Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321440 | XP_003627843.1 | 85.938 | 192 | 13 | 1 | 80 | 257 | 1 | 192 | 1.15e-115 | 339 |
| Msa1321440 | XP_003627843.1 | 89.744 | 78 | 7 | 1 | 1 | 78 | 1 | 77 | 3.70e-36 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321440 | sp|Q9LK88|NQR_ARATH | 70.053 | 187 | 42 | 1 | 84 | 256 | 10 | 196 | 1.41e-87 | 261 |
| Msa1321440 | sp|Q9LK88|NQR_ARATH | 68.056 | 72 | 22 | 1 | 7 | 78 | 12 | 82 | 5.90e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321440 | B7FMX0 | 85.938 | 192 | 13 | 1 | 80 | 257 | 1 | 192 | 5.51e-116 | 339 |
| Msa1321440 | B7FMX0 | 89.744 | 78 | 7 | 1 | 1 | 78 | 1 | 77 | 1.77e-36 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa1321440 | 0.804264 | 2.348321e-49 | -8.615850e-47 |
| Msa0159750 | Msa1321440 | 0.803099 | 4.097248e-49 | -8.615850e-47 |
| Msa1061520 | Msa1321440 | 0.801614 | 8.286217e-49 | -8.615850e-47 |
| Msa0574170 | Msa1321440 | 0.804178 | 2.447471e-49 | -8.615850e-47 |
| Msa0575890 | Msa1321440 | 0.806746 | 7.081727e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321440 | MtrunA17_Chr8g0353131 | 85.938 | 192 | 13 | 1 | 80 | 257 | 1 | 192 | 1.06e-119 | 339 |
| Msa1321440 | MtrunA17_Chr8g0353131 | 89.744 | 78 | 7 | 1 | 1 | 78 | 1 | 77 | 3.40e-40 | 137 |
| Msa1321440 | MtrunA17_Chr3g0084221 | 69.792 | 192 | 43 | 2 | 80 | 257 | 1 | 191 | 2.23e-93 | 273 |
| Msa1321440 | MtrunA17_Chr3g0084221 | 69.231 | 78 | 22 | 2 | 1 | 78 | 1 | 76 | 8.57e-27 | 102 |
| Msa1321440 | MtrunA17_Chr3g0084161 | 65.957 | 188 | 50 | 1 | 84 | 257 | 4 | 191 | 3.05e-91 | 267 |
| Msa1321440 | MtrunA17_Chr3g0084161 | 69.737 | 76 | 22 | 1 | 3 | 78 | 2 | 76 | 6.27e-28 | 105 |
| Msa1321440 | MtrunA17_Chr3g0084201 | 67.725 | 189 | 46 | 2 | 83 | 257 | 3 | 190 | 4.69e-90 | 264 |
| Msa1321440 | MtrunA17_Chr3g0084201 | 64.474 | 76 | 25 | 1 | 3 | 78 | 2 | 75 | 1.06e-24 | 97.4 |
| Msa1321440 | MtrunA17_Chr3g0084191 | 58.115 | 191 | 63 | 2 | 82 | 255 | 2 | 192 | 1.65e-73 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321440 | AT3G27890.1 | 70.053 | 187 | 42 | 1 | 84 | 256 | 10 | 196 | 1.44e-88 | 261 |
| Msa1321440 | AT3G27890.1 | 68.056 | 72 | 22 | 1 | 7 | 78 | 12 | 82 | 5.99e-27 | 103 |
Find 58 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATATCAATATGATTT+TGG | 0.116343 | 8_4:-27068034 | Msa1321440:three_prime_UTR |
| ATCAAAGTGGCTGCTCTTTC+TGG | 0.131406 | 8_4:-27069629 | Msa1321440:CDS |
| TAGTGCATTAGAGTAATTTA+AGG | 0.190097 | 8_4:+27068064 | None:intergenic |
| AGCAAAGTGGCAGCTCTTTC+TGG | 0.228076 | 8_4:-27071374 | Msa1321440:CDS |
| TTTGACCAATGTGAATAATT+TGG | 0.258338 | 8_4:+27067890 | None:intergenic |
| ATATATCAAGCAGATGATTT+AGG | 0.273257 | 8_4:+27067867 | None:intergenic |
| CATCCAGACCACCAAATGTT+TGG | 0.317863 | 8_4:-27068343 | Msa1321440:CDS |
| CTTTGAAGAATGCAATTGAT+TGG | 0.350901 | 8_4:-27068367 | Msa1321440:CDS |
| AGCCCAAACATTTGGTGGTC+TGG | 0.353834 | 8_4:+27068340 | None:intergenic |
| GAAGAGAACCAGCACGGATA+AGG | 0.405445 | 8_4:+27071321 | None:intergenic |
| GCACCGGAGGAGACTTTGGC+GGG | 0.423331 | 8_4:-27068295 | Msa1321440:CDS |
| ATCCAGACCACCAAATGTTT+GGG | 0.423616 | 8_4:-27068342 | Msa1321440:CDS |
| TTTGAAGAATGCAATTGATT+GGG | 0.425883 | 8_4:-27068366 | Msa1321440:CDS |
| GCATTTACTCTAAGACTTCA+AGG | 0.439732 | 8_4:-27068098 | Msa1321440:CDS |
| ATAAGCACCGGAGGAGACTT+TGG | 0.451765 | 8_4:-27068299 | Msa1321440:CDS |
| TGGCGAAAAGCTTCAACAAC+AGG | 0.452851 | 8_4:+27069370 | None:intergenic |
| TTTCCAGCCCAAACATTTGG+TGG | 0.464756 | 8_4:+27068335 | None:intergenic |
| CACTCGGGCCTTATCCGTGC+TGG | 0.465157 | 8_4:-27071329 | Msa1321440:intron |
| AGAGAGAACCAGCACGGATA+AGG | 0.467956 | 8_4:+27069576 | None:intergenic |
| CGGCGATTTGATTGATGAAG+AGG | 0.499893 | 8_4:-27068159 | Msa1321440:CDS |
| CACTCAGGCCTTATCCGTGC+TGG | 0.501119 | 8_4:-27069584 | Msa1321440:intron |
| GCAGCAATTGAATTGAGTAA+AGG | 0.518179 | 8_4:-27069481 | Msa1321440:intron |
| AGACCACCAAATGTTTGGGC+TGG | 0.520482 | 8_4:-27068338 | Msa1321440:CDS |
| TTTGATTGATGAAGAGGCTA+AGG | 0.522697 | 8_4:-27068153 | Msa1321440:CDS |
| ATGAGTAAAGGAGCAATTGA+AGG | 0.530265 | 8_4:-27071223 | Msa1321440:CDS |
| TTGAGTAAAGGAGCAATTGA+AGG | 0.530953 | 8_4:-27069469 | Msa1321440:CDS |
| CAATCAATTGCATTCTTCAA+AGG | 0.536460 | 8_4:+27068368 | None:intergenic |
| GCAATTGAGCTGATGAGTAA+AGG | 0.543838 | 8_4:-27071235 | Msa1321440:CDS |
| AGCACCGGAGGAGACTTTGG+CGG | 0.558481 | 8_4:-27068296 | Msa1321440:CDS |
| ACCGGAGGAGACTTTGGCGG+GGG | 0.563200 | 8_4:-27068293 | Msa1321440:CDS |
| CAATATCATCTACGCCAAGT+TGG | 0.566210 | 8_4:-27068263 | Msa1321440:CDS |
| TCAAGATCAGTGTTATACAT+TGG | 0.571274 | 8_4:+27069412 | None:intergenic |
| TCAAGATCAGTGTTATACAT+TGG | 0.573256 | 8_4:+27071166 | None:intergenic |
| TGAGACCAAATTATTCACAT+TGG | 0.575526 | 8_4:-27067895 | Msa1321440:three_prime_UTR |
| TAGAAAAGCTTCATACCACT+CGG | 0.576776 | 8_4:-27071345 | Msa1321440:CDS |
| CGAAAAGCTTCAACAAGAGG+TGG | 0.577377 | 8_4:+27071127 | None:intergenic |
| TAACACTGATCTTGAAAACA+AGG | 0.588794 | 8_4:-27069404 | Msa1321440:CDS |
| GCAGCTGCAATCATAAGCAC+CGG | 0.589393 | 8_4:-27068311 | Msa1321440:CDS |
| TAGCGAAAAGCTTCAACAAG+AGG | 0.599734 | 8_4:+27071124 | None:intergenic |
| CGAAAAGCTTCAACAACAGG+TGG | 0.602230 | 8_4:+27069373 | None:intergenic |
| CACCGGAGGAGACTTTGGCG+GGG | 0.606035 | 8_4:-27068294 | Msa1321440:CDS |
| GATCGATATACACTCCAACT+TGG | 0.607122 | 8_4:+27068249 | None:intergenic |
| CCTGCAAAATTCAACGATGA+CGG | 0.608437 | 8_4:-27068179 | Msa1321440:CDS |
| AGAAAAGCTTCATACCACTC+AGG | 0.621659 | 8_4:-27069599 | Msa1321440:CDS |
| ACAGAACACTAGCTAAGTCA+TGG | 0.629230 | 8_4:-27071408 | Msa1321440:exon |
| AGAAAAGCTTCATACCACTC+GGG | 0.639695 | 8_4:-27071344 | Msa1321440:CDS |
| AACACTGATCTTGAGAACAA+AGG | 0.645350 | 8_4:-27071157 | Msa1321440:CDS |
| AATGCTCTTAGAAAGAACTC+AGG | 0.646361 | 8_4:+27068209 | None:intergenic |
| GGCAGCAGCAGTGAGCAAAG+TGG | 0.646639 | 8_4:-27071387 | Msa1321440:CDS |
| TATCAGCTTGAAGAATCTTG+TGG | 0.652286 | 8_4:+27069350 | None:intergenic |
| TATTAATCAACATCTATGTG+AGG | 0.655714 | 8_4:+27067935 | None:intergenic |
| ACAAAAGAAGAGAACCAGCA+CGG | 0.656806 | 8_4:+27071315 | None:intergenic |
| AGACAAAGAGAGAACCAGCA+CGG | 0.666728 | 8_4:+27069570 | None:intergenic |
| AACACTGATCTTGAAAACAA+GGG | 0.673165 | 8_4:-27069403 | Msa1321440:CDS |
| GCTGCAATCATAAGCACCGG+AGG | 0.686469 | 8_4:-27068308 | Msa1321440:CDS |
| CAGCACGGATAAGGCCTGAG+TGG | 0.690555 | 8_4:+27069585 | None:intergenic |
| CAGCACGGATAAGGCCCGAG+TGG | 0.709323 | 8_4:+27071330 | None:intergenic |
| GGCAACAGCAGTGATCAAAG+TGG | 0.716829 | 8_4:-27069642 | Msa1321440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGATACTTTAAATAAA+AGG | - | chr8_4:27068583-27068602 | Msa1321440:intron | 10.0% |
| !! | AATAAAATATCTTAAATCAA+AGG | - | chr8_4:27069295-27069314 | Msa1321440:intron | 10.0% |
| !! | TATAGTATAGATTAATTAAT+AGG | - | chr8_4:27069368-27069387 | Msa1321440:CDS | 10.0% |
| !!! | ATACTTAACAATTTTTATAA+TGG | - | chr8_4:27070336-27070355 | Msa1321440:intron | 10.0% |
| !!! | TAATTCTTTTTATTACAAAT+TGG | + | chr8_4:27070812-27070831 | None:intergenic | 10.0% |
| !! | TGACTATATATATAATACTA+CGG | - | chr8_4:27068336-27068355 | Msa1321440:CDS | 15.0% |
| !! | CTTTAAATAAAAGGTTAAAT+TGG | - | chr8_4:27068592-27068611 | Msa1321440:intron | 15.0% |
| !! | TAAAGAAAATACATGAATTT+GGG | + | chr8_4:27068634-27068653 | None:intergenic | 15.0% |
| !! | ATAAAGAAAATACATGAATT+TGG | + | chr8_4:27068635-27068654 | None:intergenic | 15.0% |
| !!! | ATAAAGAAAATAACATGTTT+TGG | - | chr8_4:27068672-27068691 | Msa1321440:intron | 15.0% |
| !! | TTTATAATAAAGATTGTTGT+TGG | - | chr8_4:27069027-27069046 | Msa1321440:intron | 15.0% |
| !!! | TTTTATTTACTATATACTAG+AGG | + | chr8_4:27069282-27069301 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATGAGTAAATGA+TGG | + | chr8_4:27069466-27069485 | None:intergenic | 15.0% |
| !!! | AAACTTAATGCATTTATTTT+TGG | + | chr8_4:27069518-27069537 | None:intergenic | 15.0% |
| !!! | TGATCTAGATTTTATTTTTT+TGG | - | chr8_4:27070010-27070029 | Msa1321440:intron | 15.0% |
| !!! | TTCTTTTATTCTTCTATTAT+TGG | + | chr8_4:27070048-27070067 | None:intergenic | 15.0% |
| !!! | ATATTTCTTTTGATGAATTA+AGG | - | chr8_4:27070163-27070182 | Msa1321440:intron | 15.0% |
| !! | TTTATACCATTTAAATACTA+CGG | + | chr8_4:27070625-27070644 | None:intergenic | 15.0% |
| !!! | TATATTTTTTCTTTTGAATC+AGG | - | chr8_4:27070735-27070754 | Msa1321440:intron | 15.0% |
| !!! | TTCAAATATCAATATGATTT+TGG | - | chr8_4:27071232-27071251 | Msa1321440:CDS | 15.0% |
| !! | ATATATATAGTCACATATGT+AGG | + | chr8_4:27068329-27068348 | None:intergenic | 20.0% |
| !! | AATAAAAGGTTAAATTGGAA+AGG | - | chr8_4:27068597-27068616 | Msa1321440:intron | 20.0% |
| !! | ATAAAAGGTTAAATTGGAAA+GGG | - | chr8_4:27068598-27068617 | Msa1321440:intron | 20.0% |
| !!! | TTTAAGGGTAATTTTTTTTG+TGG | + | chr8_4:27068999-27069018 | None:intergenic | 20.0% |
| !!! | TATATTTTTTGTTTTGTCGT+TGG | - | chr8_4:27069080-27069099 | Msa1321440:intron | 20.0% |
| !!! | TTACTTATGTGTTTTTTGTA+TGG | - | chr8_4:27069407-27069426 | Msa1321440:CDS | 20.0% |
| !! | ATTCATCAAAAGAAATATAC+AGG | + | chr8_4:27070161-27070180 | None:intergenic | 20.0% |
| !!! | CTTTGAAATTGTAATAGTTT+GGG | - | chr8_4:27070379-27070398 | Msa1321440:intron | 20.0% |
| !!! | TCTTTTTATTACAAATTGGT+CGG | + | chr8_4:27070808-27070827 | None:intergenic | 20.0% |
| !!! | TTGATATATACTGACATTTT+TGG | - | chr8_4:27071413-27071432 | Msa1321440:five_prime_UTR | 20.0% |
| !!! | TTTTTGGATTCAAGATATAT+TGG | - | chr8_4:27071429-27071448 | Msa1321440:five_prime_UTR | 20.0% |
| !!! | TACTCGATCATTTTTTATGA+TGG | - | chr8_4:27068427-27068446 | Msa1321440:intron | 25.0% |
| !!! | ATAACATGTTTTGGTTCTTT+TGG | - | chr8_4:27068681-27068700 | Msa1321440:intron | 25.0% |
| ! | ATAAAGAGAGTAAATGAGTT+TGG | + | chr8_4:27069345-27069364 | None:intergenic | 25.0% |
| ! | CCAAACTATTACAATTTCAA+AGG | + | chr8_4:27070381-27070400 | None:intergenic | 25.0% |
| !!! | CCTTTGAAATTGTAATAGTT+TGG | - | chr8_4:27070378-27070397 | Msa1321440:intron | 25.0% |
| ! | TAAATGGTATAAAGAAACTG+CGG | - | chr8_4:27070632-27070651 | Msa1321440:intron | 25.0% |
| ! | TTTGAAGAATGCAATTGATT+GGG | - | chr8_4:27070900-27070919 | Msa1321440:intron | 25.0% |
| ! | TAGTGCATTAGAGTAATTTA+AGG | + | chr8_4:27071205-27071224 | None:intergenic | 25.0% |
| !! | ATCAATATGATTTTGGACTT+TGG | - | chr8_4:27071239-27071258 | Msa1321440:intron | 25.0% |
| !! | GAGGAAATAATACATTTTCA+AGG | + | chr8_4:27071315-27071334 | None:intergenic | 25.0% |
| ! | TATTAATCAACATCTATGTG+AGG | + | chr8_4:27071334-27071353 | None:intergenic | 25.0% |
| ! | TTTGACCAATGTGAATAATT+TGG | + | chr8_4:27071379-27071398 | None:intergenic | 25.0% |
| ! | ATATATCAAGCAGATGATTT+AGG | + | chr8_4:27071402-27071421 | None:intergenic | 25.0% |
| CTTACAAATTGTTGTAGCTT+TGG | - | chr8_4:27068002-27068021 | Msa1321440:three_prime_UTR | 30.0% | |
| TCAAGATCAGTGTTATACAT+TGG | + | chr8_4:27068103-27068122 | None:intergenic | 30.0% | |
| ACATATATGGACATAGAAGA+GGG | + | chr8_4:27068405-27068424 | None:intergenic | 30.0% | |
| ATGATCGAGTATGACATATA+TGG | + | chr8_4:27068418-27068437 | None:intergenic | 30.0% | |
| !!! | GATGGTTGTTTCTTTTTGTT+TGG | - | chr8_4:27068445-27068464 | Msa1321440:intron | 30.0% |
| ACTCATTTATATACCTCTCT+AGG | + | chr8_4:27068521-27068540 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr8_4:27068951-27068970 | Msa1321440:intron | 30.0% | |
| !!! | AAGGGTAATTTTTTTTGTGG+TGG | + | chr8_4:27068996-27069015 | None:intergenic | 30.0% |
| ACTATATACTAGAGGAATGA+CGG | + | chr8_4:27069274-27069293 | None:intergenic | 30.0% | |
| !! | GTCTGATTTTTCTAGAGATT+AGG | + | chr8_4:27069572-27069591 | None:intergenic | 30.0% |
| AGAAAAATCAGACACAAGAA+AGG | - | chr8_4:27069579-27069598 | Msa1321440:intron | 30.0% | |
| !!! | GTTGTAGTTTTGAATTTGCA+TGG | - | chr8_4:27069750-27069769 | Msa1321440:intron | 30.0% |
| TCAAGATCAGTGTTATACAT+TGG | + | chr8_4:27068103-27068122 | None:intergenic | 30.0% | |
| TAACACTGATCTTGAAAACA+AGG | - | chr8_4:27069862-27069881 | Msa1321440:intron | 30.0% | |
| AACACTGATCTTGAAAACAA+GGG | - | chr8_4:27069863-27069882 | Msa1321440:intron | 30.0% | |
| TGTGAGAGAGTAATTATACT+CGG | + | chr8_4:27069960-27069979 | None:intergenic | 30.0% | |
| AGAGCCAATATATAGTACTT+AGG | - | chr8_4:27070197-27070216 | Msa1321440:intron | 30.0% | |
| TGGACCTAAGTACTATATAT+TGG | + | chr8_4:27070204-27070223 | None:intergenic | 30.0% | |
| !! | TTGTAGCTTTGAAATGATCA+TGG | + | chr8_4:27070514-27070533 | None:intergenic | 30.0% |
| TCTGAACCGTAGTATTTAAA+TGG | - | chr8_4:27070616-27070635 | Msa1321440:intron | 30.0% | |
| ACACAAAATAAAGGTGAAGA+TGG | + | chr8_4:27070872-27070891 | None:intergenic | 30.0% | |
| AGGAGCTAAACACAAAATAA+AGG | + | chr8_4:27070881-27070900 | None:intergenic | 30.0% | |
| CAATCAATTGCATTCTTCAA+AGG | + | chr8_4:27070901-27070920 | None:intergenic | 30.0% | |
| ! | CTTTGAAGAATGCAATTGAT+TGG | - | chr8_4:27070899-27070918 | Msa1321440:intron | 30.0% |
| TGAGACCAAATTATTCACAT+TGG | - | chr8_4:27071371-27071390 | Msa1321440:CDS | 30.0% | |
| !! | TCTGATCTTTTCAGGAGATT+AGG | + | chr8_4:27067826-27067845 | None:intergenic | 35.0% |
| ! | TTCTTGTGTCTGATCTTTTC+AGG | + | chr8_4:27067834-27067853 | None:intergenic | 35.0% |
| ! | GTGGTATGAAGCTTTTCTAA+GGG | + | chr8_4:27067920-27067939 | None:intergenic | 35.0% |
| ! | AGTGGTATGAAGCTTTTCTA+AGG | + | chr8_4:27067921-27067940 | None:intergenic | 35.0% |
| TAGAAAAGCTTCATACCACT+CGG | - | chr8_4:27067921-27067940 | Msa1321440:three_prime_UTR | 35.0% | |
| ATGAGTAAAGGAGCAATTGA+AGG | - | chr8_4:27068043-27068062 | Msa1321440:three_prime_UTR | 35.0% | |
| AACACTGATCTTGAGAACAA+AGG | - | chr8_4:27068109-27068128 | Msa1321440:CDS | 35.0% | |
| CATATATGGACATAGAAGAG+GGG | + | chr8_4:27068404-27068423 | None:intergenic | 35.0% | |
| GACATATATGGACATAGAAG+AGG | + | chr8_4:27068406-27068425 | None:intergenic | 35.0% | |
| ATTGAATTGTGAACCTAGAG+AGG | - | chr8_4:27068505-27068524 | Msa1321440:intron | 35.0% | |
| !!! | ATGTTTTGGTTCTTTTGGAC+TGG | - | chr8_4:27068686-27068705 | Msa1321440:intron | 35.0% |
| ! | GGACGTTTAAGGGTATAATT+GGG | + | chr8_4:27068906-27068925 | None:intergenic | 35.0% |
| ! | AGGACGTTTAAGGGTATAAT+TGG | + | chr8_4:27068907-27068926 | None:intergenic | 35.0% |
| !!! | TAATTTTTTTTGTGGTGGCC+GGG | + | chr8_4:27068991-27069010 | None:intergenic | 35.0% |
| !!! | GTAATTTTTTTTGTGGTGGC+CGG | + | chr8_4:27068992-27069011 | None:intergenic | 35.0% |
| CTATATACTAGAGGAATGAC+GGG | + | chr8_4:27069273-27069292 | None:intergenic | 35.0% | |
| AGAGAGTAAATGAGTTTGGT+TGG | + | chr8_4:27069341-27069360 | None:intergenic | 35.0% | |
| ACAGAACATTACCTAAGTCA+TGG | - | chr8_4:27069603-27069622 | Msa1321440:CDS | 35.0% | |
| GCAGCAATTGAATTGAGTAA+AGG | - | chr8_4:27069785-27069804 | Msa1321440:intron | 35.0% | |
| TTGAGTAAAGGAGCAATTGA+AGG | - | chr8_4:27069797-27069816 | Msa1321440:intron | 35.0% | |
| TATCAGCTTGAAGAATCTTG+TGG | + | chr8_4:27068165-27068184 | None:intergenic | 35.0% | |
| GTGAGAGAGTAATTATACTC+GGG | + | chr8_4:27069959-27069978 | None:intergenic | 35.0% | |
| GAGTATAATTACTCTCTCAC+AGG | - | chr8_4:27069959-27069978 | Msa1321440:intron | 35.0% | |
| TTACAACAATACACCTGCAT+CGG | - | chr8_4:27070226-27070245 | Msa1321440:intron | 35.0% | |
| TGACAGTCTCAACATTTCAA+TGG | - | chr8_4:27070414-27070433 | Msa1321440:intron | 35.0% | |
| !! | TAGCTTTGAAATGATCATGG+TGG | + | chr8_4:27070511-27070530 | None:intergenic | 35.0% |
| AAAGTGAAAGAACCGACAAA+CGG | - | chr8_4:27070540-27070559 | Msa1321440:intron | 35.0% | |
| !!! | ATATCCAACCGCTTTTTCAT+CGG | + | chr8_4:27070575-27070594 | None:intergenic | 35.0% |
| CTATATCTCCGAATGTAGAA+TGG | + | chr8_4:27070658-27070677 | None:intergenic | 35.0% | |
| TTCGGAGATATAGACACAAA+AGG | - | chr8_4:27070665-27070684 | Msa1321440:intron | 35.0% | |
| GAATGTTTGATGAGGAAGTT+CGG | + | chr8_4:27070691-27070710 | None:intergenic | 35.0% | |
| AGAATGCAGAATGTTTGATG+AGG | + | chr8_4:27070699-27070718 | None:intergenic | 35.0% | |
| AATGCTCTTAGAAAGAACTC+AGG | + | chr8_4:27071060-27071079 | None:intergenic | 35.0% | |
| TTTGATTGATGAAGAGGCTA+AGG | - | chr8_4:27071113-27071132 | Msa1321440:CDS | 35.0% | |
| ! | GCAAGTTCTTTTATCTTTGC+AGG | - | chr8_4:27071146-27071165 | Msa1321440:CDS | 35.0% |
| !! | GCATTTACTCTAAGACTTCA+AGG | - | chr8_4:27071168-27071187 | Msa1321440:CDS | 35.0% |
| ACAGAACACTAGCTAAGTCA+TGG | - | chr8_4:27067858-27067877 | Msa1321440:three_prime_UTR | 40.0% | |
| AGAAAAGCTTCATACCACTC+GGG | - | chr8_4:27067922-27067941 | Msa1321440:three_prime_UTR | 40.0% | |
| ACAAAAGAAGAGAACCAGCA+CGG | + | chr8_4:27067954-27067973 | None:intergenic | 40.0% | |
| GCAATTGAGCTGATGAGTAA+AGG | - | chr8_4:27068031-27068050 | Msa1321440:three_prime_UTR | 40.0% | |
| TAGCGAAAAGCTTCAACAAG+AGG | + | chr8_4:27068145-27068164 | None:intergenic | 40.0% | |
| ! | CTGAATCAGTATAGAAGCAC+AGG | + | chr8_4:27068205-27068224 | None:intergenic | 40.0% |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | - | chr8_4:27068929-27068948 | Msa1321440:intron | 40.0% |
| CATAAAATATGCAAGGTCCG+AGG | - | chr8_4:27068958-27068977 | Msa1321440:intron | 40.0% | |
| !!! | AATTTTTTTTGTGGTGGCCG+GGG | + | chr8_4:27068990-27069009 | None:intergenic | 40.0% |
| ! | GTGGTATGAAGCTTTTCTGA+GGG | + | chr8_4:27069665-27069684 | None:intergenic | 40.0% |
| ! | AGTGGTATGAAGCTTTTCTG+AGG | + | chr8_4:27069666-27069685 | None:intergenic | 40.0% |
| AGAAAAGCTTCATACCACTC+AGG | - | chr8_4:27067922-27067941 | Msa1321440:three_prime_UTR | 40.0% | |
| TGCTATATAGTCGCGATAGT+AGG | + | chr8_4:27070130-27070149 | None:intergenic | 40.0% | |
| GCAGGTGTATTGTTGTAATC+TGG | + | chr8_4:27070224-27070243 | None:intergenic | 40.0% | |
| CATATATAGACACCGAAGAG+TGG | + | chr8_4:27070312-27070331 | None:intergenic | 40.0% | |
| AGCGCTAAAGCTATCATGTA+GGG | + | chr8_4:27070442-27070461 | None:intergenic | 40.0% | |
| AAGCGCTAAAGCTATCATGT+AGG | + | chr8_4:27070443-27070462 | None:intergenic | 40.0% | |
| !! | TGATAGCTTTAGCGCTTGAT+TGG | - | chr8_4:27070446-27070465 | Msa1321440:intron | 40.0% |
| ! | GATCATGGTGGAAAGTCATT+GGG | + | chr8_4:27070499-27070518 | None:intergenic | 40.0% |
| ! | TGATCATGGTGGAAAGTCAT+TGG | + | chr8_4:27070500-27070519 | None:intergenic | 40.0% |
| GGACAATTCCGATGAAAAAG+CGG | - | chr8_4:27070564-27070583 | Msa1321440:intron | 40.0% | |
| AATTCCGATGAAAAAGCGGT+TGG | - | chr8_4:27070568-27070587 | Msa1321440:intron | 40.0% | |
| GATGAAAAAGCGGTTGGATA+TGG | - | chr8_4:27070574-27070593 | Msa1321440:intron | 40.0% | |
| ATCCAGACCACCAAATGTTT+GGG | - | chr8_4:27070924-27070943 | Msa1321440:intron | 40.0% | |
| CAATATCATCTACGCCAAGT+TGG | - | chr8_4:27071003-27071022 | Msa1321440:intron | 40.0% | |
| GATCGATATACACTCCAACT+TGG | + | chr8_4:27071020-27071039 | None:intergenic | 40.0% | |
| ! | TCATCGTTGAATTTTGCAGG+TGG | + | chr8_4:27071087-27071106 | None:intergenic | 40.0% |
| CCTGCAAAATTCAACGATGA+CGG | - | chr8_4:27071087-27071106 | Msa1321440:intron | 40.0% | |
| CGAAAAGCTTCAACAAGAGG+TGG | + | chr8_4:27068142-27068161 | None:intergenic | 45.0% | |
| AGGGGCGATATGGTTCAAAA+GGG | + | chr8_4:27068379-27068398 | None:intergenic | 45.0% | |
| AAGGGGCGATATGGTTCAAA+AGG | + | chr8_4:27068380-27068399 | None:intergenic | 45.0% | |
| TGGACATAGAAGAGGGGTAA+GGG | + | chr8_4:27068398-27068417 | None:intergenic | 45.0% | |
| ATGGACATAGAAGAGGGGTA+AGG | + | chr8_4:27068399-27068418 | None:intergenic | 45.0% | |
| AAGCTCACGAGGACGTTTAA+GGG | + | chr8_4:27068916-27068935 | None:intergenic | 45.0% | |
| TAAGCTCACGAGGACGTTTA+AGG | + | chr8_4:27068917-27068936 | None:intergenic | 45.0% | |
| ATCAAAGTGGCTGCTCTTTC+TGG | - | chr8_4:27069637-27069656 | Msa1321440:CDS | 45.0% | |
| AGACAAAGAGAGAACCAGCA+CGG | + | chr8_4:27069699-27069718 | None:intergenic | 45.0% | |
| CGAAAAGCTTCAACAACAGG+TGG | + | chr8_4:27069896-27069915 | None:intergenic | 45.0% | |
| TGGCGAAAAGCTTCAACAAC+AGG | + | chr8_4:27069899-27069918 | None:intergenic | 45.0% | |
| GTCGCGATAGTAGGTATCAT+TGG | + | chr8_4:27070121-27070140 | None:intergenic | 45.0% | |
| !! | GCGCTTGATTGGTAATGCAT+AGG | - | chr8_4:27070457-27070476 | Msa1321440:intron | 45.0% |
| AACTGCGGCCATTCTACATT+CGG | - | chr8_4:27070647-27070666 | Msa1321440:intron | 45.0% | |
| CATCCAGACCACCAAATGTT+TGG | - | chr8_4:27070923-27070942 | Msa1321440:intron | 45.0% | |
| TTTCCAGCCCAAACATTTGG+TGG | + | chr8_4:27070934-27070953 | None:intergenic | 45.0% | |
| ! | GCTTTTCCAGCCCAAACATT+TGG | + | chr8_4:27070937-27070956 | None:intergenic | 45.0% |
| ! | CCGTCATCGTTGAATTTTGC+AGG | + | chr8_4:27071090-27071109 | None:intergenic | 45.0% |
| CGGCGATTTGATTGATGAAG+AGG | - | chr8_4:27071107-27071126 | Msa1321440:CDS | 45.0% | |
| !! | TAAAGAATAAATAAAAAAAA+TGG | + | chr8_4:27068834-27068853 | None:intergenic | 5.0% |
| !! | TTATAAAAAAAATTGTTTAA+GGG | + | chr8_4:27069014-27069033 | None:intergenic | 5.0% |
| !! | ATTATAAAAAAAATTGTTTA+AGG | + | chr8_4:27069015-27069034 | None:intergenic | 5.0% |
| AGCAAAGTGGCAGCTCTTTC+TGG | - | chr8_4:27067892-27067911 | Msa1321440:three_prime_UTR | 50.0% | |
| GAAGAGAACCAGCACGGATA+AGG | + | chr8_4:27067948-27067967 | None:intergenic | 50.0% | |
| GGACATAGAAGAGGGGTAAG+GGG | + | chr8_4:27068397-27068416 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | + | chr8_4:27068927-27068946 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | - | chr8_4:27068924-27068943 | Msa1321440:intron | 50.0% | |
| CACTGCTGTTGCCATGACTT+AGG | + | chr8_4:27069617-27069636 | None:intergenic | 50.0% | |
| GGCAACAGCAGTGATCAAAG+TGG | - | chr8_4:27069624-27069643 | Msa1321440:CDS | 50.0% | |
| AGAGAGAACCAGCACGGATA+AGG | + | chr8_4:27069693-27069712 | None:intergenic | 50.0% | |
| AAGGAGCTTTGCTAGCGAAG+GGG | + | chr8_4:27070277-27070296 | None:intergenic | 50.0% | |
| GAAGGAGCTTTGCTAGCGAA+GGG | + | chr8_4:27070278-27070297 | None:intergenic | 50.0% | |
| TGAAGGAGCTTTGCTAGCGA+AGG | + | chr8_4:27070279-27070298 | None:intergenic | 50.0% | |
| ! | CATGGTGGAAAGTCATTGGG+AGG | + | chr8_4:27070496-27070515 | None:intergenic | 50.0% |
| GTGAAAGAACCGACAAACGG+TGG | - | chr8_4:27070543-27070562 | Msa1321440:intron | 50.0% | |
| CGGAATTGTCCACCGTTTGT+CGG | + | chr8_4:27070555-27070574 | None:intergenic | 50.0% | |
| AAAGCGGTTGGATATGGCTC+AGG | - | chr8_4:27070580-27070599 | Msa1321440:intron | 50.0% | |
| AAGCGGTTGGATATGGCTCA+GGG | - | chr8_4:27070581-27070600 | Msa1321440:intron | 50.0% | |
| ! | AGCCCAAACATTTGGTGGTC+TGG | + | chr8_4:27070929-27070948 | None:intergenic | 50.0% |
| AGACCACCAAATGTTTGGGC+TGG | - | chr8_4:27070928-27070947 | Msa1321440:intron | 50.0% | |
| GCAGCTGCAATCATAAGCAC+CGG | - | chr8_4:27070955-27070974 | Msa1321440:intron | 50.0% | |
| !! | ATAAGCACCGGAGGAGACTT+TGG | - | chr8_4:27070967-27070986 | Msa1321440:intron | 50.0% |
| AAGAGGGGTAAGGGGCGATA+TGG | + | chr8_4:27068389-27068408 | None:intergenic | 55.0% | |
| AAGGTCCGAGGTTCAAACCC+CGG | - | chr8_4:27068970-27068989 | Msa1321440:intron | 55.0% | |
| TACACCTGCATCGGACATCG+AGG | - | chr8_4:27070235-27070254 | Msa1321440:intron | 55.0% | |
| ACACCTGCATCGGACATCGA+GGG | - | chr8_4:27070236-27070255 | Msa1321440:intron | 55.0% | |
| ATTCCCTCGATGTCCGATGC+AGG | + | chr8_4:27070242-27070261 | None:intergenic | 55.0% | |
| AGACACCGAAGAGTGGCAAG+TGG | + | chr8_4:27070305-27070324 | None:intergenic | 55.0% | |
| !! | GCTGCAATCATAAGCACCGG+AGG | - | chr8_4:27070958-27070977 | Msa1321440:intron | 55.0% |
| GGCAGCAGCAGTGAGCAAAG+TGG | - | chr8_4:27067879-27067898 | Msa1321440:three_prime_UTR | 60.0% | |
| CAGCACGGATAAGGCCTGAG+TGG | + | chr8_4:27069684-27069703 | None:intergenic | 60.0% | |
| ! | CACTCAGGCCTTATCCGTGC+TGG | - | chr8_4:27069682-27069701 | Msa1321440:intron | 60.0% |
| TTTGCTAGCGAAGGGGCGAC+GGG | + | chr8_4:27070270-27070289 | None:intergenic | 60.0% | |
| CTTTGCTAGCGAAGGGGCGA+CGG | + | chr8_4:27070271-27070290 | None:intergenic | 60.0% | |
| AGAGTGGCAAGTGGCGGTGA+AGG | + | chr8_4:27070296-27070315 | None:intergenic | 60.0% | |
| CACCGCCACTTGCCACTCTT+CGG | - | chr8_4:27070297-27070316 | Msa1321440:intron | 60.0% | |
| CACCGAAGAGTGGCAAGTGG+CGG | + | chr8_4:27070302-27070321 | None:intergenic | 60.0% | |
| ! | AGCACCGGAGGAGACTTTGG+CGG | - | chr8_4:27070970-27070989 | Msa1321440:intron | 60.0% |
| CAGCACGGATAAGGCCCGAG+TGG | + | chr8_4:27067939-27067958 | None:intergenic | 65.0% | |
| ! | CACTCGGGCCTTATCCGTGC+TGG | - | chr8_4:27067937-27067956 | Msa1321440:three_prime_UTR | 65.0% |
| GGTGGCCGGGGTTTGAACCT+CGG | + | chr8_4:27068978-27068997 | None:intergenic | 65.0% | |
| TTGCTAGCGAAGGGGCGACG+GGG | + | chr8_4:27070269-27070288 | None:intergenic | 65.0% | |
| GCACCGGAGGAGACTTTGGC+GGG | - | chr8_4:27070971-27070990 | Msa1321440:intron | 65.0% | |
| CACCGGAGGAGACTTTGGCG+GGG | - | chr8_4:27070972-27070991 | Msa1321440:intron | 65.0% | |
| ACCGGAGGAGACTTTGGCGG+GGG | - | chr8_4:27070973-27070992 | Msa1321440:intron | 65.0% | |
| TCCCCCGCCAAAGTCTCCTC+CGG | + | chr8_4:27070977-27070996 | None:intergenic | 65.0% | |
| CTAGCGAAGGGGCGACGGGG+TGG | + | chr8_4:27070266-27070285 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 27067808 | 27071480 | 27067808 | ID=Msa1321440;Name=Msa1321440 |
| chr8_4 | mRNA | 27067808 | 27071480 | 27067808 | ID=Msa1321440-mRNA-1;Parent=Msa1321440;Name=Msa1321440-mRNA-1;_AED=0.25;_eAED=0.25;_QI=69|0.25|0.4|1|0.5|0.6|5|280|257 |
| chr8_4 | exon | 27067808 | 27068392 | 27067808 | ID=Msa1321440-mRNA-1:exon:9198;Parent=Msa1321440-mRNA-1 |
| chr8_4 | exon | 27069350 | 27069499 | 27069350 | ID=Msa1321440-mRNA-1:exon:9197;Parent=Msa1321440-mRNA-1 |
| chr8_4 | exon | 27069585 | 27069668 | 27069585 | ID=Msa1321440-mRNA-1:exon:9196;Parent=Msa1321440-mRNA-1 |
| chr8_4 | exon | 27071104 | 27071256 | 27071104 | ID=Msa1321440-mRNA-1:exon:9195;Parent=Msa1321440-mRNA-1 |
| chr8_4 | exon | 27071330 | 27071480 | 27071330 | ID=Msa1321440-mRNA-1:exon:9194;Parent=Msa1321440-mRNA-1 |
| chr8_4 | five_prime_UTR | 27071412 | 27071480 | 27071412 | ID=Msa1321440-mRNA-1:five_prime_utr;Parent=Msa1321440-mRNA-1 |
| chr8_4 | CDS | 27071330 | 27071411 | 27071330 | ID=Msa1321440-mRNA-1:cds;Parent=Msa1321440-mRNA-1 |
| chr8_4 | CDS | 27071104 | 27071256 | 27071104 | ID=Msa1321440-mRNA-1:cds;Parent=Msa1321440-mRNA-1 |
| chr8_4 | CDS | 27069585 | 27069668 | 27069585 | ID=Msa1321440-mRNA-1:cds;Parent=Msa1321440-mRNA-1 |
| chr8_4 | CDS | 27069350 | 27069499 | 27069350 | ID=Msa1321440-mRNA-1:cds;Parent=Msa1321440-mRNA-1 |
| chr8_4 | CDS | 27068088 | 27068392 | 27068088 | ID=Msa1321440-mRNA-1:cds;Parent=Msa1321440-mRNA-1 |
| chr8_4 | three_prime_UTR | 27067808 | 27068087 | 27067808 | ID=Msa1321440-mRNA-1:three_prime_utr;Parent=Msa1321440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
