8_4:-5889833 Msa1309430:CDS
GTGTTGTAGGATTTGTGACA+TGG 0.559819 8_4:-5887651 Msa1309430:three_prime_UTR
ACGGTGATGCTTATGGTGAT+AGG 0.560365 8_4:-5888980 Msa1309430:intron
ACAAGGGATTTGCATTCTTG+CGG 0.561118 8_4:-5891252 Msa1309430:CDS
CAGCACGAGCAGTACTTCTA+GGG 0.561773 8_4:+5889363 None:intergenic
TCACGATAACTTGGATGGGA+AGG 0.562072 8_4:+5889272 None:intergenic
TCATCAATGTATTCTGGTAG+GGG 0.563889 8_4:-5888496 Msa1309430:CDS
TCTTATGATAGAAGACCAGC+TGG 0.564284 8_4:-5889632 Msa1309430:intron
ACAGGAAGAGGGACATGAGG+TGG 0.565462 8_4:-5891602 Msa1309430:CDS
TATGGTTCGGGAGTTGGAAA+GGG 0.565701 8_4:+5887127 None:intergenic
AGACGAGCGTCTAGATTTGG+AGG 0.566469 8_4:-5891689 Msa1309430:CDS
TTGCTGCAGATTATGGATCA+AGG 0.567085 8_4:-5889451 Msa1309430:CDS
GGCGAGGAAGAAGTCGAAGA+TGG 0.567156 8_4:-5891529 Msa1309430:CDS
AGGAGAGGTTACGTGGATGA+TGG 0.568734 8_4:-5889335 Msa1309430:CDS
GGGTGATGAAATTATGTCAC+AGG 0.569604 8_4:-5890658 Msa1309430:intron
AGAATTTGAAGTATTTGTTG+GGG 0.569779 8_4:-5891377 Msa1309430:CDS
GTGGAAAACATGTTGGTCGT+GGG 0.572181 8_4:-5889853 Msa1309430:CDS
AGCAGCATCGTGTGAGCCAA+AGG 0.572202 8_4:+5890046 None:intergenic
TATGGCGGTAATGATGTTGG+AGG 0.573247 8_4:-5888671 Msa1309430:CDS
TCAACCCCACCATACTCCTC+AGG 0.573263 8_4:+5891646 None:intergenic
CAACTCCCGAACCATATCGT+TGG 0.573646 8_4:-5887120 Msa1309430:three_prime_UTR
GTTCCTGTGATGTAGGTTGG+TGG 0.574215 8_4:-5888529 Msa1309430:intron
GATGGTCATGATGAAATTGA+GGG 0.574247 8_4:-5891511 Msa1309430:CDS
TGCAGAAGCTAAAGATTCTG+TGG 0.576513 8_4:+5887407 None:intergenic
TGGAGTTGATAAGCCTGCAA+AGG 0.576604 8_4:-5890709 Msa1309430:CDS
AGAAGAGAATCTCGTTGTTG+AGG 0.578538 8_4:-5892660 Msa1309430:CDS
ATTCTTGCGGTTTGAAAATG+TGG 0.580185 8_4:-5891239 Msa1309430:CDS
TATTCTGGTAGGGGCACGGG+TGG 0.580301 8_4:-5888487 Msa1309430:CDS
AGCAGTTACATGGGCAGCGG+TGG 0.581899 8_4:-5888460 Msa1309430:CDS
GGACTCAAGTTAGTGAGCGA+TGG 0.582663 8_4:-5888033 Msa1309430:three_prime_UTR
CTTCTTTCAGGCCAAAGTGA+GGG 0.583789 8_4:-5889906 Msa1309430:intron
TCTTCTTTCAGGCCAAAGTG+AGG 0.584613 8_4:-5889907 Msa1309430:intron
ATAAGTTGGGCGTCTTTCAG+AGG 0.585266 8_4:+5889424 None:intergenic
TCTTATGGCGGTAATGATGT+TGG 0.585997 8_4:-5888674 Msa1309430:CDS
GGTAGCAGTTACATGGGCAG+CGG 0.586041 8_4:-5888463 Msa1309430:CDS
AGTATACATCTTGAAGGAGG+AGG 0.586205 8_4:-5887052 Msa1309430:three_prime_UTR
GCGTGCGGAGATGGCTGATG+TGG 0.586432 8_4:-5891446 Msa1309430:CDS
CTTTAAGAGACTGCAGAAGA+GGG 0.587293 8_4:-5890742 Msa1309430:CDS
ATTCCAAGAATGCAAATCCA+CGG 0.588526 8_4:+5890793 None:intergenic
ATTATTGCAGATCCGCGACT+CGG 0.588971 8_4:+5889821 None:intergenic
TGAATGTACTTCATGCACCC+TGG 0.589383 8_4:-5887326 Msa1309430:three_prime_UTR
ATGAACCTGAGGAGTATGGT+GGG 0.592467 8_4:-5891651 Msa1309430:CDS
CTAACTGGTATAGACATGAC+AGG 0.592654 8_4:+5889683 None:intergenic
TTCCGATCAGGCTCTTATGG+CGG 0.592662 8_4:-5888686 Msa1309430:intron
TCATAAGATCTAGCTGGAGG+AGG 0.592974 8_4:+5889647 None:intergenic
TTATGGAGTTACAAATGTTG+AGG 0.593298 8_4:-5890856 Msa1309430:CDS
GCAACTCTACTTCTTGGAGG+TGG 0.594233 8_4:+5889470 None:intergenic
TACTCCTCAGGTTCATACTC+AGG 0.594399 8_4:+5891658 None:intergenic
ATTTAATTAATATATTCACT+GGG 0.594789 8_4:-5886869 Msa1309430:three_prime_UTR
CACATGGGGTGTATAGCAGT+CGG 0.596161 8_4:-5888805 Msa1309430:CDS
CGGCAGGGCATGAGTTATGG+TGG 0.596513 8_4:-5888785 Msa1309430:CDS
AGGGTATCACTGTCCTGACT+CGG 0.597119 8_4:+5891060 None:intergenic
TTATTGCAGATCCGCGACTC+GGG 0.598224 8_4:+5889822 None:intergenic
CTTGACCAGAAATAGAACTT+CGG 0.598989 8_4:+5888831 None:intergenic
ATTTCTGGTCAAGATTCACA+TGG 0.599253 8_4:-5888821 Msa1309430:CDS
ATCGTGAAGTTGTGAAGGAG+AGG 0.601698 8_4:-5891411 Msa1309430:CDS
TTGTGAAGGAGAGGCGAAAG+CGG 0.603327 8_4:-5891402 Msa1309430:CDS
CAGCGGGTAGTGGTTCAAAG+AGG 0.603447 8_4:-5892787 Msa1309430:CDS
TGGGAAACATATGCAAAACA+TGG 0.603494 8_4:-5891032 Msa1309430:CDS
GGAACATCGTGAAGTTGTGA+AGG 0.603844 8_4:-5891416 Msa1309430:CDS
GAAGAACCTGAAGAAAATGT+TGG 0.605476 8_4:-5891565 Msa1309430:CDS
TGATTGGCGAGCACCAGTAT+CGG 0.605757 8_4:+5889046 None:intergenic
AGAGTCGGAAGATCTAGTCT+TGG 0.608797 8_4:-5888869 Msa1309430:CDS
CCGTAGTTTCTCGTCGCGTG+GGG 0.609247 8_4:-5889765 Msa1309430:CDS
AGACAACCAACAATGTGGGT+CGG 0.609812 8_4:+5887163 None:intergenic
AGAGGCCGTGGAAAACATGT+TGG 0.610472 8_4:-5889860 Msa1309430:CDS
CCTCCGAAGACGCCAAAGAG+AGG 0.610557 8_4:-5892812 Msa1309430:CDS
TGGATGATGGTTACAGCCAA+AGG 0.611800 8_4:-5889322 Msa1309430:CDS
CAGGAAGAGGGACATGAGGT+GGG 0.612912 8_4:-5891601 Msa1309430:CDS
CAGATTAATGGAAAACAATG+TGG 0.614039 8_4:-5891090 Msa1309430:CDS
ATCCATTGCATCTGAGCGGG+AGG 0.615124 8_4:+5890767 None:intergenic
TACTGAAGATGATCTGAGGA+AGG 0.616779 8_4:-5891338 Msa1309430:CDS
ACATAATCTTCATCCCATGA+AGG 0.617754 8_4:+5890161 None:intergenic
TCCCATCCAAGTTATCGTGA+AGG 0.617871 8_4:-5889269 Msa1309430:CDS
TGAACCTGTTGAAGAGAAGA+CGG 0.620053 8_4:-5892705 Msa1309430:CDS
GCGGGTAGTGGTTCAAAGAG+GGG 0.620078 8_4:-5892785 Msa1309430:CDS
TATCTCGGGTCTTCTCTAGG+TGG 0.620442 8_4:-5888089 Msa1309430:three_prime_UTR
TTTCATTTGGACAGAGACCA+AGG 0.620910 8_4:-5887913 Msa1309430:three_prime_UTR
GCACTGATAGACCTGATTGG+CGG 0.621354 8_4:+5889719 None:intergenic
TATGAATCAAATTGCTCCTG+AGG 0.621990 8_4:-5892585 Msa1309430:CDS
TGGGGTTGACTATGATGAGA+AGG 0.623447 8_4:-5891632 Msa1309430:CDS
TTTCTGGTCAAGATTCACAT+GGG 0.629433 8_4:-5888820 Msa1309430:CDS
AAGGAAATTGAACAGGAAGA+GGG 0.629624 8_4:-5891613 Msa1309430:CDS
CTCAAGACAACCAACAATGT+GGG 0.630768 8_4:+5887159 None:intergenic
GTGTGAAGAGAGATTATGGT+CGG 0.631539 8_4:-5889505 Msa1309430:CDS
AGAAACTACGGGGTGCAGGT+CGG 0.632474 8_4:+5889777 None:intergenic
GAAGCATGACCGTGAGCGTG+CGG 0.635366 8_4:-5891461 Msa1309430:CDS
ATTAAAGGTGCAATCGAACG+GGG 0.635393 8_4:+5886545 None:intergenic
TGAAGTTGGGGTTGTGACTG+AGG 0.635514 8_4:-5891308 Msa1309430:CDS
CAGGGCATGAGTTATGGTGG+AGG 0.638372 8_4:-5888782 Msa1309430:intron
AATTGGCTGCAATAGGATGA+CGG 0.638558 8_4:-5888226 Msa1309430:three_prime_UTR
GTTACAGCCAAAGGTATGAG+AGG 0.639419 8_4:-5889313 Msa1309430:CDS
GTACTGCTCGTGCTGCACCT+AGG 0.640481 8_4:-5889355 Msa1309430:CDS
AATGATAAAGGAACAAACCG+TGG 0.644326 8_4:-5890810 Msa1309430:CDS
ACTCAAGACAACCAACAATG+TGG 0.644646 8_4:+5887158 None:intergenic
TGGAAAACATGTTGGTCGTG+GGG 0.645687 8_4:-5889852 Msa1309430:CDS
GCGGATCTGCAATAATGTCA+AGG 0.645997 8_4:-5889814 Msa1309430:CDS
GATGGCTGATGTGGATGAAG+AGG 0.646717 8_4:-5891437 Msa1309430:CDS
CATATGCAAAACATGGACAA+AGG 0.647157 8_4:-5891025 Msa1309430:CDS
TGATCCTGAGTATGAACCTG+AGG 0.648209 8_4:-5891662 Msa1309430:CDS
GACGCCAAAGAGAGGTTCAG+CGG 0.648754 8_4:-5892804 Msa1309430:CDS
GCTCGTGCTGCACCTAGGAG+AGG 0.649097 8_4:-5889350 Msa1309430:CDS
ACTGGTACAGAATTGGGTGA+AGG 0.649153 8_4:-5890002 Msa1309430:CDS
ATGCTACTGAAGATGATCTG+AGG 0.650341 8_4:-5891342 Msa1309430:CDS
TATAGTATACATCTTGAAGG+AGG 0.651097 8_4:-5887055 Msa1309430:three_prime_UTR
TAATCTTCATCCCATGAAGG+AGG 0.656027 8_4:+5890164 None:intergenic
TGAACAGGAAGAGGGACATG+AGG 0.656320 8_4:-5891605 Msa1309430:CDS
GGGGTGTATAGCAGTCGGCA+GGG 0.660281 8_4:-5888800 Msa1309430:CDS
GGTGGCGGTAGCAGTTACAT+GGG 0.660439 8_4:-5888469 Msa1309430:CDS
TGCACCTAGGAGAGGTTACG+TGG 0.661010 8_4:-5889342 Msa1309430:CDS
GAATTTGAAGTATTTGTTGG+GGG 0.661371 8_4:-5891376 Msa1309430:CDS
CCTGAAGAAAATGTTGGTGA+AGG 0.663753 8_4:-5891559 Msa1309430:CDS
CTATCATAAGATCTAGCTGG+AGG 0.665556 8_4:+5889644 None:intergenic
TTCTGGTCAAGATTCACATG+GGG 0.667528 8_4:-5888819 Msa1309430:CDS
TATAGGGATTATCCACCTCG+TGG 0.670506 8_4:-5889404 Msa1309430:CDS
CCAGTATCGGCGTATCTTGG+GGG 0.678120 8_4:+5889059 None:intergenic
CGATTGGAGTATGACTATGG+TGG 0.680575 8_4:-5889017 Msa1309430:CDS
TATGAACCTGAGGAGTATGG+TGG 0.681041 8_4:-5891652 Msa1309430:CDS
GAGTAGTCAGATCCACGAGG+TGG 0.682031 8_4:+5889392 None:intergenic
TCTTCTGAAGAAATATGGCG+AGG 0.682225 8_4:-5890132 Msa1309430:CDS
GTGACATAATTTCATCACCC+GGG 0.686563 8_4:+5890661 None:intergenic
TGGTGAAGGTGATTCAGGCG+AGG 0.686633 8_4:-5891545 Msa1309430:CDS
ATGTATTCATCAAGTTATGG+CGG 0.691988 8_4:-5888647 Msa1309430:CDS
GGTAGTGGTTCAAAGAGGGG+TGG 0.693327 8_4:-5892782 Msa1309430:CDS
TTTATGATACCATTTGTGGG+TGG 0.694018 8_4:-5887970 Msa1309430:three_prime_UTR
TGTGACATAATTTCATCACC+CGG 0.700332 8_4:+5890660 None:intergenic
AGGCATCCATTGCATCTGAG+CGG 0.701954 8_4:+5890763 None:intergenic
GATAGAGAATCATAATCACG+AGG 0.709014 8_4:+5889242 None:intergenic
GCTTGATTTAGAAAAGCTCG+GGG 0.709373 8_4:-5887281 Msa1309430:three_prime_UTR
TAACTGGTATAGACATGACA+GGG 0.713524 8_4:+5889684 None:intergenic
AGGGGTGGCAGATTATCGAG+AGG 0.718242 8_4:-5892767 Msa1309430:CDS
GCAAAGCAAACAGAACAGTG+TGG 0.727441 8_4:+5886808 None:intergenic
ATAGAGAATCATAATCACGA+GGG 0.739313 8_4:+5889243 None:intergenic
TGAACCTGAGGAGTATGGTG+GGG 0.741917 8_4:-5891650 Msa1309430:CDS
TTATCAAGGCCACTTCAGAG+AGG 0.757296 8_4:-5889878 Msa1309430:CDS
TCAGAGTAGTCAGATCCACG+AGG 0.788482 8_4:+5889389 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAAAAATCTTACTTT+TGG + chr8_4:5886961-5886980 None:intergenic 10.0%
!!! AAAGTTAACTTTTTAAATTA+TGG - chr8_4:5887001-5887020 Msa1309430:three_prime_UTR 10.0%
!!! TTGATTTTTTTTTATATTTG+GGG - chr8_4:5887095-5887114 Msa1309430:three_prime_UTR 10.0%
!!! TTTTTGTATGAATTATTTTT+CGG - chr8_4:5887428-5887447 Msa1309430:three_prime_UTR 10.0%
!!! TTATTATGAATTTACTTTTA+AGG - chr8_4:5889169-5889188 Msa1309430:intron 10.0%
!!! TATTATGAATTTACTTTTAA+GGG - chr8_4:5889170-5889189 Msa1309430:intron 10.0%
!! TTAATTAAATTATTAAATGC+AGG + chr8_4:5892620-5892639 None:intergenic 10.0%
!! AATTTAATTAATATATTCAC+TGG - chr8_4:5892629-5892648 Msa1309430:CDS 10.0%
!! ATTTAATTAATATATTCACT+GGG - chr8_4:5892630-5892649 Msa1309430:CDS 10.0%
!!! TTAAATTGTTTATGGATTAT+TGG - chr8_4:5887122-5887141 Msa1309430:three_prime_UTR 15.0%
!!! TAAATTGTTTATGGATTATT+GGG - chr8_4:5887123-5887142 Msa1309430:three_prime_UTR 15.0%
!!! TATGGTAATTGTAATTTTTA+AGG - chr8_4:5887171-5887190 Msa1309430:three_prime_UTR 15.0%
!!! AAAAAAAATTGTTACTTTTG+TGG - chr8_4:5889118-5889137 Msa1309430:intron 15.0%
!!! ACTTTCATTTATTATTTCTT+AGG - chr8_4:5889920-5889939 Msa1309430:intron 15.0%
!! AAACATAATAAAAGTAAGTA+TGG + chr8_4:5890793-5890812 None:intergenic 15.0%
!! CTATTTATAGCATTATATTT+GGG - chr8_4:5891351-5891370 Msa1309430:CDS 15.0%
!!! ATTTTATTATTACATTCAAG+AGG - chr8_4:5892299-5892318 Msa1309430:intron 15.0%
!!! TTTTATTATTACATTCAAGA+GGG - chr8_4:5892300-5892319 Msa1309430:intron 15.0%
!!! TAAATTTTTGAGAGAGAATT+GGG + chr8_4:5886584-5886603 None:intergenic 20.0%
!! AATTCTCTCTCAAAAATTTA+GGG - chr8_4:5886584-5886603 Msa1309430:three_prime_UTR 20.0%
!!! AAATTGTTTATGGATTATTG+GGG - chr8_4:5887124-5887143 Msa1309430:three_prime_UTR 20.0%
!!! AAATTTTAAGGGTTTGAATA+TGG - chr8_4:5887153-5887172 Msa1309430:three_prime_UTR 20.0%
!!! AGTTTATATTGTTTTGTTGT+AGG - chr8_4:5887214-5887233 Msa1309430:three_prime_UTR 20.0%
!! TATAATTCATCATTAGATGA+AGG - chr8_4:5887288-5887307 Msa1309430:three_prime_UTR 20.0%
!!! AAAGAATTTGAAGTATTTGT+TGG - chr8_4:5888120-5888139 Msa1309430:three_prime_UTR 20.0%
!!! AAGAATTTGAAGTATTTGTT+GGG - chr8_4:5888121-5888140 Msa1309430:three_prime_UTR 20.0%
!!! TTTTTTGAAGGTTTTTTAAG+CGG - chr8_4:5888892-5888911 Msa1309430:intron 20.0%
!! AAAATTTGATCAGTAAAATG+AGG + chr8_4:5889277-5889296 None:intergenic 20.0%
!!! GATCAAATTTTTCAAATTTC+AGG - chr8_4:5889286-5889305 Msa1309430:CDS 20.0%
!! AAAATGTAAGAATGAATTAC+AGG + chr8_4:5890603-5890622 None:intergenic 20.0%
!! GCTATTTATAGCATTATATT+TGG - chr8_4:5891350-5891369 Msa1309430:CDS 20.0%
!!! AGTCAAAAGATGATTTTTTT+TGG - chr8_4:5891816-5891835 Msa1309430:intron 20.0%
!!! GTCAAAAGATGATTTTTTTT+GGG - chr8_4:5891817-5891836 Msa1309430:intron 20.0%
!! AAATAATTACTATGCGAAAT+CGG + chr8_4:5892027-5892046 None:intergenic 20.0%
!! CTATATGAATACACTATTTA+TGG + chr8_4:5892429-5892448 None:intergenic 20.0%
!! TAAAATGAATACTTATGCAT+AGG + chr8_4:5892580-5892599 None:intergenic 20.0%
!!! CTAAATTTTTGAGAGAGAAT+TGG + chr8_4:5886585-5886604 None:intergenic 25.0%
! CAATTCTCTCTCAAAAATTT+AGG - chr8_4:5886583-5886602 Msa1309430:three_prime_UTR 25.0%
!!! TTGGGGTTTTTGAAATTTTA+AGG - chr8_4:5887141-5887160 Msa1309430:three_prime_UTR 25.0%
!!! TGGGGTTTTTGAAATTTTAA+GGG - chr8_4:5887142-5887161 Msa1309430:three_prime_UTR 25.0%
!!! TATTGTTTTGTTGTAGGAAA+AGG - chr8_4:5887220-5887239 Msa1309430:three_prime_UTR 25.0%
!! TGTTATCGCTTCTTTTATTA+TGG - chr8_4:5887342-5887361 Msa1309430:three_prime_UTR 25.0%
! TTATGTGTTTGTGTTATGTT+TGG - chr8_4:5887456-5887475 Msa1309430:three_prime_UTR 25.0%
!!! AATCATGAAGTGGTTTTAAA+TGG - chr8_4:5887486-5887505 Msa1309430:three_prime_UTR 25.0%
!!! ATCATGAAGTGGTTTTAAAT+GGG - chr8_4:5887487-5887506 Msa1309430:three_prime_UTR 25.0%
!!! AAAGTTAAGTCTATTTTGAC+TGG - chr8_4:5887712-5887731 Msa1309430:three_prime_UTR 25.0%
!!! AAGTTAAGTCTATTTTGACT+GGG - chr8_4:5887713-5887732 Msa1309430:three_prime_UTR 25.0%
! AAAATAGTACAGGTTTCAAT+TGG + chr8_4:5887740-5887759 None:intergenic 25.0%
!! AGAATTTGAAGTATTTGTTG+GGG - chr8_4:5888122-5888141 Msa1309430:three_prime_UTR 25.0%
! AAATGTTGAGGATATAACTT+TGG - chr8_4:5888655-5888674 Msa1309430:CDS 25.0%
! GTAGAAGATTCTAATGATAA+AGG - chr8_4:5888677-5888696 Msa1309430:CDS 25.0%
!! TTTTCTGAATAGAAATTCCT+TGG - chr8_4:5888867-5888886 Msa1309430:CDS 25.0%
! TTTCTGAATAGAAATTCCTT+GGG - chr8_4:5888868-5888887 Msa1309430:CDS 25.0%
! TGTAAAAACTGGAAAATTGT+GGG + chr8_4:5889063-5889082 None:intergenic 25.0%
! ATGTAAAAACTGGAAAATTG+TGG + chr8_4:5889064-5889083 None:intergenic 25.0%
! TTTCTCATCCTAAAATATAC+CGG + chr8_4:5889212-5889231 None:intergenic 25.0%
! TGAATTACAGGACAAAAAAT+AGG + chr8_4:5890591-5890610 None:intergenic 25.0%
!!! TACATTTTGATTTGTAGAGT+CGG - chr8_4:5890615-5890634 Msa1309430:intron 25.0%
!! TTTATTATGTTTTTCCGATC+AGG - chr8_4:5890801-5890820 Msa1309430:CDS 25.0%
! TCATATTCATCAATGTATTC+TGG - chr8_4:5890997-5891016 Msa1309430:intron 25.0%
!! TATAAGTGGATGTATTTTTC+TGG - chr8_4:5891142-5891161 Msa1309430:intron 25.0%
! ATGTTATGAAGCTTACAATT+TGG - chr8_4:5891312-5891331 Msa1309430:CDS 25.0%
! GTTATTGAATTTGTGATGTA+TGG - chr8_4:5891445-5891464 Msa1309430:CDS 25.0%
! ACAAATGGTATCATAAATCA+AGG + chr8_4:5891526-5891545 None:intergenic 25.0%
! TTGATTTATGATACCATTTG+TGG - chr8_4:5891525-5891544 Msa1309430:CDS 25.0%
! TGATTTATGATACCATTTGT+GGG - chr8_4:5891526-5891545 Msa1309430:CDS 25.0%
! AAAGAGATGTTTAGTTACTT+TGG - chr8_4:5891695-5891714 Msa1309430:CDS 25.0%
! AGTAATAAGAATACTACTTC+AGG - chr8_4:5891784-5891803 Msa1309430:intron 25.0%
!!! ATCATGCTTTTTACTTTCTT+AGG + chr8_4:5891880-5891899 None:intergenic 25.0%
! AATAATTACTATGCGAAATC+GGG + chr8_4:5892026-5892045 None:intergenic 25.0%
! TGAAAATAAAGTAGCAGAAA+AGG - chr8_4:5892148-5892167 Msa1309430:intron 25.0%
! ATTGACAAAGAAATCACAAA+TGG - chr8_4:5892265-5892284 Msa1309430:intron 25.0%
! TGAATACACTATTTATGGTA+GGG + chr8_4:5892424-5892443 None:intergenic 25.0%
! ATGAATACACTATTTATGGT+AGG + chr8_4:5892425-5892444 None:intergenic 25.0%
! TCATATAGTATACATCTTGA+AGG - chr8_4:5892441-5892460 Msa1309430:intron 25.0%
!! ATTCATTTTATTGCATCTTG+TGG - chr8_4:5892590-5892609 Msa1309430:CDS 25.0%
! GTGAACATTTATATCCATAT+AGG + chr8_4:5892764-5892783 None:intergenic 25.0%
!!! GGTTTACTTCTAGTTTATTT+TGG - chr8_4:5892829-5892848 Msa1309430:exon 25.0%
!!! TTCTTTCAATTTGCTATCAT+TGG - chr8_4:5892854-5892873 Msa1309430:five_prime_UTR 25.0%
!! ATAGCTTTATCTTCAACAAC+AGG + chr8_4:5886891-5886910 None:intergenic 30.0%
TTAAATTATGGCGAAAAGTG+AGG - chr8_4:5887013-5887032 Msa1309430:three_prime_UTR 30.0%
TGAAATTATAGCGAAAAGTG+AGG - chr8_4:5887054-5887073 Msa1309430:three_prime_UTR 30.0%
GGGGTTGTTTAAATTGTTTA+TGG - chr8_4:5887114-5887133 Msa1309430:three_prime_UTR 30.0%
TATGGTTGTTGCAATTGAAT+AGG - chr8_4:5887360-5887379 Msa1309430:three_prime_UTR 30.0%
! ATGTTGTCAAATATTGGTTG+TGG - chr8_4:5887524-5887543 Msa1309430:three_prime_UTR 30.0%
! CATAGCAAAAGAAGGATTTT+AGG - chr8_4:5887599-5887618 Msa1309430:three_prime_UTR 30.0%
ATCCACAACAATGTTATCAA+TGG + chr8_4:5887632-5887651 None:intergenic 30.0%
CATTGTGCAATGATTGAATA+TGG - chr8_4:5887653-5887672 Msa1309430:three_prime_UTR 30.0%
CTTCTGTCAAAAAATAGTAC+AGG + chr8_4:5887750-5887769 None:intergenic 30.0%
!!! TTTTTTGACAGAAGATGAAG+AGG - chr8_4:5887756-5887775 Msa1309430:three_prime_UTR 30.0%
! GAATTTGAAGTATTTGTTGG+GGG - chr8_4:5888123-5888142 Msa1309430:three_prime_UTR 30.0%
TGACTTCTCAATAATAGAGT+AGG - chr8_4:5888332-5888351 Msa1309430:intron 30.0%
CAGATTAATGGAAAACAATG+TGG - chr8_4:5888409-5888428 Msa1309430:intron 30.0%
GCTGAATTTATGACTGTTAA+TGG - chr8_4:5888585-5888604 Msa1309430:intron 30.0%
TTATGGAGTTACAAATGTTG+AGG - chr8_4:5888643-5888662 Msa1309430:CDS 30.0%
!!! AATTCCTTGGGTTTTTTTGA+AGG - chr8_4:5888880-5888899 Msa1309430:intron 30.0%
AAAACCTTCAAAAAAACCCA+AGG + chr8_4:5888887-5888906 None:intergenic 30.0%
! AGTTTGAAATTGTAATCACG+TGG - chr8_4:5889027-5889046 Msa1309430:CDS 30.0%
! GTTTGAAATTGTAATCACGT+GGG - chr8_4:5889028-5889047 Msa1309430:CDS 30.0%
CATATTTCTTCAGAAGATTC+CGG + chr8_4:5889364-5889383 None:intergenic 30.0%
TAATGCTTTCATCTTCTTTC+AGG - chr8_4:5889581-5889600 Msa1309430:intron 30.0%
ATAGAGAATCATAATCACGA+GGG + chr8_4:5890259-5890278 None:intergenic 30.0%
TGCAGAAATAATACTAACCA+CGG + chr8_4:5890306-5890325 None:intergenic 30.0%
CAGGACAAAAAATAGGATTA+GGG + chr8_4:5890584-5890603 None:intergenic 30.0%
ACAGGACAAAAAATAGGATT+AGG + chr8_4:5890585-5890604 None:intergenic 30.0%
ATGTATTCATCAAGTTATGG+CGG - chr8_4:5890852-5890871 Msa1309430:CDS 30.0%
ATTCATCAATGTATTCTGGT+AGG - chr8_4:5891001-5891020 Msa1309430:intron 30.0%
TTCATCAATGTATTCTGGTA+GGG - chr8_4:5891002-5891021 Msa1309430:intron 30.0%
TGTGCTTTGTGTATTACATT+AGG - chr8_4:5891109-5891128 Msa1309430:intron 30.0%
!! AGATTTTGCTATACTCGAAA+TGG - chr8_4:5891165-5891184 Msa1309430:intron 30.0%
ACAGATCCGACATAATAAAT+TGG - chr8_4:5891256-5891275 Msa1309430:CDS 30.0%
TTGCAGCCAATTTATTATGT+CGG + chr8_4:5891265-5891284 None:intergenic 30.0%
CATAATAAATTGGCTGCAAT+AGG - chr8_4:5891266-5891285 Msa1309430:CDS 30.0%
ATAACATCCATAAGCTTCAA+AGG + chr8_4:5891299-5891318 None:intergenic 30.0%
CTTGTTTGGTTAAGGATTAA+TGG - chr8_4:5891621-5891640 Msa1309430:CDS 30.0%
!!! TGATTTTTTTTGGGATGTGT+TGG - chr8_4:5891826-5891845 Msa1309430:intron 30.0%
TTTCATATTCACTTGAGTGA+TGG + chr8_4:5892133-5892152 None:intergenic 30.0%
TTTCTAAATCAAGCTAGGTA+GGG + chr8_4:5892212-5892231 None:intergenic 30.0%
! TTTTCTAAATCAAGCTAGGT+AGG + chr8_4:5892213-5892232 None:intergenic 30.0%
TAGCTTGATTTAGAAAAGCT+CGG - chr8_4:5892216-5892235 Msa1309430:intron 30.0%
GCAAATGAACCAACATAAAT+CGG - chr8_4:5892240-5892259 Msa1309430:intron 30.0%
TATAGTATACATCTTGAAGG+AGG - chr8_4:5892444-5892463 Msa1309430:intron 30.0%
TTAAGAAGATATTGCTCGTT+AGG - chr8_4:5892476-5892495 Msa1309430:intron 30.0%
TGTTAGCTAACATACCTATA+TGG - chr8_4:5892747-5892766 Msa1309430:CDS 30.0%
CGTTCATATATGCATATGAA+TGG - chr8_4:5892808-5892827 Msa1309430:CDS 30.0%
TGCGATCCACAAAGAAATTT+AGG - chr8_4:5886639-5886658 Msa1309430:three_prime_UTR 35.0%
GCGATCCACAAAGAAATTTA+GGG - chr8_4:5886640-5886659 Msa1309430:three_prime_UTR 35.0%
CGAAACCCTAAATTTCTTTG+TGG + chr8_4:5886648-5886667 None:intergenic 35.0%
TATGAATCAAATTGCTCCTG+AGG - chr8_4:5886914-5886933 Msa1309430:three_prime_UTR 35.0%
AGCGATAACAGCTTACAAAA+AGG + chr8_4:5887332-5887351 None:intergenic 35.0%
TGGTGATATCAATCATGAAG+TGG - chr8_4:5887476-5887495 Msa1309430:three_prime_UTR 35.0%
!!! GGTTTTAAATGGGAATCATG+TGG - chr8_4:5887497-5887516 Msa1309430:three_prime_UTR 35.0%
GGATCGATGTTGTCAAATAT+TGG - chr8_4:5887518-5887537 Msa1309430:three_prime_UTR 35.0%
! ATATTGGTTGTGGCAGATTT+CGG - chr8_4:5887534-5887553 Msa1309430:three_prime_UTR 35.0%
CACAACAATGTTATCAATGG+CGG + chr8_4:5887629-5887648 None:intergenic 35.0%
TGATGAGAAGGAAATTGAAC+AGG - chr8_4:5887879-5887898 Msa1309430:three_prime_UTR 35.0%
AAGGAAATTGAACAGGAAGA+GGG - chr8_4:5887886-5887905 Msa1309430:three_prime_UTR 35.0%
GAAGAACCTGAAGAAAATGT+TGG - chr8_4:5887934-5887953 Msa1309430:three_prime_UTR 35.0%
AGATGGTCATGATGAAATTG+AGG - chr8_4:5887987-5888006 Msa1309430:three_prime_UTR 35.0%
GATGGTCATGATGAAATTGA+GGG - chr8_4:5887988-5888007 Msa1309430:three_prime_UTR 35.0%
TCCTCAGACAAAAAAGAACA+AGG - chr8_4:5888230-5888249 Msa1309430:three_prime_UTR 35.0%
CCTCAGACAAAAAAGAACAA+GGG - chr8_4:5888231-5888250 Msa1309430:three_prime_UTR 35.0%
ATTCTTGCGGTTTGAAAATG+TGG - chr8_4:5888260-5888279 Msa1309430:intron 35.0%
AGAAGTCAAAGATTACCACT+GGG + chr8_4:5888320-5888339 None:intergenic 35.0%
TCGCTGCAATTTCAGATTAA+TGG - chr8_4:5888397-5888416 Msa1309430:intron 35.0%
GCATATGTTTCCCAAATAGA+GGG + chr8_4:5888461-5888480 None:intergenic 35.0%
TGCATATGTTTCCCAAATAG+AGG + chr8_4:5888462-5888481 None:intergenic 35.0%
TGGGAAACATATGCAAAACA+TGG - chr8_4:5888467-5888486 Msa1309430:CDS 35.0%
CATATGCAAAACATGGACAA+AGG - chr8_4:5888474-5888493 Msa1309430:CDS 35.0%
! AGCTGTAAGTCTAGTTGTTT+TGG - chr8_4:5888498-5888517 Msa1309430:CDS 35.0%
! TCAATGAAGGTGCAAAAAAC+AGG + chr8_4:5888525-5888544 None:intergenic 35.0%
TTGCACCTTCATTGAATTGT+TGG - chr8_4:5888530-5888549 Msa1309430:intron 35.0%
TGCACCTTCATTGAATTGTT+GGG - chr8_4:5888531-5888550 Msa1309430:intron 35.0%
ACAACCCAACAATTCAATGA+AGG + chr8_4:5888538-5888557 None:intergenic 35.0%
TCATAAATTCAGCAGAGTTC+AGG + chr8_4:5888578-5888597 None:intergenic 35.0%
ATGACTGTTAATGGAACTTC+TGG - chr8_4:5888594-5888613 Msa1309430:intron 35.0%
! AAGGAGAAGTTGAAGCATTA+TGG - chr8_4:5888626-5888645 Msa1309430:CDS 35.0%
AATGATAAAGGAACAAACCG+TGG - chr8_4:5888689-5888708 Msa1309430:intron 35.0%
ATTCCAAGAATGCAAATCCA+CGG + chr8_4:5888709-5888728 None:intergenic 35.0%
! TGCAGATTCTTTTATTGACC+CGG - chr8_4:5888820-5888839 Msa1309430:CDS 35.0%
TGTGACATAATTTCATCACC+CGG + chr8_4:5888842-5888861 None:intergenic 35.0%
CAAAATTAACCAACCACTGA+TGG + chr8_4:5888957-5888976 None:intergenic 35.0%
!! CAGTGGTTGGTTAATTTTGT+TGG - chr8_4:5888958-5888977 Msa1309430:intron 35.0%
CACATCACGAATGTAAAAAC+TGG + chr8_4:5889074-5889093 None:intergenic 35.0%
! CAGTTTTTACATTCGTGATG+TGG - chr8_4:5889072-5889091 Msa1309430:intron 35.0%
! ATGACACACCGGTATATTTT+AGG - chr8_4:5889201-5889220 Msa1309430:intron 35.0%
ATGAGAAACTATCCTTCTAG+TGG - chr8_4:5889224-5889243 Msa1309430:CDS 35.0%
GGAATAAATACATCTACACC+TGG + chr8_4:5889256-5889275 None:intergenic 35.0%
ACATAATCTTCATCCCATGA+AGG + chr8_4:5889341-5889360 None:intergenic 35.0%
! CGGAATCTTCTGAAGAAATA+TGG - chr8_4:5889362-5889381 Msa1309430:CDS 35.0%
TTGAAAAGATTGAGCTTGCA+AGG - chr8_4:5889390-5889409 Msa1309430:CDS 35.0%
!! GACTATGGATTTGTTACCTT+TGG - chr8_4:5889437-5889456 Msa1309430:CDS 35.0%
AGCATTACTGGTACAGAATT+GGG - chr8_4:5889491-5889510 Msa1309430:CDS 35.0%
TAACTGGTATAGACATGACA+GGG + chr8_4:5889818-5889837 None:intergenic 35.0%
TGTCTATACCAGTTAGAAGT+AGG - chr8_4:5889823-5889842 Msa1309430:CDS 35.0%
CTTCTATCATAAGATCTAGC+TGG + chr8_4:5889861-5889880 None:intergenic 35.0%
GTGGATAATCCCTATAAGTT+GGG + chr8_4:5890091-5890110 None:intergenic 35.0%
GATAGAGAATCATAATCACG+AGG + chr8_4:5890260-5890279 None:intergenic 35.0%
CGTGATTATGATTCTCTATC+TGG - chr8_4:5890260-5890279 Msa1309430:intron 35.0%
AATGAGATCGTAAACAATGC+AGG + chr8_4:5890347-5890366 None:intergenic 35.0%
!!! TTTGTTTTTTATGCCCAACC+AGG - chr8_4:5890409-5890428 Msa1309430:intron 35.0%
CTTGACCAGAAATAGAACTT+CGG + chr8_4:5890671-5890690 None:intergenic 35.0%
!! ATTTCTGGTCAAGATTCACA+TGG - chr8_4:5890678-5890697 Msa1309430:CDS 35.0%
! TTTCTGGTCAAGATTCACAT+GGG - chr8_4:5890679-5890698 Msa1309430:CDS 35.0%
GGCATGTATTCATCAAGTTA+TGG - chr8_4:5890849-5890868 Msa1309430:CDS 35.0%
ATCTATTGTTCCTGTGATGT+AGG - chr8_4:5890963-5890982 Msa1309430:intron 35.0%
TCATCAATGTATTCTGGTAG+GGG - chr8_4:5891003-5891022 Msa1309430:intron 35.0%
TAGGATGCATTCAGTATAAG+TGG - chr8_4:5891128-5891147 Msa1309430:intron 35.0%
! CATCTCTTATCTTTTCGCAA+GGG - chr8_4:5891188-5891207 Msa1309430:intron 35.0%
CTGTTCATAGACAAATTCAC+TGG + chr8_4:5891240-5891259 None:intergenic 35.0%
CATGTCAATTCAAGCTATCT+CGG - chr8_4:5891395-5891414 Msa1309430:CDS 35.0%
ATGTCAATTCAAGCTATCTC+GGG - chr8_4:5891396-5891415 Msa1309430:CDS 35.0%
TTTATGATACCATTTGTGGG+TGG - chr8_4:5891529-5891548 Msa1309430:CDS 35.0%
TAACATTATCCACCCACAAA+TGG + chr8_4:5891541-5891560 None:intergenic 35.0%
TGCTCCAATACCATTTCATT+TGG - chr8_4:5891573-5891592 Msa1309430:CDS 35.0%
CTGTCCAAATGAAATGGTAT+TGG + chr8_4:5891580-5891599 None:intergenic 35.0%
! AGATGCTACTTGTTTGGTTA+AGG - chr8_4:5891613-5891632 Msa1309430:CDS 35.0%
TCTGCTGAATGTATCAAAGT+TGG - chr8_4:5891652-5891671 Msa1309430:CDS 35.0%
! GAACTGATAATATTTGCTGC+TGG - chr8_4:5891900-5891919 Msa1309430:intron 35.0%
!! TACTTTGAGTTTTTGTCCTG+AGG - chr8_4:5891933-5891952 Msa1309430:intron 35.0%
AAACTATGCAGGTTACTAGA+TGG + chr8_4:5892003-5892022 None:intergenic 35.0%
! TTTAGCTTCTGCATTGTAGT+GGG - chr8_4:5892102-5892121 Msa1309430:intron 35.0%
! GAGCTTTTCTAAATCAAGCT+AGG + chr8_4:5892217-5892236 None:intergenic 35.0%
AGCTTGATTTAGAAAAGCTC+GGG - chr8_4:5892217-5892236 Msa1309430:intron 35.0%
! TGTCAATGACCGATTTATGT+TGG + chr8_4:5892252-5892271 None:intergenic 35.0%
CTCAACATTGCTCAGAAATA+GGG + chr8_4:5892533-5892552 None:intergenic 35.0%
ACTCAACATTGCTCAGAAAT+AGG + chr8_4:5892534-5892553 None:intergenic 35.0%
ATTAATATATTCACTGGGCG+TGG - chr8_4:5892635-5892654 Msa1309430:CDS 35.0%
TTAATATATTCACTGGGCGT+GGG - chr8_4:5892636-5892655 Msa1309430:CDS 35.0%
!! ACTCTAGTTTAGCTCTTGTT+AGG - chr8_4:5892782-5892801 Msa1309430:CDS 35.0%
TGAACCTGTTGAAGAGAAGA+CGG - chr8_4:5886794-5886813 Msa1309430:three_prime_UTR 40.0%
GGTGATTGAAGAAGAGATCA+AGG - chr8_4:5886815-5886834 Msa1309430:three_prime_UTR 40.0%
AGAAGAGAATCTCGTTGTTG+AGG - chr8_4:5886839-5886858 Msa1309430:three_prime_UTR 40.0%
! CGCCATTGATAACATTGTTG+TGG - chr8_4:5887627-5887646 Msa1309430:three_prime_UTR 40.0%
TTTGACAGAAGATGAAGAGG+AGG - chr8_4:5887759-5887778 Msa1309430:three_prime_UTR 40.0%
AGAAGATGAAGAGGAGGTTA+AGG - chr8_4:5887765-5887784 Msa1309430:three_prime_UTR 40.0%
GAAGGAAATTGAACAGGAAG+AGG - chr8_4:5887885-5887904 Msa1309430:three_prime_UTR 40.0%
! CCTTCACCAACATTTTCTTC+AGG + chr8_4:5887943-5887962 None:intergenic 40.0%
! CCTGAAGAAAATGTTGGTGA+AGG - chr8_4:5887940-5887959 Msa1309430:three_prime_UTR 40.0%
! AATGTTGGTGAAGGTGATTC+AGG - chr8_4:5887949-5887968 Msa1309430:three_prime_UTR 40.0%
TGATGAAATTGAGGGAGAAG+AGG - chr8_4:5887996-5888015 Msa1309430:three_prime_UTR 40.0%
ATGCTACTGAAGATGATCTG+AGG - chr8_4:5888157-5888176 Msa1309430:three_prime_UTR 40.0%
TACTGAAGATGATCTGAGGA+AGG - chr8_4:5888161-5888180 Msa1309430:three_prime_UTR 40.0%
! GATGATCTGAGGAAGGTTTT+CGG - chr8_4:5888168-5888187 Msa1309430:three_prime_UTR 40.0%
!!! CCCTTGTTCTTTTTTGTCTG+AGG + chr8_4:5888234-5888253 None:intergenic 40.0%
ACAAGGGATTTGCATTCTTG+CGG - chr8_4:5888247-5888266 Msa1309430:intron 40.0%
GAGAAGTCAAAGATTACCAC+TGG + chr8_4:5888321-5888340 None:intergenic 40.0%
GACAGTGATACCCTCTATTT+GGG - chr8_4:5888448-5888467 Msa1309430:CDS 40.0%
GCTTCAACTTCTCCTTTAAC+TGG + chr8_4:5888622-5888641 None:intergenic 40.0%
AAACCGTGGATTTGCATTCT+TGG - chr8_4:5888703-5888722 Msa1309430:intron 40.0%
! CTTTAAGAGACTGCAGAAGA+GGG - chr8_4:5888757-5888776 Msa1309430:intron 40.0%
TCTGCAAATGAAACCTTTGC+AGG + chr8_4:5888806-5888825 None:intergenic 40.0%
! GCAGATTCTTTTATTGACCC+GGG - chr8_4:5888821-5888840 Msa1309430:CDS 40.0%
GTGACATAATTTCATCACCC+GGG + chr8_4:5888841-5888860 None:intergenic 40.0%
GGGTGATGAAATTATGTCAC+AGG - chr8_4:5888841-5888860 Msa1309430:CDS 40.0%
TAAGCGGAACATGTGTAGAA+TGG - chr8_4:5888908-5888927 Msa1309430:intron 40.0%
ATGAGTTCCAATACCATCAG+TGG - chr8_4:5888941-5888960 Msa1309430:intron 40.0%
TAACCAACCACTGATGGTAT+TGG + chr8_4:5888951-5888970 None:intergenic 40.0%
GAAACTATCCTTCTAGTGGT+TGG - chr8_4:5889228-5889247 Msa1309430:CDS 40.0%
TAATCTTCATCCCATGAAGG+AGG + chr8_4:5889338-5889357 None:intergenic 40.0%
CATGGGATGAAGATTATGTC+CGG - chr8_4:5889342-5889361 Msa1309430:CDS 40.0%
! TCTTCTGAAGAAATATGGCG+AGG - chr8_4:5889367-5889386 Msa1309430:CDS 40.0%
CAGCATTACTGGTACAGAAT+TGG - chr8_4:5889490-5889509 Msa1309430:CDS 40.0%
ATTGGGTGAAGGTGACAAAA+AGG - chr8_4:5889508-5889527 Msa1309430:CDS 40.0%
AATATCTGCGCAGTGAAACA+TGG - chr8_4:5889551-5889570 Msa1309430:intron 40.0%
CAATAATGTCAAGGCCTTCT+TGG - chr8_4:5889694-5889713 Msa1309430:CDS 40.0%
CTAACTGGTATAGACATGAC+AGG + chr8_4:5889819-5889838 None:intergenic 40.0%
CTATCATAAGATCTAGCTGG+AGG + chr8_4:5889858-5889877 None:intergenic 40.0%
TCTTATGATAGAAGACCAGC+TGG - chr8_4:5889867-5889886 Msa1309430:CDS 40.0%
ATTGTACACTACATACCAGC+TGG + chr8_4:5889885-5889904 None:intergenic 40.0%
GCAGCATCTAGAAGACAATA+TGG + chr8_4:5889960-5889979 None:intergenic 40.0%
AGCAGTGTGAAGAGAGATTA+TGG - chr8_4:5889990-5890009 Msa1309430:intron 40.0%
GTGTGAAGAGAGATTATGGT+CGG - chr8_4:5889994-5890013 Msa1309430:CDS 40.0%
AGTAGAGTTGCTGCAGATTA+TGG - chr8_4:5890041-5890060 Msa1309430:CDS 40.0%
TTGCTGCAGATTATGGATCA+AGG - chr8_4:5890048-5890067 Msa1309430:CDS 40.0%
TGAAAGACGCCCAACTTATA+GGG - chr8_4:5890079-5890098 Msa1309430:CDS 40.0%
GGTGGATAATCCCTATAAGT+TGG + chr8_4:5890092-5890111 None:intergenic 40.0%
TCCTTCACGATAACTTGGAT+GGG + chr8_4:5890234-5890253 None:intergenic 40.0%
!! GGAAGATCTAGTCTTGGATA+TGG - chr8_4:5890636-5890655 Msa1309430:intron 40.0%
!! TCTAGTCTTGGATATGGTAG+TGG - chr8_4:5890642-5890661 Msa1309430:intron 40.0%
TTCTGGTCAAGATTCACATG+GGG - chr8_4:5890680-5890699 Msa1309430:CDS 40.0%
! TTTTTCCGATCAGGCTCTTA+TGG - chr8_4:5890810-5890829 Msa1309430:CDS 40.0%
TCTTATGGCGGTAATGATGT+TGG - chr8_4:5890825-5890844 Msa1309430:CDS 40.0%
ATTGTTCCTGTGATGTAGGT+TGG - chr8_4:5890967-5890986 Msa1309430:intron 40.0%
GGTTCGGGATCTTATTATTG+AGG - chr8_4:5891060-5891079 Msa1309430:CDS 40.0%
! GCATCTCTTATCTTTTCGCA+AGG - chr8_4:5891187-5891206 Msa1309430:intron 40.0%
! TCTTATCTTTTCGCAAGGGA+TGG - chr8_4:5891192-5891211 Msa1309430:intron 40.0%
AATTGGCTGCAATAGGATGA+CGG - chr8_4:5891273-5891292 Msa1309430:CDS 40.0%
GGGAACTTGTCGCAAAAATT+AGG - chr8_4:5891371-5891390 Msa1309430:CDS 40.0%
TGGTCTCTGTCCAAATGAAA+TGG + chr8_4:5891586-5891605 None:intergenic 40.0%
TTTCATTTGGACAGAGACCA+AGG - chr8_4:5891586-5891605 Msa1309430:CDS 40.0%
GTGTTGTAGGATTTGTGACA+TGG - chr8_4:5891848-5891867 Msa1309430:intron 40.0%
!! TTTGAGTTTTTGTCCTGAGG+TGG - chr8_4:5891936-5891955 Msa1309430:intron 40.0%
TGCAGAAGCTAAAGATTCTG+TGG + chr8_4:5892095-5892114 None:intergenic 40.0%
! CTTTAGCTTCTGCATTGTAG+TGG - chr8_4:5892101-5892120 Msa1309430:intron 40.0%
TAAATCAAGCTAGGTAGGGT+GGG + chr8_4:5892208-5892227 None:intergenic 40.0%
GCTTGATTTAGAAAAGCTCG+GGG - chr8_4:5892218-5892237 Msa1309430:intron 40.0%
CTCAAGACAACCAACAATGT+GGG + chr8_4:5892343-5892362 None:intergenic 40.0%
ACTCAAGACAACCAACAATG+TGG + chr8_4:5892344-5892363 None:intergenic 40.0%
AGACAACCAACGATATGGTT+CGG + chr8_4:5892388-5892407 None:intergenic 40.0%
ACTCAAGACAACCAACGATA+TGG + chr8_4:5892393-5892412 None:intergenic 40.0%
AGTATACATCTTGAAGGAGG+AGG - chr8_4:5892447-5892466 Msa1309430:intron 40.0%
!! GTCTTCGGAGGCATTGTTAT+TGG + chr8_4:5886678-5886697 None:intergenic 45.0%
ATCACCGTCTTCTCTTCAAC+AGG + chr8_4:5886801-5886820 None:intergenic 45.0%
CGTTGTTGAGGAAAAACCTG+TGG - chr8_4:5886851-5886870 Msa1309430:three_prime_UTR 45.0%
TGTTGAGGAAAAACCTGTGG+TGG - chr8_4:5886854-5886873 Msa1309430:three_prime_UTR 45.0%
GGATTATCTTCTTCCACCAC+AGG + chr8_4:5886870-5886889 None:intergenic 45.0%
TTAGCATCTTCTACAGCCTC+AGG + chr8_4:5886933-5886952 None:intergenic 45.0%
AGTTTCTTTGACAACCGCCA+TGG - chr8_4:5887561-5887580 Msa1309430:three_prime_UTR 45.0%
!!! CAACCGCCATGGTGTTTTTT+TGG - chr8_4:5887572-5887591 Msa1309430:three_prime_UTR 45.0%
TGTCCGCCAAAAAAACACCA+TGG + chr8_4:5887581-5887600 None:intergenic 45.0%
! TTGGCGGACATAGCAAAAGA+AGG - chr8_4:5887591-5887610 Msa1309430:three_prime_UTR 45.0%
TGATCCTGAGTATGAACCTG+AGG - chr8_4:5887837-5887856 Msa1309430:three_prime_UTR 45.0%
TACTCCTCAGGTTCATACTC+AGG + chr8_4:5887844-5887863 None:intergenic 45.0%
GAGTATGAACCTGAGGAGTA+TGG - chr8_4:5887844-5887863 Msa1309430:three_prime_UTR 45.0%
! TATGAACCTGAGGAGTATGG+TGG - chr8_4:5887847-5887866 Msa1309430:three_prime_UTR 45.0%
! ATGAACCTGAGGAGTATGGT+GGG - chr8_4:5887848-5887867 Msa1309430:three_prime_UTR 45.0%
TGGGGTTGACTATGATGAGA+AGG - chr8_4:5887867-5887886 Msa1309430:three_prime_UTR 45.0%
GGAACATCGTGAAGTTGTGA+AGG - chr8_4:5888083-5888102 Msa1309430:three_prime_UTR 45.0%
ATCGTGAAGTTGTGAAGGAG+AGG - chr8_4:5888088-5888107 Msa1309430:three_prime_UTR 45.0%
CTTCAGTAGCATCCTTGTCT+AGG + chr8_4:5888149-5888168 None:intergenic 45.0%
! AGGAAGGTTTTCGGTGAAGT+TGG - chr8_4:5888177-5888196 Msa1309430:three_prime_UTR 45.0%
! GGAAGGTTTTCGGTGAAGTT+GGG - chr8_4:5888178-5888197 Msa1309430:three_prime_UTR 45.0%
! GAAGGTTTTCGGTGAAGTTG+GGG - chr8_4:5888179-5888198 Msa1309430:three_prime_UTR 45.0%
AGCAGAGCTTAAAAACCCAG+TGG - chr8_4:5888302-5888321 Msa1309430:intron 45.0%
GGACAGTGATACCCTCTATT+TGG - chr8_4:5888447-5888466 Msa1309430:CDS 45.0%
! GAACTTCTGGTGCCAGTTAA+AGG - chr8_4:5888607-5888626 Msa1309430:intron 45.0%
CCTCTTCTGCAGTCTCTTAA+AGG + chr8_4:5888759-5888778 None:intergenic 45.0%
! CCTTTAAGAGACTGCAGAAG+AGG - chr8_4:5888756-5888775 Msa1309430:intron 45.0%
CAGAAGAGGGATGTTACGTT+TGG - chr8_4:5888770-5888789 Msa1309430:intron 45.0%
!! TGGAGTTGATAAGCCTGCAA+AGG - chr8_4:5888790-5888809 Msa1309430:CDS 45.0%
GTTCCAATACCATCAGTGGT+TGG - chr8_4:5888945-5888964 Msa1309430:intron 45.0%
TTGATGCACTTCCTCCTTCA+TGG - chr8_4:5889324-5889343 Msa1309430:CDS 45.0%
TGATGCACTTCCTCCTTCAT+GGG - chr8_4:5889325-5889344 Msa1309430:CDS 45.0%
! AGATGTGCTGACAGCATTAC+TGG - chr8_4:5889479-5889498 Msa1309430:CDS 45.0%
ACTGGTACAGAATTGGGTGA+AGG - chr8_4:5889497-5889516 Msa1309430:CDS 45.0%
TCTTCTTTCAGGCCAAAGTG+AGG - chr8_4:5889592-5889611 Msa1309430:intron 45.0%
CTTCTTTCAGGCCAAAGTGA+GGG - chr8_4:5889593-5889612 Msa1309430:intron 45.0%
TGATAACCTAGCCCTCACTT+TGG + chr8_4:5889607-5889626 None:intergenic 45.0%
AAGTGAGGGCTAGGTTATCA+AGG - chr8_4:5889607-5889626 Msa1309430:intron 45.0%
TTATCAAGGCCACTTCAGAG+AGG - chr8_4:5889621-5889640 Msa1309430:intron 45.0%
! CACGACCAACATGTTTTCCA+CGG + chr8_4:5889647-5889666 None:intergenic 45.0%
GTGGAAAACATGTTGGTCGT+GGG - chr8_4:5889646-5889665 Msa1309430:CDS 45.0%
TGGAAAACATGTTGGTCGTG+GGG - chr8_4:5889647-5889666 Msa1309430:CDS 45.0%
ATTATTGCAGATCCGCGACT+CGG + chr8_4:5889681-5889700 None:intergenic 45.0%
GCGGATCTGCAATAATGTCA+AGG - chr8_4:5889685-5889704 Msa1309430:CDS 45.0%
!! CTAGCACTGATAGACCTGAT+TGG + chr8_4:5889786-5889805 None:intergenic 45.0%
TCATAAGATCTAGCTGGAGG+AGG + chr8_4:5889855-5889874 None:intergenic 45.0%
TCTGCAGCAACTCTACTTCT+TGG + chr8_4:5890038-5890057 None:intergenic 45.0%
! ATAAGTTGGGCGTCTTTCAG+AGG + chr8_4:5890078-5890097 None:intergenic 45.0%
CTGAAAGACGCCCAACTTAT+AGG - chr8_4:5890078-5890097 Msa1309430:CDS 45.0%
TATAGGGATTATCCACCTCG+TGG - chr8_4:5890095-5890114 Msa1309430:CDS 45.0%
! TGGATGATGGTTACAGCCAA+AGG - chr8_4:5890177-5890196 Msa1309430:CDS 45.0%
! GTTACAGCCAAAGGTATGAG+AGG - chr8_4:5890186-5890205 Msa1309430:CDS 45.0%
ACGATAACTTGGATGGGAAG+GGG + chr8_4:5890228-5890247 None:intergenic 45.0%
CACGATAACTTGGATGGGAA+GGG + chr8_4:5890229-5890248 None:intergenic 45.0%
TCACGATAACTTGGATGGGA+AGG + chr8_4:5890230-5890249 None:intergenic 45.0%
TCCCATCCAAGTTATCGTGA+AGG - chr8_4:5890230-5890249 Msa1309430:intron 45.0%
GTCCTTCACGATAACTTGGA+TGG + chr8_4:5890235-5890254 None:intergenic 45.0%
ACTCCAATCGAGCTCTTGAT+TGG + chr8_4:5890472-5890491 None:intergenic 45.0%
GCTCGATTGGAGTATGACTA+TGG - chr8_4:5890479-5890498 Msa1309430:intron 45.0%
CGATTGGAGTATGACTATGG+TGG - chr8_4:5890482-5890501 Msa1309430:intron 45.0%
TCACAGTACGGTGATGCTTA+TGG - chr8_4:5890512-5890531 Msa1309430:intron 45.0%
ACGGTGATGCTTATGGTGAT+AGG - chr8_4:5890519-5890538 Msa1309430:intron 45.0%
AGAGTCGGAAGATCTAGTCT+TGG - chr8_4:5890630-5890649 Msa1309430:intron 45.0%
TATGGCGGTAATGATGTTGG+AGG - chr8_4:5890828-5890847 Msa1309430:CDS 45.0%
! GAGATTGGTTGAGAAAGGAC+AGG + chr8_4:5890911-5890930 None:intergenic 45.0%
TCCTTTCTCAACCAATCTCG+AGG - chr8_4:5890912-5890931 Msa1309430:intron 45.0%
! TCCTCGAGATTGGTTGAGAA+AGG + chr8_4:5890916-5890935 None:intergenic 45.0%
AATGTATTCTGGTAGGGGCA+CGG - chr8_4:5891008-5891027 Msa1309430:intron 45.0%
!! ATGACGGCCTTTGAAGCTTA+TGG - chr8_4:5891289-5891308 Msa1309430:CDS 45.0%
ACAAGTAGCATCTCTAGCCT+TGG + chr8_4:5891606-5891625 None:intergenic 45.0%
! GGCTAGAGATGCTACTTGTT+TGG - chr8_4:5891607-5891626 Msa1309430:CDS 45.0%
! GTTTTTACAGTGCTGCAGTC+AGG - chr8_4:5891725-5891744 Msa1309430:CDS 45.0%
!! TTGGGATGTGTTGGTGTTGT+AGG - chr8_4:5891835-5891854 Msa1309430:intron 45.0%
ATTATCTTGCAGTCCACCTC+AGG + chr8_4:5891952-5891971 None:intergenic 45.0%
TGAATGTACTTCATGCACCC+TGG - chr8_4:5892173-5892192 Msa1309430:intron 45.0%
AAATCAAGCTAGGTAGGGTG+GGG + chr8_4:5892207-5892226 None:intergenic 45.0%
CTAAATCAAGCTAGGTAGGG+TGG + chr8_4:5892209-5892228 None:intergenic 45.0%
AGACAACCAACAATGTGGGT+CGG + chr8_4:5892339-5892358 None:intergenic 45.0%
! TATGGTTCGGGAGTTGGAAA+GGG + chr8_4:5892375-5892394 None:intergenic 45.0%
! ATATGGTTCGGGAGTTGGAA+AGG + chr8_4:5892376-5892395 None:intergenic 45.0%
GACAACCAACGATATGGTTC+GGG + chr8_4:5892387-5892406 None:intergenic 45.0%
! TGGGTTATTACGGACTGACT+TGG - chr8_4:5892655-5892674 Msa1309430:CDS 45.0%
GCAAAGCAAACAGAACAGTG+TGG + chr8_4:5892694-5892713 None:intergenic 45.0%
! TGTTTGCTTTGCTGTACTGC+AGG - chr8_4:5892702-5892721 Msa1309430:CDS 45.0%
! GTTTGCTTTGCTGTACTGCA+GGG - chr8_4:5892703-5892722 Msa1309430:CDS 45.0%
!!! TATTGATTTTTTTTTATATT+TGG - chr8_4:5887093-5887112 Msa1309430:three_prime_UTR 5.0%
!!! ATTGATTTTTTTTTATATTT+GGG - chr8_4:5887094-5887113 Msa1309430:three_prime_UTR 5.0%
GAACCTCTCTTTGGCGTCTT+CGG + chr8_4:5886693-5886712 None:intergenic 50.0%
! AGCGGGTAGTGGTTCAAAGA+GGG - chr8_4:5886713-5886732 Msa1309430:three_prime_UTR 50.0%
TTGGTTGTGGCAGATTTCGG+TGG - chr8_4:5887537-5887556 Msa1309430:three_prime_UTR 50.0%
CCGCCAAAAAAACACCATGG+CGG + chr8_4:5887578-5887597 None:intergenic 50.0%
!!! CCGCCATGGTGTTTTTTTGG+CGG - chr8_4:5887575-5887594 Msa1309430:three_prime_UTR 50.0%
GAGAGACGAGCGTCTAGATT+TGG - chr8_4:5887807-5887826 Msa1309430:three_prime_UTR 50.0%
AGACGAGCGTCTAGATTTGG+AGG - chr8_4:5887810-5887829 Msa1309430:three_prime_UTR 50.0%
! TGAACCTGAGGAGTATGGTG+GGG - chr8_4:5887849-5887868 Msa1309430:three_prime_UTR 50.0%
TGAACAGGAAGAGGGACATG+AGG - chr8_4:5887894-5887913 Msa1309430:three_prime_UTR 50.0%
TGAGGTGGGAGATGAAGTTG+AGG - chr8_4:5887912-5887931 Msa1309430:three_prime_UTR 50.0%
GATGGCTGATGTGGATGAAG+AGG - chr8_4:5888062-5888081 Msa1309430:three_prime_UTR 50.0%
TTGTGAAGGAGAGGCGAAAG+CGG - chr8_4:5888097-5888116 Msa1309430:three_prime_UTR 50.0%
! ATTTGTTGGGGGCCTAGACA+AGG - chr8_4:5888134-5888153 Msa1309430:three_prime_UTR 50.0%
TGAAGTTGGGGTTGTGACTG+AGG - chr8_4:5888191-5888210 Msa1309430:three_prime_UTR 50.0%
!! ATGTGGTGTTACTCCGAGTC+AGG - chr8_4:5888426-5888445 Msa1309430:intron 50.0%
! AGGGTATCACTGTCCTGACT+CGG + chr8_4:5888442-5888461 None:intergenic 50.0%
AGGCATCCATTGCATCTGAG+CGG + chr8_4:5888739-5888758 None:intergenic 50.0%
GGGTGTTCAGAATGACACAC+CGG - chr8_4:5889190-5889209 Msa1309430:intron 50.0%
! TCCTTCTAGTGGTTGGTTCC+AGG - chr8_4:5889235-5889254 Msa1309430:CDS 50.0%
ACCTGGAACCAACCACTAGA+AGG + chr8_4:5889239-5889258 None:intergenic 50.0%
TAGTCCTTTCTACGAGCAGC+TGG + chr8_4:5889422-5889441 None:intergenic 50.0%
GCTGCTCGTAGAAAGGACTA+TGG - chr8_4:5889422-5889441 Msa1309430:CDS 50.0%
AGAGGCCGTGGAAAACATGT+TGG - chr8_4:5889639-5889658 Msa1309430:CDS 50.0%
CGTGGAAAACATGTTGGTCG+TGG - chr8_4:5889645-5889664 Msa1309430:CDS 50.0%
TTATTGCAGATCCGCGACTC+GGG + chr8_4:5889680-5889699 None:intergenic 50.0%
! GCACTGATAGACCTGATTGG+CGG + chr8_4:5889783-5889802 None:intergenic 50.0%
! GGTAGTGGCCTACTTCTAAC+TGG + chr8_4:5889834-5889853 None:intergenic 50.0%
GCAACTCTACTTCTTGGAGG+TGG + chr8_4:5890032-5890051 None:intergenic 50.0%
GCAGCAACTCTACTTCTTGG+AGG + chr8_4:5890035-5890054 None:intergenic 50.0%
TCAGAGTAGTCAGATCCACG+AGG + chr8_4:5890113-5890132 None:intergenic 50.0%
CAGCACGAGCAGTACTTCTA+GGG + chr8_4:5890139-5890158 None:intergenic 50.0%
TCATCCACGTAACCTCTCCT+AGG + chr8_4:5890164-5890183 None:intergenic 50.0%
AGGAGAGGTTACGTGGATGA+TGG - chr8_4:5890164-5890183 Msa1309430:CDS 50.0%
CGATAACTTGGATGGGAAGG+GGG + chr8_4:5890227-5890246 None:intergenic 50.0%
ATCTTGGGGGAACATCATCC+TGG + chr8_4:5890430-5890449 None:intergenic 50.0%
!! ACCAGTATCGGCGTATCTTG+GGG + chr8_4:5890444-5890463 None:intergenic 50.0%
!! CACCAGTATCGGCGTATCTT+GGG + chr8_4:5890445-5890464 None:intergenic 50.0%
TGATTGGCGAGCACCAGTAT+CGG + chr8_4:5890456-5890475 None:intergenic 50.0%
TCGCCAATCAAGAGCTCGAT+TGG - chr8_4:5890466-5890485 Msa1309430:intron 50.0%
GGCAGCCGAAGTTCTATTTC+TGG - chr8_4:5890663-5890682 Msa1309430:CDS 50.0%
CACATGGGGTGTATAGCAGT+CGG - chr8_4:5890694-5890713 Msa1309430:CDS 50.0%
TTCCGATCAGGCTCTTATGG+CGG - chr8_4:5890813-5890832 Msa1309430:CDS 50.0%
TACCGCCATAAGAGCCTGAT+CGG + chr8_4:5890818-5890837 None:intergenic 50.0%
CTCAACCAATCTCGAGGAGT+CGG - chr8_4:5890918-5890937 Msa1309430:intron 50.0%
! GTTCCTGTGATGTAGGTTGG+TGG - chr8_4:5890970-5890989 Msa1309430:intron 50.0%
! ATGTATTCTGGTAGGGGCAC+GGG - chr8_4:5891009-5891028 Msa1309430:intron 50.0%
ATGGCGAAGGTTGCACATTG+TGG - chr8_4:5891211-5891230 Msa1309430:CDS 50.0%
AGCTATCTCGGGTCTTCTCT+AGG - chr8_4:5891407-5891426 Msa1309430:CDS 50.0%
TATCTCGGGTCTTCTCTAGG+TGG - chr8_4:5891410-5891429 Msa1309430:CDS 50.0%
ATCTCGGGTCTTCTCTAGGT+GGG - chr8_4:5891411-5891430 Msa1309430:CDS 50.0%
GGACTCAAGTTAGTGAGCGA+TGG - chr8_4:5891466-5891485 Msa1309430:CDS 50.0%
GCGAAATCGGGAAACTATGC+AGG + chr8_4:5892014-5892033 None:intergenic 50.0%
AATCAAGCTAGGTAGGGTGG+GGG + chr8_4:5892206-5892225 None:intergenic 50.0%
GACAACCAACAATGTGGGTC+GGG + chr8_4:5892338-5892357 None:intergenic 50.0%
! CAACGATATGGTTCGGGAGT+TGG + chr8_4:5892381-5892400 None:intergenic 50.0%
CAACTCCCGAACCATATCGT+TGG - chr8_4:5892379-5892398 Msa1309430:intron 50.0%
! TCACTGGGCGTGGGTTATTA+CGG - chr8_4:5892645-5892664 Msa1309430:CDS 50.0%
GACGCCAAAGAGAGGTTCAG+CGG - chr8_4:5886695-5886714 Msa1309430:three_prime_UTR 55.0%
ACGCCAAAGAGAGGTTCAGC+GGG - chr8_4:5886696-5886715 Msa1309430:three_prime_UTR 55.0%
CTACCCGCTGAACCTCTCTT+TGG + chr8_4:5886702-5886721 None:intergenic 55.0%
AAGAGAGGTTCAGCGGGTAG+TGG - chr8_4:5886702-5886721 Msa1309430:three_prime_UTR 55.0%
! CAGCGGGTAGTGGTTCAAAG+AGG - chr8_4:5886712-5886731 Msa1309430:three_prime_UTR 55.0%
! GCGGGTAGTGGTTCAAAGAG+GGG - chr8_4:5886714-5886733 Msa1309430:three_prime_UTR 55.0%
! GGTAGTGGTTCAAAGAGGGG+TGG - chr8_4:5886717-5886736 Msa1309430:three_prime_UTR 55.0%
AGGGGTGGCAGATTATCGAG+AGG - chr8_4:5886732-5886751 Msa1309430:three_prime_UTR 55.0%
TCAACCCCACCATACTCCTC+AGG + chr8_4:5887856-5887875 None:intergenic 55.0%
ACAGGAAGAGGGACATGAGG+TGG - chr8_4:5887897-5887916 Msa1309430:three_prime_UTR 55.0%
CAGGAAGAGGGACATGAGGT+GGG - chr8_4:5887898-5887917 Msa1309430:three_prime_UTR 55.0%
TGGTGAAGGTGATTCAGGCG+AGG - chr8_4:5887954-5887973 Msa1309430:three_prime_UTR 55.0%
GGCGAGGAAGAAGTCGAAGA+TGG - chr8_4:5887970-5887989 Msa1309430:three_prime_UTR 55.0%
TTGGGGTTGTGACTGAGGTC+AGG - chr8_4:5888196-5888215 Msa1309430:three_prime_UTR 55.0%
TTCCTCCCGCTCAGATGCAA+TGG - chr8_4:5888730-5888749 Msa1309430:intron 55.0%
ATCCATTGCATCTGAGCGGG+AGG + chr8_4:5888735-5888754 None:intergenic 55.0%
GGCATCCATTGCATCTGAGC+GGG + chr8_4:5888738-5888757 None:intergenic 55.0%
CATGCCAGCTGCTCGTAGAA+AGG - chr8_4:5889415-5889434 Msa1309430:CDS 55.0%
AGCAGCATCGTGTGAGCCAA+AGG + chr8_4:5889456-5889475 None:intergenic 55.0%
TTCAGGCCAAAGTGAGGGCT+AGG - chr8_4:5889598-5889617 Msa1309430:intron 55.0%
! TTTCCACGGCCTCTCTGAAG+TGG + chr8_4:5889633-5889652 None:intergenic 55.0%
AGAAACTACGGGGTGCAGGT+CGG + chr8_4:5889725-5889744 None:intergenic 55.0%
TCGCGTGGGGTAAGAGGAAT+TGG - chr8_4:5889747-5889766 Msa1309430:CDS 55.0%
GATCTAGCTGGAGGAGGTAG+TGG + chr8_4:5889849-5889868 None:intergenic 55.0%
GAGTAGTCAGATCCACGAGG+TGG + chr8_4:5890110-5890129 None:intergenic 55.0%
GCAGCACGAGCAGTACTTCT+AGG + chr8_4:5890140-5890159 None:intergenic 55.0%
TGCACCTAGGAGAGGTTACG+TGG - chr8_4:5890157-5890176 Msa1309430:CDS 55.0%
GAGGTGGCCTCTCATACCTT+TGG + chr8_4:5890196-5890215 None:intergenic 55.0%
TAACTTGGATGGGAAGGGGG+TGG + chr8_4:5890224-5890243 None:intergenic 55.0%
GGGCGTCCTTCACGATAACT+TGG + chr8_4:5890239-5890258 None:intergenic 55.0%
AAAACGTTCGTACGCTGCCG+TGG - chr8_4:5890286-5890305 Msa1309430:intron 55.0%
GGGGGAACATCATCCTGGTT+GGG + chr8_4:5890425-5890444 None:intergenic 55.0%
TGGGGGAACATCATCCTGGT+TGG + chr8_4:5890426-5890445 None:intergenic 55.0%
!! CCAGTATCGGCGTATCTTGG+GGG + chr8_4:5890443-5890462 None:intergenic 55.0%
!! GCACCAGTATCGGCGTATCT+TGG + chr8_4:5890446-5890465 None:intergenic 55.0%
GGTGGCAGTGCTTCACAGTA+CGG - chr8_4:5890500-5890519 Msa1309430:intron 55.0%
AGTCGGCAGGGCATGAGTTA+TGG - chr8_4:5890711-5890730 Msa1309430:CDS 55.0%
CAGGGCATGAGTTATGGTGG+AGG - chr8_4:5890717-5890736 Msa1309430:CDS 55.0%
GGCGGTGATTACGTTTCTCG+TGG - chr8_4:5890870-5890889 Msa1309430:CDS 55.0%
ACAGTCCGACTCCTCGAGAT+TGG + chr8_4:5890926-5890945 None:intergenic 55.0%
CTGCCACCAACCTACATCAC+AGG + chr8_4:5890976-5890995 None:intergenic 55.0%
! GGTGGCGGTAGCAGTTACAT+GGG - chr8_4:5891030-5891049 Msa1309430:CDS 55.0%
GGTAGCAGTTACATGGGCAG+CGG - chr8_4:5891036-5891055 Msa1309430:CDS 55.0%
TTACATGGGCAGCGGTGGTT+CGG - chr8_4:5891044-5891063 Msa1309430:CDS 55.0%
! CTTTTCGCAAGGGATGGCGA+AGG - chr8_4:5891198-5891217 Msa1309430:CDS 55.0%
ATCAAGCTAGGTAGGGTGGG+GGG + chr8_4:5892205-5892224 None:intergenic 55.0%
CAACAATGTGGGTCGGGAGT+TGG + chr8_4:5892332-5892351 None:intergenic 55.0%
CAACTCCCGACCCACATTGT+TGG - chr8_4:5892330-5892349 Msa1309430:intron 55.0%
CCTCTCTTTGGCGTCTTCGG+AGG + chr8_4:5886690-5886709 None:intergenic 60.0%
CCTCCGAAGACGCCAAAGAG+AGG - chr8_4:5886687-5886706 Msa1309430:three_prime_UTR 60.0%
GAAGCATGACCGTGAGCGTG+CGG - chr8_4:5888038-5888057 Msa1309430:three_prime_UTR 60.0%
GACGAGAAACTACGGGGTGC+AGG + chr8_4:5889729-5889748 None:intergenic 60.0%
CCACGCGACGAGAAACTACG+GGG + chr8_4:5889735-5889754 None:intergenic 60.0%
CCCACGCGACGAGAAACTAC+GGG + chr8_4:5889736-5889755 None:intergenic 60.0%
CCCGTAGTTTCTCGTCGCGT+GGG - chr8_4:5889733-5889752 Msa1309430:CDS 60.0%
CCCCACGCGACGAGAAACTA+CGG + chr8_4:5889737-5889756 None:intergenic 60.0%
CCGTAGTTTCTCGTCGCGTG+GGG - chr8_4:5889734-5889753 Msa1309430:CDS 60.0%
TTCTCGTCGCGTGGGGTAAG+AGG - chr8_4:5889741-5889760 Msa1309430:CDS 60.0%
GAAGTCGTGCTCCGCCAATC+AGG - chr8_4:5889769-5889788 Msa1309430:CDS 60.0%
GTACTGCTCGTGCTGCACCT+AGG - chr8_4:5890144-5890163 Msa1309430:CDS 60.0%
CCCCCAAGATACGCCGATAC+TGG - chr8_4:5890440-5890459 Msa1309430:intron 60.0%
TGGGGTGTATAGCAGTCGGC+AGG - chr8_4:5890698-5890717 Msa1309430:CDS 60.0%
GGGGTGTATAGCAGTCGGCA+GGG - chr8_4:5890699-5890718 Msa1309430:CDS 60.0%
CGGCAGGGCATGAGTTATGG+TGG - chr8_4:5890714-5890733 Msa1309430:CDS 60.0%
! TATTCTGGTAGGGGCACGGG+TGG - chr8_4:5891012-5891031 Msa1309430:intron 60.0%
! GGGTGGCGGTAGCAGTTACA+TGG - chr8_4:5891029-5891048 Msa1309430:CDS 60.0%
AGCAGTTACATGGGCAGCGG+TGG - chr8_4:5891039-5891058 Msa1309430:CDS 60.0%
TACATGGGCAGCGGTGGTTC+GGG - chr8_4:5891045-5891064 Msa1309430:CDS 60.0%
AGGGTGGGGGGGTAAAACCA+GGG + chr8_4:5892193-5892212 None:intergenic 60.0%
TAGGGTGGGGGGGTAAAACC+AGG + chr8_4:5892194-5892213 None:intergenic 60.0%
TCAAGCTAGGTAGGGTGGGG+GGG + chr8_4:5892204-5892223 None:intergenic 60.0%
TGACCGTGAGCGTGCGGAGA+TGG - chr8_4:5888044-5888063 Msa1309430:three_prime_UTR 65.0%
CAGCCATCTCCGCACGCTCA+CGG + chr8_4:5888050-5888069 None:intergenic 65.0%
GCGTGCGGAGATGGCTGATG+TGG - chr8_4:5888053-5888072 Msa1309430:three_prime_UTR 65.0%
AGGCCACTTCAGAGAGGCCG+TGG - chr8_4:5889627-5889646 Msa1309430:intron 65.0%
GCAGGTCGGCTGCTCCAAGA+AGG + chr8_4:5889711-5889730 None:intergenic 65.0%
CCCCGTAGTTTCTCGTCGCG+TGG - chr8_4:5889732-5889751 Msa1309430:CDS 65.0%
GCTCGTGCTGCACCTAGGAG+AGG - chr8_4:5890149-5890168 Msa1309430:CDS 65.0%
CTTGGATGGGAAGGGGGTGG+AGG + chr8_4:5890221-5890240 None:intergenic 65.0%
GGGGACTATCGCCCGAGTCG+CGG - chr8_4:5889666-5889685 Msa1309430:CDS 70.0%
GAAGGGGGTGGAGGAGGAGG+TGG + chr8_4:5890212-5890231 None:intergenic 70.0%
TGGGAAGGGGGTGGAGGAGG+AGG + chr8_4:5890215-5890234 None:intergenic 70.0%
GGATGGGAAGGGGGTGGAGG+AGG + chr8_4:5890218-5890237 None:intergenic 70.0%
! TCTGGTAGGGGCACGGGTGG+CGG - chr8_4:5891015-5891034 Msa1309430:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 5886546 5892975 5886546 ID=Msa1309430;Name=Msa1309430
chr8_4 mRNA 5886546 5892975 5886546 ID=Msa1309430-mRNA-1;Parent=Msa1309430;Name=Msa1309430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=138|1|1|1|0.90|0.83|12|1717|799
chr8_4 exon 5886546 5888261 5886546 ID=Msa1309430-mRNA-1:exon:1993;Parent=Msa1309430-mRNA-1
chr8_4 exon 5888440 5888536 5888440 ID=Msa1309430-mRNA-1:exon:1992;Parent=Msa1309430-mRNA-1
chr8_4 exon 5888622 5888698 5888622 ID=Msa1309430-mRNA-1:exon:1991;Parent=Msa1309430-mRNA-1
chr8_4 exon 5888783 5888889 5888783 ID=Msa1309430-mRNA-1:exon:1990;Parent=Msa1309430-mRNA-1
chr8_4 exon 5888981 5889090 5888981 ID=Msa1309430-mRNA-1:exon:1989;Parent=Msa1309430-mRNA-1
chr8_4 exon 5889214 5889548 5889214 ID=Msa1309430-mRNA-1:exon:1988;Parent=Msa1309430-mRNA-1
chr8_4 exon 5889633 5889918 5889633 ID=Msa1309430-mRNA-1:exon:1987;Parent=Msa1309430-mRNA-1
chr8_4 exon 5889992 5890213 5889992 ID=Msa1309430-mRNA-1:exon:1986;Parent=Msa1309430-mRNA-1
chr8_4 exon 5890659 5890898 5890659 ID=Msa1309430-mRNA-1:exon:1985;Parent=Msa1309430-mRNA-1
chr8_4 exon 5891020 5891109 5891020 ID=Msa1309430-mRNA-1:exon:1984;Parent=Msa1309430-mRNA-1
chr8_4 exon 5891198 5891754 5891198 ID=Msa1309430-mRNA-1:exon:1983;Parent=Msa1309430-mRNA-1
chr8_4 exon 5892558 5892975 5892558 ID=Msa1309430-mRNA-1:exon:1982;Parent=Msa1309430-mRNA-1
chr8_4 five_prime_UTR 5892838 5892975 5892838 ID=Msa1309430-mRNA-1:five_prime_utr;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5892558 5892837 5892558 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5891198 5891754 5891198 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5891020 5891109 5891020 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5890659 5890898 5890659 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5889992 5890213 5889992 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5889633 5889918 5889633 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5889214 5889548 5889214 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5888981 5889090 5888981 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5888783 5888889 5888783 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5888622 5888698 5888622 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 CDS 5888441 5888536 5888441 ID=Msa1309430-mRNA-1:cds;Parent=Msa1309430-mRNA-1
chr8_4 three_prime_UTR 5888440 5888440 5888440 ID=Msa1309430-mRNA-1:three_prime_utr;Parent=Msa1309430-mRNA-1
chr8_4 three_prime_UTR 5886546 5888261 5886546 ID=Msa1309430-mRNA-1:three_prime_utr;Parent=Msa1309430-mRNA-1
Gene Sequence

>Msa1309430

ATGCCTCCGAAGACGCCAAAGAGAGGTTCAGCGGGTAGTGGTTCAAAGAGGGGTGGCAGATTATCGAGAGGAACTGCGAAATCTGCACAGAATCAACAACAACAGCAATCTGAACCTGTTGAAGAGAAGACGGTGATTGAAGAAGAGATCAAGGTAGAAGAGAATCTCGTTGTTGAGGAAAAACCTGTGGTGGAAGAAGATAATCCTGTTGTTGAAGATAAAGCTATTGATATGAATCAAATTGCTCCTGAGGCTGTAGAAGATGCTAATCTAGCCAAAAAAGATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAGAGAGACGAGCGTCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGGGTTGACTATGATGAGAAGGAAATTGAACAGGAAGAGGGACATGAGGTGGGAGATGAAGTTGAGGAAGAACCTGAAGAAAATGTTGGTGAAGGTGATTCAGGCGAGGAAGAAGTCGAAGATGGTCATGATGAAATTGAGGGAGAAGAGGATGACGAGCATGCTGATGAGAAGCATGACCGTGAGCGTGCGGAGATGGCTGATGTGGATGAAGAGGAACATCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCGGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTGATGATGAATCCTCAGACAAAAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTTAAAAACCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCGAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAAACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCATTCTTGGAATTTTCCTCCCGCTCAGATGCAATGGATGCCTTTAAGAGACTGCAGAAGAGGGATGTTACGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATTGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTGAAGAAATATGGCGAGGTTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTGCTCGTAGAAAGGACTATGGATTTGTTACCTTTGGCTCACACGATGCTGCTATAAGATGTGCTGACAGCATTACTGGTACAGAATTGGGTGAAGGTGACAAAAAGGCCAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTATCGCCCGAGTCGCGGATCTGCAATAATGTCAAGGCCTTCTTGGAGCAGCCGACCTGCACCCCGTAGTTTCTCGTCGCGTGGGGTAAGAGGAATTGGAAGTCGTGCTCCGCCAATCAGGTCTATCAGTGCTAGAGATAGACGCCCTGTCATGTCTATACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGATGCTGCATATTCAAAAAGCAGTGTGAAGAGAGATTATGGTCGGCGTGATGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGGATGACCTCTGAAAGACGCCCAACTTATAGGGATTATCCACCTCGTGGATCTGACTACTCTGATCTCCCTAGAAGTACTGCTCGTGCTGCACCTAGGAGAGGTTACGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCACCTCCTCCTCCACCCCCTTCCCATCCAAGTTATCGTGAAGGACGCCCTCGTGATTATGATTCTCTATCTGGCTCAAAACGTTCGTACGCTGCCGTGGATGATGTTCCCCCAAGATACGCCGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGAGTATGACTATGGTGGCAGTGCTTCACAGTACGGTGATGCTTATGGTGATAGAGTCGGAAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGGTGTATAGCAGTCGGCAGGGCATGAGTTATGGTGGAGGCTCTTATGGCGGTAATGATGTTGGAGGCATGTATTCATCAAGTTATGGCGGTGATTACGTTTCTCGTGGAAATGATGTTGGTGGCAGCTCATATTCATCAATGTATTCTGGTAGGGGCACGGGTGGCGGTAGCAGTTACATGGGCAGCGGTGGTTCGGGATCTTATTATTGA
Protein sequence

>Msa1309430

MPPKTPKRGSAGSGSKRGGRLSRGTAKSAQNQQQQQSEPVEEKTVIEEEIKVEENLVVEEKPVVEEDNPVVEDKAIDMNQIAPEAVEDANLAKKDEEEVKESIDEYERDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEPEENVGEGDSGEEEVEDGHDEIEGEEDDEHADEKHDRERAEMADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAIMSRPSWSSRPAPRSFSSRGVRGIGSRAPPIRSISARDRRPVMSIPVRSRPLPPPARSYDRRPADAAYSKSSVKRDYGRRDDLPPPRSRVAADYGSRMTSERRPTYRDYPPRGSDYSDLPRSTARAAPRRGYVDDGYSQRYERPPPPPPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGVYSSRQGMSYGGGSYGGNDVGGMYSSSYGGDYVSRGNDVGGSSYSSMYSGRGTGGGSSYMGSGGSGSYY*