AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159750 MtrunA17_Chr1g0172361 95.714 420 18 0 1 420 1 420 0.0 834
Msa0159750 MtrunA17_Chr7g0249581 39.779 362 207 6 62 416 100 457 4.21e-73 236
Msa0159750 MtrunA17_Chr7g0271771 32.000 325 207 8 102 417 146 465 1.87e-40 150
Msa0159750 MtrunA17_Chr7g0270701 29.730 222 150 3 189 406 164 383 2.49e-14 74.3
Msa0159750 MtrunA17_Chr7g0268791 25.840 387 240 13 46 408 25 388 4.19e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159750 AT3G57190.1 53.769 398 172 6 25 419 12 400 3.17e-143 414
Msa0159750 AT5G36170.1 38.462 377 225 5 47 416 66 442 1.63e-76 245
Msa0159750 AT5G36170.2 38.462 377 225 5 47 416 65 441 1.71e-76 245
Msa0159750 AT5G36170.4 32.803 314 192 6 47 341 65 378 2.52e-44 159
Msa0159750 AT5G36170.3 32.803 314 192 6 47 341 66 379 2.63e-44 159
Msa0159750 AT1G56350.1 33.231 325 207 7 101 418 152 473 2.29e-42 155
Msa0159750 AT3G62910.1 24.789 355 247 10 73 414 50 397 4.21e-15 77.0
Msa0159750 AT2G47020.4 29.004 231 157 4 189 414 103 331 4.62e-12 67.4
Msa0159750 AT2G47020.1 29.004 231 157 4 189 414 168 396 7.86e-12 67.0
Msa0159750 AT2G47020.3 32.121 165 106 3 189 349 168 330 5.39e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCATCCTAAATAATTTA+TGG 0.193640 1_4:-31038571 None:intergenic
ACATTACTGTATTCTTAATT+TGG 0.213787 1_4:+31038732 Msa0159750:three_prime_UTR
CCTTGTGAATATGGAAACTA+TGG 0.221201 1_4:+31032976 Msa0159750:exon
TTCTTATCCATAAATTATTT+AGG 0.222589 1_4:+31038564 Msa0159750:three_prime_UTR
CAAGGAGTTGGTAGTATAAA+TGG 0.246573 1_4:+31038324 Msa0159750:CDS
TAGGATTTACTTCAATTCTT+TGG 0.260548 1_4:+31038630 Msa0159750:three_prime_UTR
GAGATATCCAAGCTTCTTAA+AGG 0.276860 1_4:+31035545 Msa0159750:CDS
ATGTGCTTATGGCTATCTTT+TGG 0.289466 1_4:+31035879 Msa0159750:CDS
AGACCAAAACCTTGTGAATA+TGG 0.297820 1_4:+31032967 Msa0159750:exon
TCCTTCATAACCTTGTCTTT+TGG 0.304609 1_4:-31035788 None:intergenic
TTTCCATATTCACAAGGTTT+TGG 0.305814 1_4:-31032970 None:intergenic
ATCTCGTCTCCCTTGATTCA+TGG 0.321150 1_4:+31037304 Msa0159750:CDS
CATTGCTAACAACAATAATA+AGG 0.325730 1_4:+31033126 Msa0159750:CDS
ATTCTTCTTCCTCAACCATT+TGG 0.327468 1_4:-31033053 None:intergenic
TATGTCAGTACAGGCAAAAT+TGG 0.335794 1_4:-31038685 None:intergenic
GAGATGAATGTTATTGATTA+CGG 0.351605 1_4:+31035464 Msa0159750:CDS
TTTGAATTTGAATGTGCTTA+TGG 0.354922 1_4:+31035868 Msa0159750:CDS
CTTTCATCTTATTTGCAAAC+TGG 0.356322 1_4:-31038257 None:intergenic
TGATATGGCAGGAGCATGTT+TGG 0.368531 1_4:+31035574 Msa0159750:CDS
TCTTAAAGGGCCATTTGATA+TGG 0.373189 1_4:+31035559 Msa0159750:CDS
AGATGAATGTTATTGATTAC+GGG 0.377034 1_4:+31035465 Msa0159750:CDS
TGCATTCGTCATATACCTAC+TGG 0.380498 1_4:+31037358 Msa0159750:CDS
ACATCATGTACTAACTTGTA+TGG 0.392795 1_4:-31038408 None:intergenic
CCCATCCAAGGTACATTTGT+AGG 0.393835 1_4:-31035765 None:intergenic
AAGGAGTTCACCACCTCATA+AGG 0.397909 1_4:+31035908 Msa0159750:CDS
GTTGTATGCATCAACAGCTT+TGG 0.415883 1_4:+31034848 Msa0159750:CDS
TGCATCAACAGCTTTGGAAA+TGG 0.426629 1_4:+31034854 Msa0159750:CDS
AAATGGCCCTTTAAGAAGCT+TGG 0.428987 1_4:-31035552 None:intergenic
TTGGATTAAGCAGGAAGAAA+TGG 0.429971 1_4:+31034887 Msa0159750:CDS
CTTATTATTGTTGTTAGCAA+TGG 0.431641 1_4:-31033125 None:intergenic
TTTCTGTTCTCCATGAATCA+AGG 0.438309 1_4:-31037314 None:intergenic
CATTCGGAGAACCCCTTATG+AGG 0.442926 1_4:-31035921 None:intergenic
TTTGGTTACCTTATCTTCAA+AGG 0.448785 1_4:-31032894 None:intergenic
AATAGACGTGAGCAACATAC+TGG 0.450203 1_4:+31035514 Msa0159750:CDS
TTAATATGAGCTGCAATAAG+AGG 0.455039 1_4:-31038486 None:intergenic
CTTTAGAGAATCAACTACTT+TGG 0.455693 1_4:-31034979 None:intergenic
AGGAGTTCACCACCTCATAA+GGG 0.456040 1_4:+31035909 Msa0159750:CDS
AGATATCCAAGCTTCTTAAA+GGG 0.458376 1_4:+31035546 Msa0159750:CDS
TTGGTTACCTTATCTTCAAA+GGG 0.467344 1_4:-31032893 None:intergenic
GAATGTCGTTGGACTTAGTT+GGG 0.470599 1_4:-31034935 None:intergenic
TCCTACAAATGTACCTTGGA+TGG 0.475306 1_4:+31035764 Msa0159750:CDS
TTCCTTCGTTCAGCTCCAAA+TGG 0.477652 1_4:+31033038 Msa0159750:CDS
ATATGACGAATGCAAACTAT+AGG 0.480794 1_4:-31037349 None:intergenic
CTTTGAAAAGATGCCGGTAG+TGG 0.481878 1_4:-31035606 None:intergenic
TTCTGTTCTCCATGAATCAA+GGG 0.482036 1_4:-31037313 None:intergenic
AGAATGTCGTTGGACTTAGT+TGG 0.486932 1_4:-31034936 None:intergenic
AGAAGCAAGTTGGATTAAGC+AGG 0.495038 1_4:+31034878 Msa0159750:CDS
GACAGGTGTTTGATCGAGAA+TGG 0.495149 1_4:+31035820 Msa0159750:CDS
CAAAGTAGTTGATTCTCTAA+AGG 0.495997 1_4:+31034980 Msa0159750:CDS
CGTTCAGCTCCAAATGGTTG+AGG 0.512689 1_4:+31033044 Msa0159750:CDS
CATGCTCCTGCCATATCAAA+TGG 0.512944 1_4:-31035569 None:intergenic
AAAGGGCCATTTGATATGGC+AGG 0.516727 1_4:+31035563 Msa0159750:CDS
GGGATAACTGTCCAATCCTC+TGG 0.523138 1_4:+31037379 Msa0159750:CDS
ATGAAGGAAGGATTGTTGAC+AGG 0.525711 1_4:+31035803 Msa0159750:CDS
ATATATGCATACCAGAGGAT+TGG 0.533561 1_4:-31037390 None:intergenic
GCCAAAAGACAAGGTTATGA+AGG 0.538834 1_4:+31035787 Msa0159750:CDS
TGATTCATGGAGAACAGAAA+AGG 0.539765 1_4:+31037317 Msa0159750:CDS
CAACGACATTCTTGTCAAGT+TGG 0.539891 1_4:+31034947 Msa0159750:CDS
CTTGTGAATATGGAAACTAT+GGG 0.542488 1_4:+31032977 Msa0159750:exon
TCAAGCTGAGAAGATTCATT+CGG 0.543915 1_4:-31035937 None:intergenic
TTAGTACATGATGTAAAGAC+TGG 0.546769 1_4:+31038417 Msa0159750:CDS
CAAGATCACGAGATTTCTCT+AGG 0.549040 1_4:-31037258 None:intergenic
TGGAAATGGAAGAAGCAAGT+TGG 0.549399 1_4:+31034868 Msa0159750:CDS
TGATCTTGAGATTGATTCCG+AGG 0.550181 1_4:+31037273 Msa0159750:CDS
GAATGAATCTTCTCAGCTTG+AGG 0.567388 1_4:+31035939 Msa0159750:CDS
TCTAAAGGACTTGAGATACA+AGG 0.568284 1_4:+31034995 Msa0159750:CDS
AAAGACAAGGTTATGAAGGA+AGG 0.569293 1_4:+31035791 Msa0159750:CDS
AGGATAAAATTGTGAATCTG+TGG 0.570840 1_4:+31038355 Msa0159750:CDS
ATAGCAATTGAACAAGGAGT+TGG 0.573691 1_4:+31038312 Msa0159750:CDS
TGAAACCTTTGAAAAGATGC+CGG 0.574427 1_4:-31035612 None:intergenic
CAGCTCCTACAAATGTACCT+TGG 0.577693 1_4:+31035760 Msa0159750:CDS
CCATAGTTTCCATATTCACA+AGG 0.577993 1_4:-31032976 None:intergenic
TGGTACGTGATTCAGATCTG+TGG 0.584944 1_4:+31034907 Msa0159750:CDS
TAAGGATATCTACAAACAAG+TGG 0.586699 1_4:+31033144 Msa0159750:CDS
AGACGAGATAATCAAATCCT+CGG 0.589811 1_4:-31037290 None:intergenic
TTGGTTATAAAAGCCACTAC+CGG 0.590362 1_4:+31035593 Msa0159750:CDS
CCTACAAATGTACCTTGGAT+GGG 0.603204 1_4:+31035765 Msa0159750:CDS
CTTGGATGGGCCAAAAGACA+AGG 0.605632 1_4:+31035778 Msa0159750:CDS
CAACTTGACAAGAATGTCGT+TGG 0.606247 1_4:-31034946 None:intergenic
GCATTCGTCATATACCTACT+GGG 0.609457 1_4:+31037359 Msa0159750:CDS
AGGAAGAAGAATCCACGTGT+TGG 0.618023 1_4:+31033064 Msa0159750:CDS
TTATGGATAAGAACAAGGTG+TGG 0.623574 1_4:-31038554 None:intergenic
TAGTATAAATGGTATAGTGA+AGG 0.625252 1_4:+31038335 Msa0159750:CDS
CACAAGAACAGTCCAACACG+TGG 0.629378 1_4:-31033076 None:intergenic
CGAGATTTCTCTAGGAACAA+CGG 0.638068 1_4:-31037250 None:intergenic
CAAGTGATAGCAATTGAACA+AGG 0.638703 1_4:+31038306 Msa0159750:CDS
GGAGTTCACCACCTCATAAG+GGG 0.638808 1_4:+31035910 Msa0159750:CDS
AAGGATATCTACAAACAAGT+GGG 0.646261 1_4:+31033145 Msa0159750:CDS
GGATAAAATTGTGAATCTGT+GGG 0.646737 1_4:+31038356 Msa0159750:CDS
GGTACGTGATTCAGATCTGT+GGG 0.649395 1_4:+31034908 Msa0159750:CDS
AACCATTTGGAGCTGAACGA+AGG 0.651020 1_4:-31033040 None:intergenic
GATTGGACAGTTATCCCAGT+AGG 0.654358 1_4:-31037373 None:intergenic
TCGGAGAACCCCTTATGAGG+TGG 0.658387 1_4:-31035918 None:intergenic
ATAATTTATGGATAAGAACA+AGG 0.661959 1_4:-31038559 None:intergenic
AGGTGTTTGATCGAGAATGG+AGG 0.662357 1_4:+31035823 Msa0159750:CDS
TTGTGAATATGGAAACTATG+GGG 0.711630 1_4:+31032978 Msa0159750:exon
TGTGGAAATGAACATCAACT+CGG 0.713768 1_4:-31038536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATATAAAATGAAAAA+AGG - chr1_4:31035381-31035400 None:intergenic 10.0%
!!! TAAGTTAATTTTATTCATTT+TGG - chr1_4:31038028-31038047 None:intergenic 10.0%
!! TAGAAGTGAAAATAAATAAT+AGG - chr1_4:31035063-31035082 None:intergenic 15.0%
!! ATAAGAATTACATTACATTA+CGG + chr1_4:31035265-31035284 Msa0159750:intron 15.0%
!!! TTTGGATTTTTTAGATATAT+TGG - chr1_4:31036164-31036183 None:intergenic 15.0%
!!! AAAATAATGTTGACATTTTT+TGG - chr1_4:31036182-31036201 None:intergenic 15.0%
!! TTGAGTTTGTATTTATATTA+AGG + chr1_4:31037557-31037576 Msa0159750:intron 15.0%
!! CAATAATGTTTGTAATTTAA+GGG + chr1_4:31038001-31038020 Msa0159750:intron 15.0%
!! AAATCCTCATTTAAAAAAAA+AGG - chr1_4:31038191-31038210 None:intergenic 15.0%
!!! ACTTTTTTTTTTCTTTGTAA+AGG + chr1_4:31038225-31038244 Msa0159750:intron 15.0%
!! TTCTTATCCATAAATTATTT+AGG + chr1_4:31038564-31038583 Msa0159750:three_prime_UTR 15.0%
!! ATATCATCCTAAATAATTTA+TGG - chr1_4:31038574-31038593 None:intergenic 15.0%
!!! ACTTAGTATTTTTACTTTTT+TGG + chr1_4:31038594-31038613 Msa0159750:three_prime_UTR 15.0%
!!! ATTATTTTAGTTGTTCAGTT+TGG + chr1_4:31033255-31033274 Msa0159750:intron 20.0%
!! ATTATATATCATAACTACCA+AGG - chr1_4:31034184-31034203 None:intergenic 20.0%
!! TCATGATTTAAGGAATTATT+AGG - chr1_4:31034758-31034777 None:intergenic 20.0%
!! TAAGAATTACATTACATTAC+GGG + chr1_4:31035266-31035285 Msa0159750:intron 20.0%
!! TTCAAAGGTTTCATATATAA+AGG + chr1_4:31035622-31035641 Msa0159750:intron 20.0%
!! TATGAATAAAAAAATAGCAG+CGG - chr1_4:31035660-31035679 None:intergenic 20.0%
!! CAAAGACTAATATGAAATAT+AGG - chr1_4:31035690-31035709 None:intergenic 20.0%
!!! GAAAAATCAGTTTTACAATT+AGG - chr1_4:31035988-31036007 None:intergenic 20.0%
!! AAACAATAGAGAATGTATTA+CGG + chr1_4:31036106-31036125 Msa0159750:intron 20.0%
!!! AACATTATTTTCAGTTTTTC+CGG + chr1_4:31036191-31036210 Msa0159750:intron 20.0%
!!! TGTAATTGTTGTTTAACTTA+TGG - chr1_4:31036459-31036478 None:intergenic 20.0%
!! GAAATTGAATTTACTCAAAA+AGG - chr1_4:31036685-31036704 None:intergenic 20.0%
!! ATACAGTTCAAAACATATAT+AGG + chr1_4:31036731-31036750 Msa0159750:intron 20.0%
!! CTCTTAAAGATAGAAAAATT+GGG - chr1_4:31036942-31036961 None:intergenic 20.0%
!! GAAACCTAAAAATAACTTAA+GGG - chr1_4:31037601-31037620 None:intergenic 20.0%
!!! TAAGTTTTCTTGTTTCATTT+TGG - chr1_4:31037975-31037994 None:intergenic 20.0%
!! AATGAAACAAGAAAACTTAA+AGG + chr1_4:31037976-31037995 Msa0159750:intron 20.0%
!! CCTTAAATTACAAACATTAT+TGG - chr1_4:31038003-31038022 None:intergenic 20.0%
!! CCAATAATGTTTGTAATTTA+AGG + chr1_4:31038000-31038019 Msa0159750:intron 20.0%
!!! AAGTCCTTTTTTTTTAAATG+AGG + chr1_4:31038184-31038203 Msa0159750:intron 20.0%
!!! ATCTAAATACTGTTTTAGAT+GGG + chr1_4:31038454-31038473 Msa0159750:CDS 20.0%
!! ATAATTTATGGATAAGAACA+AGG - chr1_4:31038562-31038581 None:intergenic 20.0%
!! ACATTACTGTATTCTTAATT+TGG + chr1_4:31038732-31038751 Msa0159750:three_prime_UTR 20.0%
! AAAAACAAACAAACACTACT+AGG + chr1_4:31032942-31032961 Msa0159750:five_prime_UTR 25.0%
!! CTTATTATTGTTGTTAGCAA+TGG - chr1_4:31033128-31033147 None:intergenic 25.0%
! CATTGCTAACAACAATAATA+AGG + chr1_4:31033126-31033145 Msa0159750:CDS 25.0%
!!! TGTTTTCTCTTTTTTATGTC+TGG + chr1_4:31033226-31033245 Msa0159750:intron 25.0%
! AGACTAAGTACTTAAAAGTA+GGG - chr1_4:31033404-31033423 None:intergenic 25.0%
! AAGACTAAGTACTTAAAAGT+AGG - chr1_4:31033405-31033424 None:intergenic 25.0%
! TTACTATATCACTTTCAAAG+TGG + chr1_4:31033423-31033442 Msa0159750:intron 25.0%
! TACTATATCACTTTCAAAGT+GGG + chr1_4:31033424-31033443 Msa0159750:intron 25.0%
! CTTGAAAAGAGTTTATGAAT+AGG + chr1_4:31033549-31033568 Msa0159750:intron 25.0%
!! ACATATTTTTCATATCAGAC+TGG - chr1_4:31033844-31033863 None:intergenic 25.0%
! GTCTGATATGAAAAATATGT+TGG + chr1_4:31033844-31033863 Msa0159750:intron 25.0%
! TGATATGAAAAATATGTTGG+TGG + chr1_4:31033847-31033866 Msa0159750:intron 25.0%
! ATAGATGACATAATATACCA+TGG - chr1_4:31034267-31034286 None:intergenic 25.0%
! GCTCAAAGTAAAATATTAGT+TGG + chr1_4:31034474-31034493 Msa0159750:intron 25.0%
!!! GTGCTAATTTTTTTTGTGTT+TGG + chr1_4:31034527-31034546 Msa0159750:intron 25.0%
!!! ATTACACATTGACTTTAATG+TGG - chr1_4:31034669-31034688 None:intergenic 25.0%
! TCAATGTTTGTCATGATTTA+AGG - chr1_4:31034768-31034787 None:intergenic 25.0%
! AAAGTTTAGTTGAAAGTGAT+GGG - chr1_4:31035033-31035052 None:intergenic 25.0%
! AACCATAATTATCTCATACA+GGG - chr1_4:31035166-31035185 None:intergenic 25.0%
! TAACCATAATTATCTCATAC+AGG - chr1_4:31035167-31035186 None:intergenic 25.0%
! AAAATTCCTAGATTTGTGAA+AGG + chr1_4:31035229-31035248 Msa0159750:intron 25.0%
!! GAGATGAATGTTATTGATTA+CGG + chr1_4:31035464-31035483 Msa0159750:CDS 25.0%
!! AGATGAATGTTATTGATTAC+GGG + chr1_4:31035465-31035484 Msa0159750:CDS 25.0%
! TTTGAATTTGAATGTGCTTA+TGG + chr1_4:31035868-31035887 Msa0159750:CDS 25.0%
! TCTATTGTTTATCTTACCAT+TGG - chr1_4:31036096-31036115 None:intergenic 25.0%
! AATTAGAGACAATGTATTTC+CGG - chr1_4:31036213-31036232 None:intergenic 25.0%
! CAAATGTGATGTATTGAAAT+CGG - chr1_4:31036377-31036396 None:intergenic 25.0%
! CAACAATTACAGATCTTAAT+AGG + chr1_4:31036468-31036487 Msa0159750:intron 25.0%
! AGATCTTAATAGGTTAACAT+TGG + chr1_4:31036478-31036497 Msa0159750:intron 25.0%
! GACAAATTCAAACTAATGAT+GGG - chr1_4:31036598-31036617 None:intergenic 25.0%
! TGACAAATTCAAACTAATGA+TGG - chr1_4:31036599-31036618 None:intergenic 25.0%
! ATTGAATTTACTCAAAAAGG+TGG - chr1_4:31036682-31036701 None:intergenic 25.0%
! AACATTTCTTTACAATACGT+TGG + chr1_4:31036759-31036778 Msa0159750:intron 25.0%
! CTACAATGTGTATAATGATA+GGG - chr1_4:31036824-31036843 None:intergenic 25.0%
! TCTACAATGTGTATAATGAT+AGG - chr1_4:31036825-31036844 None:intergenic 25.0%
! CCTCTTAAAGATAGAAAAAT+TGG - chr1_4:31036943-31036962 None:intergenic 25.0%
!! CCAATTTTTCTATCTTTAAG+AGG + chr1_4:31036940-31036959 Msa0159750:intron 25.0%
!! ATGTTCATATGGATGATTTT+TGG + chr1_4:31037076-31037095 Msa0159750:intron 25.0%
!!! CAAGTTTTTTAAGTGTTTGT+AGG + chr1_4:31037134-31037153 Msa0159750:intron 25.0%
! TAGGCTAATGAATTATAGTA+TGG + chr1_4:31037153-31037172 Msa0159750:intron 25.0%
! TATAGTATGGTATAGATGTT+TGG + chr1_4:31037166-31037185 Msa0159750:intron 25.0%
! GGACTTGAATATAGAATAAA+CGG - chr1_4:31037462-31037481 None:intergenic 25.0%
!!! TGTTCCCTTAAGTTATTTTT+AGG + chr1_4:31037594-31037613 Msa0159750:intron 25.0%
! CGAAACCTAAAAATAACTTA+AGG - chr1_4:31037602-31037621 None:intergenic 25.0%
!!! GTTATTTTTAGGTTTCGTTT+TGG + chr1_4:31037605-31037624 Msa0159750:intron 25.0%
!! TTGTATAACGTTTGTTACTT+AGG - chr1_4:31037663-31037682 None:intergenic 25.0%
! GTAACAAACGTTATACAAAT+TGG + chr1_4:31037665-31037684 Msa0159750:intron 25.0%
! ATGAAACGAAAACAACTTAA+GGG - chr1_4:31037692-31037711 None:intergenic 25.0%
!! CCTTTAAGTAACAAATTTTG+TGG - chr1_4:31037925-31037944 None:intergenic 25.0%
!!! CCACAAAATTTGTTACTTAA+AGG + chr1_4:31037922-31037941 Msa0159750:intron 25.0%
! CTTGTATTAATTTCACTCAT+GGG + chr1_4:31038071-31038090 Msa0159750:intron 25.0%
! TAGTATAAATGGTATAGTGA+AGG + chr1_4:31038335-31038354 Msa0159750:CDS 25.0%
!!! GATCTAAATACTGTTTTAGA+TGG + chr1_4:31038453-31038472 Msa0159750:CDS 25.0%
! AGTAAATCCTAAAAATTTGC+TGG - chr1_4:31038621-31038640 None:intergenic 25.0%
! TAGGATTTACTTCAATTCTT+TGG + chr1_4:31038630-31038649 Msa0159750:three_prime_UTR 25.0%
! TAACAAAAATATGTCAGTAC+AGG - chr1_4:31038697-31038716 None:intergenic 25.0%
!! ACATTTTCCCTTTGAAGATA+AGG + chr1_4:31032886-31032905 Msa0159750:five_prime_UTR 30.0%
TTGGTTACCTTATCTTCAAA+GGG - chr1_4:31032896-31032915 None:intergenic 30.0%
TTTGGTTACCTTATCTTCAA+AGG - chr1_4:31032897-31032916 None:intergenic 30.0%
AGATAAGGTAACCAAAAAAG+TGG + chr1_4:31032901-31032920 Msa0159750:five_prime_UTR 30.0%
AAAAAAGTGGAGCGAAATTT+CGG + chr1_4:31032914-31032933 Msa0159750:five_prime_UTR 30.0%
! TTTCCATATTCACAAGGTTT+TGG - chr1_4:31032973-31032992 None:intergenic 30.0%
CTTGTGAATATGGAAACTAT+GGG + chr1_4:31032977-31032996 Msa0159750:exon 30.0%
TTGTGAATATGGAAACTATG+GGG + chr1_4:31032978-31032997 Msa0159750:exon 30.0%
TAAGGATATCTACAAACAAG+TGG + chr1_4:31033144-31033163 Msa0159750:CDS 30.0%
AAGGATATCTACAAACAAGT+GGG + chr1_4:31033145-31033164 Msa0159750:CDS 30.0%
! CACAAAAAAAGACAGCATTT+TGG - chr1_4:31033177-31033196 None:intergenic 30.0%
GGTGTTTGATTATGTTTCAT+AGG + chr1_4:31033276-31033295 Msa0159750:intron 30.0%
ATGTTTCATAGGAGTGAAAA+AGG + chr1_4:31033287-31033306 Msa0159750:intron 30.0%
TGTTTCATAGGAGTGAAAAA+GGG + chr1_4:31033288-31033307 Msa0159750:intron 30.0%
GAATCATATCTATCCGATTT+GGG - chr1_4:31033530-31033549 None:intergenic 30.0%
AGAATCATATCTATCCGATT+TGG - chr1_4:31033531-31033550 None:intergenic 30.0%
CTAATTCATCCTTACAAAAC+CGG - chr1_4:31033596-31033615 None:intergenic 30.0%
! TTTTCATATCAGACTGGTAA+AGG - chr1_4:31033838-31033857 None:intergenic 30.0%
! TATGAAAAATATGTTGGTGG+AGG + chr1_4:31033850-31033869 Msa0159750:intron 30.0%
GATCTACTTATCTACTTAGA+AGG - chr1_4:31033880-31033899 None:intergenic 30.0%
ATTAATTCTCTGTATGCCTA+CGG + chr1_4:31034075-31034094 Msa0159750:intron 30.0%
TGATATATAATGTGCAGATG+TGG + chr1_4:31034193-31034212 Msa0159750:intron 30.0%
!! CTTGTTAGTTTGAATTTTGC+TGG + chr1_4:31034298-31034317 Msa0159750:intron 30.0%
! TTGAATTTTGCTGGAGAATT+TGG + chr1_4:31034307-31034326 Msa0159750:intron 30.0%
CTTGTTTCATCAATGATCAT+TGG + chr1_4:31034373-31034392 Msa0159750:intron 30.0%
ACAAACATTGAAATATGCTC+AGG + chr1_4:31034777-31034796 Msa0159750:intron 30.0%
! CTTTAGAGAATCAACTACTT+TGG - chr1_4:31034982-31035001 None:intergenic 30.0%
! CAAAGTAGTTGATTCTCTAA+AGG + chr1_4:31034980-31034999 Msa0159750:CDS 30.0%
GAAAGTTTAGTTGAAAGTGA+TGG - chr1_4:31035034-31035053 None:intergenic 30.0%
TTCCCTGTATGAGATAATTA+TGG + chr1_4:31035161-31035180 Msa0159750:intron 30.0%
AAAAAGCCTTTCACAAATCT+AGG - chr1_4:31035238-31035257 None:intergenic 30.0%
AGATATCCAAGCTTCTTAAA+GGG + chr1_4:31035546-31035565 Msa0159750:CDS 30.0%
TTACAATTAGGTAGTACGAA+AGG - chr1_4:31035976-31035995 None:intergenic 30.0%
GTTTATCTTACCATTGGAAA+CGG - chr1_4:31036090-31036109 None:intergenic 30.0%
TAGTTATGATAGAGAGAAGA+TGG - chr1_4:31036241-31036260 None:intergenic 30.0%
! GTTAACATTGGAAAGTTTTC+AGG + chr1_4:31036490-31036509 Msa0159750:intron 30.0%
TTGTGCAATTTCTTGCTAAA+AGG - chr1_4:31036537-31036556 None:intergenic 30.0%
! TAGTCTAGAATTGAATCCTT+AGG + chr1_4:31036566-31036585 Msa0159750:intron 30.0%
!! AAAAGGTGGTTAGTTTGTAA+AGG - chr1_4:31036668-31036687 None:intergenic 30.0%
ATTCAATTTCGTTCAGCTAT+AGG + chr1_4:31036695-31036714 Msa0159750:intron 30.0%
TAATGATAGGGTATGAAATG+TGG - chr1_4:31036812-31036831 None:intergenic 30.0%
TTATACATTACATGCAGGTT+AGG - chr1_4:31036848-31036867 None:intergenic 30.0%
! CCATTTTATACATTACATGC+AGG - chr1_4:31036853-31036872 None:intergenic 30.0%
CCTGCATGTAATGTATAAAA+TGG + chr1_4:31036850-31036869 Msa0159750:intron 30.0%
GCATCTTCACAAATTGTTTA+TGG - chr1_4:31037027-31037046 None:intergenic 30.0%
ATATGACGAATGCAAACTAT+AGG - chr1_4:31037352-31037371 None:intergenic 30.0%
TCAATTTCATTTGCAAGTTC+TGG - chr1_4:31037490-31037509 None:intergenic 30.0%
GAAATAGTAGCAGTCATATA+AGG - chr1_4:31037517-31037536 None:intergenic 30.0%
! ACTGCTACTATTTCCTTTTT+AGG + chr1_4:31037523-31037542 Msa0159750:intron 30.0%
GTGAAACAAAACAGACTTAA+GGG - chr1_4:31037632-31037651 None:intergenic 30.0%
TGTGAAACAAAACAGACTTA+AGG - chr1_4:31037633-31037652 None:intergenic 30.0%
GATGAAACGAAAACAACTTA+AGG - chr1_4:31037693-31037712 None:intergenic 30.0%
ATCTCTTAAGATTTGAGTGT+TGG + chr1_4:31037716-31037735 Msa0159750:intron 30.0%
TAAGAAATATTGGTCCTGAT+AGG + chr1_4:31037771-31037790 Msa0159750:intron 30.0%
! GATTATCTCTGGTGTTAATT+TGG - chr1_4:31037854-31037873 None:intergenic 30.0%
!! AAATTTTGTGGTGTTAGCTT+GGG - chr1_4:31037913-31037932 None:intergenic 30.0%
! ACAAGGCTAAATTACACTTT+TGG - chr1_4:31038056-31038075 None:intergenic 30.0%
CCATGAGTGAAATTAATACA+AGG - chr1_4:31038073-31038092 None:intergenic 30.0%
CCTTGTATTAATTTCACTCA+TGG + chr1_4:31038070-31038089 Msa0159750:intron 30.0%
AAATCCATTGATAGGATCAT+AGG + chr1_4:31038148-31038167 Msa0159750:intron 30.0%
! CTTTCATCTTATTTGCAAAC+TGG - chr1_4:31038260-31038279 None:intergenic 30.0%
AGGATAAAATTGTGAATCTG+TGG + chr1_4:31038355-31038374 Msa0159750:CDS 30.0%
GGATAAAATTGTGAATCTGT+GGG + chr1_4:31038356-31038375 Msa0159750:CDS 30.0%
! ACATCATGTACTAACTTGTA+TGG - chr1_4:31038411-31038430 None:intergenic 30.0%
TTAGTACATGATGTAAAGAC+TGG + chr1_4:31038417-31038436 Msa0159750:CDS 30.0%
!! ACTGTTTTAGATGGGAATAT+TGG + chr1_4:31038462-31038481 Msa0159750:CDS 30.0%
TTAATATGAGCTGCAATAAG+AGG - chr1_4:31038489-31038508 None:intergenic 30.0%
! TTTTGGTCCAGCAAATTTTT+AGG + chr1_4:31038611-31038630 Msa0159750:three_prime_UTR 30.0%
!!! GAAATTTCGCTCCACTTTTT+TGG - chr1_4:31032915-31032934 None:intergenic 35.0%
AGACCAAAACCTTGTGAATA+TGG + chr1_4:31032967-31032986 Msa0159750:exon 35.0%
CCATAGTTTCCATATTCACA+AGG - chr1_4:31032979-31032998 None:intergenic 35.0%
CCTTGTGAATATGGAAACTA+TGG + chr1_4:31032976-31032995 Msa0159750:exon 35.0%
ATTCTTCTTCCTCAACCATT+TGG - chr1_4:31033056-31033075 None:intergenic 35.0%
!! TGTGTAAGAGCATGTACTTT+TGG + chr1_4:31033193-31033212 Msa0159750:intron 35.0%
ATGTTAACAGAACTTATCCC+CGG + chr1_4:31033448-31033467 Msa0159750:intron 35.0%
!! CGGTTTTGTAAGGATGAATT+AGG + chr1_4:31033594-31033613 Msa0159750:intron 35.0%
! TTTTCATATCAGACTGAGAC+TGG - chr1_4:31033766-31033785 None:intergenic 35.0%
TATCAGAGACTATTCCCTTA+AGG - chr1_4:31033910-31033929 None:intergenic 35.0%
TGCAGATGTGGTATAAACAA+GGG + chr1_4:31034205-31034224 Msa0159750:intron 35.0%
CTTACAGTAAAGAGAAACCA+TGG + chr1_4:31034247-31034266 Msa0159750:intron 35.0%
!!! TGATTTAGTTTTCCCCTTTC+TGG + chr1_4:31034401-31034420 Msa0159750:intron 35.0%
GGTTAGAAATTCACCTCTTA+AGG + chr1_4:31034564-31034583 Msa0159750:intron 35.0%
ACCTCTTAAGGTGATTAAGT+GGG + chr1_4:31034576-31034595 Msa0159750:intron 35.0%
AGAAGTAGTTATCTACAGCT+CGG - chr1_4:31034727-31034746 None:intergenic 35.0%
!! CAGGTTTATTTTCCCTAAGA+AGG + chr1_4:31034796-31034815 Msa0159750:intron 35.0%
! GTCTTCGATTTTCCTTCTTA+GGG - chr1_4:31034811-31034830 None:intergenic 35.0%
! TGTCTTCGATTTTCCTTCTT+AGG - chr1_4:31034812-31034831 None:intergenic 35.0%
TTGGATTAAGCAGGAAGAAA+TGG + chr1_4:31034887-31034906 Msa0159750:CDS 35.0%
TCTAAAGGACTTGAGATACA+AGG + chr1_4:31034995-31035014 Msa0159750:CDS 35.0%
GAGATATCCAAGCTTCTTAA+AGG + chr1_4:31035545-31035564 Msa0159750:CDS 35.0%
TCTTAAAGGGCCATTTGATA+TGG + chr1_4:31035559-31035578 Msa0159750:CDS 35.0%
TTGGTTATAAAAGCCACTAC+CGG + chr1_4:31035593-31035612 Msa0159750:CDS 35.0%
! TGAAACCTTTGAAAAGATGC+CGG - chr1_4:31035615-31035634 None:intergenic 35.0%
! TTTTGCTTGAATCAAGCTCT+GGG + chr1_4:31035732-31035751 Msa0159750:intron 35.0%
! TCCTTCATAACCTTGTCTTT+TGG - chr1_4:31035791-31035810 None:intergenic 35.0%
AAAGACAAGGTTATGAAGGA+AGG + chr1_4:31035791-31035810 Msa0159750:CDS 35.0%
! ATGTGCTTATGGCTATCTTT+TGG + chr1_4:31035879-31035898 Msa0159750:CDS 35.0%
! TGTGCTTATGGCTATCTTTT+GGG + chr1_4:31035880-31035899 Msa0159750:CDS 35.0%
TCAAGCTGAGAAGATTCATT+CGG - chr1_4:31035940-31035959 None:intergenic 35.0%
!!! GTAAACAGGTTAGTTTTCAG+AGG - chr1_4:31036050-31036069 None:intergenic 35.0%
AAGAAACGCATGAAGTAAAC+AGG - chr1_4:31036064-31036083 None:intergenic 35.0%
! GTTTCTTTTTCCGTTTCCAA+TGG + chr1_4:31036077-31036096 Msa0159750:intron 35.0%
TTTGTCATAATCCGACAACA+TGG + chr1_4:31036612-31036631 Msa0159750:intron 35.0%
TGATTTCCCAGACTAATGTT+TGG + chr1_4:31036916-31036935 Msa0159750:intron 35.0%
! ACTTGTAACAGTGTTGTTGA+TGG - chr1_4:31037119-31037138 None:intergenic 35.0%
AGACGAGATAATCAAATCCT+CGG - chr1_4:31037293-31037312 None:intergenic 35.0%
TTCTGTTCTCCATGAATCAA+GGG - chr1_4:31037316-31037335 None:intergenic 35.0%
TTTCTGTTCTCCATGAATCA+AGG - chr1_4:31037317-31037336 None:intergenic 35.0%
TGATTCATGGAGAACAGAAA+AGG + chr1_4:31037317-31037336 Msa0159750:CDS 35.0%
ATATATGCATACCAGAGGAT+TGG - chr1_4:31037393-31037412 None:intergenic 35.0%
!! ACTATTTCCTTTTTAGGCCA+TGG + chr1_4:31037529-31037548 Msa0159750:intron 35.0%
ATACAAACTCAACTACACCA+TGG - chr1_4:31037549-31037568 None:intergenic 35.0%
AAATATTGGTCCTGATAGGA+AGG + chr1_4:31037775-31037794 Msa0159750:intron 35.0%
! ATCTCTGGTGTTAATTTGGT+GGG - chr1_4:31037850-31037869 None:intergenic 35.0%
! TATCTCTGGTGTTAATTTGG+TGG - chr1_4:31037851-31037870 None:intergenic 35.0%
!! CAAATTTTGTGGTGTTAGCT+TGG - chr1_4:31037914-31037933 None:intergenic 35.0%
TAGCTAAGAAGGAAATCATG+AGG - chr1_4:31038118-31038137 None:intergenic 35.0%
! ATCCTATCAATGGATTTGCA+GGG - chr1_4:31038145-31038164 None:intergenic 35.0%
TAGTCCTATGATCCTATCAA+TGG - chr1_4:31038155-31038174 None:intergenic 35.0%
CAAGTGATAGCAATTGAACA+AGG + chr1_4:31038306-31038325 Msa0159750:CDS 35.0%
ATAGCAATTGAACAAGGAGT+TGG + chr1_4:31038312-31038331 Msa0159750:CDS 35.0%
!! CAAGGAGTTGGTAGTATAAA+TGG + chr1_4:31038324-31038343 Msa0159750:CDS 35.0%
ATCTGTGGGAAGAAAAAACT+AGG + chr1_4:31038370-31038389 Msa0159750:CDS 35.0%
TGTGGAAATGAACATCAACT+CGG - chr1_4:31038539-31038558 None:intergenic 35.0%
TTATGGATAAGAACAAGGTG+TGG - chr1_4:31038557-31038576 None:intergenic 35.0%
! TGGTGTCTTTTGACCAAAAA+AGG + chr1_4:31038650-31038669 Msa0159750:three_prime_UTR 35.0%
! GGTGTCTTTTGACCAAAAAA+GGG + chr1_4:31038651-31038670 Msa0159750:three_prime_UTR 35.0%
!!! GACGATTTGATACCCTTTTT+TGG - chr1_4:31038666-31038685 None:intergenic 35.0%
TATGTCAGTACAGGCAAAAT+TGG - chr1_4:31038688-31038707 None:intergenic 35.0%
ATAGGAGTGAAAAAGGGTAG+TGG + chr1_4:31033294-31033313 Msa0159750:intron 40.0%
! ACCTAACAAACCGGTTCTAT+GGG - chr1_4:31033373-31033392 None:intergenic 40.0%
AATTGGGAGGTTGAGAACAA+AGG - chr1_4:31033478-31033497 None:intergenic 40.0%
!! AGTGTTGGCTGCTAACAATT+GGG - chr1_4:31033494-31033513 None:intergenic 40.0%
AATTGTTAGCAGCCAACACT+CGG + chr1_4:31033494-31033513 Msa0159750:intron 40.0%
! ACATAGGTGTCACGAAAATC+AGG - chr1_4:31033621-31033640 None:intergenic 40.0%
! TGATTTTCGTGACACCTATG+TGG + chr1_4:31033620-31033639 Msa0159750:intron 40.0%
! GATTTTCGTGACACCTATGT+GGG + chr1_4:31033621-31033640 Msa0159750:intron 40.0%
TATCAGACTGAGACTGGTAA+AGG - chr1_4:31033760-31033779 None:intergenic 40.0%
TATACTCCAGTCCTCCTTAT+AGG + chr1_4:31033787-31033806 Msa0159750:intron 40.0%
ATACTCCAGTCCTCCTTATA+GGG + chr1_4:31033788-31033807 Msa0159750:intron 40.0%
AGTAGATCTCACTGACCTTA+AGG + chr1_4:31033892-31033911 Msa0159750:intron 40.0%
GTAGATCTCACTGACCTTAA+GGG + chr1_4:31033893-31033912 Msa0159750:intron 40.0%
GGAATAGTCTCTGATACTTG+CGG + chr1_4:31033914-31033933 Msa0159750:intron 40.0%
GAATAGTCTCTGATACTTGC+GGG + chr1_4:31033915-31033934 Msa0159750:intron 40.0%
ACACGGGTGGAATATCTATA+TGG - chr1_4:31033979-31033998 None:intergenic 40.0%
TCTACCAGTGTCACAAATAG+TGG + chr1_4:31034030-31034049 Msa0159750:intron 40.0%
CTACCAGTGTCACAAATAGT+GGG + chr1_4:31034031-31034050 Msa0159750:intron 40.0%
GAGCAGATCATTTATTCCGT+AGG - chr1_4:31034094-31034113 None:intergenic 40.0%
! TGAAAAGAGCACATGGTAAG+AGG - chr1_4:31034156-31034175 None:intergenic 40.0%
! GGTTATCTGAAAAGAGCACA+TGG - chr1_4:31034163-31034182 None:intergenic 40.0%
! GTGCTCTTTTCAGATAACCT+TGG + chr1_4:31034164-31034183 Msa0159750:intron 40.0%
GTGCAGATGTGGTATAAACA+AGG + chr1_4:31034204-31034223 Msa0159750:intron 40.0%
! TAGGGCATCAAATCCAGAAA+GGG - chr1_4:31034417-31034436 None:intergenic 40.0%
! TTAGGGCATCAAATCCAGAA+AGG - chr1_4:31034418-31034437 None:intergenic 40.0%
TTCTGGATTTGATGCCCTAA+CGG + chr1_4:31034418-31034437 Msa0159750:intron 40.0%
GCTGAATACTCGTGATTGTT+TGG + chr1_4:31034496-31034515 Msa0159750:intron 40.0%
GAGGTGAATTTCTAACCACT+GGG - chr1_4:31034561-31034580 None:intergenic 40.0%
AGAGGTGAATTTCTAACCAC+TGG - chr1_4:31034562-31034581 None:intergenic 40.0%
CACCTCTTAAGGTGATTAAG+TGG + chr1_4:31034575-31034594 Msa0159750:intron 40.0%
TCCCACTTAATCACCTTAAG+AGG - chr1_4:31034580-31034599 None:intergenic 40.0%
GTTGTATGCATCAACAGCTT+TGG + chr1_4:31034848-31034867 Msa0159750:CDS 40.0%
!! TGCATCAACAGCTTTGGAAA+TGG + chr1_4:31034854-31034873 Msa0159750:CDS 40.0%
TGGAAATGGAAGAAGCAAGT+TGG + chr1_4:31034868-31034887 Msa0159750:CDS 40.0%
! AGAAGCAAGTTGGATTAAGC+AGG + chr1_4:31034878-31034897 Msa0159750:CDS 40.0%
GAATGTCGTTGGACTTAGTT+GGG - chr1_4:31034938-31034957 None:intergenic 40.0%
AGAATGTCGTTGGACTTAGT+TGG - chr1_4:31034939-31034958 None:intergenic 40.0%
CAACTTGACAAGAATGTCGT+TGG - chr1_4:31034949-31034968 None:intergenic 40.0%
CAACGACATTCTTGTCAAGT+TGG + chr1_4:31034947-31034966 Msa0159750:CDS 40.0%
CATTACATTACGGGTCTGTT+TGG + chr1_4:31035275-31035294 Msa0159750:intron 40.0%
ACCTGCTTGACATACAACAA+GGG - chr1_4:31035413-31035432 None:intergenic 40.0%
TACCTGCTTGACATACAACA+AGG - chr1_4:31035414-31035433 None:intergenic 40.0%
AATAGACGTGAGCAACATAC+TGG + chr1_4:31035514-31035533 Msa0159750:CDS 40.0%
! AAATGGCCCTTTAAGAAGCT+TGG - chr1_4:31035555-31035574 None:intergenic 40.0%
! CTTTTGCTTGAATCAAGCTC+TGG + chr1_4:31035731-31035750 Msa0159750:intron 40.0%
TCCTACAAATGTACCTTGGA+TGG + chr1_4:31035764-31035783 Msa0159750:CDS 40.0%
CCTACAAATGTACCTTGGAT+GGG + chr1_4:31035765-31035784 Msa0159750:CDS 40.0%
GCCAAAAGACAAGGTTATGA+AGG + chr1_4:31035787-31035806 Msa0159750:CDS 40.0%
ATGAAGGAAGGATTGTTGAC+AGG + chr1_4:31035803-31035822 Msa0159750:CDS 40.0%
! GTGCTTATGGCTATCTTTTG+GGG + chr1_4:31035881-31035900 Msa0159750:CDS 40.0%
! TGCTTATGGCTATCTTTTGG+GGG + chr1_4:31035882-31035901 Msa0159750:CDS 40.0%
GAATGAATCTTCTCAGCTTG+AGG + chr1_4:31035939-31035958 Msa0159750:CDS 40.0%
!! TTCAAACTAATGATGGGCTG+TGG - chr1_4:31036592-31036611 None:intergenic 40.0%
! ATCCGACAACATGGTTCTTT+TGG + chr1_4:31036621-31036640 Msa0159750:intron 40.0%
CACCAAAAGAACCATGTTGT+CGG - chr1_4:31036626-31036645 None:intergenic 40.0%
AACCCATATGGTGAAGAGAA+AGG + chr1_4:31036786-31036805 Msa0159750:intron 40.0%
GGGAAATCATGCTCTTAACA+TGG - chr1_4:31036905-31036924 None:intergenic 40.0%
! ATTGGGCCAAACATTAGTCT+GGG - chr1_4:31036925-31036944 None:intergenic 40.0%
AATTGGGCCAAACATTAGTC+TGG - chr1_4:31036926-31036945 None:intergenic 40.0%
! GGCAGTGTAGTGTTGTTAAA+TGG + chr1_4:31036961-31036980 Msa0159750:intron 40.0%
TGATGGCAGAATATGGAAGA+AGG - chr1_4:31037102-31037121 None:intergenic 40.0%
!! GTGTTGTTGATGGCAGAATA+TGG - chr1_4:31037109-31037128 None:intergenic 40.0%
! CGAGATTTCTCTAGGAACAA+CGG - chr1_4:31037253-31037272 None:intergenic 40.0%
CAAGATCACGAGATTTCTCT+AGG - chr1_4:31037261-31037280 None:intergenic 40.0%
! TGATCTTGAGATTGATTCCG+AGG + chr1_4:31037273-31037292 Msa0159750:CDS 40.0%
TGCATTCGTCATATACCTAC+TGG + chr1_4:31037358-31037377 Msa0159750:CDS 40.0%
GCATTCGTCATATACCTACT+GGG + chr1_4:31037359-31037378 Msa0159750:CDS 40.0%
CACAGATATATGCATACCAG+AGG - chr1_4:31037398-31037417 None:intergenic 40.0%
! CATTTGCAAGTTCTGGCAAA+TGG - chr1_4:31037483-31037502 None:intergenic 40.0%
AACTACACCATGGCCTAAAA+AGG - chr1_4:31037539-31037558 None:intergenic 40.0%
!! GATTTGAGTGTTGGACACTT+TGG + chr1_4:31037725-31037744 Msa0159750:intron 40.0%
ACACATTAGTCCTTCCTATC+AGG - chr1_4:31037788-31037807 None:intergenic 40.0%
TTCCCTGCAAATCCATTGAT+AGG + chr1_4:31038140-31038159 Msa0159750:intron 40.0%
! GATCCTATCAATGGATTTGC+AGG - chr1_4:31038146-31038165 None:intergenic 40.0%
TGTGGGAAGAAAAAACTAGG+AGG + chr1_4:31038373-31038392 Msa0159750:CDS 40.0%
TTCCTTCGTTCAGCTCCAAA+TGG + chr1_4:31033038-31033057 Msa0159750:CDS 45.0%
! AACCATTTGGAGCTGAACGA+AGG - chr1_4:31033043-31033062 None:intergenic 45.0%
AGGAAGAAGAATCCACGTGT+TGG + chr1_4:31033064-31033083 Msa0159750:CDS 45.0%
! CCTAACAAACCGGTTCTATG+GGG - chr1_4:31033372-31033391 None:intergenic 45.0%
! CACCTAACAAACCGGTTCTA+TGG - chr1_4:31033374-31033393 None:intergenic 45.0%
!! TAGAACCGGTTTGTTAGGTG+AGG + chr1_4:31033374-31033393 Msa0159750:intron 45.0%
!! GAGTGTTGGCTGCTAACAAT+TGG - chr1_4:31033495-31033514 None:intergenic 45.0%
! CGGTGGATTTAGTCCCAAAT+CGG + chr1_4:31033514-31033533 Msa0159750:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG - chr1_4:31033587-31033606 None:intergenic 45.0%
AGCAACTTGACCCTATAAGG+AGG - chr1_4:31033723-31033742 None:intergenic 45.0%
AGCAGCAACTTGACCCTATA+AGG - chr1_4:31033726-31033745 None:intergenic 45.0%
AGCAACTTGACCCTATAAGG+AGG - chr1_4:31033723-31033742 None:intergenic 45.0%
AGCAGCAACTTGACCCTATA+AGG - chr1_4:31033726-31033745 None:intergenic 45.0%
! GTGGGAGCTTCATGTTTCTA+AGG + chr1_4:31034049-31034068 Msa0159750:intron 45.0%
! AGGGCATCAAATCCAGAAAG+GGG - chr1_4:31034416-31034435 None:intergenic 45.0%
CATGACAAAAGCCACCGTTA+GGG - chr1_4:31034435-31034454 None:intergenic 45.0%
! GTGGCTTTTGTCATGCACAA+TGG + chr1_4:31034440-31034459 Msa0159750:intron 45.0%
TGAGCTTAGCTCAAGTGGTA+GGG - chr1_4:31034618-31034637 None:intergenic 45.0%
TACCACTTGAGCTAAGCTCA+CGG + chr1_4:31034618-31034637 Msa0159750:intron 45.0%
TGGTACGTGATTCAGATCTG+TGG + chr1_4:31034907-31034926 Msa0159750:CDS 45.0%
GGTACGTGATTCAGATCTGT+GGG + chr1_4:31034908-31034927 Msa0159750:CDS 45.0%
! TCCCTTGTTGTATGTCAAGC+AGG + chr1_4:31035409-31035428 Msa0159750:intron 45.0%
GTTGTATGTCAAGCAGGTAG+AGG + chr1_4:31035415-31035434 Msa0159750:intron 45.0%
AAAGGGCCATTTGATATGGC+AGG + chr1_4:31035563-31035582 Msa0159750:CDS 45.0%
CATGCTCCTGCCATATCAAA+TGG - chr1_4:31035572-31035591 None:intergenic 45.0%
! TGATATGGCAGGAGCATGTT+TGG + chr1_4:31035574-31035593 Msa0159750:CDS 45.0%
! CTTTGAAAAGATGCCGGTAG+TGG - chr1_4:31035609-31035628 None:intergenic 45.0%
! CACTACCGGCATCTTTTCAA+AGG + chr1_4:31035607-31035626 Msa0159750:CDS 45.0%
CAGCTCCTACAAATGTACCT+TGG + chr1_4:31035760-31035779 Msa0159750:CDS 45.0%
CCCATCCAAGGTACATTTGT+AGG - chr1_4:31035768-31035787 None:intergenic 45.0%
GACAGGTGTTTGATCGAGAA+TGG + chr1_4:31035820-31035839 Msa0159750:CDS 45.0%
AGGTGTTTGATCGAGAATGG+AGG + chr1_4:31035823-31035842 Msa0159750:CDS 45.0%
!! GGCTATCTTTTGGGGGAAAA+AGG + chr1_4:31035889-31035908 Msa0159750:CDS 45.0%
AAGGAGTTCACCACCTCATA+AGG + chr1_4:31035908-31035927 Msa0159750:CDS 45.0%
AGGAGTTCACCACCTCATAA+GGG + chr1_4:31035909-31035928 Msa0159750:CDS 45.0%
! CGACAACATGGTTCTTTTGG+TGG + chr1_4:31036624-31036643 Msa0159750:intron 45.0%
TACGTTGGCAGAAACCCATA+TGG + chr1_4:31036774-31036793 Msa0159750:intron 45.0%
GGCCTTTCTCTTCACCATAT+GGG - chr1_4:31036791-31036810 None:intergenic 45.0%
TGGCCTTTCTCTTCACCATA+TGG - chr1_4:31036792-31036811 None:intergenic 45.0%
! GTGTTGTTAAATGGCCGCTA+AGG + chr1_4:31036970-31036989 Msa0159750:intron 45.0%
TTGTTAAATGGCCGCTAAGG+AGG + chr1_4:31036973-31036992 Msa0159750:intron 45.0%
ATTTGTGAAGATGCCTGCCA+TGG + chr1_4:31037033-31037052 Msa0159750:intron 45.0%
CATCCATATGAACATCCCAG+CGG - chr1_4:31037071-31037090 None:intergenic 45.0%
ATCTCGTCTCCCTTGATTCA+TGG + chr1_4:31037304-31037323 Msa0159750:CDS 45.0%
GATTGGACAGTTATCCCAGT+AGG - chr1_4:31037376-31037395 None:intergenic 45.0%
TTGGAGTATGCTCCTTCTCA+AGG - chr1_4:31037887-31037906 None:intergenic 45.0%
! TTGAGAAGGAGCATACTCCA+AGG + chr1_4:31037886-31037905 Msa0159750:intron 45.0%
TGCAGGGAATGTAGCTAAGA+AGG - chr1_4:31038129-31038148 None:intergenic 45.0%
!! ATTAAAAACTAATAATAATT+TGG - chr1_4:31035350-31035369 None:intergenic 5.0%
!! AAATAAATATTAAGAAATAT+TGG + chr1_4:31037761-31037780 Msa0159750:intron 5.0%
CGTTCAGCTCCAAATGGTTG+AGG + chr1_4:31033044-31033063 Msa0159750:CDS 50.0%
CACAAGAACAGTCCAACACG+TGG - chr1_4:31033079-31033098 None:intergenic 50.0%
! GGAGTGAAAAAGGGTAGTGG+AGG + chr1_4:31033297-31033316 Msa0159750:intron 50.0%
! TTGTGTAGGCTCGGTCACAA+GGG - chr1_4:31033349-31033368 None:intergenic 50.0%
TCTATGGGGTTGTGTAGGCT+CGG - chr1_4:31033358-31033377 None:intergenic 50.0%
CCTACACAACCCCATAGAAC+CGG + chr1_4:31033360-31033379 Msa0159750:intron 50.0%
!! CCCCATAGAACCGGTTTGTT+AGG + chr1_4:31033369-31033388 Msa0159750:intron 50.0%
GCAGTCCTCACCTAACAAAC+CGG - chr1_4:31033382-31033401 None:intergenic 50.0%
TTGAGAACAAAGGCGAACCG+GGG - chr1_4:31033468-31033487 None:intergenic 50.0%
GTTGAGAACAAAGGCGAACC+GGG - chr1_4:31033469-31033488 None:intergenic 50.0%
GGTTGAGAACAAAGGCGAAC+CGG - chr1_4:31033470-31033489 None:intergenic 50.0%
GTTGGCTGCTAACAATTGGG+AGG - chr1_4:31033491-31033510 None:intergenic 50.0%
GGACTAAATCCACCGAGTGT+TGG - chr1_4:31033509-31033528 None:intergenic 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG + chr1_4:31033584-31033603 Msa0159750:intron 50.0%
CCTAACAGAGTCACCCACAT+AGG - chr1_4:31033637-31033656 None:intergenic 50.0%
CCTATGTGGGTGACTCTGTT+AGG + chr1_4:31033634-31033653 Msa0159750:intron 50.0%
CTCTGTTAGGATTCGAACCC+AGG + chr1_4:31033647-31033666 Msa0159750:intron 50.0%
CTCCTCCAGTCCTCCTTATA+GGG + chr1_4:31033710-31033729 Msa0159750:intron 50.0%
CTTGACCCTATAAGGAGGAC+TGG - chr1_4:31033718-31033737 None:intergenic 50.0%
CTTGACCCTATAAGGAGGAC+TGG - chr1_4:31033718-31033737 None:intergenic 50.0%
AGCTCCCACTACTTGTGACA+CGG - chr1_4:31033996-31034015 None:intergenic 50.0%
GCTCCCACTATTTGTGACAC+TGG - chr1_4:31034037-31034056 None:intergenic 50.0%
TGGATTTGATGCCCTAACGG+TGG + chr1_4:31034421-31034440 Msa0159750:intron 50.0%
GCATGACAAAAGCCACCGTT+AGG - chr1_4:31034436-31034455 None:intergenic 50.0%
TGTTTGGTCAAGTAGCCCAG+TGG + chr1_4:31034543-31034562 Msa0159750:intron 50.0%
GTGAGCTTAGCTCAAGTGGT+AGG - chr1_4:31034619-31034638 None:intergenic 50.0%
ACCACTTGAGCTAAGCTCAC+GGG + chr1_4:31034619-31034638 Msa0159750:intron 50.0%
! CTTGTCTTTTGGCCCATCCA+AGG - chr1_4:31035780-31035799 None:intergenic 50.0%
CTTGGATGGGCCAAAAGACA+AGG + chr1_4:31035778-31035797 Msa0159750:CDS 50.0%
GGAGTTCACCACCTCATAAG+GGG + chr1_4:31035910-31035929 Msa0159750:CDS 50.0%
CATTCGGAGAACCCCTTATG+AGG - chr1_4:31035924-31035943 None:intergenic 50.0%
!! TAATGATGGGCTGTGGCCTA+AGG - chr1_4:31036585-31036604 None:intergenic 50.0%
AAATGGCCGCTAAGGAGGAA+TGG + chr1_4:31036978-31036997 Msa0159750:intron 50.0%
GGGATAACTGTCCAATCCTC+TGG + chr1_4:31037379-31037398 Msa0159750:CDS 50.0%
ATGCTCCTTCTCAAGGTCTC+AGG - chr1_4:31037880-31037899 None:intergenic 50.0%
! GTTGTGTAGGCTCGGTCACA+AGG - chr1_4:31033350-31033369 None:intergenic 55.0%
CCGGTTCTATGGGGTTGTGT+AGG - chr1_4:31033363-31033382 None:intergenic 55.0%
TGTTAGCAGCCAACACTCGG+TGG + chr1_4:31033497-31033516 Msa0159750:intron 55.0%
ACACTCCTCACCGTACAAGC+CGG + chr1_4:31033574-31033593 Msa0159750:intron 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG - chr1_4:31033582-31033601 None:intergenic 55.0%
GAGGAGGACATGGGAAACCT+GGG - chr1_4:31033667-31033686 None:intergenic 55.0%
ACAGTAGCAGCAAGGAGGAC+TGG - chr1_4:31033689-31033708 None:intergenic 55.0%
CCTATAAGGAGGACTGGAGG+AGG - chr1_4:31033712-31033731 None:intergenic 55.0%
CCTCCTCCAGTCCTCCTTAT+AGG + chr1_4:31033709-31033728 Msa0159750:intron 55.0%
GACCCTATAAGGAGGACTGG+AGG - chr1_4:31033715-31033734 None:intergenic 55.0%
AGTCTCTGATACTTGCGGGC+AGG + chr1_4:31033919-31033938 Msa0159750:intron 55.0%
GTCTCTGATACTTGCGGGCA+GGG + chr1_4:31033920-31033939 Msa0159750:intron 55.0%
ACTTGCGGGCAGGGATACTT+TGG + chr1_4:31033929-31033948 Msa0159750:intron 55.0%
TCCACCCGTGTCACAAGTAG+TGG + chr1_4:31033988-31034007 Msa0159750:intron 55.0%
CCACCCGTGTCACAAGTAGT+GGG + chr1_4:31033989-31034008 Msa0159750:intron 55.0%
GCTCCCACTACTTGTGACAC+GGG - chr1_4:31033995-31034014 None:intergenic 55.0%
CCACTTGAGCTAAGCTCACG+GGG + chr1_4:31034620-31034639 Msa0159750:intron 55.0%
TCGGAGAACCCCTTATGAGG+TGG - chr1_4:31035921-31035940 None:intergenic 55.0%
GTCGCACCATTCCTCCTTAG+CGG - chr1_4:31036987-31037006 None:intergenic 55.0%
TGTGAAGATGCCTGCCATGG+TGG + chr1_4:31037036-31037055 Msa0159750:intron 55.0%
ATGAACATCCCAGCGGCCTA+TGG - chr1_4:31037064-31037083 None:intergenic 55.0%
AGGCCGCTGGGATGTTCATA+TGG + chr1_4:31037065-31037084 Msa0159750:intron 55.0%
! GTGGTGTTAGCTTGGGACCT+TGG - chr1_4:31037906-31037925 None:intergenic 55.0%
GGAGGAGGACATGGGAAACC+TGG - chr1_4:31033668-31033687 None:intergenic 60.0%
GGAGGACTGGAGGAGGACAT+GGG - chr1_4:31033676-31033695 None:intergenic 60.0%
AGGAGGACTGGAGGAGGACA+TGG - chr1_4:31033677-31033696 None:intergenic 60.0%
GTAGCAGCAAGGAGGACTGG+AGG - chr1_4:31033686-31033705 None:intergenic 60.0%
GGAGGACAGTAGCAGCAAGG+AGG - chr1_4:31033694-31033713 None:intergenic 60.0%
GGAGGAGGACAGTAGCAGCA+AGG - chr1_4:31033697-31033716 None:intergenic 60.0%
CCCACTACTTGTGACACGGG+TGG - chr1_4:31033992-31034011 None:intergenic 60.0%
CCCCGTGAGCTTAGCTCAAG+TGG - chr1_4:31034623-31034642 None:intergenic 60.0%
GCAGCAAGGAGGACTGGAGG+AGG - chr1_4:31033683-31033702 None:intergenic 65.0%
!! GCCTGCCATGGTGGTGCCAT+AGG + chr1_4:31037045-31037064 Msa0159750:intron 65.0%
GCCTATGGCACCACCATGGC+AGG - chr1_4:31037049-31037068 None:intergenic 65.0%
AGCGGCCTATGGCACCACCA+TGG - chr1_4:31037053-31037072 None:intergenic 65.0%
!! ATGGTGGTGCCATAGGCCGC+TGG + chr1_4:31037052-31037071 Msa0159750:intron 65.0%
!! TGGTGGTGCCATAGGCCGCT+GGG + chr1_4:31037053-31037072 Msa0159750:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 31032874 31038779 31032874 ID=Msa0159750;Name=Msa0159750
chr1_4 mRNA 31032874 31038779 31032874 ID=Msa0159750-mRNA-1;Parent=Msa0159750;Name=Msa0159750-mRNA-1;_AED=0.24;_eAED=0.24;_QI=112|1|1|1|1|1|6|258|420
chr1_4 exon 31032874 31033166 31032874 ID=Msa0159750-mRNA-1:exon:9854;Parent=Msa0159750-mRNA-1
chr1_4 exon 31034799 31035016 31034799 ID=Msa0159750-mRNA-1:exon:9855;Parent=Msa0159750-mRNA-1
chr1_4 exon 31035431 31035628 31035431 ID=Msa0159750-mRNA-1:exon:9856;Parent=Msa0159750-mRNA-1
chr1_4 exon 31035748 31035960 31035748 ID=Msa0159750-mRNA-1:exon:9857;Parent=Msa0159750-mRNA-1
chr1_4 exon 31037223 31037400 31037223 ID=Msa0159750-mRNA-1:exon:9858;Parent=Msa0159750-mRNA-1
chr1_4 exon 31038247 31038779 31038247 ID=Msa0159750-mRNA-1:exon:9859;Parent=Msa0159750-mRNA-1
chr1_4 five_prime_UTR 31032874 31032985 31032874 ID=Msa0159750-mRNA-1:five_prime_utr;Parent=Msa0159750-mRNA-1
chr1_4 CDS 31032986 31033166 31032986 ID=Msa0159750-mRNA-1:cds;Parent=Msa0159750-mRNA-1
chr1_4 CDS 31034799 31035016 31034799 ID=Msa0159750-mRNA-1:cds;Parent=Msa0159750-mRNA-1
chr1_4 CDS 31035431 31035628 31035431 ID=Msa0159750-mRNA-1:cds;Parent=Msa0159750-mRNA-1
chr1_4 CDS 31035748 31035960 31035748 ID=Msa0159750-mRNA-1:cds;Parent=Msa0159750-mRNA-1
chr1_4 CDS 31037223 31037400 31037223 ID=Msa0159750-mRNA-1:cds;Parent=Msa0159750-mRNA-1
chr1_4 CDS 31038247 31038521 31038247 ID=Msa0159750-mRNA-1:cds;Parent=Msa0159750-mRNA-1
chr1_4 three_prime_UTR 31038522 31038779 31038522 ID=Msa0159750-mRNA-1:three_prime_utr;Parent=Msa0159750-mRNA-1
Gene Sequence

>Msa0159750

ATGGAAACTATGGGGTCTGAAAGTTGTTGTGCAAGAACTGTTCATGATATTGTTCCTTCGTTCAGCTCCAAATGGTTGAGGAAGAAGAATCCACGTGTTGGACTGTTCTTGTGTTCTTTCAGAGTTAGAGCTTGTCAATCCATTGCTAACAACAATAATAAGGATATCTACAAACAAGTGGGTTTATTTTCCCTAAGAAGGAAAATCGAAGACACAGTTATTCGCGCTGAGTTGTATGCATCAACAGCTTTGGAAATGGAAGAAGCAAGTTGGATTAAGCAGGAAGAAATGGTACGTGATTCAGATCTGTGGGATGACCCAACTAAGTCCAACGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGTAGTTGATTCTCTAAAGGACTTGAGATACAAGGTAGAGGAAGCACAGCTGATCAAGCAGTTAGCTGAGATGAATGTTATTGATTACGGGCTCTATAAACAAGCATATGATGCATCAATAGACGTGAGCAACATACTGGATCAGTATGAGATATCCAAGCTTCTTAAAGGGCCATTTGATATGGCAGGAGCATGTTTGGTTATAAAAGCCACTACCGGCATCTTTTCAAAGCTCTGGGCAGAACAGCTCCTACAAATGTACCTTGGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAGGTGTTTGATCGAGAATGGAGGAATCAATTTAGCAACTATAGAGTTTGAATTTGAATGTGCTTATGGCTATCTTTTGGGGGAAAAAGGAGTTCACCACCTCATAAGGGGTTCTCCGAATGAATCTTCTCAGCTTGAGACTAGCACTGCAACTGTTGATGTTATTCCGTTGTTCCTAGAGAAATCTCGTGATCTTGAGATTGATTCCGAGGATTTGATTATCTCGTCTCCCTTGATTCATGGAGAACAGAAAAGGCAGACTCAGCCTATAGTTTGCATTCGTCATATACCTACTGGGATAACTGTCCAATCCTCTGGTGAGAGAAGCCAGTTTGCAAATAAGATGAAAGCACTAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAATTGAACAAGGAGTTGGTAGTATAAATGGTATAGTGAAGGATAAAATTGTGAATCTGTGGGAAGAAAAAACTAGGAGGTATGTATCTCATCCATACAAGTTAGTACATGATGTAAAGACTGGCATTGAGATGTCAGATCTAAATACTGTTTTAGATGGGAATATTGGACCTCTTATTGCAGCTCATATTAATACTAGAGAGTAA

Protein sequence

>Msa0159750

METMGSESCCARTVHDIVPSFSSKWLRKKNPRVGLFLCSFRVRACQSIANNNNKDIYKQVGLFSLRRKIEDTVIRAELYASTALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAQLIKQLAEMNVIDYGLYKQAYDASIDVSNILDQYEISKLLKGPFDMAGACLVIKATTGIFSKLWAEQLLQMYLGWAKRQGYEGRIVDRCLIENGGINLATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTATVDVIPLFLEKSRDLEIDSEDLIISSPLIHGEQKRQTQPIVCIRHIPTGITVQSSGERSQFANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKTRRYVSHPYKLVHDVKTGIEMSDLNTVLDGNIGPLIAAHINTRE*