AlfalfaGEDB | Msa0575890

M. sativa cultivar zhongmu-4 / Msa0575890

KEGG: -
GO: -
PFAM: PF11460.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575890	XP_003631130.1	65.990	197	32	3	1	166	4	196	6.11e-72	225

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575890	G7LE74	65.990	197	32	3	1	166	4	196	2.92e-72	225

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0575890	0.813638	2.312837e-51	-8.615850e-47
Msa0005690	Msa0575890	0.813831	2.097025e-51	-8.615850e-47
Msa0006700	Msa0575890	0.833559	4.973954e-56	-8.615850e-47
Msa0012780	Msa0575890	-0.810838	9.443929e-51	-8.615850e-47
Msa0014410	Msa0575890	0.802326	5.916366e-49	-8.615850e-47
Msa0017420	Msa0575890	0.813487	2.497156e-51	-8.615850e-47
Msa0020630	Msa0575890	0.828609	8.176426e-55	-8.615850e-47
Msa0046360	Msa0575890	0.803915	2.775267e-49	-8.615850e-47
Msa0051100	Msa0575890	0.803959	2.717057e-49	-8.615850e-47
Msa0053960	Msa0575890	0.803562	3.285015e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575890	MtrunA17_Chr8g0393171	89.796	147	11	2	24	166	12	158	1.26e-74	220

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575890	AT3G17930.1	78.095	105	23	0	62	166	84	188	5.76e-58	179

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Find 62 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATAGCTTCAAATAAA+TGG	0.307664	4_1:-79869537	None:intergenic
AAATGTTGTTCAACTTGTGC+TGG	0.438263	4_1:+79868285	Msa0575890:CDS
AACAACATTGAAAGGTGAAG+AGG	0.612554	4_1:-79867678	None:intergenic
AACCGAAAACATAATATATA+TGG	0.289332	4_1:+79869285	Msa0575890:three_prime_UTR
AATGTTGTTAACGCAGCCAC+AGG	0.542166	4_1:+79867692	Msa0575890:CDS
ACAAACGCGTTTGTATTGTT+TGG	0.408535	4_1:+79867507	Msa0575890:five_prime_UTR
ACAACATTTCCAGCTTGTAG+TGG	0.569187	4_1:-79868271	None:intergenic
ACATTGAAAGGTGAAGAGGC+AGG	0.641397	4_1:-79867674	None:intergenic
ACGCGTTTGTATTGTTTGGT+TGG	0.486626	4_1:+79867511	Msa0575890:five_prime_UTR
AGATGTAAATTACTATCATT+TGG	0.390035	4_1:+79869680	Msa0575890:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTATTGTTTGGTTGGAT+TGG	+	chr4_1:79867516-79867535	Msa0575890:five_prime_UTR	30.0%
ATACGCAGAAAAAACTTCTT+AGG	-	chr4_1:79867589-79867608	None:intergenic	30.0%
AAAAATGAAGTTTGTACCTG+TGG	-	chr4_1:79867711-79867730	None:intergenic	30.0%
AAATTGAATTGCTCATCATC+AGG	+	chr4_1:79867772-79867791	Msa0575890:intron	30.0%
AGTCTGATTATTATTAGAGG+AGG	-	chr4_1:79867908-79867927	None:intergenic	30.0%
TCTTTCCTTGAATATCCAAA+TGG	-	chr4_1:79868049-79868068	None:intergenic	30.0%
GGCATGCTTAAAACAATAAA+AGG	-	chr4_1:79868441-79868460	None:intergenic	30.0%
ATACTTTATGTAGTAGTCTG+CGG	+	chr4_1:79868503-79868522	Msa0575890:intron	30.0%
CATTTGTTTGACAAGAACTT+TGG	-	chr4_1:79868707-79868726	None:intergenic	30.0%
GATGACTGAAGTTATAAACT+TGG	+	chr4_1:79869040-79869059	Msa0575890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	79867505	79869760	79867505	ID=Msa0575890;Name=Msa0575890
chr4_1	mRNA	79867505	79869760	79867505	ID=Msa0575890-mRNA-1;Parent=Msa0575890;Name=Msa0575890-mRNA-1;_AED=0.09;_eAED=0.15;_QI=115\|0.5\|0.8\|1\|1\|1\|5\|545\|166
chr4_1	exon	79867505	79867713	79867505	ID=Msa0575890-mRNA-1:exon:28525;Parent=Msa0575890-mRNA-1
chr4_1	exon	79867858	79867937	79867858	ID=Msa0575890-mRNA-1:exon:28526;Parent=Msa0575890-mRNA-1
chr4_1	exon	79868037	79868129	79868037	ID=Msa0575890-mRNA-1:exon:28527;Parent=Msa0575890-mRNA-1
chr4_1	exon	79868256	79868414	79868256	ID=Msa0575890-mRNA-1:exon:28528;Parent=Msa0575890-mRNA-1
chr4_1	exon	79869141	79869760	79869141	ID=Msa0575890-mRNA-1:exon:28529;Parent=Msa0575890-mRNA-1
chr4_1	five_prime_UTR	79867505	79867619	79867505	ID=Msa0575890-mRNA-1:five_prime_utr;Parent=Msa0575890-mRNA-1
chr4_1	CDS	79867620	79867713	79867620	ID=Msa0575890-mRNA-1:cds;Parent=Msa0575890-mRNA-1
chr4_1	CDS	79867858	79867937	79867858	ID=Msa0575890-mRNA-1:cds;Parent=Msa0575890-mRNA-1
chr4_1	CDS	79868037	79868129	79868037	ID=Msa0575890-mRNA-1:cds;Parent=Msa0575890-mRNA-1
chr4_1	CDS	79868256	79868414	79868256	ID=Msa0575890-mRNA-1:cds;Parent=Msa0575890-mRNA-1
chr4_1	CDS	79869141	79869215	79869141	ID=Msa0575890-mRNA-1:cds;Parent=Msa0575890-mRNA-1
chr4_1	three_prime_UTR	79869216	79869760	79869216	ID=Msa0575890-mRNA-1:three_prime_utr;Parent=Msa0575890-mRNA-1

Gene Sequence

>Msa0575890

ATGATGATGACTAAATCTTTTACAATTTCTGCTTTACCACCTTTCTTACTACGACCTGCCTCTTCACCTTTCAATGTTGTTAACGCAGCCACAGATTCTCTATCCCTTCTTCAAACTCCTCCAATGATTTGGATCAGGACACCTCCTCTAATAATAATCAGACTAAGGCATGATACTAAGGCACCATTTGGATATTCAAGGAAAGATGTCATATTAATCGGACTTGGAGTTACTCTCCTTGGCATTGCCTTAAAATCCGGACTTGAGTTTGCAGGATTTGATCCACTACAAGCTGGAAATGTTGTTCAACTTGTGCTGGTTTTGGGCCTCACTGTTGGATGGATCTCAACATATATCTTCAGAGTCTCAAACAAGGAAATGACATATGCACAACAGCTACGTGACTACGAAAGTAAAGTCATGGAGAAGCGGTTAGAGTCCCTAACAGAAGCAGAGCTACAAGTACTGCTTCAAGAAGTCGAGGAAGAGAAGAGTCGTTAG

Protein sequence

>Msa0575890

MMMTKSFTISALPPFLLRPASSPFNVVNAATDSLSLLQTPPMIWIRTPPLIIIRLRHDTKAPFGYSRKDVILIGLGVTLLGIALKSGLEFAGFDPLQAGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYESKVMEKRLESLTEAELQVLLQEVEEEKSR*