AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404410 MtrunA17_Chr8g0335981 99.091 770 7 0 1 770 1 770 0.0 1528
Msa1404410 MtrunA17_Chr7g0250221 62.547 793 230 15 1 770 1 749 0.0 845
Msa1404410 MtrunA17_Chr8g0372111 57.241 290 120 2 192 477 392 681 2.39e-105 347
Msa1404410 MtrunA17_Chr7g0276201 29.496 278 187 7 175 450 67 337 3.60e-33 134
Msa1404410 MtrunA17_Chr7g0266451 31.148 244 160 5 216 458 102 338 1.21e-29 123
Msa1404410 MtrunA17_Chr4g0026301 29.893 281 187 6 181 458 77 350 6.56e-29 121
Msa1404410 MtrunA17_Chr1g0153181 24.016 254 170 7 217 458 34 276 1.28e-15 81.3
Msa1404410 MtrunA17_Chr4g0068631 30.508 177 102 6 216 378 89 258 2.46e-14 77.0
Msa1404410 MtrunA17_Chr6g0465751 22.134 253 178 6 217 461 27 268 6.26e-13 72.4
Msa1404410 MtrunA17_Chr3g0134141 23.504 234 160 7 217 440 26 250 2.09e-12 70.9
Msa1404410 MtrunA17_Chr2g0288251 23.792 269 171 10 217 459 62 322 2.74e-12 69.7
Msa1404410 MtrunA17_Chr7g0265341 22.353 255 175 6 217 459 72 315 8.29e-12 68.9
Msa1404410 MtrunA17_Chr4g0044541 27.313 227 131 6 200 402 200 416 3.48e-11 67.0
Msa1404410 MtrunA17_Chr0c09g0493511 22.222 270 185 7 210 460 26 289 3.65e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404410 AT2G44710.2 57.548 775 281 13 26 766 19 779 0.0 709
Msa1404410 AT2G44710.1 57.548 775 281 13 26 766 19 779 0.0 709
Msa1404410 AT2G44710.4 60.993 705 233 11 90 766 4 694 0.0 701
Msa1404410 AT2G44710.3 52.668 431 110 13 390 766 25 415 4.01e-109 341
Msa1404410 AT4G00830.2 30.225 311 189 9 153 450 53 348 4.74e-33 134
Msa1404410 AT4G00830.1 30.225 311 189 9 153 450 53 348 4.74e-33 134
Msa1404410 AT4G00830.6 30.225 311 189 9 153 450 53 348 4.74e-33 134
Msa1404410 AT4G00830.4 29.582 311 191 9 153 450 53 348 3.24e-31 129
Msa1404410 AT4G00830.3 28.939 311 185 9 153 450 53 340 6.06e-29 122
Msa1404410 AT4G00830.5 28.939 311 185 9 153 450 53 340 6.06e-29 122
Msa1404410 AT3G52660.3 28.490 351 212 8 101 448 10 324 1.05e-18 90.5
Msa1404410 AT3G52660.1 28.490 351 212 8 101 448 10 324 1.05e-18 90.5
Msa1404410 AT3G52660.2 28.490 351 212 8 101 448 10 324 1.05e-18 90.5
Msa1404410 AT2G47310.1 31.667 180 102 5 216 378 111 286 1.23e-15 81.3
Msa1404410 AT4G34110.1 23.622 254 171 6 217 458 38 280 3.52e-15 80.1
Msa1404410 AT4G34110.1 28.241 216 123 5 211 402 211 418 3.51e-11 67.4
Msa1404410 AT4G16280.3 27.586 174 111 3 216 378 121 290 2.89e-13 73.6
Msa1404410 AT3G16380.1 25.097 259 165 7 217 459 23 268 4.71e-13 73.2
Msa1404410 AT4G16280.2 27.586 174 111 3 216 378 121 290 4.74e-13 73.6
Msa1404410 AT1G49760.1 22.742 299 188 8 210 473 128 418 5.67e-13 73.2
Msa1404410 AT1G49760.2 22.742 299 188 8 210 473 128 418 5.67e-13 73.2
Msa1404410 AT4G16280.4 27.586 174 111 3 216 378 46 215 6.14e-13 73.2
Msa1404410 AT3G13224.2 31.034 145 83 5 216 348 20 159 4.20e-12 68.9
Msa1404410 AT2G36660.1 23.320 253 173 6 217 459 26 267 5.14e-12 70.1
Msa1404410 AT1G22760.1 21.933 269 176 8 217 459 138 398 5.67e-12 69.7
Msa1404410 AT1G71770.1 23.256 258 172 7 217 460 61 306 7.33e-12 69.7
Msa1404410 AT1G71770.2 23.256 258 172 7 217 460 61 306 7.33e-12 69.7
Msa1404410 AT3G13224.3 31.034 145 83 5 216 348 11 150 1.45e-11 67.4
Msa1404410 AT3G13224.1 31.034 145 83 5 216 348 20 159 8.06e-11 63.5

Find 336 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCTGCAATTTCAGATTAA+TGG 0.120288 tig0023062:-53615 Msa1404410:intron
GCTATTTATAGCATTATATT+TGG 0.124459 tig0023062:-50662 Msa1404410:three_prime_UTR
TGCGATCCACAAAGAAATTT+AGG 0.171647 tig0023062:-55375 Msa1404410:five_prime_UTR
CTATATGAATACACTATTTA+TGG 0.194206 tig0023062:+49590 None:intergenic
ACTCAACATTGCTCAGAAAT+AGG 0.200598 tig0023062:+49485 None:intergenic
CCTCTTCTGCAGTCTCTTAA+AGG 0.203548 tig0023062:+53256 None:intergenic
CTGAAAGACGCCCAACTTAT+AGG 0.217326 tig0023062:-51934 Msa1404410:CDS
CTTGTTTGGTTAAGGATTAA+TGG 0.234976 tig0023062:-50391 Msa1404410:three_prime_UTR
TTCTTTCAATTTGCTATCAT+TGG 0.237245 tig0023062:-49163 Msa1404410:three_prime_UTR
AAGGAGAAGTTGAAGCATTA+TGG 0.243038 tig0023062:-53386 Msa1404410:CDS
TTGGGATGTGTTGGTGTTGT+AGG 0.249916 tig0023062:-50177 Msa1404410:three_prime_UTR
GGACAGTGATACCCTCTATT+TGG 0.255911 tig0023062:-53565 Msa1404410:CDS
GGCAGCCGAAGTTCTATTTC+TGG 0.258447 tig0023062:-51349 Msa1404410:CDS
AGTAGAGTTGCTGCAGATTA+TGG 0.261306 tig0023062:-51971 Msa1404410:CDS
AAACCGTGGATTTGCATTCT+TGG 0.273692 tig0023062:-53309 Msa1404410:CDS
GCAGCACGAGCAGTACTTCT+AGG 0.280985 tig0023062:+51875 None:intergenic
ATGACGGCCTTTGAAGCTTA+TGG 0.290365 tig0023062:-50723 Msa1404410:exon
CGTGATTATGATTCTCTATC+TGG 0.292725 tig0023062:-51752 Msa1404410:CDS
ATGTTATGAAGCTTACAATT+TGG 0.313318 tig0023062:-50700 Msa1404410:three_prime_UTR
GAGAGACGAGCGTCTAGATT+TGG 0.313762 tig0023062:-54208 Msa1404410:CDS
TTACATGGGCAGCGGTGGTT+CGG 0.320424 tig0023062:-50968 Msa1404410:CDS
CAATAATGTCAAGGCCTTCT+TGG 0.321408 tig0023062:-52318 Msa1404410:CDS
GTAGAAGATTCTAATGATAA+AGG 0.321671 tig0023062:-53335 Msa1404410:CDS
GCGATCCACAAAGAAATTTA+GGG 0.321865 tig0023062:-55374 Msa1404410:five_prime_UTR
AAATAATTACTATGCGAAAT+CGG 0.321968 tig0023062:+49992 None:intergenic
ACAGATCCGACATAATAAAT+TGG 0.322938 tig0023062:-50756 Msa1404410:intron
AGAAGATGAAGAGGAGGTTA+AGG 0.326174 tig0023062:-54250 Msa1404410:CDS
CGGAATCTTCTGAAGAAATA+TGG 0.327291 tig0023062:-52650 Msa1404410:CDS
GACTATGGATTTGTTACCTT+TGG 0.329610 tig0023062:-52575 Msa1404410:CDS
CAGCATTACTGGTACAGAAT+TGG 0.331570 tig0023062:-52522 Msa1404410:CDS
AGTAATAAGAATACTACTTC+AGG 0.334390 tig0023062:-50228 Msa1404410:three_prime_UTR
GTTATTGAATTTGTGATGTA+TGG 0.337285 tig0023062:-50567 Msa1404410:three_prime_UTR
TGCTCCAATACCATTTCATT+TGG 0.338317 tig0023062:-50439 Msa1404410:three_prime_UTR
GTCTTCGGAGGCATTGTTAT+TGG 0.339548 tig0023062:+55339 None:intergenic
TTGATGCACTTCCTCCTTCA+TGG 0.343649 tig0023062:-52688 Msa1404410:CDS
AGATGTGCTGACAGCATTAC+TGG 0.343835 tig0023062:-52533 Msa1404410:CDS
ATTGGGTGAAGGTGACAAAA+AGG 0.345418 tig0023062:-52504 Msa1404410:intron
CATATTTCTTCAGAAGATTC+CGG 0.347028 tig0023062:+52651 None:intergenic
ACTCTAGTTTAGCTCTTGTT+AGG 0.347194 tig0023062:-49234 Msa1404410:three_prime_UTR
GGCTAGAGATGCTACTTGTT+TGG 0.347463 tig0023062:-50405 Msa1404410:three_prime_UTR
AGATGCTACTTGTTTGGTTA+AGG 0.350748 tig0023062:-50399 Msa1404410:three_prime_UTR
CGAAACCCTAAATTTCTTTG+TGG 0.355378 tig0023062:+55369 None:intergenic
CTATTTATAGCATTATATTT+GGG 0.356269 tig0023062:-50661 Msa1404410:three_prime_UTR
TTAAGAAGATATTGCTCGTT+AGG 0.359179 tig0023062:-49540 Msa1404410:three_prime_UTR
TCTGCAGCAACTCTACTTCT+TGG 0.363608 tig0023062:+51977 None:intergenic
TGAAAGACGCCCAACTTATA+GGG 0.364958 tig0023062:-51933 Msa1404410:CDS
GTTGGTGAAGAAGGTGATTC+AGG 0.368423 tig0023062:-54063 Msa1404410:CDS
AAAGAGATGTTTAGTTACTT+TGG 0.370338 tig0023062:-50317 Msa1404410:three_prime_UTR
TCACTGGGCGTGGGTTATTA+CGG 0.372222 tig0023062:-49371 Msa1404410:three_prime_UTR
TGTTAGCTAACATACCTATA+TGG 0.373043 tig0023062:-49269 Msa1404410:three_prime_UTR
TACATGGGCAGCGGTGGTTC+GGG 0.376852 tig0023062:-50967 Msa1404410:CDS
AAGAATTTGAAGTATTTGTT+GGG 0.376985 tig0023062:-53891 Msa1404410:CDS
TCTGCAAATGAAACCTTTGC+AGG 0.379216 tig0023062:+53209 None:intergenic
AAAGAATTTGAAGTATTTGT+TGG 0.379388 tig0023062:-53892 Msa1404410:CDS
TCATATTCATCAATGTATTC+TGG 0.380188 tig0023062:-51015 Msa1404410:CDS
CTCAACATTGCTCAGAAATA+GGG 0.381387 tig0023062:+49486 None:intergenic
AGCAGTGTGAAGAGAGATTA+TGG 0.381697 tig0023062:-52022 Msa1404410:CDS
GAACCTCTCTTTGGCGTCTT+CGG 0.383318 tig0023062:+55324 None:intergenic
TCGCGTGGGGTAAGAGGAAT+TGG 0.383971 tig0023062:-52265 Msa1404410:CDS
AATTTAATTAATATATTCAC+TGG 0.386689 tig0023062:-49387 Msa1404410:three_prime_UTR
ACTCAAGACAACCAACGATA+TGG 0.390525 tig0023062:+49626 None:intergenic
GATTAAAGGTGCAATCGAAC+GGG 0.391043 tig0023062:+49062 None:intergenic
TTCTCGTCGCGTGGGGTAAG+AGG 0.394358 tig0023062:-52271 Msa1404410:CDS
TGTTTGCTTTGCTGTACTGC+AGG 0.395507 tig0023062:-49314 Msa1404410:three_prime_UTR
CATAATAAATTGGCTGCAAT+AGG 0.395636 tig0023062:-50746 Msa1404410:CDS
CTGTCCAAATGAAATGGTAT+TGG 0.397342 tig0023062:+50435 None:intergenic
TGAAAATAAAGTAGCAGAAA+AGG 0.404059 tig0023062:-49868 Msa1404410:three_prime_UTR
ATCACCGTCTTCTCTTCAAC+AGG 0.406089 tig0023062:+55216 None:intergenic
CAACTCCCGACCCACATTGT+TGG 0.407711 tig0023062:-49686 Msa1404410:three_prime_UTR
GACAGTGATACCCTCTATTT+GGG 0.407780 tig0023062:-53564 Msa1404410:CDS
TCAAGCTAGGTAGGGTGGGG+GGG 0.409790 tig0023062:+49815 None:intergenic
ATAGCTTTATCTTCAACAAC+AGG 0.413355 tig0023062:+55126 None:intergenic
ATCAAGCTAGGTAGGGTGGG+GGG 0.414623 tig0023062:+49814 None:intergenic
CAGAAGAGGGATGTTACGTT+TGG 0.419497 tig0023062:-53242 Msa1404410:CDS
TGCATATGTTTCCCAAATAG+AGG 0.423070 tig0023062:+53553 None:intergenic
AATAATTACTATGCGAAATC+GGG 0.424824 tig0023062:+49993 None:intergenic
TCTGGTAGGGGCACGGGTGG+CGG 0.427281 tig0023062:-50997 Msa1404410:CDS
TCACAGTACGGTGATGCTTA+TGG 0.427536 tig0023062:-51500 Msa1404410:CDS
GGAAGATCTAGTCTTGGATA+TGG 0.430356 tig0023062:-51376 Msa1404410:CDS
GAAGTCGTGCTCCGCCAATC+AGG 0.430648 tig0023062:-52243 Msa1404410:CDS
TTAATTAAATTATTAAATGC+AGG 0.434111 tig0023062:+49399 None:intergenic
GCAAATGAACCAACATAAAT+CGG 0.435326 tig0023062:-49776 Msa1404410:three_prime_UTR
GAGGTGGCCTCTCATACCTT+TGG 0.437240 tig0023062:+51819 None:intergenic
AGCTTGATTTAGAAAAGCTC+GGG 0.442733 tig0023062:-49799 Msa1404410:three_prime_UTR
CTACCCGCTGAACCTCTCTT+TGG 0.444963 tig0023062:+55315 None:intergenic
GGGTGGCGGTAGCAGTTACA+TGG 0.445852 tig0023062:-50983 Msa1404410:CDS
ATTAATATATTCACTGGGCG+TGG 0.447220 tig0023062:-49381 Msa1404410:three_prime_UTR
GACAACCAACGATATGGTTC+GGG 0.447264 tig0023062:+49632 None:intergenic
AGACAACCAACGATATGGTT+CGG 0.450861 tig0023062:+49631 None:intergenic
CGTTCATATATGCATATGAA+TGG 0.451547 tig0023062:-49208 Msa1404410:three_prime_UTR
CATGTCAATTCAAGCTATCT+CGG 0.454846 tig0023062:-50617 Msa1404410:three_prime_UTR
CTTCAGTAGCATCCTTGTCT+AGG 0.455597 tig0023062:+53866 None:intergenic
GTGAACATTTATATCCATAT+AGG 0.457194 tig0023062:+49255 None:intergenic
TGATGAGAAGGAAATTGAAC+AGG 0.459626 tig0023062:-54136 Msa1404410:CDS
GGTAGTGGCCTACTTCTAAC+TGG 0.460415 tig0023062:+52181 None:intergenic
ACTCCAATCGAGCTCTTGAT+TGG 0.460826 tig0023062:+51543 None:intergenic
TCTGCTGAATGTATCAAAGT+TGG 0.463094 tig0023062:-50360 Msa1404410:three_prime_UTR
GCTCGATTGGAGTATGACTA+TGG 0.463175 tig0023062:-51533 Msa1404410:CDS
TGATGCACTTCCTCCTTCAT+GGG 0.463181 tig0023062:-52687 Msa1404410:CDS
ATGTATTCTGGTAGGGGCAC+GGG 0.463809 tig0023062:-51003 Msa1404410:CDS
TGGTCTCTGTCCAAATGAAA+TGG 0.464020 tig0023062:+50429 None:intergenic
GATCTAGCTGGAGGAGGTAG+TGG 0.465085 tig0023062:+52166 None:intergenic
AGCATTACTGGTACAGAATT+GGG 0.466603 tig0023062:-52521 Msa1404410:CDS
AGTCGGCAGGGCATGAGTTA+TGG 0.470717 tig0023062:-51301 Msa1404410:CDS
CAACAATGTGGGTCGGGAGT+TGG 0.472402 tig0023062:+49687 None:intergenic
GGTTCGGGATCTTATTATTG+AGG 0.473492 tig0023062:-50952 Msa1404410:intron
TTCAGGCCAAAGTGAGGGCT+AGG 0.475005 tig0023062:-52414 Msa1404410:intron
AAATCAAGCTAGGTAGGGTG+GGG 0.475225 tig0023062:+49812 None:intergenic
ATTGACAAAGAAATCACAAA+TGG 0.476354 tig0023062:-49751 Msa1404410:three_prime_UTR
GCTGCTCGTAGAAAGGACTA+TGG 0.479913 tig0023062:-52590 Msa1404410:CDS
GAGTATGAACCTGAGGAGTA+TGG 0.481139 tig0023062:-54171 Msa1404410:CDS
ATGTGGTGTTACTCCGAGTC+AGG 0.485653 tig0023062:-53586 Msa1404410:CDS
TTGGGGTTGTGACTGAGGTC+AGG 0.486683 tig0023062:-53816 Msa1404410:CDS
AGCTATCTCGGGTCTTCTCT+AGG 0.487176 tig0023062:-50605 Msa1404410:three_prime_UTR
GGTGGATAATCCCTATAAGT+TGG 0.487528 tig0023062:+51923 None:intergenic
TTCATCAATGTATTCTGGTA+GGG 0.489027 tig0023062:-51010 Msa1404410:CDS
TAACATTATCCACCCACAAA+TGG 0.489703 tig0023062:+50474 None:intergenic
ATTATCTTGCAGTCCACCTC+AGG 0.491057 tig0023062:+50063 None:intergenic
TTTCATATTCACTTGAGTGA+TGG 0.491336 tig0023062:+49886 None:intergenic
TGGGGTGTATAGCAGTCGGC+AGG 0.491775 tig0023062:-51314 Msa1404410:CDS
AAACTATGCAGGTTACTAGA+TGG 0.492265 tig0023062:+50016 None:intergenic
GGGCGTCCTTCACGATAACT+TGG 0.494376 tig0023062:+51776 None:intergenic
CCCCGTAGTTTCTCGTCGCG+TGG 0.495353 tig0023062:-52280 Msa1404410:CDS
GACAACCAACAATGTGGGTC+GGG 0.497247 tig0023062:+49681 None:intergenic
GGTGATTGAAGAAGAGATCA+AGG 0.499484 tig0023062:-55199 Msa1404410:CDS
CATGCCAGCTGCTCGTAGAA+AGG 0.501010 tig0023062:-52597 Msa1404410:CDS
GGCATGTATTCATCAAGTTA+TGG 0.501599 tig0023062:-51163 Msa1404410:CDS
TAGCTTGATTTAGAAAAGCT+CGG 0.505512 tig0023062:-49800 Msa1404410:three_prime_UTR
AAATGTTGAGGATATAACTT+TGG 0.505813 tig0023062:-53357 Msa1404410:CDS
GTGGATAATCCCTATAAGTT+GGG 0.506076 tig0023062:+51924 None:intergenic
TTGATTTATGATACCATTTG+TGG 0.506608 tig0023062:-50487 Msa1404410:three_prime_UTR
CTTCTATCATAAGATCTAGC+TGG 0.506659 tig0023062:+52154 None:intergenic
TTAGCATCTTCTACAGCCTC+AGG 0.507277 tig0023062:+55084 None:intergenic
AGATGGTCATGATGAAATTG+AGG 0.507610 tig0023062:-54025 Msa1404410:CDS
TGTCTATACCAGTTAGAAGT+AGG 0.507727 tig0023062:-52189 Msa1404410:CDS
CTTTAGCTTCTGCATTGTAG+TGG 0.508113 tig0023062:-49915 Msa1404410:three_prime_UTR
ATTCATCAATGTATTCTGGT+AGG 0.509049 tig0023062:-51011 Msa1404410:CDS
CGTGGAAAACATGTTGGTCG+TGG 0.512930 tig0023062:-52367 Msa1404410:CDS
TAAATCAAGCTAGGTAGGGT+GGG 0.514078 tig0023062:+49811 None:intergenic
GAACTGATAATATTTGCTGC+TGG 0.515056 tig0023062:-50112 Msa1404410:three_prime_UTR
ACAAATGGTATCATAAATCA+AGG 0.517968 tig0023062:+50489 None:intergenic
AGGCCACTTCAGAGAGGCCG+TGG 0.518391 tig0023062:-52385 Msa1404410:CDS
TTGAAAAGATTGAGCTTGCA+AGG 0.519002 tig0023062:-52622 Msa1404410:CDS
ATGAATACACTATTTATGGT+AGG 0.519124 tig0023062:+49594 None:intergenic
ACGATAACTTGGATGGGAAG+GGG 0.520335 tig0023062:+51787 None:intergenic
TGTCAATGACCGATTTATGT+TGG 0.520554 tig0023062:+49767 None:intergenic
TAGTCCTTTCTACGAGCAGC+TGG 0.522172 tig0023062:+52593 None:intergenic
TCGCCAATCAAGAGCTCGAT+TGG 0.522669 tig0023062:-51546 Msa1404410:CDS
CACGATAACTTGGATGGGAA+GGG 0.522951 tig0023062:+51786 None:intergenic
TTGCAGCCAATTTATTATGT+CGG 0.523352 tig0023062:+50750 None:intergenic
GTTTGCTTTGCTGTACTGCA+GGG 0.523702 tig0023062:-49313 Msa1404410:three_prime_UTR
GGCGGTGATTACGTTTCTCG+TGG 0.524345 tig0023062:-51142 Msa1404410:CDS
CATGGGATGAAGATTATGTC+CGG 0.524547 tig0023062:-52670 Msa1404410:CDS
TTAATATATTCACTGGGCGT+GGG 0.524594 tig0023062:-49380 Msa1404410:three_prime_UTR
AAGAGAGGTTCAGCGGGTAG+TGG 0.526935 tig0023062:-55312 Msa1404410:CDS
GAAGAAAATGTTGGTGAAGA+AGG 0.528899 tig0023062:-54072 Msa1404410:CDS
GGATTATCTTCTTCCACCAC+AGG 0.529137 tig0023062:+55147 None:intergenic
CCCCACGCGACGAGAAACTA+CGG 0.529221 tig0023062:+52278 None:intergenic
CCTCTCTTTGGCGTCTTCGG+AGG 0.529474 tig0023062:+55327 None:intergenic
GACGAGAAACTACGGGGTGC+AGG 0.529835 tig0023062:+52286 None:intergenic
TGATGAAATTGAGGGAGAAG+AGG 0.531641 tig0023062:-54016 Msa1404410:CDS
TGATTTATGATACCATTTGT+GGG 0.531763 tig0023062:-50486 Msa1404410:three_prime_UTR
TTCCTCCCGCTCAGATGCAA+TGG 0.532515 tig0023062:-53282 Msa1404410:CDS
AATGTATTCTGGTAGGGGCA+CGG 0.532761 tig0023062:-51004 Msa1404410:CDS
TCATATAGTATACATCTTGA+AGG 0.532816 tig0023062:-49575 Msa1404410:three_prime_UTR
ATGTCAATTCAAGCTATCTC+GGG 0.533625 tig0023062:-50616 Msa1404410:three_prime_UTR
TGATTAAAGGTGCAATCGAA+CGG 0.534453 tig0023062:+49061 None:intergenic
GTCCTTCACGATAACTTGGA+TGG 0.535270 tig0023062:+51780 None:intergenic
TGGGTTATTACGGACTGACT+TGG 0.535832 tig0023062:-49361 Msa1404410:three_prime_UTR
CTAAATCAAGCTAGGTAGGG+TGG 0.535850 tig0023062:+49810 None:intergenic
AATCAAGCTAGGTAGGGTGG+GGG 0.536002 tig0023062:+49813 None:intergenic
TCTAGTCTTGGATATGGTAG+TGG 0.536113 tig0023062:-51370 Msa1404410:CDS
GAAGGAAATTGAACAGGAAG+AGG 0.536425 tig0023062:-54130 Msa1404410:CDS
TGAGGTGGGAGATGAAGTTG+AGG 0.536948 tig0023062:-54103 Msa1404410:CDS
TTTCCACGGCCTCTCTGAAG+TGG 0.538452 tig0023062:+52382 None:intergenic
ATCTCGGGTCTTCTCTAGGT+GGG 0.538541 tig0023062:-50601 Msa1404410:three_prime_UTR
GGTGGCAGTGCTTCACAGTA+CGG 0.540610 tig0023062:-51512 Msa1404410:CDS
TTTGACAGAAGATGAAGAGG+AGG 0.540760 tig0023062:-54256 Msa1404410:intron
ATAACATCCATAAGCTTCAA+AGG 0.541184 tig0023062:+50716 None:intergenic
TCCTTCACGATAACTTGGAT+GGG 0.541440 tig0023062:+51781 None:intergenic
TGACCGTGAGCGTGCGGAGA+TGG 0.541802 tig0023062:-53968 Msa1404410:CDS
GGATGACGAGCATGCTGATG+AGG 0.542036 tig0023062:-53995 Msa1404410:CDS
ACAAGTAGCATCTCTAGCCT+TGG 0.543111 tig0023062:+50409 None:intergenic
GGCATCCATTGCATCTGAGC+GGG 0.544260 tig0023062:+53277 None:intergenic
AAGTGAGGGCTAGGTTATCA+AGG 0.544468 tig0023062:-52405 Msa1404410:CDS
TCATCCACGTAACCTCTCCT+AGG 0.544554 tig0023062:+51851 None:intergenic
TGAATACACTATTTATGGTA+GGG 0.545218 tig0023062:+49595 None:intergenic
CTAGCACTGATAGACCTGAT+TGG 0.546036 tig0023062:+52229 None:intergenic
ATATGGTTCGGGAGTTGGAA+AGG 0.546047 tig0023062:+49643 None:intergenic
ACGCCAAAGAGAGGTTCAGC+GGG 0.548771 tig0023062:-55318 Msa1404410:CDS
TTTAGCTTCTGCATTGTAGT+GGG 0.549715 tig0023062:-49914 Msa1404410:three_prime_UTR
GCAGCAACTCTACTTCTTGG+AGG 0.550856 tig0023062:+51980 None:intergenic
GCGAAATCGGGAAACTATGC+AGG 0.552820 tig0023062:+50005 None:intergenic
GCAGGTCGGCTGCTCCAAGA+AGG 0.553373 tig0023062:+52304 None:intergenic
CCTTTAAGAGACTGCAGAAG+AGG 0.553892 tig0023062:-53256 Msa1404410:CDS
TGATAACCTAGCCCTCACTT+TGG 0.554695 tig0023062:+52408 None:intergenic
AGCGGGTAGTGGTTCAAAGA+GGG 0.555066 tig0023062:-55301 Msa1404410:CDS
GCATATGTTTCCCAAATAGA+GGG 0.556114 tig0023062:+53554 None:intergenic
CGATAACTTGGATGGGAAGG+GGG 0.557684 tig0023062:+51788 None:intergenic
TTTCTAAATCAAGCTAGGTA+GGG 0.557945 tig0023062:+49807 None:intergenic
TAAAATGAATACTTATGCAT+AGG 0.558067 tig0023062:+49439 None:intergenic
GGGGACTATCGCCCGAGTCG+CGG 0.559741 tig0023062:-52346 Msa1404410:CDS
GTGTTGTAGGATTTGTGACA+TGG 0.559819 tig0023062:-50164 Msa1404410:three_prime_UTR
ACGGTGATGCTTATGGTGAT+AGG 0.560365 tig0023062:-51493 Msa1404410:intron
ACAAGGGATTTGCATTCTTG+CGG 0.561118 tig0023062:-53765 Msa1404410:CDS
CAGCACGAGCAGTACTTCTA+GGG 0.561773 tig0023062:+51876 None:intergenic
TCACGATAACTTGGATGGGA+AGG 0.562072 tig0023062:+51785 None:intergenic
TCATCAATGTATTCTGGTAG+GGG 0.563889 tig0023062:-51009 Msa1404410:CDS
TCTTATGATAGAAGACCAGC+TGG 0.564284 tig0023062:-52145 Msa1404410:intron
ACAGGAAGAGGGACATGAGG+TGG 0.565462 tig0023062:-54118 Msa1404410:CDS
TATGGTTCGGGAGTTGGAAA+GGG 0.565701 tig0023062:+49644 None:intergenic
AGACGAGCGTCTAGATTTGG+AGG 0.566469 tig0023062:-54205 Msa1404410:CDS
TTGCTGCAGATTATGGATCA+AGG 0.567085 tig0023062:-51964 Msa1404410:CDS
GGCGAGGAAGAAGTCGAAGA+TGG 0.567156 tig0023062:-54042 Msa1404410:CDS
AGGAGAGGTTACGTGGATGA+TGG 0.568734 tig0023062:-51848 Msa1404410:CDS
GGGTGATGAAATTATGTCAC+AGG 0.569604 tig0023062:-53171 Msa1404410:intron
AGAATTTGAAGTATTTGTTG+GGG 0.569779 tig0023062:-53890 Msa1404410:CDS
GTGGAAAACATGTTGGTCGT+GGG 0.572181 tig0023062:-52366 Msa1404410:CDS
AGCAGCATCGTGTGAGCCAA+AGG 0.572202 tig0023062:+52559 None:intergenic
TATGGCGGTAATGATGTTGG+AGG 0.573247 tig0023062:-51184 Msa1404410:CDS
TCAACCCCACCATACTCCTC+AGG 0.573263 tig0023062:+54162 None:intergenic
CAACTCCCGAACCATATCGT+TGG 0.573646 tig0023062:-49637 Msa1404410:three_prime_UTR
GTTCCTGTGATGTAGGTTGG+TGG 0.574215 tig0023062:-51042 Msa1404410:intron
GATGGTCATGATGAAATTGA+GGG 0.574247 tig0023062:-54024 Msa1404410:CDS
TGCAGAAGCTAAAGATTCTG+TGG 0.576513 tig0023062:+49924 None:intergenic
TGGAGTTGATAAGCCTGCAA+AGG 0.576604 tig0023062:-53222 Msa1404410:CDS
AGAAGAGAATCTCGTTGTTG+AGG 0.578538 tig0023062:-55175 Msa1404410:CDS
ATTCTTGCGGTTTGAAAATG+TGG 0.580185 tig0023062:-53752 Msa1404410:CDS
TATTCTGGTAGGGGCACGGG+TGG 0.580301 tig0023062:-51000 Msa1404410:CDS
AGCAGTTACATGGGCAGCGG+TGG 0.581899 tig0023062:-50973 Msa1404410:CDS
GGACTCAAGTTAGTGAGCGA+TGG 0.582663 tig0023062:-50546 Msa1404410:three_prime_UTR
CTTCTTTCAGGCCAAAGTGA+GGG 0.583789 tig0023062:-52419 Msa1404410:intron
TCTTCTTTCAGGCCAAAGTG+AGG 0.584613 tig0023062:-52420 Msa1404410:intron
ATAAGTTGGGCGTCTTTCAG+AGG 0.585266 tig0023062:+51937 None:intergenic
TCTTATGGCGGTAATGATGT+TGG 0.585997 tig0023062:-51187 Msa1404410:CDS
GGTAGCAGTTACATGGGCAG+CGG 0.586041 tig0023062:-50976 Msa1404410:CDS
AGTATACATCTTGAAGGAGG+AGG 0.586205 tig0023062:-49569 Msa1404410:three_prime_UTR
GCGTGCGGAGATGGCTGATG+TGG 0.586432 tig0023062:-53959 Msa1404410:CDS
CTTTAAGAGACTGCAGAAGA+GGG 0.587293 tig0023062:-53255 Msa1404410:CDS
ATTCCAAGAATGCAAATCCA+CGG 0.588526 tig0023062:+53306 None:intergenic
ATTATTGCAGATCCGCGACT+CGG 0.588971 tig0023062:+52334 None:intergenic
TGAATGTACTTCATGCACCC+TGG 0.589383 tig0023062:-49843 Msa1404410:three_prime_UTR
ATGAACCTGAGGAGTATGGT+GGG 0.592467 tig0023062:-54167 Msa1404410:CDS
CTAACTGGTATAGACATGAC+AGG 0.592654 tig0023062:+52196 None:intergenic
TTCCGATCAGGCTCTTATGG+CGG 0.592662 tig0023062:-51199 Msa1404410:intron
TCATAAGATCTAGCTGGAGG+AGG 0.592974 tig0023062:+52160 None:intergenic
TTATGGAGTTACAAATGTTG+AGG 0.593298 tig0023062:-53369 Msa1404410:CDS
GCAACTCTACTTCTTGGAGG+TGG 0.594233 tig0023062:+51983 None:intergenic
TACTCCTCAGGTTCATACTC+AGG 0.594399 tig0023062:+54174 None:intergenic
ATTTAATTAATATATTCACT+GGG 0.594789 tig0023062:-49386 Msa1404410:three_prime_UTR
CACATGGGGTGTATAGCAGT+CGG 0.596161 tig0023062:-51318 Msa1404410:CDS
CGGCAGGGCATGAGTTATGG+TGG 0.596513 tig0023062:-51298 Msa1404410:CDS
AGGGTATCACTGTCCTGACT+CGG 0.597119 tig0023062:+53573 None:intergenic
TTATTGCAGATCCGCGACTC+GGG 0.598224 tig0023062:+52335 None:intergenic
CTTGACCAGAAATAGAACTT+CGG 0.598989 tig0023062:+51344 None:intergenic
ATTTCTGGTCAAGATTCACA+TGG 0.599253 tig0023062:-51334 Msa1404410:CDS
ATCGTGAAGTTGTGAAGGAG+AGG 0.601698 tig0023062:-53924 Msa1404410:CDS
TTGTGAAGGAGAGGCGAAAG+CGG 0.603327 tig0023062:-53915 Msa1404410:CDS
CAGCGGGTAGTGGTTCAAAG+AGG 0.603447 tig0023062:-55302 Msa1404410:CDS
TGGGAAACATATGCAAAACA+TGG 0.603494 tig0023062:-53545 Msa1404410:CDS
GGAACATCGTGAAGTTGTGA+AGG 0.603844 tig0023062:-53929 Msa1404410:CDS
GAAGAACCTGAAGAAAATGT+TGG 0.605476 tig0023062:-54081 Msa1404410:CDS
TGATTGGCGAGCACCAGTAT+CGG 0.605757 tig0023062:+51559 None:intergenic
AGAGTCGGAAGATCTAGTCT+TGG 0.608797 tig0023062:-51382 Msa1404410:CDS
CCGTAGTTTCTCGTCGCGTG+GGG 0.609247 tig0023062:-52278 Msa1404410:CDS
AGACAACCAACAATGTGGGT+CGG 0.609812 tig0023062:+49680 None:intergenic
AGAGGCCGTGGAAAACATGT+TGG 0.610472 tig0023062:-52373 Msa1404410:CDS
CCTCCGAAGACGCCAAAGAG+AGG 0.610557 tig0023062:-55327 Msa1404410:CDS
TGGATGATGGTTACAGCCAA+AGG 0.611800 tig0023062:-51835 Msa1404410:CDS
CAGGAAGAGGGACATGAGGT+GGG 0.612912 tig0023062:-54117 Msa1404410:CDS
CAGATTAATGGAAAACAATG+TGG 0.614039 tig0023062:-53603 Msa1404410:CDS
ATCCATTGCATCTGAGCGGG+AGG 0.615124 tig0023062:+53280 None:intergenic
TACTGAAGATGATCTGAGGA+AGG 0.616779 tig0023062:-53851 Msa1404410:CDS
ACATAATCTTCATCCCATGA+AGG 0.617754 tig0023062:+52674 None:intergenic
TCCCATCCAAGTTATCGTGA+AGG 0.617871 tig0023062:-51782 Msa1404410:CDS
TGAACCTGTTGAAGAGAAGA+CGG 0.620053 tig0023062:-55220 Msa1404410:CDS
GCGGGTAGTGGTTCAAAGAG+GGG 0.620078 tig0023062:-55300 Msa1404410:CDS
TATCTCGGGTCTTCTCTAGG+TGG 0.620442 tig0023062:-50602 Msa1404410:three_prime_UTR
TTTCATTTGGACAGAGACCA+AGG 0.620910 tig0023062:-50426 Msa1404410:three_prime_UTR
GCACTGATAGACCTGATTGG+CGG 0.621354 tig0023062:+52232 None:intergenic
TATGAATCAAATTGCTCCTG+AGG 0.621990 tig0023062:-55100 Msa1404410:CDS
GGAGCATGACCGTGAGCGTG+CGG 0.623217 tig0023062:-53974 Msa1404410:CDS
TGGGGTTGACTATGATGAGA+AGG 0.623447 tig0023062:-54148 Msa1404410:CDS
TTTCTGGTCAAGATTCACAT+GGG 0.629433 tig0023062:-51333 Msa1404410:CDS
AAGGAAATTGAACAGGAAGA+GGG 0.629624 tig0023062:-54129 Msa1404410:CDS
CTCAAGACAACCAACAATGT+GGG 0.630768 tig0023062:+49676 None:intergenic
GTGTGAAGAGAGATTATGGT+CGG 0.631539 tig0023062:-52018 Msa1404410:CDS
AGAAACTACGGGGTGCAGGT+CGG 0.632474 tig0023062:+52290 None:intergenic
ATTAAAGGTGCAATCGAACG+GGG 0.635393 tig0023062:+49063 None:intergenic
TGAAGTTGGGGTTGTGACTG+AGG 0.635514 tig0023062:-53821 Msa1404410:CDS
CAGGGCATGAGTTATGGTGG+AGG 0.638372 tig0023062:-51295 Msa1404410:intron
AATTGGCTGCAATAGGATGA+CGG 0.638558 tig0023062:-50739 Msa1404410:exon
GTTACAGCCAAAGGTATGAG+AGG 0.639419 tig0023062:-51826 Msa1404410:CDS
GTACTGCTCGTGCTGCACCT+AGG 0.640481 tig0023062:-51868 Msa1404410:CDS
AATGATAAAGGAACAAACCG+TGG 0.644326 tig0023062:-53323 Msa1404410:CDS
ACTCAAGACAACCAACAATG+TGG 0.644646 tig0023062:+49675 None:intergenic
TGGAAAACATGTTGGTCGTG+GGG 0.645687 tig0023062:-52365 Msa1404410:CDS
GCGGATCTGCAATAATGTCA+AGG 0.645997 tig0023062:-52327 Msa1404410:CDS
GATGGCTGATGTGGATGAAG+AGG 0.646717 tig0023062:-53950 Msa1404410:CDS
CATATGCAAAACATGGACAA+AGG 0.647157 tig0023062:-53538 Msa1404410:CDS
TGATCCTGAGTATGAACCTG+AGG 0.648209 tig0023062:-54178 Msa1404410:CDS
GACGCCAAAGAGAGGTTCAG+CGG 0.648754 tig0023062:-55319 Msa1404410:CDS
GCTCGTGCTGCACCTAGGAG+AGG 0.649097 tig0023062:-51863 Msa1404410:CDS
ACTGGTACAGAATTGGGTGA+AGG 0.649153 tig0023062:-52515 Msa1404410:CDS
ATGCTACTGAAGATGATCTG+AGG 0.650341 tig0023062:-53855 Msa1404410:CDS
TATAGTATACATCTTGAAGG+AGG 0.651097 tig0023062:-49572 Msa1404410:three_prime_UTR
TAATCTTCATCCCATGAAGG+AGG 0.656027 tig0023062:+52677 None:intergenic
TGAACAGGAAGAGGGACATG+AGG 0.656320 tig0023062:-54121 Msa1404410:CDS
GGGGTGTATAGCAGTCGGCA+GGG 0.660281 tig0023062:-51313 Msa1404410:CDS
GGTGGCGGTAGCAGTTACAT+GGG 0.660439 tig0023062:-50982 Msa1404410:CDS
TGCACCTAGGAGAGGTTACG+TGG 0.661010 tig0023062:-51855 Msa1404410:CDS
GAATTTGAAGTATTTGTTGG+GGG 0.661371 tig0023062:-53889 Msa1404410:CDS
CTATCATAAGATCTAGCTGG+AGG 0.665556 tig0023062:+52157 None:intergenic
TTCTGGTCAAGATTCACATG+GGG 0.667528 tig0023062:-51332 Msa1404410:CDS
TATAGGGATTATCCACCTCG+TGG 0.670506 tig0023062:-51917 Msa1404410:CDS
CCAGTATCGGCGTATCTTGG+GGG 0.678120 tig0023062:+51572 None:intergenic
CGATTGGAGTATGACTATGG+TGG 0.680575 tig0023062:-51530 Msa1404410:CDS
TATGAACCTGAGGAGTATGG+TGG 0.681041 tig0023062:-54168 Msa1404410:CDS
GAGTAGTCAGATCCACGAGG+TGG 0.682031 tig0023062:+51905 None:intergenic
TCTTCTGAAGAAATATGGCG+AGG 0.682225 tig0023062:-52645 Msa1404410:CDS
GTGACATAATTTCATCACCC+GGG 0.686563 tig0023062:+53174 None:intergenic
TGAAGAAGGTGATTCAGGCG+AGG 0.686633 tig0023062:-54058 Msa1404410:CDS
ATGTATTCATCAAGTTATGG+CGG 0.691988 tig0023062:-51160 Msa1404410:CDS
GGTAGTGGTTCAAAGAGGGG+TGG 0.693327 tig0023062:-55297 Msa1404410:CDS
TTTATGATACCATTTGTGGG+TGG 0.694018 tig0023062:-50483 Msa1404410:three_prime_UTR
TGTGACATAATTTCATCACC+CGG 0.700332 tig0023062:+53173 None:intergenic
AGGCATCCATTGCATCTGAG+CGG 0.701954 tig0023062:+53276 None:intergenic
GATAGAGAATCATAATCACG+AGG 0.709014 tig0023062:+51755 None:intergenic
GCTTGATTTAGAAAAGCTCG+GGG 0.709373 tig0023062:-49798 Msa1404410:three_prime_UTR
TAACTGGTATAGACATGACA+GGG 0.713524 tig0023062:+52197 None:intergenic
AGGGGTGGCAGATTATCGAG+AGG 0.718242 tig0023062:-55282 Msa1404410:CDS
GCAAAGCAAACAGAACAGTG+TGG 0.727441 tig0023062:+49325 None:intergenic
ATAGAGAATCATAATCACGA+GGG 0.739313 tig0023062:+51756 None:intergenic
TGAACCTGAGGAGTATGGTG+GGG 0.741917 tig0023062:-54166 Msa1404410:CDS
TTATCAAGGCCACTTCAGAG+AGG 0.757296 tig0023062:-52391 Msa1404410:CDS
TCAGAGTAGTCAGATCCACG+AGG 0.788482 tig0023062:+51902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAAAAATCTTACTTT+TGG + tig0023062:49479-49498 None:intergenic 10.0%
!!! AAAGTTAACTTTTTAAATTA+TGG - tig0023062:49519-49538 Msa1404410:three_prime_UTR 10.0%
!!! ATTGATTTTTTTTATATTTG+GGG - tig0023062:49612-49631 Msa1404410:three_prime_UTR 10.0%
!!! TTTTTGTATGAATTATTTTT+CGG - tig0023062:49945-49964 Msa1404410:three_prime_UTR 10.0%
!!! TTATTATGAATTTACTTTTA+AGG - tig0023062:51689-51708 Msa1404410:intron 10.0%
!!! TATTATGAATTTACTTTTAA+GGG - tig0023062:51690-51709 Msa1404410:intron 10.0%
!! TTAATTAAATTATTAAATGC+AGG + tig0023062:55136-55155 None:intergenic 10.0%
!! AATTTAATTAATATATTCAC+TGG - tig0023062:55145-55164 Msa1404410:CDS 10.0%
!! ATTTAATTAATATATTCACT+GGG - tig0023062:55146-55165 Msa1404410:CDS 10.0%
!!! TTAAATTGTTTATGGATTAT+TGG - tig0023062:49639-49658 Msa1404410:three_prime_UTR 15.0%
!!! TAAATTGTTTATGGATTATT+GGG - tig0023062:49640-49659 Msa1404410:three_prime_UTR 15.0%
!!! TATGGTAATTGTAATTTTTA+AGG - tig0023062:49688-49707 Msa1404410:three_prime_UTR 15.0%
!!! AAAAAAAATTGTTACTTTTG+TGG - tig0023062:51638-51657 Msa1404410:intron 15.0%
!!! ACTTTCATTTATTATTTCTT+AGG - tig0023062:52440-52459 Msa1404410:intron 15.0%
!! AAACATAATAAAAGTAAGTA+TGG + tig0023062:53313-53332 None:intergenic 15.0%
!! CTATTTATAGCATTATATTT+GGG - tig0023062:53871-53890 Msa1404410:CDS 15.0%
!!! ATTTTATTATTACATTCAAG+AGG - tig0023062:54815-54834 Msa1404410:intron 15.0%
!!! TTTTATTATTACATTCAAGA+GGG - tig0023062:54816-54835 Msa1404410:intron 15.0%
!!! TAAATTTTTGAGAGAGAATT+GGG + tig0023062:49102-49121 None:intergenic 20.0%
!! AATTCTCTCTCAAAAATTTA+GGG - tig0023062:49102-49121 Msa1404410:three_prime_UTR 20.0%
!!! AAATTGTTTATGGATTATTG+GGG - tig0023062:49641-49660 Msa1404410:three_prime_UTR 20.0%
!!! AAATTTTAAGGGTTTGAATA+TGG - tig0023062:49670-49689 Msa1404410:three_prime_UTR 20.0%
!!! AGTTTATATTGTTTTGTTGT+AGG - tig0023062:49731-49750 Msa1404410:three_prime_UTR 20.0%
!! TATAATTCATCATTAGATGA+AGG - tig0023062:49805-49824 Msa1404410:three_prime_UTR 20.0%
!!! AAAGAATTTGAAGTATTTGT+TGG - tig0023062:50640-50659 Msa1404410:three_prime_UTR 20.0%
!!! AAGAATTTGAAGTATTTGTT+GGG - tig0023062:50641-50660 Msa1404410:three_prime_UTR 20.0%
!!! TTTTTTGAAGGTTTTTTAAG+CGG - tig0023062:51412-51431 Msa1404410:intron 20.0%
!! AAAATTTGATCAGTAAAATG+AGG + tig0023062:51797-51816 None:intergenic 20.0%
!!! GATCAAATTTTTCAAATTTC+AGG - tig0023062:51806-51825 Msa1404410:CDS 20.0%
!! AAAATGTAAGAATGAATTAC+AGG + tig0023062:53123-53142 None:intergenic 20.0%
!! GCTATTTATAGCATTATATT+TGG - tig0023062:53870-53889 Msa1404410:CDS 20.0%
!!! AGTCAAAAGATGATTTTTTT+TGG - tig0023062:54336-54355 Msa1404410:intron 20.0%
!!! GTCAAAAGATGATTTTTTTT+GGG - tig0023062:54337-54356 Msa1404410:intron 20.0%
!! AAATAATTACTATGCGAAAT+CGG + tig0023062:54543-54562 None:intergenic 20.0%
!! CTATATGAATACACTATTTA+TGG + tig0023062:54945-54964 None:intergenic 20.0%
!! TAAAATGAATACTTATGCAT+AGG + tig0023062:55096-55115 None:intergenic 20.0%
!!! CTAAATTTTTGAGAGAGAAT+TGG + tig0023062:49103-49122 None:intergenic 25.0%
! CAATTCTCTCTCAAAAATTT+AGG - tig0023062:49101-49120 Msa1404410:three_prime_UTR 25.0%
!!! TTGGGGTTTTTGAAATTTTA+AGG - tig0023062:49658-49677 Msa1404410:three_prime_UTR 25.0%
!!! TGGGGTTTTTGAAATTTTAA+GGG - tig0023062:49659-49678 Msa1404410:three_prime_UTR 25.0%
!!! TATTGTTTTGTTGTAGGAAA+AGG - tig0023062:49737-49756 Msa1404410:three_prime_UTR 25.0%
!! TGTTATCGCTTCTTTTATTA+TGG - tig0023062:49859-49878 Msa1404410:three_prime_UTR 25.0%
! TTATGTGTTTGTGTTATGTT+TGG - tig0023062:49973-49992 Msa1404410:three_prime_UTR 25.0%
!!! AATCATGAAGTGGTTTTAAA+TGG - tig0023062:50003-50022 Msa1404410:three_prime_UTR 25.0%
!!! ATCATGAAGTGGTTTTAAAT+GGG - tig0023062:50004-50023 Msa1404410:three_prime_UTR 25.0%
!!! AAAGTTAAGTCTATTTTGAC+TGG - tig0023062:50229-50248 Msa1404410:three_prime_UTR 25.0%
!!! AAGTTAAGTCTATTTTGACT+GGG - tig0023062:50230-50249 Msa1404410:three_prime_UTR 25.0%
! AAAATAGTACAGGTTTCAAT+TGG + tig0023062:50257-50276 None:intergenic 25.0%
!! AGAATTTGAAGTATTTGTTG+GGG - tig0023062:50642-50661 Msa1404410:three_prime_UTR 25.0%
! AAATGTTGAGGATATAACTT+TGG - tig0023062:51175-51194 Msa1404410:CDS 25.0%
! GTAGAAGATTCTAATGATAA+AGG - tig0023062:51197-51216 Msa1404410:intron 25.0%
!! TTTTCTGAATAGAAATTCCT+TGG - tig0023062:51387-51406 Msa1404410:intron 25.0%
! TTTCTGAATAGAAATTCCTT+GGG - tig0023062:51388-51407 Msa1404410:intron 25.0%
! TGTAAAAACTGGAAAATTGT+GGG + tig0023062:51583-51602 None:intergenic 25.0%
! ATGTAAAAACTGGAAAATTG+TGG + tig0023062:51584-51603 None:intergenic 25.0%
! TTTCTCATCCTAAAATATAC+CGG + tig0023062:51732-51751 None:intergenic 25.0%
! TGAATTACAGGACAAAAAAT+AGG + tig0023062:53111-53130 None:intergenic 25.0%
!!! TACATTTTGATTTGTAGAGT+CGG - tig0023062:53135-53154 Msa1404410:intron 25.0%
!! TTTATTATGTTTTTCCGATC+AGG - tig0023062:53321-53340 Msa1404410:CDS 25.0%
! TCATATTCATCAATGTATTC+TGG - tig0023062:53517-53536 Msa1404410:intron 25.0%
!! TATAAGTGGATGTATTTTTC+TGG - tig0023062:53662-53681 Msa1404410:intron 25.0%
! ATGTTATGAAGCTTACAATT+TGG - tig0023062:53832-53851 Msa1404410:CDS 25.0%
! GTTATTGAATTTGTGATGTA+TGG - tig0023062:53965-53984 Msa1404410:CDS 25.0%
! ACAAATGGTATCATAAATCA+AGG + tig0023062:54046-54065 None:intergenic 25.0%
! TTGATTTATGATACCATTTG+TGG - tig0023062:54045-54064 Msa1404410:CDS 25.0%
! TGATTTATGATACCATTTGT+GGG - tig0023062:54046-54065 Msa1404410:CDS 25.0%
! AAAGAGATGTTTAGTTACTT+TGG - tig0023062:54215-54234 Msa1404410:CDS 25.0%
! AGTAATAAGAATACTACTTC+AGG - tig0023062:54304-54323 Msa1404410:intron 25.0%
!!! ATCATGCTTTTTACTTTCTT+AGG + tig0023062:54400-54419 None:intergenic 25.0%
! AATAATTACTATGCGAAATC+GGG + tig0023062:54542-54561 None:intergenic 25.0%
! TGAAAATAAAGTAGCAGAAA+AGG - tig0023062:54664-54683 Msa1404410:intron 25.0%
! ATTGACAAAGAAATCACAAA+TGG - tig0023062:54781-54800 Msa1404410:intron 25.0%
! TGAATACACTATTTATGGTA+GGG + tig0023062:54940-54959 None:intergenic 25.0%
! ATGAATACACTATTTATGGT+AGG + tig0023062:54941-54960 None:intergenic 25.0%
! TCATATAGTATACATCTTGA+AGG - tig0023062:54957-54976 Msa1404410:intron 25.0%
!! ATTCATTTTATTGCATCTTG+TGG - tig0023062:55106-55125 Msa1404410:CDS 25.0%
! GTGAACATTTATATCCATAT+AGG + tig0023062:55280-55299 None:intergenic 25.0%
!!! TTCTTTCAATTTGCTATCAT+TGG - tig0023062:55369-55388 Msa1404410:five_prime_UTR 25.0%
!! ATAGCTTTATCTTCAACAAC+AGG + tig0023062:49409-49428 None:intergenic 30.0%
TTAAATTATGGCGAAAAGTG+AGG - tig0023062:49531-49550 Msa1404410:three_prime_UTR 30.0%
TGAAATTATAGCGAAAAGTG+AGG - tig0023062:49572-49591 Msa1404410:three_prime_UTR 30.0%
GGGGTTGTTTAAATTGTTTA+TGG - tig0023062:49631-49650 Msa1404410:three_prime_UTR 30.0%
TATGGTTGTTGCAATTGAAT+AGG - tig0023062:49877-49896 Msa1404410:three_prime_UTR 30.0%
! ATGTTGTCAAATATTGGTTG+TGG - tig0023062:50041-50060 Msa1404410:three_prime_UTR 30.0%
! CATAGCAAAAGAAGGATTTT+AGG - tig0023062:50116-50135 Msa1404410:three_prime_UTR 30.0%
ATCCACAACAATGTTATCAA+TGG + tig0023062:50149-50168 None:intergenic 30.0%
CATTGTGCAATGATTGAATA+TGG - tig0023062:50170-50189 Msa1404410:three_prime_UTR 30.0%
CTTCTGTCAAAAAATAGTAC+AGG + tig0023062:50267-50286 None:intergenic 30.0%
!!! TTTTTTGACAGAAGATGAAG+AGG - tig0023062:50273-50292 Msa1404410:three_prime_UTR 30.0%
! GAATTTGAAGTATTTGTTGG+GGG - tig0023062:50643-50662 Msa1404410:three_prime_UTR 30.0%
TGACTTCTCAATAATAGAGT+AGG - tig0023062:50852-50871 Msa1404410:intron 30.0%
CAGATTAATGGAAAACAATG+TGG - tig0023062:50929-50948 Msa1404410:intron 30.0%
GCTGAATTTATGACTGTTAA+TGG - tig0023062:51105-51124 Msa1404410:intron 30.0%
TTATGGAGTTACAAATGTTG+AGG - tig0023062:51163-51182 Msa1404410:CDS 30.0%
!!! AATTCCTTGGGTTTTTTTGA+AGG - tig0023062:51400-51419 Msa1404410:intron 30.0%
AAAACCTTCAAAAAAACCCA+AGG + tig0023062:51407-51426 None:intergenic 30.0%
! AGTTTGAAATTGTAATCACG+TGG - tig0023062:51547-51566 Msa1404410:CDS 30.0%
! GTTTGAAATTGTAATCACGT+GGG - tig0023062:51548-51567 Msa1404410:CDS 30.0%
CATATTTCTTCAGAAGATTC+CGG + tig0023062:51884-51903 None:intergenic 30.0%
TAATGCTTTCATCTTCTTTC+AGG - tig0023062:52101-52120 Msa1404410:intron 30.0%
ATAGAGAATCATAATCACGA+GGG + tig0023062:52779-52798 None:intergenic 30.0%
TGCAGAAATAATACTAACCA+CGG + tig0023062:52826-52845 None:intergenic 30.0%
CAGGACAAAAAATAGGATTA+GGG + tig0023062:53104-53123 None:intergenic 30.0%
ACAGGACAAAAAATAGGATT+AGG + tig0023062:53105-53124 None:intergenic 30.0%
ATGTATTCATCAAGTTATGG+CGG - tig0023062:53372-53391 Msa1404410:CDS 30.0%
ATTCATCAATGTATTCTGGT+AGG - tig0023062:53521-53540 Msa1404410:intron 30.0%
TTCATCAATGTATTCTGGTA+GGG - tig0023062:53522-53541 Msa1404410:intron 30.0%
TGTGCTTTGTGTATTACATT+AGG - tig0023062:53629-53648 Msa1404410:intron 30.0%
!! AGATTTTGCTATACTCGAAA+TGG - tig0023062:53685-53704 Msa1404410:intron 30.0%
ACAGATCCGACATAATAAAT+TGG - tig0023062:53776-53795 Msa1404410:CDS 30.0%
TTGCAGCCAATTTATTATGT+CGG + tig0023062:53785-53804 None:intergenic 30.0%
CATAATAAATTGGCTGCAAT+AGG - tig0023062:53786-53805 Msa1404410:CDS 30.0%
ATAACATCCATAAGCTTCAA+AGG + tig0023062:53819-53838 None:intergenic 30.0%
CTTGTTTGGTTAAGGATTAA+TGG - tig0023062:54141-54160 Msa1404410:CDS 30.0%
!!! TGATTTTTTTTGGGATGTGT+TGG - tig0023062:54346-54365 Msa1404410:intron 30.0%
TTTCATATTCACTTGAGTGA+TGG + tig0023062:54649-54668 None:intergenic 30.0%
TTTCTAAATCAAGCTAGGTA+GGG + tig0023062:54728-54747 None:intergenic 30.0%
! TTTTCTAAATCAAGCTAGGT+AGG + tig0023062:54729-54748 None:intergenic 30.0%
TAGCTTGATTTAGAAAAGCT+CGG - tig0023062:54732-54751 Msa1404410:intron 30.0%
GCAAATGAACCAACATAAAT+CGG - tig0023062:54756-54775 Msa1404410:intron 30.0%
TATAGTATACATCTTGAAGG+AGG - tig0023062:54960-54979 Msa1404410:intron 30.0%
TTAAGAAGATATTGCTCGTT+AGG - tig0023062:54992-55011 Msa1404410:intron 30.0%
TGTTAGCTAACATACCTATA+TGG - tig0023062:55263-55282 Msa1404410:CDS 30.0%
CGTTCATATATGCATATGAA+TGG - tig0023062:55324-55343 Msa1404410:CDS 30.0%
TGCGATCCACAAAGAAATTT+AGG - tig0023062:49157-49176 Msa1404410:three_prime_UTR 35.0%
GCGATCCACAAAGAAATTTA+GGG - tig0023062:49158-49177 Msa1404410:three_prime_UTR 35.0%
CGAAACCCTAAATTTCTTTG+TGG + tig0023062:49166-49185 None:intergenic 35.0%
TATGAATCAAATTGCTCCTG+AGG - tig0023062:49432-49451 Msa1404410:three_prime_UTR 35.0%
AGCGATAACAGCTTACAAAA+AGG + tig0023062:49849-49868 None:intergenic 35.0%
TGGTGATATCAATCATGAAG+TGG - tig0023062:49993-50012 Msa1404410:three_prime_UTR 35.0%
!!! GGTTTTAAATGGGAATCATG+TGG - tig0023062:50014-50033 Msa1404410:three_prime_UTR 35.0%
GGATCGATGTTGTCAAATAT+TGG - tig0023062:50035-50054 Msa1404410:three_prime_UTR 35.0%
! ATATTGGTTGTGGCAGATTT+CGG - tig0023062:50051-50070 Msa1404410:three_prime_UTR 35.0%
CACAACAATGTTATCAATGG+CGG + tig0023062:50146-50165 None:intergenic 35.0%
TGATGAGAAGGAAATTGAAC+AGG - tig0023062:50396-50415 Msa1404410:three_prime_UTR 35.0%
AAGGAAATTGAACAGGAAGA+GGG - tig0023062:50403-50422 Msa1404410:three_prime_UTR 35.0%
GAAGAACCTGAAGAAAATGT+TGG - tig0023062:50451-50470 Msa1404410:three_prime_UTR 35.0%
! TCTTCACCAACATTTTCTTC+AGG + tig0023062:50460-50479 None:intergenic 35.0%
! GAAGAAAATGTTGGTGAAGA+AGG - tig0023062:50460-50479 Msa1404410:three_prime_UTR 35.0%
AGATGGTCATGATGAAATTG+AGG - tig0023062:50507-50526 Msa1404410:three_prime_UTR 35.0%
GATGGTCATGATGAAATTGA+GGG - tig0023062:50508-50527 Msa1404410:three_prime_UTR 35.0%
TCCTCAGACAAAAAAGAACA+AGG - tig0023062:50750-50769 Msa1404410:CDS 35.0%
CCTCAGACAAAAAAGAACAA+GGG - tig0023062:50751-50770 Msa1404410:CDS 35.0%
ATTCTTGCGGTTTGAAAATG+TGG - tig0023062:50780-50799 Msa1404410:intron 35.0%
AGAAGTCAAAGATTACCACT+GGG + tig0023062:50840-50859 None:intergenic 35.0%
TCGCTGCAATTTCAGATTAA+TGG - tig0023062:50917-50936 Msa1404410:intron 35.0%
GCATATGTTTCCCAAATAGA+GGG + tig0023062:50981-51000 None:intergenic 35.0%
TGCATATGTTTCCCAAATAG+AGG + tig0023062:50982-51001 None:intergenic 35.0%
TGGGAAACATATGCAAAACA+TGG - tig0023062:50987-51006 Msa1404410:CDS 35.0%
CATATGCAAAACATGGACAA+AGG - tig0023062:50994-51013 Msa1404410:CDS 35.0%
! AGCTGTAAGTCTAGTTGTTT+TGG - tig0023062:51018-51037 Msa1404410:CDS 35.0%
! TCAATGAAGGTGCAAAAAAC+AGG + tig0023062:51045-51064 None:intergenic 35.0%
TTGCACCTTCATTGAATTGT+TGG - tig0023062:51050-51069 Msa1404410:intron 35.0%
TGCACCTTCATTGAATTGTT+GGG - tig0023062:51051-51070 Msa1404410:intron 35.0%
ACAACCCAACAATTCAATGA+AGG + tig0023062:51058-51077 None:intergenic 35.0%
TCATAAATTCAGCAGAGTTC+AGG + tig0023062:51098-51117 None:intergenic 35.0%
ATGACTGTTAATGGAACTTC+TGG - tig0023062:51114-51133 Msa1404410:intron 35.0%
! AAGGAGAAGTTGAAGCATTA+TGG - tig0023062:51146-51165 Msa1404410:CDS 35.0%
AATGATAAAGGAACAAACCG+TGG - tig0023062:51209-51228 Msa1404410:intron 35.0%
ATTCCAAGAATGCAAATCCA+CGG + tig0023062:51229-51248 None:intergenic 35.0%
! TGCAGATTCTTTTATTGACC+CGG - tig0023062:51340-51359 Msa1404410:CDS 35.0%
TGTGACATAATTTCATCACC+CGG + tig0023062:51362-51381 None:intergenic 35.0%
CAAAATTAACCAACCACTGA+TGG + tig0023062:51477-51496 None:intergenic 35.0%
!! CAGTGGTTGGTTAATTTTGT+TGG - tig0023062:51478-51497 Msa1404410:intron 35.0%
CACATCACGAATGTAAAAAC+TGG + tig0023062:51594-51613 None:intergenic 35.0%
! CAGTTTTTACATTCGTGATG+TGG - tig0023062:51592-51611 Msa1404410:intron 35.0%
! ATGACACACCGGTATATTTT+AGG - tig0023062:51721-51740 Msa1404410:intron 35.0%
ATGAGAAACTATCCTTCTAG+TGG - tig0023062:51744-51763 Msa1404410:CDS 35.0%
GGAATAAATACATCTACACC+TGG + tig0023062:51776-51795 None:intergenic 35.0%
ACATAATCTTCATCCCATGA+AGG + tig0023062:51861-51880 None:intergenic 35.0%
! CGGAATCTTCTGAAGAAATA+TGG - tig0023062:51882-51901 Msa1404410:CDS 35.0%
TTGAAAAGATTGAGCTTGCA+AGG - tig0023062:51910-51929 Msa1404410:CDS 35.0%
!! GACTATGGATTTGTTACCTT+TGG - tig0023062:51957-51976 Msa1404410:CDS 35.0%
AGCATTACTGGTACAGAATT+GGG - tig0023062:52011-52030 Msa1404410:CDS 35.0%
TAACTGGTATAGACATGACA+GGG + tig0023062:52338-52357 None:intergenic 35.0%
TGTCTATACCAGTTAGAAGT+AGG - tig0023062:52343-52362 Msa1404410:CDS 35.0%
CTTCTATCATAAGATCTAGC+TGG + tig0023062:52381-52400 None:intergenic 35.0%
GTGGATAATCCCTATAAGTT+GGG + tig0023062:52611-52630 None:intergenic 35.0%
GATAGAGAATCATAATCACG+AGG + tig0023062:52780-52799 None:intergenic 35.0%
CGTGATTATGATTCTCTATC+TGG - tig0023062:52780-52799 Msa1404410:intron 35.0%
AATGAGATCGTAAACAATGC+AGG + tig0023062:52867-52886 None:intergenic 35.0%
!!! TTTGTTTTTTATGCCCAACC+AGG - tig0023062:52929-52948 Msa1404410:intron 35.0%
CTTGACCAGAAATAGAACTT+CGG + tig0023062:53191-53210 None:intergenic 35.0%
!! ATTTCTGGTCAAGATTCACA+TGG - tig0023062:53198-53217 Msa1404410:CDS 35.0%
! TTTCTGGTCAAGATTCACAT+GGG - tig0023062:53199-53218 Msa1404410:CDS 35.0%
GGCATGTATTCATCAAGTTA+TGG - tig0023062:53369-53388 Msa1404410:CDS 35.0%
ATCTATTGTTCCTGTGATGT+AGG - tig0023062:53483-53502 Msa1404410:intron 35.0%
TCATCAATGTATTCTGGTAG+GGG - tig0023062:53523-53542 Msa1404410:intron 35.0%
TAGGATGCATTCAGTATAAG+TGG - tig0023062:53648-53667 Msa1404410:intron 35.0%
! CATCTCTTATCTTTTCGCAA+GGG - tig0023062:53708-53727 Msa1404410:intron 35.0%
CTGTTCATAGACAAATTCAC+TGG + tig0023062:53760-53779 None:intergenic 35.0%
CATGTCAATTCAAGCTATCT+CGG - tig0023062:53915-53934 Msa1404410:CDS 35.0%
ATGTCAATTCAAGCTATCTC+GGG - tig0023062:53916-53935 Msa1404410:CDS 35.0%
TTTATGATACCATTTGTGGG+TGG - tig0023062:54049-54068 Msa1404410:CDS 35.0%
TAACATTATCCACCCACAAA+TGG + tig0023062:54061-54080 None:intergenic 35.0%
TGCTCCAATACCATTTCATT+TGG - tig0023062:54093-54112 Msa1404410:CDS 35.0%
CTGTCCAAATGAAATGGTAT+TGG + tig0023062:54100-54119 None:intergenic 35.0%
! AGATGCTACTTGTTTGGTTA+AGG - tig0023062:54133-54152 Msa1404410:CDS 35.0%
TCTGCTGAATGTATCAAAGT+TGG - tig0023062:54172-54191 Msa1404410:CDS 35.0%
! GAACTGATAATATTTGCTGC+TGG - tig0023062:54420-54439 Msa1404410:intron 35.0%
!! TACTTTGAGTTTTTGTCCTG+AGG - tig0023062:54453-54472 Msa1404410:intron 35.0%
AAACTATGCAGGTTACTAGA+TGG + tig0023062:54519-54538 None:intergenic 35.0%
! TTTAGCTTCTGCATTGTAGT+GGG - tig0023062:54618-54637 Msa1404410:intron 35.0%
! GAGCTTTTCTAAATCAAGCT+AGG + tig0023062:54733-54752 None:intergenic 35.0%
AGCTTGATTTAGAAAAGCTC+GGG - tig0023062:54733-54752 Msa1404410:intron 35.0%
! TGTCAATGACCGATTTATGT+TGG + tig0023062:54768-54787 None:intergenic 35.0%
CTCAACATTGCTCAGAAATA+GGG + tig0023062:55049-55068 None:intergenic 35.0%
ACTCAACATTGCTCAGAAAT+AGG + tig0023062:55050-55069 None:intergenic 35.0%
ATTAATATATTCACTGGGCG+TGG - tig0023062:55151-55170 Msa1404410:CDS 35.0%
TTAATATATTCACTGGGCGT+GGG - tig0023062:55152-55171 Msa1404410:CDS 35.0%
!! ACTCTAGTTTAGCTCTTGTT+AGG - tig0023062:55298-55317 Msa1404410:CDS 35.0%
TGAACCTGTTGAAGAGAAGA+CGG - tig0023062:49312-49331 Msa1404410:three_prime_UTR 40.0%
GGTGATTGAAGAAGAGATCA+AGG - tig0023062:49333-49352 Msa1404410:three_prime_UTR 40.0%
AGAAGAGAATCTCGTTGTTG+AGG - tig0023062:49357-49376 Msa1404410:three_prime_UTR 40.0%
! CGCCATTGATAACATTGTTG+TGG - tig0023062:50144-50163 Msa1404410:three_prime_UTR 40.0%
TTTGACAGAAGATGAAGAGG+AGG - tig0023062:50276-50295 Msa1404410:three_prime_UTR 40.0%
AGAAGATGAAGAGGAGGTTA+AGG - tig0023062:50282-50301 Msa1404410:three_prime_UTR 40.0%
GAAGGAAATTGAACAGGAAG+AGG - tig0023062:50402-50421 Msa1404410:three_prime_UTR 40.0%
TGATGAAATTGAGGGAGAAG+AGG - tig0023062:50516-50535 Msa1404410:three_prime_UTR 40.0%
ATGCTACTGAAGATGATCTG+AGG - tig0023062:50677-50696 Msa1404410:three_prime_UTR 40.0%
TACTGAAGATGATCTGAGGA+AGG - tig0023062:50681-50700 Msa1404410:three_prime_UTR 40.0%
! GATGATCTGAGGAAGGTTTT+CGG - tig0023062:50688-50707 Msa1404410:three_prime_UTR 40.0%
!!! CCCTTGTTCTTTTTTGTCTG+AGG + tig0023062:50754-50773 None:intergenic 40.0%
ACAAGGGATTTGCATTCTTG+CGG - tig0023062:50767-50786 Msa1404410:intron 40.0%
GAGAAGTCAAAGATTACCAC+TGG + tig0023062:50841-50860 None:intergenic 40.0%
GACAGTGATACCCTCTATTT+GGG - tig0023062:50968-50987 Msa1404410:CDS 40.0%
GCTTCAACTTCTCCTTTAAC+TGG + tig0023062:51142-51161 None:intergenic 40.0%
AAACCGTGGATTTGCATTCT+TGG - tig0023062:51223-51242 Msa1404410:intron 40.0%
! CTTTAAGAGACTGCAGAAGA+GGG - tig0023062:51277-51296 Msa1404410:intron 40.0%
TCTGCAAATGAAACCTTTGC+AGG + tig0023062:51326-51345 None:intergenic 40.0%
! GCAGATTCTTTTATTGACCC+GGG - tig0023062:51341-51360 Msa1404410:CDS 40.0%
GTGACATAATTTCATCACCC+GGG + tig0023062:51361-51380 None:intergenic 40.0%
GGGTGATGAAATTATGTCAC+AGG - tig0023062:51361-51380 Msa1404410:CDS 40.0%
TAAGCGGAACATGTGTAGAA+TGG - tig0023062:51428-51447 Msa1404410:intron 40.0%
ATGAGTTCCAATACCATCAG+TGG - tig0023062:51461-51480 Msa1404410:intron 40.0%
TAACCAACCACTGATGGTAT+TGG + tig0023062:51471-51490 None:intergenic 40.0%
GAAACTATCCTTCTAGTGGT+TGG - tig0023062:51748-51767 Msa1404410:CDS 40.0%
TAATCTTCATCCCATGAAGG+AGG + tig0023062:51858-51877 None:intergenic 40.0%
CATGGGATGAAGATTATGTC+CGG - tig0023062:51862-51881 Msa1404410:CDS 40.0%
! TCTTCTGAAGAAATATGGCG+AGG - tig0023062:51887-51906 Msa1404410:CDS 40.0%
CAGCATTACTGGTACAGAAT+TGG - tig0023062:52010-52029 Msa1404410:CDS 40.0%
ATTGGGTGAAGGTGACAAAA+AGG - tig0023062:52028-52047 Msa1404410:CDS 40.0%
AATATCTGCGCAGTGAAACA+TGG - tig0023062:52071-52090 Msa1404410:intron 40.0%
CAATAATGTCAAGGCCTTCT+TGG - tig0023062:52214-52233 Msa1404410:CDS 40.0%
CTAACTGGTATAGACATGAC+AGG + tig0023062:52339-52358 None:intergenic 40.0%
CTATCATAAGATCTAGCTGG+AGG + tig0023062:52378-52397 None:intergenic 40.0%
TCTTATGATAGAAGACCAGC+TGG - tig0023062:52387-52406 Msa1404410:CDS 40.0%
ATTGTACACTACATACCAGC+TGG + tig0023062:52405-52424 None:intergenic 40.0%
GCAGCATCTAGAAGACAATA+TGG + tig0023062:52480-52499 None:intergenic 40.0%
AGCAGTGTGAAGAGAGATTA+TGG - tig0023062:52510-52529 Msa1404410:CDS 40.0%
GTGTGAAGAGAGATTATGGT+CGG - tig0023062:52514-52533 Msa1404410:CDS 40.0%
AGTAGAGTTGCTGCAGATTA+TGG - tig0023062:52561-52580 Msa1404410:CDS 40.0%
TTGCTGCAGATTATGGATCA+AGG - tig0023062:52568-52587 Msa1404410:CDS 40.0%
TGAAAGACGCCCAACTTATA+GGG - tig0023062:52599-52618 Msa1404410:CDS 40.0%
GGTGGATAATCCCTATAAGT+TGG + tig0023062:52612-52631 None:intergenic 40.0%
TCCTTCACGATAACTTGGAT+GGG + tig0023062:52754-52773 None:intergenic 40.0%
!! GGAAGATCTAGTCTTGGATA+TGG - tig0023062:53156-53175 Msa1404410:intron 40.0%
!! TCTAGTCTTGGATATGGTAG+TGG - tig0023062:53162-53181 Msa1404410:intron 40.0%
TTCTGGTCAAGATTCACATG+GGG - tig0023062:53200-53219 Msa1404410:CDS 40.0%
! TTTTTCCGATCAGGCTCTTA+TGG - tig0023062:53330-53349 Msa1404410:CDS 40.0%
TCTTATGGCGGTAATGATGT+TGG - tig0023062:53345-53364 Msa1404410:CDS 40.0%
ATTGTTCCTGTGATGTAGGT+TGG - tig0023062:53487-53506 Msa1404410:intron 40.0%
GGTTCGGGATCTTATTATTG+AGG - tig0023062:53580-53599 Msa1404410:CDS 40.0%
! GCATCTCTTATCTTTTCGCA+AGG - tig0023062:53707-53726 Msa1404410:intron 40.0%
! TCTTATCTTTTCGCAAGGGA+TGG - tig0023062:53712-53731 Msa1404410:CDS 40.0%
AATTGGCTGCAATAGGATGA+CGG - tig0023062:53793-53812 Msa1404410:CDS 40.0%
GGGAACTTGTCGCAAAAATT+AGG - tig0023062:53891-53910 Msa1404410:CDS 40.0%
TGGTCTCTGTCCAAATGAAA+TGG + tig0023062:54106-54125 None:intergenic 40.0%
TTTCATTTGGACAGAGACCA+AGG - tig0023062:54106-54125 Msa1404410:CDS 40.0%
GTGTTGTAGGATTTGTGACA+TGG - tig0023062:54368-54387 Msa1404410:intron 40.0%
!! TTTGAGTTTTTGTCCTGAGG+TGG - tig0023062:54456-54475 Msa1404410:intron 40.0%
TGCAGAAGCTAAAGATTCTG+TGG + tig0023062:54611-54630 None:intergenic 40.0%
! CTTTAGCTTCTGCATTGTAG+TGG - tig0023062:54617-54636 Msa1404410:intron 40.0%
TAAATCAAGCTAGGTAGGGT+GGG + tig0023062:54724-54743 None:intergenic 40.0%
GCTTGATTTAGAAAAGCTCG+GGG - tig0023062:54734-54753 Msa1404410:intron 40.0%
CTCAAGACAACCAACAATGT+GGG + tig0023062:54859-54878 None:intergenic 40.0%
ACTCAAGACAACCAACAATG+TGG + tig0023062:54860-54879 None:intergenic 40.0%
AGACAACCAACGATATGGTT+CGG + tig0023062:54904-54923 None:intergenic 40.0%
ACTCAAGACAACCAACGATA+TGG + tig0023062:54909-54928 None:intergenic 40.0%
AGTATACATCTTGAAGGAGG+AGG - tig0023062:54963-54982 Msa1404410:intron 40.0%
!! GTCTTCGGAGGCATTGTTAT+TGG + tig0023062:49196-49215 None:intergenic 45.0%
ATCACCGTCTTCTCTTCAAC+AGG + tig0023062:49319-49338 None:intergenic 45.0%
CGTTGTTGAGGAAAAACCTG+TGG - tig0023062:49369-49388 Msa1404410:three_prime_UTR 45.0%
TGTTGAGGAAAAACCTGTGG+TGG - tig0023062:49372-49391 Msa1404410:three_prime_UTR 45.0%
GGATTATCTTCTTCCACCAC+AGG + tig0023062:49388-49407 None:intergenic 45.0%
TTAGCATCTTCTACAGCCTC+AGG + tig0023062:49451-49470 None:intergenic 45.0%
AGTTTCTTTGACAACCGCCA+TGG - tig0023062:50078-50097 Msa1404410:three_prime_UTR 45.0%
!!! CAACCGCCATGGTGTTTTTT+TGG - tig0023062:50089-50108 Msa1404410:three_prime_UTR 45.0%
TGTCCGCCAAAAAAACACCA+TGG + tig0023062:50098-50117 None:intergenic 45.0%
! TTGGCGGACATAGCAAAAGA+AGG - tig0023062:50108-50127 Msa1404410:three_prime_UTR 45.0%
TGATCCTGAGTATGAACCTG+AGG - tig0023062:50354-50373 Msa1404410:three_prime_UTR 45.0%
TACTCCTCAGGTTCATACTC+AGG + tig0023062:50361-50380 None:intergenic 45.0%
GAGTATGAACCTGAGGAGTA+TGG - tig0023062:50361-50380 Msa1404410:three_prime_UTR 45.0%
! TATGAACCTGAGGAGTATGG+TGG - tig0023062:50364-50383 Msa1404410:three_prime_UTR 45.0%
! ATGAACCTGAGGAGTATGGT+GGG - tig0023062:50365-50384 Msa1404410:three_prime_UTR 45.0%
TGGGGTTGACTATGATGAGA+AGG - tig0023062:50384-50403 Msa1404410:three_prime_UTR 45.0%
! GTTGGTGAAGAAGGTGATTC+AGG - tig0023062:50469-50488 Msa1404410:three_prime_UTR 45.0%
GGAACATCGTGAAGTTGTGA+AGG - tig0023062:50603-50622 Msa1404410:three_prime_UTR 45.0%
ATCGTGAAGTTGTGAAGGAG+AGG - tig0023062:50608-50627 Msa1404410:three_prime_UTR 45.0%
CTTCAGTAGCATCCTTGTCT+AGG + tig0023062:50669-50688 None:intergenic 45.0%
! AGGAAGGTTTTCGGTGAAGT+TGG - tig0023062:50697-50716 Msa1404410:three_prime_UTR 45.0%
! GGAAGGTTTTCGGTGAAGTT+GGG - tig0023062:50698-50717 Msa1404410:three_prime_UTR 45.0%
! GAAGGTTTTCGGTGAAGTTG+GGG - tig0023062:50699-50718 Msa1404410:three_prime_UTR 45.0%
AGCAGAGCTTAAAAACCCAG+TGG - tig0023062:50822-50841 Msa1404410:intron 45.0%
GGACAGTGATACCCTCTATT+TGG - tig0023062:50967-50986 Msa1404410:CDS 45.0%
! GAACTTCTGGTGCCAGTTAA+AGG - tig0023062:51127-51146 Msa1404410:CDS 45.0%
CCTCTTCTGCAGTCTCTTAA+AGG + tig0023062:51279-51298 None:intergenic 45.0%
! CCTTTAAGAGACTGCAGAAG+AGG - tig0023062:51276-51295 Msa1404410:intron 45.0%
CAGAAGAGGGATGTTACGTT+TGG - tig0023062:51290-51309 Msa1404410:intron 45.0%
!! TGGAGTTGATAAGCCTGCAA+AGG - tig0023062:51310-51329 Msa1404410:CDS 45.0%
GTTCCAATACCATCAGTGGT+TGG - tig0023062:51465-51484 Msa1404410:intron 45.0%
TTGATGCACTTCCTCCTTCA+TGG - tig0023062:51844-51863 Msa1404410:CDS 45.0%
TGATGCACTTCCTCCTTCAT+GGG - tig0023062:51845-51864 Msa1404410:CDS 45.0%
! AGATGTGCTGACAGCATTAC+TGG - tig0023062:51999-52018 Msa1404410:CDS 45.0%
ACTGGTACAGAATTGGGTGA+AGG - tig0023062:52017-52036 Msa1404410:CDS 45.0%
TCTTCTTTCAGGCCAAAGTG+AGG - tig0023062:52112-52131 Msa1404410:intron 45.0%
CTTCTTTCAGGCCAAAGTGA+GGG - tig0023062:52113-52132 Msa1404410:intron 45.0%
TGATAACCTAGCCCTCACTT+TGG + tig0023062:52127-52146 None:intergenic 45.0%
AAGTGAGGGCTAGGTTATCA+AGG - tig0023062:52127-52146 Msa1404410:intron 45.0%
TTATCAAGGCCACTTCAGAG+AGG - tig0023062:52141-52160 Msa1404410:intron 45.0%
! CACGACCAACATGTTTTCCA+CGG + tig0023062:52167-52186 None:intergenic 45.0%
GTGGAAAACATGTTGGTCGT+GGG - tig0023062:52166-52185 Msa1404410:CDS 45.0%
TGGAAAACATGTTGGTCGTG+GGG - tig0023062:52167-52186 Msa1404410:CDS 45.0%
ATTATTGCAGATCCGCGACT+CGG + tig0023062:52201-52220 None:intergenic 45.0%
GCGGATCTGCAATAATGTCA+AGG - tig0023062:52205-52224 Msa1404410:CDS 45.0%
!! CTAGCACTGATAGACCTGAT+TGG + tig0023062:52306-52325 None:intergenic 45.0%
TCATAAGATCTAGCTGGAGG+AGG + tig0023062:52375-52394 None:intergenic 45.0%
TCTGCAGCAACTCTACTTCT+TGG + tig0023062:52558-52577 None:intergenic 45.0%
! ATAAGTTGGGCGTCTTTCAG+AGG + tig0023062:52598-52617 None:intergenic 45.0%
CTGAAAGACGCCCAACTTAT+AGG - tig0023062:52598-52617 Msa1404410:CDS 45.0%
TATAGGGATTATCCACCTCG+TGG - tig0023062:52615-52634 Msa1404410:CDS 45.0%
! TGGATGATGGTTACAGCCAA+AGG - tig0023062:52697-52716 Msa1404410:CDS 45.0%
! GTTACAGCCAAAGGTATGAG+AGG - tig0023062:52706-52725 Msa1404410:CDS 45.0%
ACGATAACTTGGATGGGAAG+GGG + tig0023062:52748-52767 None:intergenic 45.0%
CACGATAACTTGGATGGGAA+GGG + tig0023062:52749-52768 None:intergenic 45.0%
TCACGATAACTTGGATGGGA+AGG + tig0023062:52750-52769 None:intergenic 45.0%
TCCCATCCAAGTTATCGTGA+AGG - tig0023062:52750-52769 Msa1404410:intron 45.0%
GTCCTTCACGATAACTTGGA+TGG + tig0023062:52755-52774 None:intergenic 45.0%
ACTCCAATCGAGCTCTTGAT+TGG + tig0023062:52992-53011 None:intergenic 45.0%
GCTCGATTGGAGTATGACTA+TGG - tig0023062:52999-53018 Msa1404410:intron 45.0%
CGATTGGAGTATGACTATGG+TGG - tig0023062:53002-53021 Msa1404410:intron 45.0%
TCACAGTACGGTGATGCTTA+TGG - tig0023062:53032-53051 Msa1404410:intron 45.0%
ACGGTGATGCTTATGGTGAT+AGG - tig0023062:53039-53058 Msa1404410:intron 45.0%
AGAGTCGGAAGATCTAGTCT+TGG - tig0023062:53150-53169 Msa1404410:intron 45.0%
TATGGCGGTAATGATGTTGG+AGG - tig0023062:53348-53367 Msa1404410:CDS 45.0%
! GAGATTGGTTGAGAAAGGAC+AGG + tig0023062:53431-53450 None:intergenic 45.0%
TCCTTTCTCAACCAATCTCG+AGG - tig0023062:53432-53451 Msa1404410:intron 45.0%
! TCCTCGAGATTGGTTGAGAA+AGG + tig0023062:53436-53455 None:intergenic 45.0%
AATGTATTCTGGTAGGGGCA+CGG - tig0023062:53528-53547 Msa1404410:intron 45.0%
!! ATGACGGCCTTTGAAGCTTA+TGG - tig0023062:53809-53828 Msa1404410:CDS 45.0%
ACAAGTAGCATCTCTAGCCT+TGG + tig0023062:54126-54145 None:intergenic 45.0%
! GGCTAGAGATGCTACTTGTT+TGG - tig0023062:54127-54146 Msa1404410:CDS 45.0%
! GTTTTTACAGTGCTGCAGTC+AGG - tig0023062:54245-54264 Msa1404410:CDS 45.0%
!! TTGGGATGTGTTGGTGTTGT+AGG - tig0023062:54355-54374 Msa1404410:intron 45.0%
ATTATCTTGCAGTCCACCTC+AGG + tig0023062:54472-54491 None:intergenic 45.0%
TGAATGTACTTCATGCACCC+TGG - tig0023062:54689-54708 Msa1404410:intron 45.0%
AAATCAAGCTAGGTAGGGTG+GGG + tig0023062:54723-54742 None:intergenic 45.0%
CTAAATCAAGCTAGGTAGGG+TGG + tig0023062:54725-54744 None:intergenic 45.0%
AGACAACCAACAATGTGGGT+CGG + tig0023062:54855-54874 None:intergenic 45.0%
! TATGGTTCGGGAGTTGGAAA+GGG + tig0023062:54891-54910 None:intergenic 45.0%
! ATATGGTTCGGGAGTTGGAA+AGG + tig0023062:54892-54911 None:intergenic 45.0%
GACAACCAACGATATGGTTC+GGG + tig0023062:54903-54922 None:intergenic 45.0%
! TGGGTTATTACGGACTGACT+TGG - tig0023062:55171-55190 Msa1404410:CDS 45.0%
GCAAAGCAAACAGAACAGTG+TGG + tig0023062:55210-55229 None:intergenic 45.0%
! TGTTTGCTTTGCTGTACTGC+AGG - tig0023062:55218-55237 Msa1404410:CDS 45.0%
! GTTTGCTTTGCTGTACTGCA+GGG - tig0023062:55219-55238 Msa1404410:CDS 45.0%
!!! TTATTGATTTTTTTTATATT+TGG - tig0023062:49610-49629 Msa1404410:three_prime_UTR 5.0%
!!! TATTGATTTTTTTTATATTT+GGG - tig0023062:49611-49630 Msa1404410:three_prime_UTR 5.0%
GAACCTCTCTTTGGCGTCTT+CGG + tig0023062:49211-49230 None:intergenic 50.0%
! AGCGGGTAGTGGTTCAAAGA+GGG - tig0023062:49231-49250 Msa1404410:three_prime_UTR 50.0%
TTGGTTGTGGCAGATTTCGG+TGG - tig0023062:50054-50073 Msa1404410:three_prime_UTR 50.0%
CCGCCAAAAAAACACCATGG+CGG + tig0023062:50095-50114 None:intergenic 50.0%
!!! CCGCCATGGTGTTTTTTTGG+CGG - tig0023062:50092-50111 Msa1404410:three_prime_UTR 50.0%
GAGAGACGAGCGTCTAGATT+TGG - tig0023062:50324-50343 Msa1404410:three_prime_UTR 50.0%
AGACGAGCGTCTAGATTTGG+AGG - tig0023062:50327-50346 Msa1404410:three_prime_UTR 50.0%
! TGAACCTGAGGAGTATGGTG+GGG - tig0023062:50366-50385 Msa1404410:three_prime_UTR 50.0%
TGAACAGGAAGAGGGACATG+AGG - tig0023062:50411-50430 Msa1404410:three_prime_UTR 50.0%
TGAGGTGGGAGATGAAGTTG+AGG - tig0023062:50429-50448 Msa1404410:three_prime_UTR 50.0%
TGAAGAAGGTGATTCAGGCG+AGG - tig0023062:50474-50493 Msa1404410:three_prime_UTR 50.0%
GATGGCTGATGTGGATGAAG+AGG - tig0023062:50582-50601 Msa1404410:three_prime_UTR 50.0%
TTGTGAAGGAGAGGCGAAAG+CGG - tig0023062:50617-50636 Msa1404410:three_prime_UTR 50.0%
! ATTTGTTGGGGGCCTAGACA+AGG - tig0023062:50654-50673 Msa1404410:three_prime_UTR 50.0%
TGAAGTTGGGGTTGTGACTG+AGG - tig0023062:50711-50730 Msa1404410:three_prime_UTR 50.0%
!! ATGTGGTGTTACTCCGAGTC+AGG - tig0023062:50946-50965 Msa1404410:intron 50.0%
! AGGGTATCACTGTCCTGACT+CGG + tig0023062:50962-50981 None:intergenic 50.0%
AGGCATCCATTGCATCTGAG+CGG + tig0023062:51259-51278 None:intergenic 50.0%
GGGTGTTCAGAATGACACAC+CGG - tig0023062:51710-51729 Msa1404410:intron 50.0%
! TCCTTCTAGTGGTTGGTTCC+AGG - tig0023062:51755-51774 Msa1404410:CDS 50.0%
ACCTGGAACCAACCACTAGA+AGG + tig0023062:51759-51778 None:intergenic 50.0%
TAGTCCTTTCTACGAGCAGC+TGG + tig0023062:51942-51961 None:intergenic 50.0%
GCTGCTCGTAGAAAGGACTA+TGG - tig0023062:51942-51961 Msa1404410:CDS 50.0%
AGAGGCCGTGGAAAACATGT+TGG - tig0023062:52159-52178 Msa1404410:CDS 50.0%
CGTGGAAAACATGTTGGTCG+TGG - tig0023062:52165-52184 Msa1404410:CDS 50.0%
TTATTGCAGATCCGCGACTC+GGG + tig0023062:52200-52219 None:intergenic 50.0%
! GCACTGATAGACCTGATTGG+CGG + tig0023062:52303-52322 None:intergenic 50.0%
! GGTAGTGGCCTACTTCTAAC+TGG + tig0023062:52354-52373 None:intergenic 50.0%
GCAACTCTACTTCTTGGAGG+TGG + tig0023062:52552-52571 None:intergenic 50.0%
GCAGCAACTCTACTTCTTGG+AGG + tig0023062:52555-52574 None:intergenic 50.0%
TCAGAGTAGTCAGATCCACG+AGG + tig0023062:52633-52652 None:intergenic 50.0%
CAGCACGAGCAGTACTTCTA+GGG + tig0023062:52659-52678 None:intergenic 50.0%
TCATCCACGTAACCTCTCCT+AGG + tig0023062:52684-52703 None:intergenic 50.0%
AGGAGAGGTTACGTGGATGA+TGG - tig0023062:52684-52703 Msa1404410:CDS 50.0%
CGATAACTTGGATGGGAAGG+GGG + tig0023062:52747-52766 None:intergenic 50.0%
ATCTTGGGGGAACATCATCC+TGG + tig0023062:52950-52969 None:intergenic 50.0%
!! ACCAGTATCGGCGTATCTTG+GGG + tig0023062:52964-52983 None:intergenic 50.0%
!! CACCAGTATCGGCGTATCTT+GGG + tig0023062:52965-52984 None:intergenic 50.0%
TGATTGGCGAGCACCAGTAT+CGG + tig0023062:52976-52995 None:intergenic 50.0%
TCGCCAATCAAGAGCTCGAT+TGG - tig0023062:52986-53005 Msa1404410:intron 50.0%
GGCAGCCGAAGTTCTATTTC+TGG - tig0023062:53183-53202 Msa1404410:CDS 50.0%
CACATGGGGTGTATAGCAGT+CGG - tig0023062:53214-53233 Msa1404410:CDS 50.0%
TTCCGATCAGGCTCTTATGG+CGG - tig0023062:53333-53352 Msa1404410:CDS 50.0%
TACCGCCATAAGAGCCTGAT+CGG + tig0023062:53338-53357 None:intergenic 50.0%
CTCAACCAATCTCGAGGAGT+CGG - tig0023062:53438-53457 Msa1404410:intron 50.0%
! GTTCCTGTGATGTAGGTTGG+TGG - tig0023062:53490-53509 Msa1404410:intron 50.0%
! ATGTATTCTGGTAGGGGCAC+GGG - tig0023062:53529-53548 Msa1404410:intron 50.0%
ATGGCGAAGGTTGCACATTG+TGG - tig0023062:53731-53750 Msa1404410:CDS 50.0%
AGCTATCTCGGGTCTTCTCT+AGG - tig0023062:53927-53946 Msa1404410:CDS 50.0%
TATCTCGGGTCTTCTCTAGG+TGG - tig0023062:53930-53949 Msa1404410:CDS 50.0%
ATCTCGGGTCTTCTCTAGGT+GGG - tig0023062:53931-53950 Msa1404410:CDS 50.0%
GGACTCAAGTTAGTGAGCGA+TGG - tig0023062:53986-54005 Msa1404410:CDS 50.0%
GCGAAATCGGGAAACTATGC+AGG + tig0023062:54530-54549 None:intergenic 50.0%
AATCAAGCTAGGTAGGGTGG+GGG + tig0023062:54722-54741 None:intergenic 50.0%
GACAACCAACAATGTGGGTC+GGG + tig0023062:54854-54873 None:intergenic 50.0%
! CAACGATATGGTTCGGGAGT+TGG + tig0023062:54897-54916 None:intergenic 50.0%
CAACTCCCGAACCATATCGT+TGG - tig0023062:54895-54914 Msa1404410:intron 50.0%
! TCACTGGGCGTGGGTTATTA+CGG - tig0023062:55161-55180 Msa1404410:CDS 50.0%
GACGCCAAAGAGAGGTTCAG+CGG - tig0023062:49213-49232 Msa1404410:three_prime_UTR 55.0%
ACGCCAAAGAGAGGTTCAGC+GGG - tig0023062:49214-49233 Msa1404410:three_prime_UTR 55.0%
CTACCCGCTGAACCTCTCTT+TGG + tig0023062:49220-49239 None:intergenic 55.0%
AAGAGAGGTTCAGCGGGTAG+TGG - tig0023062:49220-49239 Msa1404410:three_prime_UTR 55.0%
! CAGCGGGTAGTGGTTCAAAG+AGG - tig0023062:49230-49249 Msa1404410:three_prime_UTR 55.0%
! GCGGGTAGTGGTTCAAAGAG+GGG - tig0023062:49232-49251 Msa1404410:three_prime_UTR 55.0%
! GGTAGTGGTTCAAAGAGGGG+TGG - tig0023062:49235-49254 Msa1404410:three_prime_UTR 55.0%
AGGGGTGGCAGATTATCGAG+AGG - tig0023062:49250-49269 Msa1404410:three_prime_UTR 55.0%
TCAACCCCACCATACTCCTC+AGG + tig0023062:50373-50392 None:intergenic 55.0%
ACAGGAAGAGGGACATGAGG+TGG - tig0023062:50414-50433 Msa1404410:three_prime_UTR 55.0%
CAGGAAGAGGGACATGAGGT+GGG - tig0023062:50415-50434 Msa1404410:three_prime_UTR 55.0%
GGCGAGGAAGAAGTCGAAGA+TGG - tig0023062:50490-50509 Msa1404410:three_prime_UTR 55.0%
GGATGACGAGCATGCTGATG+AGG - tig0023062:50537-50556 Msa1404410:three_prime_UTR 55.0%
TTGGGGTTGTGACTGAGGTC+AGG - tig0023062:50716-50735 Msa1404410:three_prime_UTR 55.0%
TTCCTCCCGCTCAGATGCAA+TGG - tig0023062:51250-51269 Msa1404410:intron 55.0%
ATCCATTGCATCTGAGCGGG+AGG + tig0023062:51255-51274 None:intergenic 55.0%
GGCATCCATTGCATCTGAGC+GGG + tig0023062:51258-51277 None:intergenic 55.0%
CATGCCAGCTGCTCGTAGAA+AGG - tig0023062:51935-51954 Msa1404410:CDS 55.0%
AGCAGCATCGTGTGAGCCAA+AGG + tig0023062:51976-51995 None:intergenic 55.0%
TTCAGGCCAAAGTGAGGGCT+AGG - tig0023062:52118-52137 Msa1404410:intron 55.0%
! TTTCCACGGCCTCTCTGAAG+TGG + tig0023062:52153-52172 None:intergenic 55.0%
AGAAACTACGGGGTGCAGGT+CGG + tig0023062:52245-52264 None:intergenic 55.0%
TCGCGTGGGGTAAGAGGAAT+TGG - tig0023062:52267-52286 Msa1404410:CDS 55.0%
GATCTAGCTGGAGGAGGTAG+TGG + tig0023062:52369-52388 None:intergenic 55.0%
GAGTAGTCAGATCCACGAGG+TGG + tig0023062:52630-52649 None:intergenic 55.0%
GCAGCACGAGCAGTACTTCT+AGG + tig0023062:52660-52679 None:intergenic 55.0%
TGCACCTAGGAGAGGTTACG+TGG - tig0023062:52677-52696 Msa1404410:CDS 55.0%
GAGGTGGCCTCTCATACCTT+TGG + tig0023062:52716-52735 None:intergenic 55.0%
TAACTTGGATGGGAAGGGGG+TGG + tig0023062:52744-52763 None:intergenic 55.0%
GGGCGTCCTTCACGATAACT+TGG + tig0023062:52759-52778 None:intergenic 55.0%
AAAACGTTCGTACGCTGCCG+TGG - tig0023062:52806-52825 Msa1404410:intron 55.0%
GGGGGAACATCATCCTGGTT+GGG + tig0023062:52945-52964 None:intergenic 55.0%
TGGGGGAACATCATCCTGGT+TGG + tig0023062:52946-52965 None:intergenic 55.0%
!! CCAGTATCGGCGTATCTTGG+GGG + tig0023062:52963-52982 None:intergenic 55.0%
!! GCACCAGTATCGGCGTATCT+TGG + tig0023062:52966-52985 None:intergenic 55.0%
GGTGGCAGTGCTTCACAGTA+CGG - tig0023062:53020-53039 Msa1404410:intron 55.0%
AGTCGGCAGGGCATGAGTTA+TGG - tig0023062:53231-53250 Msa1404410:CDS 55.0%
CAGGGCATGAGTTATGGTGG+AGG - tig0023062:53237-53256 Msa1404410:CDS 55.0%
GGCGGTGATTACGTTTCTCG+TGG - tig0023062:53390-53409 Msa1404410:CDS 55.0%
ACAGTCCGACTCCTCGAGAT+TGG + tig0023062:53446-53465 None:intergenic 55.0%
CTGCCACCAACCTACATCAC+AGG + tig0023062:53496-53515 None:intergenic 55.0%
! GGTGGCGGTAGCAGTTACAT+GGG - tig0023062:53550-53569 Msa1404410:CDS 55.0%
GGTAGCAGTTACATGGGCAG+CGG - tig0023062:53556-53575 Msa1404410:CDS 55.0%
TTACATGGGCAGCGGTGGTT+CGG - tig0023062:53564-53583 Msa1404410:CDS 55.0%
! CTTTTCGCAAGGGATGGCGA+AGG - tig0023062:53718-53737 Msa1404410:CDS 55.0%
ATCAAGCTAGGTAGGGTGGG+GGG + tig0023062:54721-54740 None:intergenic 55.0%
CAACAATGTGGGTCGGGAGT+TGG + tig0023062:54848-54867 None:intergenic 55.0%
CAACTCCCGACCCACATTGT+TGG - tig0023062:54846-54865 Msa1404410:intron 55.0%
CCTCTCTTTGGCGTCTTCGG+AGG + tig0023062:49208-49227 None:intergenic 60.0%
CCTCCGAAGACGCCAAAGAG+AGG - tig0023062:49205-49224 Msa1404410:three_prime_UTR 60.0%
GACGAGAAACTACGGGGTGC+AGG + tig0023062:52249-52268 None:intergenic 60.0%
CCACGCGACGAGAAACTACG+GGG + tig0023062:52255-52274 None:intergenic 60.0%
CCCACGCGACGAGAAACTAC+GGG + tig0023062:52256-52275 None:intergenic 60.0%
CCCGTAGTTTCTCGTCGCGT+GGG - tig0023062:52253-52272 Msa1404410:CDS 60.0%
CCCCACGCGACGAGAAACTA+CGG + tig0023062:52257-52276 None:intergenic 60.0%
CCGTAGTTTCTCGTCGCGTG+GGG - tig0023062:52254-52273 Msa1404410:CDS 60.0%
TTCTCGTCGCGTGGGGTAAG+AGG - tig0023062:52261-52280 Msa1404410:CDS 60.0%
GAAGTCGTGCTCCGCCAATC+AGG - tig0023062:52289-52308 Msa1404410:CDS 60.0%
GTACTGCTCGTGCTGCACCT+AGG - tig0023062:52664-52683 Msa1404410:CDS 60.0%
CCCCCAAGATACGCCGATAC+TGG - tig0023062:52960-52979 Msa1404410:intron 60.0%
TGGGGTGTATAGCAGTCGGC+AGG - tig0023062:53218-53237 Msa1404410:CDS 60.0%
GGGGTGTATAGCAGTCGGCA+GGG - tig0023062:53219-53238 Msa1404410:CDS 60.0%
CGGCAGGGCATGAGTTATGG+TGG - tig0023062:53234-53253 Msa1404410:CDS 60.0%
! TATTCTGGTAGGGGCACGGG+TGG - tig0023062:53532-53551 Msa1404410:intron 60.0%
! GGGTGGCGGTAGCAGTTACA+TGG - tig0023062:53549-53568 Msa1404410:CDS 60.0%
AGCAGTTACATGGGCAGCGG+TGG - tig0023062:53559-53578 Msa1404410:CDS 60.0%
TACATGGGCAGCGGTGGTTC+GGG - tig0023062:53565-53584 Msa1404410:CDS 60.0%
AGGGTGGGGGGGTAAAACCA+GGG + tig0023062:54709-54728 None:intergenic 60.0%
TAGGGTGGGGGGGTAAAACC+AGG + tig0023062:54710-54729 None:intergenic 60.0%
TCAAGCTAGGTAGGGTGGGG+GGG + tig0023062:54720-54739 None:intergenic 60.0%
GGAGCATGACCGTGAGCGTG+CGG - tig0023062:50558-50577 Msa1404410:three_prime_UTR 65.0%
TGACCGTGAGCGTGCGGAGA+TGG - tig0023062:50564-50583 Msa1404410:three_prime_UTR 65.0%
CAGCCATCTCCGCACGCTCA+CGG + tig0023062:50570-50589 None:intergenic 65.0%
GCGTGCGGAGATGGCTGATG+TGG - tig0023062:50573-50592 Msa1404410:three_prime_UTR 65.0%
AGGCCACTTCAGAGAGGCCG+TGG - tig0023062:52147-52166 Msa1404410:CDS 65.0%
GCAGGTCGGCTGCTCCAAGA+AGG + tig0023062:52231-52250 None:intergenic 65.0%
CCCCGTAGTTTCTCGTCGCG+TGG - tig0023062:52252-52271 Msa1404410:CDS 65.0%
GCTCGTGCTGCACCTAGGAG+AGG - tig0023062:52669-52688 Msa1404410:CDS 65.0%
CTTGGATGGGAAGGGGGTGG+AGG + tig0023062:52741-52760 None:intergenic 65.0%
GGGGACTATCGCCCGAGTCG+CGG - tig0023062:52186-52205 Msa1404410:CDS 70.0%
GAAGGGGGTGGAGGAGGAGG+TGG + tig0023062:52732-52751 None:intergenic 70.0%
TGGGAAGGGGGTGGAGGAGG+AGG + tig0023062:52735-52754 None:intergenic 70.0%
GGATGGGAAGGGGGTGGAGG+AGG + tig0023062:52738-52757 None:intergenic 70.0%
! TCTGGTAGGGGCACGGGTGG+CGG - tig0023062:53535-53554 Msa1404410:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0023062 gene 49064 55490 49064 ID=Msa1404410;Name=Msa1404410
tig0023062 mRNA 49064 55490 49064 ID=Msa1404410-mRNA-1;Parent=Msa1404410;Name=Msa1404410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=138|0.90|0.91|1|0.81|0.83|12|1678|815
tig0023062 exon 49064 50774 49064 ID=Msa1404410-mRNA-1:exon:19807;Parent=Msa1404410-mRNA-1
tig0023062 exon 50953 51049 50953 ID=Msa1404410-mRNA-1:exon:19806;Parent=Msa1404410-mRNA-1
tig0023062 exon 51124 51211 51124 ID=Msa1404410-mRNA-1:exon:19805;Parent=Msa1404410-mRNA-1
tig0023062 exon 51296 51402 51296 ID=Msa1404410-mRNA-1:exon:19804;Parent=Msa1404410-mRNA-1
tig0023062 exon 51494 51603 51494 ID=Msa1404410-mRNA-1:exon:19803;Parent=Msa1404410-mRNA-1
tig0023062 exon 51727 52061 51727 ID=Msa1404410-mRNA-1:exon:19802;Parent=Msa1404410-mRNA-1
tig0023062 exon 52146 52431 52146 ID=Msa1404410-mRNA-1:exon:19801;Parent=Msa1404410-mRNA-1
tig0023062 exon 52505 52726 52505 ID=Msa1404410-mRNA-1:exon:19800;Parent=Msa1404410-mRNA-1
tig0023062 exon 53172 53411 53172 ID=Msa1404410-mRNA-1:exon:19799;Parent=Msa1404410-mRNA-1
tig0023062 exon 53533 53622 53533 ID=Msa1404410-mRNA-1:exon:19798;Parent=Msa1404410-mRNA-1
tig0023062 exon 53711 54270 53711 ID=Msa1404410-mRNA-1:exon:19797;Parent=Msa1404410-mRNA-1
tig0023062 exon 55073 55490 55073 ID=Msa1404410-mRNA-1:exon:19796;Parent=Msa1404410-mRNA-1
tig0023062 five_prime_UTR 55353 55490 55353 ID=Msa1404410-mRNA-1:five_prime_utr;Parent=Msa1404410-mRNA-1
tig0023062 CDS 55073 55352 55073 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 53711 54270 53711 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 53533 53622 53533 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 53172 53411 53172 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 52505 52726 52505 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 52146 52431 52146 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 51727 52061 51727 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 51494 51603 51494 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 51296 51402 51296 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 51124 51211 51124 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 50953 51049 50953 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 CDS 50742 50774 50742 ID=Msa1404410-mRNA-1:cds;Parent=Msa1404410-mRNA-1
tig0023062 three_prime_UTR 49064 50741 49064 ID=Msa1404410-mRNA-1:three_prime_utr;Parent=Msa1404410-mRNA-1
Gene Sequence

>Msa1404410

ATGCCTCCGAAGACGCCAAAGAGAGGTTCAGCGGGTAGTGGTTCAAAGAGGGGTGGCAGATTATCGAGAGGAACTGCGAAATCTGCACAGAATCAACAACAACAGCAATCTGAACCTGTTGAAGAGAAGACGGTGATTGAAGAAGAGATCAAGGTAGAAGAGAATCTCGTTGTTGAGGAAAAACCTGTGGTGGAAGAAGATAATCCTGTTGTTGAAGATAAAGCTATTGATATGAATCAAATTGCTCCTGAGGCTGTAGAAGATGCTAATCTAGCCAAAAAAGATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAGAGAGACGAGCGTCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGGGTTGACTATGATGAGAAGGAAATTGAACAGGAAGAGGGACATGAGGTGGGAGATGAAGTTGAGGAAGAACCTGAAGAAAATGTTGGTGAAGAAGGTGATTCAGGCGAGGAAGAAGTCGAAGATGGTCATGATGAAATTGAGGGAGAAGAGGATGACGAGCATGCTGATGAGGAGCATGACCGTGAGCGTGCGGAGATGGCTGATGTGGATGAAGAGGAACATCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCGGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTGATGATGAATCCTCAGACAAAAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTTAAAAACCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCGAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAAACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCATTCTTGGAATTTTCCTCCCGCTCAGATGCAATGGATGCCTTTAAGAGACTGCAGAAGAGGGATGTTACGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATTGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTGAAGAAATATGGCGAGGTTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTGCTCGTAGAAAGGACTATGGATTTGTTACCTTTGGCTCACACGATGCTGCTATAAGATGTGCTGACAGCATTACTGGTACAGAATTGGGTGAAGGTGACAAAAAGGCCAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTATCGCCCGAGTCGCGGATCTGCAATAATGTCAAGGCCTTCTTGGAGCAGCCGACCTGCACCCCGTAGTTTCTCGTCGCGTGGGGTAAGAGGAATTGGAAGTCGTGCTCCGCCAATCAGGTCTATCAGTGCTAGAGATAGACGCCCTGTCATGTCTATACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGATGCTGCATATTCAAAAAGCAGTGTGAAGAGAGATTATGGTCGGCGTGATGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGGATGACCTCTGAAAGACGCCCAACTTATAGGGATTATCCACCTCGTGGATCTGACTACTCTGATCTCCCTAGAAGTACTGCTCGTGCTGCACCTAGGAGAGGTTACGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCACCTCCTCCTCCACCCCCTTCCCATCCAAGTTATCGTGAAGGACGCCCTCGTGATTATGATTCTCTATCTGGCTCAAAACGTTCGTACGCTGCCGTGGATGATGTTCCCCCAAGATACGCCGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGAGTATGACTATGGTGGCAGTGCTTCACAGTACGGTGATGCTTATGGTGATAGAGTCGGAAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGGTGTATAGCAGTCGGCAGGGCATGAGTTATGGTGGAGGCTCTTATGGCGGTAATGATGTTGGAGGCATGTATTCATCAAGTTATGGCGGTGATTACGTTTCTCGTGGAAATGATGTAATCTTCCTGTTGGTGGCAGCTCATATTCATCAATGTATTCTGGTAGGGGCACGGGTGGCGGTAGCAGTTACATGGGCAGCGGTGGTTCGGGATCTTATTATTGAGATCCGACATAATAAATTGGCTGCAATAGGATGA
Protein sequence

>Msa1404410

MPPKTPKRGSAGSGSKRGGRLSRGTAKSAQNQQQQQSEPVEEKTVIEEEIKVEENLVVEEKPVVEEDNPVVEDKAIDMNQIAPEAVEDANLAKKDEEEVKESIDEYERDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEPEENVGEEGDSGEEEVEDGHDEIEGEEDDEHADEEHDRERAEMADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAIMSRPSWSSRPAPRSFSSRGVRGIGSRAPPIRSISARDRRPVMSIPVRSRPLPPPARSYDRRPADAAYSKSSVKRDYGRRDDLPPPRSRVAADYGSRMTSERRPTYRDYPPRGSDYSDLPRSTARAAPRRGYVDDGYSQRYERPPPPPPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGVYSSRQGMSYGGGSYGGNDVGGMYSSSYGGDYVSRGNDVIFLLVAAHIHQCILVGARVAVAVTWAAVVRDLIIEIRHNKLAAIG*