AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0020630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020630 MtrunA17_Chr1g0172361 95.714 420 18 0 1 420 1 420 0.0 834
Msa0020630 MtrunA17_Chr7g0249581 39.779 362 207 6 62 416 100 457 4.21e-73 236
Msa0020630 MtrunA17_Chr7g0271771 32.000 325 207 8 102 417 146 465 1.87e-40 150
Msa0020630 MtrunA17_Chr7g0270701 29.730 222 150 3 189 406 164 383 2.49e-14 74.3
Msa0020630 MtrunA17_Chr7g0268791 25.840 387 240 13 46 408 25 388 4.19e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020630 AT3G57190.1 53.769 398 172 6 25 419 12 400 3.17e-143 414
Msa0020630 AT5G36170.1 38.462 377 225 5 47 416 66 442 1.63e-76 245
Msa0020630 AT5G36170.2 38.462 377 225 5 47 416 65 441 1.71e-76 245
Msa0020630 AT5G36170.4 32.803 314 192 6 47 341 65 378 2.52e-44 159
Msa0020630 AT5G36170.3 32.803 314 192 6 47 341 66 379 2.63e-44 159
Msa0020630 AT1G56350.1 33.231 325 207 7 101 418 152 473 2.29e-42 155
Msa0020630 AT3G62910.1 24.789 355 247 10 73 414 50 397 4.21e-15 77.0
Msa0020630 AT2G47020.4 29.004 231 157 4 189 414 103 331 4.62e-12 67.4
Msa0020630 AT2G47020.1 29.004 231 157 4 189 414 168 396 7.86e-12 67.0
Msa0020630 AT2G47020.3 32.121 165 106 3 189 349 168 330 5.39e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCATCCTAAATAATTTA+TGG 0.193640 1_1:-36135716 None:intergenic
ACATTACTGTATTCTTAATT+TGG 0.213787 1_1:+36135877 Msa0020630:three_prime_UTR
CCTTGTGAATATGGAAACTA+TGG 0.221201 1_1:+36130055 Msa0020630:exon
TTCTTATCCATAAATTATTT+AGG 0.222589 1_1:+36135709 Msa0020630:three_prime_UTR
CAAGGAGTTGGTAGTATAAA+TGG 0.246573 1_1:+36135469 Msa0020630:CDS
TAGGATTTACTTCAATTCTT+TGG 0.260548 1_1:+36135775 Msa0020630:three_prime_UTR
GAGATATCCAAGCTTCTTAA+AGG 0.276860 1_1:+36132689 Msa0020630:CDS
ATGTGCTTATGGCTATCTTT+TGG 0.289466 1_1:+36133023 Msa0020630:CDS
AGACCAAAACCTTGTGAATA+TGG 0.297820 1_1:+36130046 Msa0020630:exon
TCCTTCATAACCTTGTCTTT+TGG 0.304609 1_1:-36132932 None:intergenic
TTTCCATATTCACAAGGTTT+TGG 0.305814 1_1:-36130049 None:intergenic
ATCTCGTCTCCCTTGATTCA+TGG 0.321150 1_1:+36134448 Msa0020630:CDS
CATTGCTAACAACAATAATA+AGG 0.325730 1_1:+36130205 Msa0020630:CDS
ATTCTTCTTCCTCAACCATT+TGG 0.327468 1_1:-36130132 None:intergenic
TATGTCAGTACAGGCAAAAT+TGG 0.335794 1_1:-36135830 None:intergenic
GAGATGAATGTTATTGATTA+CGG 0.351605 1_1:+36132608 Msa0020630:CDS
TTTGAATTTGAATGTGCTTA+TGG 0.354922 1_1:+36133012 Msa0020630:CDS
CTTTCATCTTATTTGCAAAC+TGG 0.356322 1_1:-36135402 None:intergenic
TGATATGGCAGGAGCATGTT+TGG 0.368531 1_1:+36132718 Msa0020630:CDS
TCTTAAAGGGCCATTTGATA+TGG 0.373189 1_1:+36132703 Msa0020630:CDS
AGATGAATGTTATTGATTAC+GGG 0.377034 1_1:+36132609 Msa0020630:CDS
TGCATTCGTCATATACCTAC+TGG 0.380498 1_1:+36134502 Msa0020630:CDS
ACATCATGTACTAACTTGTA+TGG 0.392795 1_1:-36135553 None:intergenic
CCCATCCAAGGTACATTTGT+AGG 0.393835 1_1:-36132909 None:intergenic
AAGGAGTTCACCACCTCATA+AGG 0.397909 1_1:+36133052 Msa0020630:CDS
GTTGTATGCATCAACAGCTT+TGG 0.415883 1_1:+36131992 Msa0020630:CDS
TGCATCAACAGCTTTGGAAA+TGG 0.426629 1_1:+36131998 Msa0020630:CDS
AAATGGCCCTTTAAGAAGCT+TGG 0.428987 1_1:-36132696 None:intergenic
TTGGATTAAGCAGGAAGAAA+TGG 0.429971 1_1:+36132031 Msa0020630:CDS
CTTATTATTGTTGTTAGCAA+TGG 0.431641 1_1:-36130204 None:intergenic
TTTCTGTTCTCCATGAATCA+AGG 0.438309 1_1:-36134458 None:intergenic
CATTCGGAGAACCCCTTATG+AGG 0.442926 1_1:-36133065 None:intergenic
AATAGACGTGAGCAACATAC+TGG 0.450203 1_1:+36132658 Msa0020630:CDS
TTAATATGAGCTGCAATAAG+AGG 0.455039 1_1:-36135631 None:intergenic
CTTTAGAGAATCAACTACTT+TGG 0.455693 1_1:-36132123 None:intergenic
AGGAGTTCACCACCTCATAA+GGG 0.456040 1_1:+36133053 Msa0020630:CDS
AGATATCCAAGCTTCTTAAA+GGG 0.458376 1_1:+36132690 Msa0020630:CDS
GAATGTCGTTGGACTTAGTT+GGG 0.470599 1_1:-36132079 None:intergenic
TCCTACAAATGTACCTTGGA+TGG 0.475306 1_1:+36132908 Msa0020630:CDS
TTCCTTCGTTCAGCTCCAAA+TGG 0.477652 1_1:+36130117 Msa0020630:CDS
ATATGACGAATGCAAACTAT+AGG 0.480794 1_1:-36134493 None:intergenic
CTTTGAAAAGATGCCGGTAG+TGG 0.481878 1_1:-36132750 None:intergenic
TTCTGTTCTCCATGAATCAA+GGG 0.482036 1_1:-36134457 None:intergenic
AGAATGTCGTTGGACTTAGT+TGG 0.486932 1_1:-36132080 None:intergenic
AGAAGCAAGTTGGATTAAGC+AGG 0.495038 1_1:+36132022 Msa0020630:CDS
GACAGGTGTTTGATCGAGAA+TGG 0.495149 1_1:+36132964 Msa0020630:CDS
CAAAGTAGTTGATTCTCTAA+AGG 0.495997 1_1:+36132124 Msa0020630:CDS
TTTGGTTACCTTATCTTCGA+AGG 0.504542 1_1:-36129973 None:intergenic
CGTTCAGCTCCAAATGGTTG+AGG 0.512689 1_1:+36130123 Msa0020630:CDS
CATGCTCCTGCCATATCAAA+TGG 0.512944 1_1:-36132713 None:intergenic
AAAGGGCCATTTGATATGGC+AGG 0.516727 1_1:+36132707 Msa0020630:CDS
GGGATAACTGTCCAATCCTC+TGG 0.523138 1_1:+36134523 Msa0020630:CDS
ATGAAGGAAGGATTGTTGAC+AGG 0.525711 1_1:+36132947 Msa0020630:CDS
ATATATGCATACCAGAGGAT+TGG 0.533561 1_1:-36134534 None:intergenic
GCCAAAAGACAAGGTTATGA+AGG 0.538834 1_1:+36132931 Msa0020630:CDS
TGATTCATGGAGAACAGAAA+AGG 0.539765 1_1:+36134461 Msa0020630:CDS
CAACGACATTCTTGTCAAGT+TGG 0.539891 1_1:+36132091 Msa0020630:CDS
CTTGTGAATATGGAAACTAT+GGG 0.542488 1_1:+36130056 Msa0020630:exon
TTGGTTACCTTATCTTCGAA+GGG 0.543765 1_1:-36129972 None:intergenic
TCAAGCTGAGAAGATTCATT+CGG 0.543915 1_1:-36133081 None:intergenic
TTAGTACATGATGTAAAGAC+TGG 0.546769 1_1:+36135562 Msa0020630:CDS
CAAGATCACGAGATTTCTCT+AGG 0.549040 1_1:-36134402 None:intergenic
TGGAAATGGAAGAAGCAAGT+TGG 0.549399 1_1:+36132012 Msa0020630:CDS
TGATCTTGAGATTGATTCCG+AGG 0.550181 1_1:+36134417 Msa0020630:CDS
GAATGAATCTTCTCAGCTTG+AGG 0.567388 1_1:+36133083 Msa0020630:CDS
TCTAAAGGACTTGAGATACA+AGG 0.568284 1_1:+36132139 Msa0020630:CDS
AAAGACAAGGTTATGAAGGA+AGG 0.569293 1_1:+36132935 Msa0020630:CDS
AGGATAAAATTGTGAATCTG+TGG 0.570840 1_1:+36135500 Msa0020630:CDS
ATAGCAATTGAACAAGGAGT+TGG 0.573691 1_1:+36135457 Msa0020630:CDS
TGAAACCTTTGAAAAGATGC+CGG 0.574427 1_1:-36132756 None:intergenic
CAGCTCCTACAAATGTACCT+TGG 0.577693 1_1:+36132904 Msa0020630:CDS
CCATAGTTTCCATATTCACA+AGG 0.577993 1_1:-36130055 None:intergenic
TGGTACGTGATTCAGATCTG+TGG 0.584944 1_1:+36132051 Msa0020630:CDS
TAAGGATATCTACAAACAAG+TGG 0.586699 1_1:+36130223 Msa0020630:CDS
AGACGAGATAATCAAATCCT+CGG 0.589811 1_1:-36134434 None:intergenic
TTGGTTATAAAAGCCACTAC+CGG 0.590362 1_1:+36132737 Msa0020630:CDS
CCTACAAATGTACCTTGGAT+GGG 0.603204 1_1:+36132909 Msa0020630:CDS
CTTGGATGGGCCAAAAGACA+AGG 0.605632 1_1:+36132922 Msa0020630:CDS
CAACTTGACAAGAATGTCGT+TGG 0.606247 1_1:-36132090 None:intergenic
GCATTCGTCATATACCTACT+GGG 0.609457 1_1:+36134503 Msa0020630:CDS
AGGAAGAAGAATCCACGTGT+TGG 0.618023 1_1:+36130143 Msa0020630:CDS
TTATGGATAAGAACAAGGTG+TGG 0.623574 1_1:-36135699 None:intergenic
TAGTATAAATGGTATAGTGA+AGG 0.625252 1_1:+36135480 Msa0020630:CDS
CACAAGAACAGTCCAACACG+TGG 0.629378 1_1:-36130155 None:intergenic
CGAGATTTCTCTAGGAACAA+CGG 0.638068 1_1:-36134394 None:intergenic
CAAGTGATAGCAATTGAACA+AGG 0.638703 1_1:+36135451 Msa0020630:CDS
GGAGTTCACCACCTCATAAG+GGG 0.638808 1_1:+36133054 Msa0020630:CDS
AAGGATATCTACAAACAAGT+GGG 0.646261 1_1:+36130224 Msa0020630:CDS
GGATAAAATTGTGAATCTGT+GGG 0.646737 1_1:+36135501 Msa0020630:CDS
GGTACGTGATTCAGATCTGT+GGG 0.649395 1_1:+36132052 Msa0020630:CDS
AACCATTTGGAGCTGAACGA+AGG 0.651020 1_1:-36130119 None:intergenic
GATTGGACAGTTATCCCAGT+AGG 0.654358 1_1:-36134517 None:intergenic
TCGGAGAACCCCTTATGAGG+TGG 0.658387 1_1:-36133062 None:intergenic
ATAATTTATGGATAAGAACA+AGG 0.661959 1_1:-36135704 None:intergenic
AGGTGTTTGATCGAGAATGG+AGG 0.662357 1_1:+36132967 Msa0020630:CDS
TTGTGAATATGGAAACTATG+GGG 0.711630 1_1:+36130057 Msa0020630:exon
TGTGGAAATGAACATCAACT+CGG 0.713768 1_1:-36135681 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATATAAAATGAAAAA+AGG - chr1_1:36132525-36132544 None:intergenic 10.0%
!! ATACAAATTAAAATTGAAAA+TGG + chr1_1:36133414-36133433 Msa0020630:intron 10.0%
!!! TAAGTTAATTTTATTCATTT+TGG - chr1_1:36135172-36135191 None:intergenic 10.0%
!! TAGAAGTGAAAATAAATAAT+AGG - chr1_1:36132207-36132226 None:intergenic 15.0%
!! ATAAGAATTACATTACATTA+CGG + chr1_1:36132409-36132428 Msa0020630:intron 15.0%
!!! TTTGGATTTTTTAGATATAT+TGG - chr1_1:36133308-36133327 None:intergenic 15.0%
!!! AAAATAATGTTGACATTTTT+TGG - chr1_1:36133326-36133345 None:intergenic 15.0%
!! TTGAGTTTGTATTTATATTA+AGG + chr1_1:36134701-36134720 Msa0020630:intron 15.0%
!! CAATAATGTTTGTAATTTAA+GGG + chr1_1:36135145-36135164 Msa0020630:intron 15.0%
!! AATCCTCATTTAAAAAAAAA+AGG - chr1_1:36135335-36135354 None:intergenic 15.0%
!! TTCTTATCCATAAATTATTT+AGG + chr1_1:36135709-36135728 Msa0020630:three_prime_UTR 15.0%
!! ATATCATCCTAAATAATTTA+TGG - chr1_1:36135719-36135738 None:intergenic 15.0%
!!! ACTTAGTATTTTTACTTTTT+TGG + chr1_1:36135739-36135758 Msa0020630:three_prime_UTR 15.0%
!!! ATTATTTTAGTTGTTCAGTT+TGG + chr1_1:36130334-36130353 Msa0020630:intron 20.0%
!! ATTATATATCATAACTACCA+AGG - chr1_1:36131328-36131347 None:intergenic 20.0%
!! ATATATGACATAATATACCA+TGG - chr1_1:36131411-36131430 None:intergenic 20.0%
!!! GTGCTAATTTTTTTTGTTTT+TGG + chr1_1:36131671-36131690 Msa0020630:intron 20.0%
!! TCATGATTTAAGGAATTATT+AGG - chr1_1:36131902-36131921 None:intergenic 20.0%
!! TAAGAATTACATTACATTAC+GGG + chr1_1:36132410-36132429 Msa0020630:intron 20.0%
!! TTCAAAGGTTTCATATATAA+AGG + chr1_1:36132766-36132785 Msa0020630:intron 20.0%
!! TATGAATAAAAAAATAGCAG+CGG - chr1_1:36132804-36132823 None:intergenic 20.0%
!! CAAAGACTAATATGAAATAT+AGG - chr1_1:36132834-36132853 None:intergenic 20.0%
!!! GAAAAATCAGTTTTACAATT+AGG - chr1_1:36133132-36133151 None:intergenic 20.0%
!! AAACAATAGAGAATGTATTA+CGG + chr1_1:36133250-36133269 Msa0020630:intron 20.0%
!!! AACATTATTTTCAGTTTTTC+CGG + chr1_1:36133335-36133354 Msa0020630:intron 20.0%
!!! TGTAATTGTTGTTTAACTTA+TGG - chr1_1:36133603-36133622 None:intergenic 20.0%
!! GAAATTGAATTTACTCAAAA+AGG - chr1_1:36133829-36133848 None:intergenic 20.0%
!! ATACAGTTCAAAACATATAT+AGG + chr1_1:36133875-36133894 Msa0020630:intron 20.0%
!! CTCTTAAAGATAGAAAAATT+GGG - chr1_1:36134086-36134105 None:intergenic 20.0%
!! GAAACCTAAAAATAACTTAA+GGG - chr1_1:36134745-36134764 None:intergenic 20.0%
!!! TAAGTTTTCTTGTTTCATTT+TGG - chr1_1:36135119-36135138 None:intergenic 20.0%
!! AATGAAACAAGAAAACTTAA+AGG + chr1_1:36135120-36135139 Msa0020630:intron 20.0%
!! CCTTAAATTACAAACATTAT+TGG - chr1_1:36135147-36135166 None:intergenic 20.0%
!! CCAATAATGTTTGTAATTTA+AGG + chr1_1:36135144-36135163 Msa0020630:intron 20.0%
!!! AGTCCTTTTTTTTTTAAATG+AGG + chr1_1:36135329-36135348 Msa0020630:intron 20.0%
!!! ACTTTATCTTTTCTTTGTAA+AGG + chr1_1:36135370-36135389 Msa0020630:intron 20.0%
!!! ATCTAAATACTGTTTTAGAT+GGG + chr1_1:36135599-36135618 Msa0020630:CDS 20.0%
!! ATAATTTATGGATAAGAACA+AGG - chr1_1:36135707-36135726 None:intergenic 20.0%
!! ACATTACTGTATTCTTAATT+TGG + chr1_1:36135877-36135896 Msa0020630:three_prime_UTR 20.0%
! AAAAACAAACAAACACTACT+AGG + chr1_1:36130021-36130040 Msa0020630:five_prime_UTR 25.0%
!! CTTATTATTGTTGTTAGCAA+TGG - chr1_1:36130207-36130226 None:intergenic 25.0%
! CATTGCTAACAACAATAATA+AGG + chr1_1:36130205-36130224 Msa0020630:CDS 25.0%
!!! TGTTTTCTCTTTTTTATGTC+TGG + chr1_1:36130305-36130324 Msa0020630:intron 25.0%
! TTACTATATCACTTTCAAAG+TGG + chr1_1:36130502-36130521 Msa0020630:intron 25.0%
! TACTATATCACTTTCAAAGT+GGG + chr1_1:36130503-36130522 Msa0020630:intron 25.0%
! CTTGAAAAGAGTTTATGAAT+AGG + chr1_1:36130628-36130647 Msa0020630:intron 25.0%
!! CACCAACATATTTTTCATAT+CGG - chr1_1:36130928-36130947 None:intergenic 25.0%
! GTCTGATATGAAAAATATGT+TGG + chr1_1:36130988-36131007 Msa0020630:intron 25.0%
! TGATATGAAAAATATGTTGG+TGG + chr1_1:36130991-36131010 Msa0020630:intron 25.0%
! GCTCAAAGTAAAATATTAGT+TGG + chr1_1:36131618-36131637 Msa0020630:intron 25.0%
!!! ATTACACATTGACTTTAATG+TGG - chr1_1:36131813-36131832 None:intergenic 25.0%
! TCAATGTTTGTCATGATTTA+AGG - chr1_1:36131912-36131931 None:intergenic 25.0%
! AAAGTTTAGTTGAAAGTGAT+GGG - chr1_1:36132177-36132196 None:intergenic 25.0%
! AACCATAATTATCTCATACA+GGG - chr1_1:36132310-36132329 None:intergenic 25.0%
! TAACCATAATTATCTCATAC+AGG - chr1_1:36132311-36132330 None:intergenic 25.0%
! AAAATTCCTAGATTTGTGAA+AGG + chr1_1:36132373-36132392 Msa0020630:intron 25.0%
!! GAGATGAATGTTATTGATTA+CGG + chr1_1:36132608-36132627 Msa0020630:CDS 25.0%
!! AGATGAATGTTATTGATTAC+GGG + chr1_1:36132609-36132628 Msa0020630:CDS 25.0%
! TTTGAATTTGAATGTGCTTA+TGG + chr1_1:36133012-36133031 Msa0020630:CDS 25.0%
! TCTATTGTTTATCTTACCAT+TGG - chr1_1:36133240-36133259 None:intergenic 25.0%
! AATTAGAGACAATGTATTTC+CGG - chr1_1:36133357-36133376 None:intergenic 25.0%
! CAAATGTGATGTATTGAAAT+CGG - chr1_1:36133521-36133540 None:intergenic 25.0%
! CAACAATTACAGATCTTAAT+AGG + chr1_1:36133612-36133631 Msa0020630:intron 25.0%
! AGATCTTAATAGGTTAACAT+TGG + chr1_1:36133622-36133641 Msa0020630:intron 25.0%
! GACAAATTCAAACTAATGAT+GGG - chr1_1:36133742-36133761 None:intergenic 25.0%
! TGACAAATTCAAACTAATGA+TGG - chr1_1:36133743-36133762 None:intergenic 25.0%
! ATTGAATTTACTCAAAAAGG+TGG - chr1_1:36133826-36133845 None:intergenic 25.0%
! AACATTTCTTTACAATACGT+TGG + chr1_1:36133903-36133922 Msa0020630:intron 25.0%
! CTACAATGTGTATAATGATA+GGG - chr1_1:36133968-36133987 None:intergenic 25.0%
! TCTACAATGTGTATAATGAT+AGG - chr1_1:36133969-36133988 None:intergenic 25.0%
! CCTCTTAAAGATAGAAAAAT+TGG - chr1_1:36134087-36134106 None:intergenic 25.0%
!! CCAATTTTTCTATCTTTAAG+AGG + chr1_1:36134084-36134103 Msa0020630:intron 25.0%
!! ATGTTCATATGGATGATTTT+TGG + chr1_1:36134220-36134239 Msa0020630:intron 25.0%
!!! CAAGTTTTTTAAGTGTTTGT+AGG + chr1_1:36134278-36134297 Msa0020630:intron 25.0%
! TAGGCTAATGAATTATAGTA+TGG + chr1_1:36134297-36134316 Msa0020630:intron 25.0%
! TATAGTATGGTATAGATGTT+TGG + chr1_1:36134310-36134329 Msa0020630:intron 25.0%
! GGACTTGAATATAGAATAAA+CGG - chr1_1:36134606-36134625 None:intergenic 25.0%
!!! TGTTCCCTTAAGTTATTTTT+AGG + chr1_1:36134738-36134757 Msa0020630:intron 25.0%
! CGAAACCTAAAAATAACTTA+AGG - chr1_1:36134746-36134765 None:intergenic 25.0%
!!! GTTATTTTTAGGTTTCGTTT+TGG + chr1_1:36134749-36134768 Msa0020630:intron 25.0%
!! TTGTATAACGTTTGTTACTT+AGG - chr1_1:36134807-36134826 None:intergenic 25.0%
! GTAACAAACGTTATACAAAT+TGG + chr1_1:36134809-36134828 Msa0020630:intron 25.0%
! ATGAAACGAAAACAACTTAA+GGG - chr1_1:36134836-36134855 None:intergenic 25.0%
! ATTTATAACTTAAGATGCCA+AGG - chr1_1:36134889-36134908 None:intergenic 25.0%
!! CCTTTAAGTAACAAATTTTG+TGG - chr1_1:36135069-36135088 None:intergenic 25.0%
!!! CCACAAAATTTGTTACTTAA+AGG + chr1_1:36135066-36135085 Msa0020630:intron 25.0%
! CTTGTATTAATTTCACTCAT+GGG + chr1_1:36135215-36135234 Msa0020630:intron 25.0%
! TAGTATAAATGGTATAGTGA+AGG + chr1_1:36135480-36135499 Msa0020630:CDS 25.0%
!!! GATCTAAATACTGTTTTAGA+TGG + chr1_1:36135598-36135617 Msa0020630:CDS 25.0%
! AGTAAATCCTAAAAATTTGC+TGG - chr1_1:36135766-36135785 None:intergenic 25.0%
! TAGGATTTACTTCAATTCTT+TGG + chr1_1:36135775-36135794 Msa0020630:three_prime_UTR 25.0%
! TAACAAAAATATGTCAGTAC+AGG - chr1_1:36135842-36135861 None:intergenic 25.0%
AGATAAGGTAACCAAAAAAG+TGG + chr1_1:36129980-36129999 Msa0020630:five_prime_UTR 30.0%
AAAAAAGTGGAGCGAAATTT+CGG + chr1_1:36129993-36130012 Msa0020630:five_prime_UTR 30.0%
! TTTCCATATTCACAAGGTTT+TGG - chr1_1:36130052-36130071 None:intergenic 30.0%
CTTGTGAATATGGAAACTAT+GGG + chr1_1:36130056-36130075 Msa0020630:exon 30.0%
TTGTGAATATGGAAACTATG+GGG + chr1_1:36130057-36130076 Msa0020630:exon 30.0%
TAAGGATATCTACAAACAAG+TGG + chr1_1:36130223-36130242 Msa0020630:CDS 30.0%
AAGGATATCTACAAACAAGT+GGG + chr1_1:36130224-36130243 Msa0020630:CDS 30.0%
! CACAAAAAAAGACAGCATTT+TGG - chr1_1:36130256-36130275 None:intergenic 30.0%
GGTGTTTGATTATGTTTCAT+AGG + chr1_1:36130355-36130374 Msa0020630:intron 30.0%
ATGTTTCATAGGAGTGAAAA+AGG + chr1_1:36130366-36130385 Msa0020630:intron 30.0%
TGTTTCATAGGAGTGAAAAA+GGG + chr1_1:36130367-36130386 Msa0020630:intron 30.0%
AGACTAAGTACTTAAAAGCA+GGG - chr1_1:36130483-36130502 None:intergenic 30.0%
AAGACTAAGTACTTAAAAGC+AGG - chr1_1:36130484-36130503 None:intergenic 30.0%
GAATCATATCTATCCGATTT+GGG - chr1_1:36130609-36130628 None:intergenic 30.0%
AGAATCATATCTATCCGATT+TGG - chr1_1:36130610-36130629 None:intergenic 30.0%
CTAATTCATCCTTACAAAAC+CGG - chr1_1:36130675-36130694 None:intergenic 30.0%
! ACATATTTTTCATATCGGAC+TGG - chr1_1:36130923-36130942 None:intergenic 30.0%
GTCCGATATGAAAAATATGT+TGG + chr1_1:36130923-36130942 Msa0020630:intron 30.0%
CGATATGAAAAATATGTTGG+TGG + chr1_1:36130926-36130945 Msa0020630:intron 30.0%
! TATGAAAAATATGTTGGTGG+AGG + chr1_1:36130929-36130948 Msa0020630:intron 30.0%
GATCTACTTATCTACTTAGA+AGG - chr1_1:36130959-36130978 None:intergenic 30.0%
! TATGAAAAATATGTTGGTGG+AGG + chr1_1:36130929-36130948 Msa0020630:intron 30.0%
GATCTACTTATCTACTTAGA+AGG - chr1_1:36130959-36130978 None:intergenic 30.0%
ATTAATTCTCTGTATGCCTA+CGG + chr1_1:36131219-36131238 Msa0020630:intron 30.0%
TGATATATAATGTGCAGATG+TGG + chr1_1:36131337-36131356 Msa0020630:intron 30.0%
!! CTTGTTAGTTTGAATTTTGC+TGG + chr1_1:36131442-36131461 Msa0020630:intron 30.0%
! TTGAATTTTGCTGGAGAATT+TGG + chr1_1:36131451-36131470 Msa0020630:intron 30.0%
CTTGTTTCATCAATGATCAT+TGG + chr1_1:36131517-36131536 Msa0020630:intron 30.0%
ACAAACATTGAAATATGCTC+AGG + chr1_1:36131921-36131940 Msa0020630:intron 30.0%
! CTTTAGAGAATCAACTACTT+TGG - chr1_1:36132126-36132145 None:intergenic 30.0%
! CAAAGTAGTTGATTCTCTAA+AGG + chr1_1:36132124-36132143 Msa0020630:CDS 30.0%
GAAAGTTTAGTTGAAAGTGA+TGG - chr1_1:36132178-36132197 None:intergenic 30.0%
TTCCCTGTATGAGATAATTA+TGG + chr1_1:36132305-36132324 Msa0020630:intron 30.0%
AAAAAGCCTTTCACAAATCT+AGG - chr1_1:36132382-36132401 None:intergenic 30.0%
AGATATCCAAGCTTCTTAAA+GGG + chr1_1:36132690-36132709 Msa0020630:CDS 30.0%
TTACAATTAGGTAGTACGAA+AGG - chr1_1:36133120-36133139 None:intergenic 30.0%
GTTTATCTTACCATTGGAAA+CGG - chr1_1:36133234-36133253 None:intergenic 30.0%
TAGTTATGATAGAGAGAAGA+TGG - chr1_1:36133385-36133404 None:intergenic 30.0%
! GTTAACATTGGAAAGTTTTC+AGG + chr1_1:36133634-36133653 Msa0020630:intron 30.0%
TTGTGCAATTTCTTGCTAAA+AGG - chr1_1:36133681-36133700 None:intergenic 30.0%
! TAGTCTAGAATTGAATCCTT+AGG + chr1_1:36133710-36133729 Msa0020630:intron 30.0%
!! AAAAGGTGGTTAGTTTGTAA+AGG - chr1_1:36133812-36133831 None:intergenic 30.0%
ATTCAATTTCGTTCAGCTAT+AGG + chr1_1:36133839-36133858 Msa0020630:intron 30.0%
TAATGATAGGGTATGAAATG+TGG - chr1_1:36133956-36133975 None:intergenic 30.0%
TTATACATTACATGCAGGTT+AGG - chr1_1:36133992-36134011 None:intergenic 30.0%
! CCATTTTATACATTACATGC+AGG - chr1_1:36133997-36134016 None:intergenic 30.0%
CCTGCATGTAATGTATAAAA+TGG + chr1_1:36133994-36134013 Msa0020630:intron 30.0%
GCATCTTCACAAATTGTTTA+TGG - chr1_1:36134171-36134190 None:intergenic 30.0%
ATATGACGAATGCAAACTAT+AGG - chr1_1:36134496-36134515 None:intergenic 30.0%
TCAATTTCATTTGCAAGTTC+TGG - chr1_1:36134634-36134653 None:intergenic 30.0%
GAAATAGTAGCAGTCATATA+AGG - chr1_1:36134661-36134680 None:intergenic 30.0%
! ACTGCTACTATTTCCTTTTT+AGG + chr1_1:36134667-36134686 Msa0020630:intron 30.0%
GTGAAACAAAACAGACTTAA+GGG - chr1_1:36134776-36134795 None:intergenic 30.0%
TGTGAAACAAAACAGACTTA+AGG - chr1_1:36134777-36134796 None:intergenic 30.0%
GATGAAACGAAAACAACTTA+AGG - chr1_1:36134837-36134856 None:intergenic 30.0%
ATCTCTTAAGATTTGAGTGT+TGG + chr1_1:36134860-36134879 Msa0020630:intron 30.0%
TAAGAAATATTGGTCCTGAT+AGG + chr1_1:36134915-36134934 Msa0020630:intron 30.0%
! GATTATCTCTGGTGTTAATT+TGG - chr1_1:36134998-36135017 None:intergenic 30.0%
!! AAATTTTGTGGTGTTAGCTT+GGG - chr1_1:36135057-36135076 None:intergenic 30.0%
! ACAAGGCTAAATTACACTTT+TGG - chr1_1:36135200-36135219 None:intergenic 30.0%
CCATGAGTGAAATTAATACA+AGG - chr1_1:36135217-36135236 None:intergenic 30.0%
CCTTGTATTAATTTCACTCA+TGG + chr1_1:36135214-36135233 Msa0020630:intron 30.0%
AAATCCATTGATAGGATCAT+AGG + chr1_1:36135292-36135311 Msa0020630:intron 30.0%
! CTTTCATCTTATTTGCAAAC+TGG - chr1_1:36135405-36135424 None:intergenic 30.0%
AGGATAAAATTGTGAATCTG+TGG + chr1_1:36135500-36135519 Msa0020630:CDS 30.0%
GGATAAAATTGTGAATCTGT+GGG + chr1_1:36135501-36135520 Msa0020630:CDS 30.0%
! ACATCATGTACTAACTTGTA+TGG - chr1_1:36135556-36135575 None:intergenic 30.0%
TTAGTACATGATGTAAAGAC+TGG + chr1_1:36135562-36135581 Msa0020630:CDS 30.0%
!! ACTGTTTTAGATGGGAATAT+TGG + chr1_1:36135607-36135626 Msa0020630:CDS 30.0%
TTAATATGAGCTGCAATAAG+AGG - chr1_1:36135634-36135653 None:intergenic 30.0%
! TTTTGGTCCAGCAAATTTTT+AGG + chr1_1:36135756-36135775 Msa0020630:three_prime_UTR 30.0%
! ACATTTTCCCTTCGAAGATA+AGG + chr1_1:36129965-36129984 Msa0020630:five_prime_UTR 35.0%
TTGGTTACCTTATCTTCGAA+GGG - chr1_1:36129975-36129994 None:intergenic 35.0%
TTTGGTTACCTTATCTTCGA+AGG - chr1_1:36129976-36129995 None:intergenic 35.0%
!!! GAAATTTCGCTCCACTTTTT+TGG - chr1_1:36129994-36130013 None:intergenic 35.0%
AGACCAAAACCTTGTGAATA+TGG + chr1_1:36130046-36130065 Msa0020630:exon 35.0%
CCATAGTTTCCATATTCACA+AGG - chr1_1:36130058-36130077 None:intergenic 35.0%
CCTTGTGAATATGGAAACTA+TGG + chr1_1:36130055-36130074 Msa0020630:exon 35.0%
ATTCTTCTTCCTCAACCATT+TGG - chr1_1:36130135-36130154 None:intergenic 35.0%
!! TGTGTAAGAGCATGTACTTT+TGG + chr1_1:36130272-36130291 Msa0020630:intron 35.0%
ATGTTAACAGAACTTATCCC+CGG + chr1_1:36130527-36130546 Msa0020630:intron 35.0%
!! CGGTTTTGTAAGGATGAATT+AGG + chr1_1:36130673-36130692 Msa0020630:intron 35.0%
! TTTTCATATCAGACTGAGAC+TGG - chr1_1:36130845-36130864 None:intergenic 35.0%
!!! TTTTCATATCGGACTGGTAA+AGG - chr1_1:36130917-36130936 None:intergenic 35.0%
TATCAGAGACTATTCCCTTA+AGG - chr1_1:36131054-36131073 None:intergenic 35.0%
TGCAGATGTGGTATAAACAA+GGG + chr1_1:36131349-36131368 Msa0020630:intron 35.0%
CTTACAGTAAAGAGAAACCA+TGG + chr1_1:36131391-36131410 Msa0020630:intron 35.0%
!!! TGATTTAGTTTTCCCCTTTC+TGG + chr1_1:36131545-36131564 Msa0020630:intron 35.0%
GGTTAGAAATTCACCTCTTA+AGG + chr1_1:36131708-36131727 Msa0020630:intron 35.0%
ACCTCTTAAGGTGATTAAGT+GGG + chr1_1:36131720-36131739 Msa0020630:intron 35.0%
AGAAGTAGTTATCTACAGCT+CGG - chr1_1:36131871-36131890 None:intergenic 35.0%
!! CAGGTTTATTTTCCCTAAGA+AGG + chr1_1:36131940-36131959 Msa0020630:intron 35.0%
! GTCTTCGATTTTCCTTCTTA+GGG - chr1_1:36131955-36131974 None:intergenic 35.0%
! TGTCTTCGATTTTCCTTCTT+AGG - chr1_1:36131956-36131975 None:intergenic 35.0%
TTGGATTAAGCAGGAAGAAA+TGG + chr1_1:36132031-36132050 Msa0020630:CDS 35.0%
TCTAAAGGACTTGAGATACA+AGG + chr1_1:36132139-36132158 Msa0020630:CDS 35.0%
GAGATATCCAAGCTTCTTAA+AGG + chr1_1:36132689-36132708 Msa0020630:CDS 35.0%
TCTTAAAGGGCCATTTGATA+TGG + chr1_1:36132703-36132722 Msa0020630:CDS 35.0%
TTGGTTATAAAAGCCACTAC+CGG + chr1_1:36132737-36132756 Msa0020630:CDS 35.0%
! TGAAACCTTTGAAAAGATGC+CGG - chr1_1:36132759-36132778 None:intergenic 35.0%
! TTTTGCTTGAATCAAGCTCT+GGG + chr1_1:36132876-36132895 Msa0020630:intron 35.0%
! TCCTTCATAACCTTGTCTTT+TGG - chr1_1:36132935-36132954 None:intergenic 35.0%
AAAGACAAGGTTATGAAGGA+AGG + chr1_1:36132935-36132954 Msa0020630:CDS 35.0%
! ATGTGCTTATGGCTATCTTT+TGG + chr1_1:36133023-36133042 Msa0020630:CDS 35.0%
! TGTGCTTATGGCTATCTTTT+GGG + chr1_1:36133024-36133043 Msa0020630:CDS 35.0%
TCAAGCTGAGAAGATTCATT+CGG - chr1_1:36133084-36133103 None:intergenic 35.0%
!!! GTAAACAGGTTAGTTTTCAG+AGG - chr1_1:36133194-36133213 None:intergenic 35.0%
AAGAAACGCATGAAGTAAAC+AGG - chr1_1:36133208-36133227 None:intergenic 35.0%
! GTTTCTTTTTCCGTTTCCAA+TGG + chr1_1:36133221-36133240 Msa0020630:intron 35.0%
TTTGTCATAATCCGACAACA+TGG + chr1_1:36133756-36133775 Msa0020630:intron 35.0%
TGATTTCCCAGACTAATGTT+TGG + chr1_1:36134060-36134079 Msa0020630:intron 35.0%
! ACTTGTAACAGTGTTGTTGA+TGG - chr1_1:36134263-36134282 None:intergenic 35.0%
AGACGAGATAATCAAATCCT+CGG - chr1_1:36134437-36134456 None:intergenic 35.0%
TTCTGTTCTCCATGAATCAA+GGG - chr1_1:36134460-36134479 None:intergenic 35.0%
TTTCTGTTCTCCATGAATCA+AGG - chr1_1:36134461-36134480 None:intergenic 35.0%
TGATTCATGGAGAACAGAAA+AGG + chr1_1:36134461-36134480 Msa0020630:CDS 35.0%
ATATATGCATACCAGAGGAT+TGG - chr1_1:36134537-36134556 None:intergenic 35.0%
!! ACTATTTCCTTTTTAGGCCA+TGG + chr1_1:36134673-36134692 Msa0020630:intron 35.0%
ATACAAACTCAACTACACCA+TGG - chr1_1:36134693-36134712 None:intergenic 35.0%
AAATATTGGTCCTGATAGGA+AGG + chr1_1:36134919-36134938 Msa0020630:intron 35.0%
! ATCTCTGGTGTTAATTTGGT+GGG - chr1_1:36134994-36135013 None:intergenic 35.0%
! TATCTCTGGTGTTAATTTGG+TGG - chr1_1:36134995-36135014 None:intergenic 35.0%
!! CAAATTTTGTGGTGTTAGCT+TGG - chr1_1:36135058-36135077 None:intergenic 35.0%
TAGCTAAGAAGGAAATCATG+AGG - chr1_1:36135262-36135281 None:intergenic 35.0%
! ATCCTATCAATGGATTTGCA+GGG - chr1_1:36135289-36135308 None:intergenic 35.0%
TAGTCCTATGATCCTATCAA+TGG - chr1_1:36135299-36135318 None:intergenic 35.0%
CAAGTGATAGCAATTGAACA+AGG + chr1_1:36135451-36135470 Msa0020630:CDS 35.0%
ATAGCAATTGAACAAGGAGT+TGG + chr1_1:36135457-36135476 Msa0020630:CDS 35.0%
!! CAAGGAGTTGGTAGTATAAA+TGG + chr1_1:36135469-36135488 Msa0020630:CDS 35.0%
ATCTGTGGGAAGAAAAAACT+AGG + chr1_1:36135515-36135534 Msa0020630:CDS 35.0%
TGTGGAAATGAACATCAACT+CGG - chr1_1:36135684-36135703 None:intergenic 35.0%
TTATGGATAAGAACAAGGTG+TGG - chr1_1:36135702-36135721 None:intergenic 35.0%
! TGGTGTCTTTTGACCAAAAA+AGG + chr1_1:36135795-36135814 Msa0020630:three_prime_UTR 35.0%
! GGTGTCTTTTGACCAAAAAA+GGG + chr1_1:36135796-36135815 Msa0020630:three_prime_UTR 35.0%
!!! GACGATTTGATACCCTTTTT+TGG - chr1_1:36135811-36135830 None:intergenic 35.0%
TATGTCAGTACAGGCAAAAT+TGG - chr1_1:36135833-36135852 None:intergenic 35.0%
ATAGGAGTGAAAAAGGGTAG+TGG + chr1_1:36130373-36130392 Msa0020630:intron 40.0%
AAATTAAGACGCCCTTGTGA+CGG + chr1_1:36130414-36130433 Msa0020630:intron 40.0%
! ACCTAACAAACCGGTTCTAT+GGG - chr1_1:36130452-36130471 None:intergenic 40.0%
AATTGGGAGGTTGAGAACAA+AGG - chr1_1:36130557-36130576 None:intergenic 40.0%
!! AGTGTTGGCTGCTAACAATT+GGG - chr1_1:36130573-36130592 None:intergenic 40.0%
AATTGTTAGCAGCCAACACT+CGG + chr1_1:36130573-36130592 Msa0020630:intron 40.0%
! ACATAGGTGTCACGAAAATC+AGG - chr1_1:36130700-36130719 None:intergenic 40.0%
! TGATTTTCGTGACACCTATG+TGG + chr1_1:36130699-36130718 Msa0020630:intron 40.0%
! GATTTTCGTGACACCTATGT+GGG + chr1_1:36130700-36130719 Msa0020630:intron 40.0%
TATCAGACTGAGACTGGTAA+AGG - chr1_1:36130839-36130858 None:intergenic 40.0%
TATACTCCAGTCCTCCTTAT+AGG + chr1_1:36130866-36130885 Msa0020630:intron 40.0%
ATACTCCAGTCCTCCTTATA+GGG + chr1_1:36130867-36130886 Msa0020630:intron 40.0%
AGTAGATCTCACTGACCTTA+AGG + chr1_1:36131036-36131055 Msa0020630:intron 40.0%
GTAGATCTCACTGACCTTAA+GGG + chr1_1:36131037-36131056 Msa0020630:intron 40.0%
GGAATAGTCTCTGATACTTG+CGG + chr1_1:36131058-36131077 Msa0020630:intron 40.0%
GAATAGTCTCTGATACTTGC+GGG + chr1_1:36131059-36131078 Msa0020630:intron 40.0%
ACACGGGTGGAATATCTATA+TGG - chr1_1:36131123-36131142 None:intergenic 40.0%
TCTACCAGTGTCACAAATAG+TGG + chr1_1:36131174-36131193 Msa0020630:intron 40.0%
CTACCAGTGTCACAAATAGT+GGG + chr1_1:36131175-36131194 Msa0020630:intron 40.0%
GAGCAGATCATTTATTCCGT+AGG - chr1_1:36131238-36131257 None:intergenic 40.0%
! TGAAAAGAGCACATGGTAAG+AGG - chr1_1:36131300-36131319 None:intergenic 40.0%
! GGTTATCTGAAAAGAGCACA+TGG - chr1_1:36131307-36131326 None:intergenic 40.0%
! GTGCTCTTTTCAGATAACCT+TGG + chr1_1:36131308-36131327 Msa0020630:intron 40.0%
GTGCAGATGTGGTATAAACA+AGG + chr1_1:36131348-36131367 Msa0020630:intron 40.0%
! TAGGGCATCAAATCCAGAAA+GGG - chr1_1:36131561-36131580 None:intergenic 40.0%
! TTAGGGCATCAAATCCAGAA+AGG - chr1_1:36131562-36131581 None:intergenic 40.0%
TTCTGGATTTGATGCCCTAA+CGG + chr1_1:36131562-36131581 Msa0020630:intron 40.0%
GCTGAATACTCGTGATTGTT+TGG + chr1_1:36131640-36131659 Msa0020630:intron 40.0%
GAGGTGAATTTCTAACCACT+GGG - chr1_1:36131705-36131724 None:intergenic 40.0%
AGAGGTGAATTTCTAACCAC+TGG - chr1_1:36131706-36131725 None:intergenic 40.0%
CACCTCTTAAGGTGATTAAG+TGG + chr1_1:36131719-36131738 Msa0020630:intron 40.0%
TCCCACTTAATCACCTTAAG+AGG - chr1_1:36131724-36131743 None:intergenic 40.0%
GTTGTATGCATCAACAGCTT+TGG + chr1_1:36131992-36132011 Msa0020630:CDS 40.0%
!! TGCATCAACAGCTTTGGAAA+TGG + chr1_1:36131998-36132017 Msa0020630:CDS 40.0%
TGGAAATGGAAGAAGCAAGT+TGG + chr1_1:36132012-36132031 Msa0020630:CDS 40.0%
! AGAAGCAAGTTGGATTAAGC+AGG + chr1_1:36132022-36132041 Msa0020630:CDS 40.0%
GAATGTCGTTGGACTTAGTT+GGG - chr1_1:36132082-36132101 None:intergenic 40.0%
AGAATGTCGTTGGACTTAGT+TGG - chr1_1:36132083-36132102 None:intergenic 40.0%
CAACTTGACAAGAATGTCGT+TGG - chr1_1:36132093-36132112 None:intergenic 40.0%
CAACGACATTCTTGTCAAGT+TGG + chr1_1:36132091-36132110 Msa0020630:CDS 40.0%
CATTACATTACGGGTCTGTT+TGG + chr1_1:36132419-36132438 Msa0020630:intron 40.0%
ACCTGCTTGACATACAACAA+GGG - chr1_1:36132557-36132576 None:intergenic 40.0%
TACCTGCTTGACATACAACA+AGG - chr1_1:36132558-36132577 None:intergenic 40.0%
AATAGACGTGAGCAACATAC+TGG + chr1_1:36132658-36132677 Msa0020630:CDS 40.0%
! AAATGGCCCTTTAAGAAGCT+TGG - chr1_1:36132699-36132718 None:intergenic 40.0%
! CTTTTGCTTGAATCAAGCTC+TGG + chr1_1:36132875-36132894 Msa0020630:intron 40.0%
TCCTACAAATGTACCTTGGA+TGG + chr1_1:36132908-36132927 Msa0020630:CDS 40.0%
CCTACAAATGTACCTTGGAT+GGG + chr1_1:36132909-36132928 Msa0020630:CDS 40.0%
GCCAAAAGACAAGGTTATGA+AGG + chr1_1:36132931-36132950 Msa0020630:CDS 40.0%
ATGAAGGAAGGATTGTTGAC+AGG + chr1_1:36132947-36132966 Msa0020630:CDS 40.0%
! GTGCTTATGGCTATCTTTTG+GGG + chr1_1:36133025-36133044 Msa0020630:CDS 40.0%
! TGCTTATGGCTATCTTTTGG+GGG + chr1_1:36133026-36133045 Msa0020630:CDS 40.0%
GAATGAATCTTCTCAGCTTG+AGG + chr1_1:36133083-36133102 Msa0020630:CDS 40.0%
!! TTCAAACTAATGATGGGCTG+TGG - chr1_1:36133736-36133755 None:intergenic 40.0%
! ATCCGACAACATGGTTCTTT+TGG + chr1_1:36133765-36133784 Msa0020630:intron 40.0%
CACCAAAAGAACCATGTTGT+CGG - chr1_1:36133770-36133789 None:intergenic 40.0%
AACCCATATGGTGAAGAGAA+AGG + chr1_1:36133930-36133949 Msa0020630:intron 40.0%
GGGAAATCATGCTCTTAACA+TGG - chr1_1:36134049-36134068 None:intergenic 40.0%
! ATTGGGCCAAACATTAGTCT+GGG - chr1_1:36134069-36134088 None:intergenic 40.0%
AATTGGGCCAAACATTAGTC+TGG - chr1_1:36134070-36134089 None:intergenic 40.0%
! GGCAGTGTAGTGTTGTTAAA+TGG + chr1_1:36134105-36134124 Msa0020630:intron 40.0%
TGATGGCAGAATATGGAAGA+AGG - chr1_1:36134246-36134265 None:intergenic 40.0%
!! GTGTTGTTGATGGCAGAATA+TGG - chr1_1:36134253-36134272 None:intergenic 40.0%
! CGAGATTTCTCTAGGAACAA+CGG - chr1_1:36134397-36134416 None:intergenic 40.0%
CAAGATCACGAGATTTCTCT+AGG - chr1_1:36134405-36134424 None:intergenic 40.0%
! TGATCTTGAGATTGATTCCG+AGG + chr1_1:36134417-36134436 Msa0020630:CDS 40.0%
TGCATTCGTCATATACCTAC+TGG + chr1_1:36134502-36134521 Msa0020630:CDS 40.0%
GCATTCGTCATATACCTACT+GGG + chr1_1:36134503-36134522 Msa0020630:CDS 40.0%
CACAGATATATGCATACCAG+AGG - chr1_1:36134542-36134561 None:intergenic 40.0%
! CATTTGCAAGTTCTGGCAAA+TGG - chr1_1:36134627-36134646 None:intergenic 40.0%
AACTACACCATGGCCTAAAA+AGG - chr1_1:36134683-36134702 None:intergenic 40.0%
ACACATTAGTCCTTCCTATC+AGG - chr1_1:36134932-36134951 None:intergenic 40.0%
TTCCCTGCAAATCCATTGAT+AGG + chr1_1:36135284-36135303 Msa0020630:intron 40.0%
! GATCCTATCAATGGATTTGC+AGG - chr1_1:36135290-36135309 None:intergenic 40.0%
TGTGGGAAGAAAAAACTAGG+AGG + chr1_1:36135518-36135537 Msa0020630:CDS 40.0%
TTCCTTCGTTCAGCTCCAAA+TGG + chr1_1:36130117-36130136 Msa0020630:CDS 45.0%
! AACCATTTGGAGCTGAACGA+AGG - chr1_1:36130122-36130141 None:intergenic 45.0%
AGGAAGAAGAATCCACGTGT+TGG + chr1_1:36130143-36130162 Msa0020630:CDS 45.0%
! CCTAACAAACCGGTTCTATG+GGG - chr1_1:36130451-36130470 None:intergenic 45.0%
! CACCTAACAAACCGGTTCTA+TGG - chr1_1:36130453-36130472 None:intergenic 45.0%
!! TAGAACCGGTTTGTTAGGTG+AGG + chr1_1:36130453-36130472 Msa0020630:intron 45.0%
!! GAGTGTTGGCTGCTAACAAT+TGG - chr1_1:36130574-36130593 None:intergenic 45.0%
! CGGTGGATTTAGTCCCAAAT+CGG + chr1_1:36130593-36130612 Msa0020630:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG - chr1_1:36130666-36130685 None:intergenic 45.0%
AGCAACTTGACCCTATAAGG+AGG - chr1_1:36130802-36130821 None:intergenic 45.0%
AGCAGCAACTTGACCCTATA+AGG - chr1_1:36130805-36130824 None:intergenic 45.0%
AGCAACTTGACCCTATAAGG+AGG - chr1_1:36130802-36130821 None:intergenic 45.0%
AGCAGCAACTTGACCCTATA+AGG - chr1_1:36130805-36130824 None:intergenic 45.0%
! GTGGGAGCTTCATGTTTCTA+AGG + chr1_1:36131193-36131212 Msa0020630:intron 45.0%
! AGGGCATCAAATCCAGAAAG+GGG - chr1_1:36131560-36131579 None:intergenic 45.0%
CATGACAAAAGCCACCGTTA+GGG - chr1_1:36131579-36131598 None:intergenic 45.0%
! GTGGCTTTTGTCATGCACAA+TGG + chr1_1:36131584-36131603 Msa0020630:intron 45.0%
!! TTTTTGGTCAAGTAGCCCAG+TGG + chr1_1:36131687-36131706 Msa0020630:intron 45.0%
TGAGCTTAGCTCAAGTGGTA+GGG - chr1_1:36131762-36131781 None:intergenic 45.0%
TACCACTTGAGCTAAGCTCA+CGG + chr1_1:36131762-36131781 Msa0020630:intron 45.0%
TGGTACGTGATTCAGATCTG+TGG + chr1_1:36132051-36132070 Msa0020630:CDS 45.0%
GGTACGTGATTCAGATCTGT+GGG + chr1_1:36132052-36132071 Msa0020630:CDS 45.0%
! TCCCTTGTTGTATGTCAAGC+AGG + chr1_1:36132553-36132572 Msa0020630:intron 45.0%
GTTGTATGTCAAGCAGGTAG+AGG + chr1_1:36132559-36132578 Msa0020630:intron 45.0%
AAAGGGCCATTTGATATGGC+AGG + chr1_1:36132707-36132726 Msa0020630:CDS 45.0%
CATGCTCCTGCCATATCAAA+TGG - chr1_1:36132716-36132735 None:intergenic 45.0%
! TGATATGGCAGGAGCATGTT+TGG + chr1_1:36132718-36132737 Msa0020630:CDS 45.0%
! CTTTGAAAAGATGCCGGTAG+TGG - chr1_1:36132753-36132772 None:intergenic 45.0%
! CACTACCGGCATCTTTTCAA+AGG + chr1_1:36132751-36132770 Msa0020630:CDS 45.0%
CAGCTCCTACAAATGTACCT+TGG + chr1_1:36132904-36132923 Msa0020630:CDS 45.0%
CCCATCCAAGGTACATTTGT+AGG - chr1_1:36132912-36132931 None:intergenic 45.0%
GACAGGTGTTTGATCGAGAA+TGG + chr1_1:36132964-36132983 Msa0020630:CDS 45.0%
AGGTGTTTGATCGAGAATGG+AGG + chr1_1:36132967-36132986 Msa0020630:CDS 45.0%
!! GGCTATCTTTTGGGGGAAAA+AGG + chr1_1:36133033-36133052 Msa0020630:CDS 45.0%
AAGGAGTTCACCACCTCATA+AGG + chr1_1:36133052-36133071 Msa0020630:CDS 45.0%
AGGAGTTCACCACCTCATAA+GGG + chr1_1:36133053-36133072 Msa0020630:CDS 45.0%
! CGACAACATGGTTCTTTTGG+TGG + chr1_1:36133768-36133787 Msa0020630:intron 45.0%
TACGTTGGCAGAAACCCATA+TGG + chr1_1:36133918-36133937 Msa0020630:intron 45.0%
GGCCTTTCTCTTCACCATAT+GGG - chr1_1:36133935-36133954 None:intergenic 45.0%
TGGCCTTTCTCTTCACCATA+TGG - chr1_1:36133936-36133955 None:intergenic 45.0%
! GTGTTGTTAAATGGCCGCTA+AGG + chr1_1:36134114-36134133 Msa0020630:intron 45.0%
TTGTTAAATGGCCGCTAAGG+AGG + chr1_1:36134117-36134136 Msa0020630:intron 45.0%
ATTTGTGAAGATGCCTGCCA+TGG + chr1_1:36134177-36134196 Msa0020630:intron 45.0%
CATCCATATGAACATCCCAG+CGG - chr1_1:36134215-36134234 None:intergenic 45.0%
ATCTCGTCTCCCTTGATTCA+TGG + chr1_1:36134448-36134467 Msa0020630:CDS 45.0%
GATTGGACAGTTATCCCAGT+AGG - chr1_1:36134520-36134539 None:intergenic 45.0%
!! GATTTGAGTGTTGGACACCT+TGG + chr1_1:36134869-36134888 Msa0020630:intron 45.0%
GTCTCAGGTTCGATTATCTC+TGG - chr1_1:36135009-36135028 None:intergenic 45.0%
TTGGAGTATGCTCCTTCTCA+AGG - chr1_1:36135031-36135050 None:intergenic 45.0%
! TTGAGAAGGAGCATACTCCA+AGG + chr1_1:36135030-36135049 Msa0020630:intron 45.0%
TGCAGGGAATGTAGCTAAGA+AGG - chr1_1:36135273-36135292 None:intergenic 45.0%
!! ATTAAAAACTAATAATAATT+TGG - chr1_1:36132494-36132513 None:intergenic 5.0%
!! AAATAAATATTAAGAAATAT+TGG + chr1_1:36134905-36134924 Msa0020630:intron 5.0%
CGTTCAGCTCCAAATGGTTG+AGG + chr1_1:36130123-36130142 Msa0020630:CDS 50.0%
CACAAGAACAGTCCAACACG+TGG - chr1_1:36130158-36130177 None:intergenic 50.0%
! GGAGTGAAAAAGGGTAGTGG+AGG + chr1_1:36130376-36130395 Msa0020630:intron 50.0%
TTGTGTAGGCTCCGTCACAA+GGG - chr1_1:36130428-36130447 None:intergenic 50.0%
CCTACACAACCCCATAGAAC+CGG + chr1_1:36130439-36130458 Msa0020630:intron 50.0%
!! CCCCATAGAACCGGTTTGTT+AGG + chr1_1:36130448-36130467 Msa0020630:intron 50.0%
GCAGTCCTCACCTAACAAAC+CGG - chr1_1:36130461-36130480 None:intergenic 50.0%
TTGAGAACAAAGGCGAACCG+GGG - chr1_1:36130547-36130566 None:intergenic 50.0%
GTTGAGAACAAAGGCGAACC+GGG - chr1_1:36130548-36130567 None:intergenic 50.0%
GGTTGAGAACAAAGGCGAAC+CGG - chr1_1:36130549-36130568 None:intergenic 50.0%
GTTGGCTGCTAACAATTGGG+AGG - chr1_1:36130570-36130589 None:intergenic 50.0%
GGACTAAATCCACCGAGTGT+TGG - chr1_1:36130588-36130607 None:intergenic 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG + chr1_1:36130663-36130682 Msa0020630:intron 50.0%
CCTAACAGAGTCACCCACAT+AGG - chr1_1:36130716-36130735 None:intergenic 50.0%
CCTATGTGGGTGACTCTGTT+AGG + chr1_1:36130713-36130732 Msa0020630:intron 50.0%
CTCTGTTAGGATTCGAACCC+AGG + chr1_1:36130726-36130745 Msa0020630:intron 50.0%
CTCCTCCAGTCCTCCTTATA+GGG + chr1_1:36130789-36130808 Msa0020630:intron 50.0%
CTTGACCCTATAAGGAGGAC+TGG - chr1_1:36130797-36130816 None:intergenic 50.0%
CTTGACCCTATAAGGAGGAC+TGG - chr1_1:36130797-36130816 None:intergenic 50.0%
AGCTCCCACTACTTGTGACA+CGG - chr1_1:36131140-36131159 None:intergenic 50.0%
GCTCCCACTATTTGTGACAC+TGG - chr1_1:36131181-36131200 None:intergenic 50.0%
TGGATTTGATGCCCTAACGG+TGG + chr1_1:36131565-36131584 Msa0020630:intron 50.0%
GCATGACAAAAGCCACCGTT+AGG - chr1_1:36131580-36131599 None:intergenic 50.0%
GTGAGCTTAGCTCAAGTGGT+AGG - chr1_1:36131763-36131782 None:intergenic 50.0%
ACCACTTGAGCTAAGCTCAC+GGG + chr1_1:36131763-36131782 Msa0020630:intron 50.0%
! CTTGTCTTTTGGCCCATCCA+AGG - chr1_1:36132924-36132943 None:intergenic 50.0%
CTTGGATGGGCCAAAAGACA+AGG + chr1_1:36132922-36132941 Msa0020630:CDS 50.0%
GGAGTTCACCACCTCATAAG+GGG + chr1_1:36133054-36133073 Msa0020630:CDS 50.0%
CATTCGGAGAACCCCTTATG+AGG - chr1_1:36133068-36133087 None:intergenic 50.0%
!! TAATGATGGGCTGTGGCCTA+AGG - chr1_1:36133729-36133748 None:intergenic 50.0%
AAATGGCCGCTAAGGAGGAA+TGG + chr1_1:36134122-36134141 Msa0020630:intron 50.0%
GGGATAACTGTCCAATCCTC+TGG + chr1_1:36134523-36134542 Msa0020630:CDS 50.0%
TCGAACCTGAGACCTTGAGA+AGG + chr1_1:36135016-36135035 Msa0020630:intron 50.0%
ATGCTCCTTCTCAAGGTCTC+AGG - chr1_1:36135024-36135043 None:intergenic 50.0%
GTTGTGTAGGCTCCGTCACA+AGG - chr1_1:36130429-36130448 None:intergenic 55.0%
CCGGTTCTATGGGGTTGTGT+AGG - chr1_1:36130442-36130461 None:intergenic 55.0%
TGTTAGCAGCCAACACTCGG+TGG + chr1_1:36130576-36130595 Msa0020630:intron 55.0%
ACACTCCTCACCGTACAAGC+CGG + chr1_1:36130653-36130672 Msa0020630:intron 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG - chr1_1:36130661-36130680 None:intergenic 55.0%
GAGGAGGACATGGGAAACCT+GGG - chr1_1:36130746-36130765 None:intergenic 55.0%
ACAGTAGCAGCAAGGAGGAC+TGG - chr1_1:36130768-36130787 None:intergenic 55.0%
CCTATAAGGAGGACTGGAGG+AGG - chr1_1:36130791-36130810 None:intergenic 55.0%
CCTCCTCCAGTCCTCCTTAT+AGG + chr1_1:36130788-36130807 Msa0020630:intron 55.0%
GACCCTATAAGGAGGACTGG+AGG - chr1_1:36130794-36130813 None:intergenic 55.0%
AGTCTCTGATACTTGCGGGC+AGG + chr1_1:36131063-36131082 Msa0020630:intron 55.0%
GTCTCTGATACTTGCGGGCA+GGG + chr1_1:36131064-36131083 Msa0020630:intron 55.0%
ACTTGCGGGCAGGGATACTT+TGG + chr1_1:36131073-36131092 Msa0020630:intron 55.0%
TCCACCCGTGTCACAAGTAG+TGG + chr1_1:36131132-36131151 Msa0020630:intron 55.0%
CCACCCGTGTCACAAGTAGT+GGG + chr1_1:36131133-36131152 Msa0020630:intron 55.0%
GCTCCCACTACTTGTGACAC+GGG - chr1_1:36131139-36131158 None:intergenic 55.0%
CCACTTGAGCTAAGCTCACG+GGG + chr1_1:36131764-36131783 Msa0020630:intron 55.0%
TCGGAGAACCCCTTATGAGG+TGG - chr1_1:36133065-36133084 None:intergenic 55.0%
GTCGCACCATTCCTCCTTAG+CGG - chr1_1:36134131-36134150 None:intergenic 55.0%
TGTGAAGATGCCTGCCATGG+TGG + chr1_1:36134180-36134199 Msa0020630:intron 55.0%
ATGAACATCCCAGCGGCCTA+TGG - chr1_1:36134208-36134227 None:intergenic 55.0%
AGGCCGCTGGGATGTTCATA+TGG + chr1_1:36134209-36134228 Msa0020630:intron 55.0%
! GTGGTGTTAGCTTGGGACCT+TGG - chr1_1:36135050-36135069 None:intergenic 55.0%
GGAGGAGGACATGGGAAACC+TGG - chr1_1:36130747-36130766 None:intergenic 60.0%
GGAGGACTGGAGGAGGACAT+GGG - chr1_1:36130755-36130774 None:intergenic 60.0%
AGGAGGACTGGAGGAGGACA+TGG - chr1_1:36130756-36130775 None:intergenic 60.0%
GTAGCAGCAAGGAGGACTGG+AGG - chr1_1:36130765-36130784 None:intergenic 60.0%
GGAGGACAGTAGCAGCAAGG+AGG - chr1_1:36130773-36130792 None:intergenic 60.0%
GGAGGAGGACAGTAGCAGCA+AGG - chr1_1:36130776-36130795 None:intergenic 60.0%
CCCACTACTTGTGACACGGG+TGG - chr1_1:36131136-36131155 None:intergenic 60.0%
CCCCGTGAGCTTAGCTCAAG+TGG - chr1_1:36131767-36131786 None:intergenic 60.0%
GCAGCAAGGAGGACTGGAGG+AGG - chr1_1:36130762-36130781 None:intergenic 65.0%
!! GCCTGCCATGGTGGTGCCAT+AGG + chr1_1:36134189-36134208 Msa0020630:intron 65.0%
GCCTATGGCACCACCATGGC+AGG - chr1_1:36134193-36134212 None:intergenic 65.0%
AGCGGCCTATGGCACCACCA+TGG - chr1_1:36134197-36134216 None:intergenic 65.0%
!! ATGGTGGTGCCATAGGCCGC+TGG + chr1_1:36134196-36134215 Msa0020630:intron 65.0%
!! TGGTGGTGCCATAGGCCGCT+GGG + chr1_1:36134197-36134216 Msa0020630:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 36129953 36135923 36129953 ID=Msa0020630;Name=Msa0020630
chr1_1 mRNA 36129953 36135923 36129953 ID=Msa0020630-mRNA-1;Parent=Msa0020630;Name=Msa0020630-mRNA-1;_AED=0.23;_eAED=0.23;_QI=112|1|1|1|1|1|6|257|420
chr1_1 exon 36129953 36130245 36129953 ID=Msa0020630-mRNA-1:exon:11419;Parent=Msa0020630-mRNA-1
chr1_1 exon 36131943 36132160 36131943 ID=Msa0020630-mRNA-1:exon:11420;Parent=Msa0020630-mRNA-1
chr1_1 exon 36132575 36132772 36132575 ID=Msa0020630-mRNA-1:exon:11421;Parent=Msa0020630-mRNA-1
chr1_1 exon 36132892 36133104 36132892 ID=Msa0020630-mRNA-1:exon:11422;Parent=Msa0020630-mRNA-1
chr1_1 exon 36134367 36134544 36134367 ID=Msa0020630-mRNA-1:exon:11423;Parent=Msa0020630-mRNA-1
chr1_1 exon 36135392 36135923 36135392 ID=Msa0020630-mRNA-1:exon:11424;Parent=Msa0020630-mRNA-1
chr1_1 five_prime_UTR 36129953 36130064 36129953 ID=Msa0020630-mRNA-1:five_prime_utr;Parent=Msa0020630-mRNA-1
chr1_1 CDS 36130065 36130245 36130065 ID=Msa0020630-mRNA-1:cds;Parent=Msa0020630-mRNA-1
chr1_1 CDS 36131943 36132160 36131943 ID=Msa0020630-mRNA-1:cds;Parent=Msa0020630-mRNA-1
chr1_1 CDS 36132575 36132772 36132575 ID=Msa0020630-mRNA-1:cds;Parent=Msa0020630-mRNA-1
chr1_1 CDS 36132892 36133104 36132892 ID=Msa0020630-mRNA-1:cds;Parent=Msa0020630-mRNA-1
chr1_1 CDS 36134367 36134544 36134367 ID=Msa0020630-mRNA-1:cds;Parent=Msa0020630-mRNA-1
chr1_1 CDS 36135392 36135666 36135392 ID=Msa0020630-mRNA-1:cds;Parent=Msa0020630-mRNA-1
chr1_1 three_prime_UTR 36135667 36135923 36135667 ID=Msa0020630-mRNA-1:three_prime_utr;Parent=Msa0020630-mRNA-1
Gene Sequence

>Msa0020630

ATGGAAACTATGGGGTCTGAAAGTTGTTGTGCAAGAACTGTTCATGATATTGTTCCTTCGTTCAGCTCCAAATGGTTGAGGAAGAAGAATCCACGTGTTGGACTGTTCTTGTGTTCTTTCAGAGTTAGAGCTTGTCAATCCATTGCTAACAACAATAATAAGGATATCTACAAACAAGTGGGTTTATTTTCCCTAAGAAGGAAAATCGAAGACACAGTTATTCGCGCTGAGTTGTATGCATCAACAGCTTTGGAAATGGAAGAAGCAAGTTGGATTAAGCAGGAAGAAATGGTACGTGATTCAGATCTGTGGGATGACCCAACTAAGTCCAACGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGTAGTTGATTCTCTAAAGGACTTGAGATACAAGGTAGAGGAAGCACAGCTGATCAAGCAGTTAGCTGAGATGAATGTTATTGATTACGGGCTCTATAAACAAGCATATGATGCATCAATAGACGTGAGCAACATACTGGATCAGTATGAGATATCCAAGCTTCTTAAAGGGCCATTTGATATGGCAGGAGCATGTTTGGTTATAAAAGCCACTACCGGCATCTTTTCAAAGCTCTGGGCAGAACAGCTCCTACAAATGTACCTTGGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAGGTGTTTGATCGAGAATGGAGGAATCAATTTAGCAACTATAGAGTTTGAATTTGAATGTGCTTATGGCTATCTTTTGGGGGAAAAAGGAGTTCACCACCTCATAAGGGGTTCTCCGAATGAATCTTCTCAGCTTGAGACTAGCACTGCAACTGTTGATGTTATTCCGTTGTTCCTAGAGAAATCTCGTGATCTTGAGATTGATTCCGAGGATTTGATTATCTCGTCTCCCTTGATTCATGGAGAACAGAAAAGGCAGACTCAGCCTATAGTTTGCATTCGTCATATACCTACTGGGATAACTGTCCAATCCTCTGGTGAGAGAAGCCAGTTTGCAAATAAGATGAAAGCACTAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAATTGAACAAGGAGTTGGTAGTATAAATGGTATAGTGAAGGATAAAATTGTGAATCTGTGGGAAGAAAAAACTAGGAGGTATGTATCTCATCCATACAAGTTAGTACATGATGTAAAGACTGGCATTGAGATGTCAGATCTAAATACTGTTTTAGATGGGAATATTGGACCTCTTATTGCAGCTCATATTAATACTAGAGAGTAA

Protein sequence

>Msa0020630

METMGSESCCARTVHDIVPSFSSKWLRKKNPRVGLFLCSFRVRACQSIANNNNKDIYKQVGLFSLRRKIEDTVIRAELYASTALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAQLIKQLAEMNVIDYGLYKQAYDASIDVSNILDQYEISKLLKGPFDMAGACLVIKATTGIFSKLWAEQLLQMYLGWAKRQGYEGRIVDRCLIENGGINLATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTATVDVIPLFLEKSRDLEIDSEDLIISSPLIHGEQKRQTQPIVCIRHIPTGITVQSSGERSQFANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKTRRYVSHPYKLVHDVKTGIEMSDLNTVLDGNIGPLIAAHINTRE*