AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061520 MtrunA17_Chr7g0239511 90.602 266 25 0 1 266 1 266 0.0 505
Msa1061520 MtrunA17_Chr7g0239501 88.346 266 31 0 1 266 1 266 5.53e-177 488
Msa1061520 MtrunA17_Chr7g0239451 76.981 265 61 0 1 265 1 265 4.76e-153 427
Msa1061520 MtrunA17_Chr7g0239491 74.717 265 65 2 1 265 1 263 3.93e-146 409
Msa1061520 MtrunA17_Chr7g0239481 73.684 266 69 1 1 266 1 265 5.24e-141 397
Msa1061520 MtrunA17_Chr7g0239461 60.755 265 54 3 1 265 1 215 1.42e-108 312
Msa1061520 MtrunA17_Chr3g0112151 58.333 264 106 1 3 266 73 332 2.76e-106 311
Msa1061520 MtrunA17_Chr4g0032141 56.250 256 108 1 11 266 51 302 3.93e-103 302
Msa1061520 MtrunA17_Chr3g0112261 56.538 260 109 1 7 266 10 265 7.27e-102 298
Msa1061520 MtrunA17_Chr3g0112271 55.849 265 113 1 2 266 3 263 1.78e-101 296
Msa1061520 MtrunA17_Chr3g0112171 58.566 251 100 1 16 266 15 261 8.56e-101 295
Msa1061520 MtrunA17_Chr3g0112141 56.693 254 98 2 16 265 17 262 3.80e-95 281
Msa1061520 MtrunA17_Chr4g0032181 53.191 235 106 1 32 266 17 247 2.22e-85 255
Msa1061520 MtrunA17_Chr4g0075531 33.202 253 154 6 16 264 7 248 1.00e-26 104
Msa1061520 MtrunA17_Chr7g0259521 30.469 256 164 6 16 264 6 254 4.23e-25 100
Msa1061520 MtrunA17_Chr7g0259531 32.171 258 165 5 12 264 7 259 7.69e-25 99.8
Msa1061520 MtrunA17_Chr3g0122901 29.482 251 160 6 22 266 81 320 2.82e-22 94.0
Msa1061520 MtrunA17_Chr7g0249571 31.720 186 121 4 23 203 45 229 3.67e-21 90.9
Msa1061520 MtrunA17_Chr4g0026001 31.128 257 160 8 16 266 14 259 1.13e-20 88.6
Msa1061520 MtrunA17_Chr1g0182511 30.385 260 160 6 16 264 14 263 1.69e-20 88.2
Msa1061520 MtrunA17_Chr8g0357481 26.848 257 175 4 16 264 14 265 3.36e-20 87.8
Msa1061520 MtrunA17_Chr3g0112321 48.544 103 33 3 148 247 2 87 1.57e-19 80.9
Msa1061520 MtrunA17_Chr4g0074511 28.409 264 165 7 16 266 40 292 5.53e-19 84.3
Msa1061520 MtrunA17_Chr4g0028911 28.682 258 173 8 16 266 11 264 1.99e-18 82.4
Msa1061520 MtrunA17_Chr0c30g0494101 28.679 265 161 8 16 266 40 290 2.15e-18 82.8
Msa1061520 MtrunA17_Chr4g0028921 29.070 258 172 8 16 266 11 264 1.25e-17 80.5
Msa1061520 MtrunA17_Chr4g0025971 28.346 254 171 6 16 266 14 259 1.55e-17 80.1
Msa1061520 MtrunA17_Chr6g0459301 28.777 278 168 9 1 264 1 262 1.66e-17 79.7
Msa1061520 MtrunA17_Chr7g0252031 31.034 261 161 9 16 265 35 287 4.37e-17 79.3
Msa1061520 MtrunA17_Chr4g0044131 28.958 259 164 8 16 265 8 255 9.69e-17 77.8
Msa1061520 MtrunA17_Chr6g0459261 28.462 260 164 7 16 264 25 273 2.78e-16 76.6
Msa1061520 MtrunA17_Chr6g0459281 28.148 270 179 8 1 264 1 261 3.01e-16 76.3
Msa1061520 MtrunA17_Chr4g0025981 28.063 253 171 6 17 266 42 286 3.45e-16 77.0
Msa1061520 MtrunA17_Chr7g0244061 29.520 271 165 9 16 265 29 294 7.46e-16 75.9
Msa1061520 MtrunA17_Chr1g0191751 26.070 257 173 7 16 263 101 349 1.05e-15 75.9
Msa1061520 MtrunA17_Chr7g0272961 26.154 260 175 7 16 266 40 291 1.52e-15 74.7
Msa1061520 MtrunA17_Chr4g0040371 28.244 262 167 7 16 265 19 271 5.82e-15 73.2
Msa1061520 MtrunA17_Chr8g0355281 29.557 203 127 7 16 206 69 267 8.91e-15 73.2
Msa1061520 MtrunA17_Chr4g0044111 27.863 262 183 5 7 266 4 261 1.28e-14 72.0
Msa1061520 MtrunA17_Chr7g0266981 27.863 262 183 5 7 266 4 261 1.58e-14 71.6
Msa1061520 MtrunA17_Chr6g0459271 28.235 255 171 7 16 264 13 261 1.94e-13 68.6
Msa1061520 MtrunA17_Chr7g0268591 28.195 266 161 7 16 265 33 284 4.36e-13 67.8
Msa1061520 MtrunA17_Chr6g0459331 27.165 254 175 7 16 264 13 261 1.32e-12 66.2
Msa1061520 MtrunA17_Chr3g0131521 33.784 148 95 3 12 158 28 173 4.23e-12 65.1
Msa1061520 MtrunA17_Chr7g0267011 28.125 192 125 5 16 201 8 192 5.96e-12 63.2
Msa1061520 MtrunA17_Chr7g0267001 27.273 253 158 8 16 265 8 237 7.05e-12 63.9
Msa1061520 MtrunA17_Chr7g0266891 26.482 253 180 5 16 266 7 255 1.15e-11 63.5
Msa1061520 MtrunA17_Chr8g0386201 28.634 227 152 7 15 234 44 267 1.59e-11 63.5
Msa1061520 MtrunA17_Chr1g0160511 34.228 149 93 4 12 158 33 178 2.81e-11 62.8
Msa1061520 MtrunA17_Chr1g0171831 23.810 252 178 7 16 256 14 262 7.51e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061520 AT5G06060.1 57.031 256 106 1 11 266 4 255 2.95e-107 311
Msa1061520 AT1G07440.1 55.642 257 109 1 10 266 6 257 2.78e-102 299
Msa1061520 AT2G29290.2 54.297 256 113 1 11 266 2 253 1.02e-98 290
Msa1061520 AT2G29360.1 54.135 266 118 1 1 266 1 262 1.52e-98 290
Msa1061520 AT2G29340.2 53.906 256 114 2 11 266 2 253 1.64e-97 286
Msa1061520 AT2G29300.1 54.023 261 107 3 11 266 2 254 2.37e-97 286
Msa1061520 AT2G29340.1 53.906 256 114 2 11 266 2 253 4.68e-97 287
Msa1061520 AT2G30670.1 53.906 256 114 2 11 266 2 253 4.82e-97 285
Msa1061520 AT2G29320.1 55.344 262 103 4 11 266 7 260 6.15e-97 285
Msa1061520 AT2G29300.2 54.231 260 106 3 11 265 2 253 3.67e-96 284
Msa1061520 AT2G29260.1 53.333 255 115 1 12 266 64 314 4.30e-96 285
Msa1061520 AT2G29330.1 54.297 256 113 2 11 266 2 253 9.48e-96 282
Msa1061520 AT2G29150.1 54.135 266 117 3 1 266 1 261 2.78e-95 281
Msa1061520 AT2G29370.1 54.615 260 113 2 8 266 7 262 6.02e-95 280
Msa1061520 AT2G29310.1 53.906 256 114 2 11 266 2 253 1.12e-94 279
Msa1061520 AT2G29350.1 54.475 257 112 1 10 266 9 260 1.78e-94 279
Msa1061520 AT1G07450.1 53.125 256 113 3 12 266 4 253 6.70e-93 275
Msa1061520 AT2G29320.2 53.750 240 98 3 32 266 11 242 2.74e-85 255
Msa1061520 AT2G29290.1 52.137 234 108 1 33 266 7 236 1.38e-84 253
Msa1061520 AT2G29310.2 51.915 235 109 2 32 266 21 251 1.10e-80 244
Msa1061520 AT2G29340.3 55.000 200 90 0 11 210 2 201 1.12e-77 234
Msa1061520 AT2G29340.4 55.000 200 90 0 11 210 2 201 1.12e-77 234
Msa1061520 AT2G29350.3 52.212 226 103 1 41 266 2 222 3.16e-77 234
Msa1061520 AT2G29320.3 58.462 195 79 2 11 203 7 201 6.86e-77 232
Msa1061520 AT2G29350.2 57.653 196 83 0 10 205 9 204 5.87e-76 230
Msa1061520 AT2G29310.3 54.000 200 92 0 11 210 2 201 6.10e-74 224
Msa1061520 AT1G07440.2 57.927 164 69 0 10 173 6 169 4.23e-66 203
Msa1061520 AT2G29310.4 51.397 179 87 0 32 210 21 199 8.98e-60 188
Msa1061520 AT2G29170.1 63.542 96 34 1 8 102 7 102 1.46e-38 131
Msa1061520 AT3G03980.1 34.815 270 159 4 7 264 5 269 4.90e-36 129
Msa1061520 AT5G18210.1 34.749 259 154 6 15 264 7 259 3.96e-32 119
Msa1061520 AT4G13180.1 34.496 258 155 6 16 266 13 263 6.04e-30 113
Msa1061520 AT5G18210.2 33.716 261 145 7 15 266 7 248 1.54e-28 110
Msa1061520 AT3G04000.1 34.317 271 158 7 7 263 5 269 3.09e-26 103
Msa1061520 AT4G05530.1 32.400 250 160 5 16 264 9 250 4.18e-26 103
Msa1061520 AT1G24360.1 31.474 251 155 8 22 266 80 319 7.52e-24 98.6
Msa1061520 AT3G05260.1 30.798 263 158 7 16 266 37 287 2.41e-22 94.0
Msa1061520 AT1G54870.2 28.405 257 167 7 16 263 84 332 5.69e-22 93.6
Msa1061520 AT1G54870.1 28.405 257 167 7 16 263 82 330 6.79e-22 93.6
Msa1061520 AT3G12800.1 26.996 263 168 7 16 264 10 262 1.52e-20 89.4
Msa1061520 AT3G03330.1 30.457 197 132 3 12 203 37 233 4.66e-20 88.2
Msa1061520 AT3G55290.2 28.679 265 164 9 16 266 17 270 1.35e-18 83.6
Msa1061520 AT3G55290.1 28.679 265 164 9 16 266 18 271 1.37e-18 83.6
Msa1061520 AT3G26760.1 28.519 270 172 7 9 265 29 290 3.10e-17 80.1
Msa1061520 AT1G63380.3 26.744 258 179 8 16 266 15 269 2.05e-16 77.4
Msa1061520 AT3G42960.1 31.461 267 161 10 11 265 5 261 2.17e-16 77.4
Msa1061520 AT1G63380.4 26.744 258 179 8 16 266 19 273 2.28e-16 77.4
Msa1061520 AT1G63380.1 26.744 258 179 8 16 266 17 271 2.39e-16 77.4
Msa1061520 AT1G63380.2 26.744 258 179 8 16 266 22 276 2.58e-16 77.4
Msa1061520 AT3G55310.1 28.077 260 172 9 16 266 17 270 3.60e-16 76.6
Msa1061520 AT1G62610.1 26.744 258 179 8 16 266 14 268 7.39e-16 75.9
Msa1061520 AT1G62610.3 26.744 258 179 8 16 266 15 269 7.48e-16 75.9
Msa1061520 AT1G62610.4 26.744 258 179 8 16 266 19 273 7.84e-16 75.9
Msa1061520 AT1G62610.2 26.744 258 179 8 16 266 13 267 8.90e-16 75.5
Msa1061520 AT3G06060.1 27.273 209 143 3 16 220 37 240 1.01e-15 76.3
Msa1061520 AT3G51680.1 27.758 281 182 7 1 265 20 295 1.17e-15 75.5
Msa1061520 AT3G06060.2 27.273 209 143 3 16 220 54 257 1.19e-15 75.9
Msa1061520 AT5G50590.2 29.293 198 124 7 16 208 45 231 1.52e-15 74.7
Msa1061520 AT5G50690.2 29.293 198 124 7 16 208 45 231 1.52e-15 74.7
Msa1061520 AT3G46170.1 27.099 262 172 8 16 266 26 279 2.31e-15 74.7
Msa1061520 AT5G50590.1 29.293 198 124 7 16 208 45 231 3.31e-15 74.3
Msa1061520 AT5G50690.1 29.293 198 124 7 16 208 45 231 3.31e-15 74.3
Msa1061520 AT3G03350.2 31.461 178 101 5 36 204 188 353 4.13e-15 74.7
Msa1061520 AT5G04900.1 30.102 196 122 7 22 206 83 274 5.26e-15 74.3
Msa1061520 AT4G03140.1 27.734 256 175 7 16 265 78 329 1.60e-14 72.8
Msa1061520 AT2G47140.1 27.519 258 171 7 16 266 6 254 4.40e-14 70.5
Msa1061520 AT4G13250.1 28.293 205 126 4 22 206 165 368 7.55e-14 71.2
Msa1061520 AT3G26770.1 29.167 264 162 10 16 265 41 293 8.88e-14 70.5
Msa1061520 AT3G47350.2 27.854 219 143 8 15 226 43 253 1.07e-13 70.1
Msa1061520 AT3G47350.1 27.854 219 143 8 15 226 43 253 1.13e-13 70.1
Msa1061520 AT5G65205.1 30.168 179 118 4 22 199 12 184 1.81e-13 69.3
Msa1061520 AT2G17845.1 22.901 262 186 7 16 266 47 303 5.51e-13 68.2
Msa1061520 AT5G10050.1 27.895 190 130 4 22 210 11 194 1.37e-12 66.6
Msa1061520 AT3G29260.1 28.571 266 157 9 16 266 6 253 4.15e-12 65.1
Msa1061520 AT1G52340.1 30.075 266 162 9 16 265 18 275 8.57e-12 64.3
Msa1061520 AT1G49670.1 31.527 203 124 8 18 207 6 206 8.87e-12 65.5
Msa1061520 AT1G49670.2 31.527 203 124 8 18 207 6 206 8.90e-12 65.5
Msa1061520 AT4G13250.2 27.805 205 125 5 22 206 165 366 1.18e-11 64.7
Msa1061520 AT5G19200.1 25.500 200 140 3 16 211 35 229 1.57e-11 63.9
Msa1061520 AT5G50700.1 29.146 199 128 8 15 207 44 235 4.79e-11 62.8
Msa1061520 AT5G50600.1 29.146 199 128 8 15 207 44 235 4.79e-11 62.8

Find 61 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAGAGTTAGCAGAATT+TGG 0.185342 7_2:+51054996 Msa1061520:CDS
CCATTCCAATGCTAAGTTCT+TGG 0.203591 7_2:-51056383 None:intergenic
ATAATTAAAATTACCTTTAG+AGG 0.208184 7_2:-51056252 None:intergenic
GTATACATATCCTCAATTTC+TGG 0.238398 7_2:+51056194 Msa1061520:CDS
TGTTGTCTTATTTGTTGTCT+TGG 0.272453 7_2:+51057092 Msa1061520:three_prime_UTR
ACCTGTGATGACCTTACTTT+TGG 0.297664 7_2:+51056444 Msa1061520:CDS
GATCAAAGATGGTCACTAAA+AGG 0.312455 7_2:+51054819 Msa1061520:CDS
TTAACAAATGTTTGAAAGAA+TGG 0.322643 7_2:+51055057 Msa1061520:CDS
GTATTATCTAAGATGGGTTT+AGG 0.353458 7_2:-51056068 None:intergenic
ACTTATGGCAACAAAGATAA+TGG 0.363091 7_2:-51057000 None:intergenic
TTCATCAGTATTATCTAAGA+TGG 0.370033 7_2:-51056075 None:intergenic
GTTCTTGGCGCATTGATTCA+TGG 0.382444 7_2:-51056368 None:intergenic
GGAATGACAGCTCTAGTAAC+TGG 0.387510 7_2:+51054840 Msa1061520:CDS
AACTGTTAGGTAAACAATGC+TGG 0.396239 7_2:+51056035 Msa1061520:intron
ATGGTAACCAGACACAAAAT+TGG 0.420948 7_2:-51056120 None:intergenic
TCTGTTTATGCAGCCTCTAA+AGG 0.433962 7_2:+51056239 Msa1061520:CDS
CAAAGTTATGATTGTGTGGT+TGG 0.434336 7_2:-51054675 None:intergenic
GGTGTGCAAGTTGGCACAAA+TGG 0.434463 7_2:-51056139 None:intergenic
ATGCATGTATGTTTAATGTT+AGG 0.442001 7_2:+51057119 Msa1061520:three_prime_UTR
GAAGATATAACAACTACAAT+TGG 0.449713 7_2:+51056095 Msa1061520:CDS
ACAGTAGCTTCAATCTTTCA+AGG 0.454086 7_2:+51055155 Msa1061520:CDS
CGTGCTAATGTTGTGGCACC+TGG 0.457313 7_2:+51056421 Msa1061520:CDS
CATAGCATTCTCCAAAAGTA+AGG 0.480973 7_2:-51056455 None:intergenic
ATCAATCAGGTATGCAATTG+TGG 0.492239 7_2:+51054977 Msa1061520:intron
ACTGGTGGAACCCGAGGCAT+AGG 0.498705 7_2:+51054858 Msa1061520:CDS
CAAGAACTTAGCATTGGAAT+GGG 0.501708 7_2:+51056384 Msa1061520:CDS
CCAAGAACTTAGCATTGGAA+TGG 0.503939 7_2:+51056383 Msa1061520:CDS
ACCAATGCTGATATATCCTT+AGG 0.521567 7_2:-51056846 None:intergenic
CAAACACCTAGTGGTCGGAT+TGG 0.521725 7_2:+51056819 Msa1061520:CDS
GAAAACTGACCCTATGCCTC+GGG 0.527523 7_2:-51054868 None:intergenic
TCATCAGTATTATCTAAGAT+GGG 0.531379 7_2:-51056074 None:intergenic
ACCTAAGGATATATCAGCAT+TGG 0.534231 7_2:+51056845 Msa1061520:CDS
AGTAAGGTCATCACAGGTCC+AGG 0.537665 7_2:-51056439 None:intergenic
ACTGTTAGGTAAACAATGCT+GGG 0.538511 7_2:+51056036 Msa1061520:intron
TGTTCTTAATCAGTGTGACT+TGG 0.539874 7_2:-51054760 None:intergenic
AGCTTTGAGACCAGAAATTG+AGG 0.544915 7_2:-51056204 None:intergenic
TCCAAAAGTAAGGTCATCAC+AGG 0.548783 7_2:-51056445 None:intergenic
GCTGCATAAACAGAAACAAA+AGG 0.550367 7_2:-51056230 None:intergenic
TGGTCGGATTGGAGAACCTA+AGG 0.554317 7_2:+51056830 Msa1061520:CDS
GGTTCTCCAATCCGACCACT+AGG 0.556909 7_2:-51056825 None:intergenic
TTGAAAGAATGGAAAGGCAA+AGG 0.557601 7_2:+51055068 Msa1061520:CDS
ATGCGCCAAGAACTTAGCAT+TGG 0.567165 7_2:+51056378 Msa1061520:CDS
CCAACTGCATCACACATCAC+TGG 0.570626 7_2:+51056885 Msa1061520:CDS
CTTAGCATTGGAATGGGCAA+AGG 0.572011 7_2:+51056390 Msa1061520:CDS
AGAAAACTGACCCTATGCCT+CGG 0.572975 7_2:-51054869 None:intergenic
GCAGCTTCAAAGATCAAAGA+TGG 0.579135 7_2:+51054808 Msa1061520:CDS
AATTCAAAGTTATGATTGTG+TGG 0.580793 7_2:-51054679 None:intergenic
TAATATTCGTGCTAATGTTG+TGG 0.582808 7_2:+51056414 Msa1061520:CDS
GGACAAATTATAGCAGCAGA+TGG 0.590646 7_2:+51056906 Msa1061520:CDS
TTTCTCAAACACCTAGTGGT+CGG 0.609517 7_2:+51056814 Msa1061520:CDS
CAAATTATAGCAGCAGATGG+AGG 0.609645 7_2:+51056909 Msa1061520:CDS
CTGGTGGAACCCGAGGCATA+GGG 0.613722 7_2:+51054859 Msa1061520:CDS
CTCGACAACATTATCCACTC+CGG 0.615069 7_2:-51056784 None:intergenic
GTATGTTTAATGTTAGGTGA+TGG 0.622006 7_2:+51057125 Msa1061520:three_prime_UTR
CTAGTAACTGGTGGAACCCG+AGG 0.629591 7_2:+51054852 Msa1061520:CDS
CGGAGTGGATAATGTTGTCG+AGG 0.633007 7_2:+51056785 Msa1061520:CDS
CCAGTGATGTGTGATGCAGT+TGG 0.638780 7_2:-51056885 None:intergenic
ATAGTTTCTCAAACACCTAG+TGG 0.647198 7_2:+51056810 Msa1061520:CDS
AAATGTTTGAAAGAATGGAA+AGG 0.648117 7_2:+51055062 Msa1061520:CDS
ATAGAAATTAGATGCCGGAG+TGG 0.664921 7_2:+51056770 Msa1061520:intron
ATGACAGCTCTAGTAACTGG+TGG 0.670365 7_2:+51054843 Msa1061520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAAAGTTTTTTTTGAA+AGG + chr7_2:51055351-51055370 Msa1061520:intron 10.0%
!! TTATTAAAGTTATTAAGTTT+CGG + chr7_2:51055379-51055398 Msa1061520:intron 10.0%
!!! TAATTTTTTTATATTTTTGG+TGG + chr7_2:51055807-51055826 Msa1061520:intron 10.0%
!!! TAACAAAAAAAACATATTTT+TGG + chr7_2:51055843-51055862 Msa1061520:intron 10.0%
!! TATTTGAACAAATAAAAAGT+TGG - chr7_2:51054715-51054734 None:intergenic 15.0%
!!! TAATCATTCAAATTTGATTT+TGG + chr7_2:51055202-51055221 Msa1061520:intron 15.0%
!! TAATTAGACAAAGAAAAAAA+AGG - chr7_2:51055421-51055440 None:intergenic 15.0%
!! ATAATTAAAATTACCTTTAG+AGG - chr7_2:51056255-51056274 None:intergenic 15.0%
!! ATAGAAAAATACAAAACTTA+TGG - chr7_2:51057018-51057037 None:intergenic 15.0%
!! CTGATTAAGAACAAAAAATA+TGG + chr7_2:51054770-51054789 Msa1061520:exon 20.0%
!!! CTTTTTTTGAATAATCAATC+AGG + chr7_2:51054964-51054983 Msa1061520:intron 20.0%
!! TTAACAAATGTTTGAAAGAA+TGG + chr7_2:51055057-51055076 Msa1061520:CDS 20.0%
!!! AAATTTTTAAAAACCCACAA+TGG + chr7_2:51055324-51055343 Msa1061520:intron 20.0%
!! CTTTAATAAAATACCATTGT+GGG - chr7_2:51055340-51055359 None:intergenic 20.0%
!! ACTTTAATAAAATACCATTG+TGG - chr7_2:51055341-51055360 None:intergenic 20.0%
!!! CAGTTGACTTTATTATAAAA+TGG - chr7_2:51055637-51055656 None:intergenic 20.0%
!!! ATTTTTTTTTAGAGGATAGT+AGG - chr7_2:51055778-51055797 None:intergenic 20.0%
!!! TTAGCAAGATTTTTTTTTAG+AGG - chr7_2:51055786-51055805 None:intergenic 20.0%
!! TATGATTTATTCACATAGTT+TGG + chr7_2:51056479-51056498 Msa1061520:intron 20.0%
!! AGAATACAAAAGTTCAAATT+AGG - chr7_2:51056700-51056719 None:intergenic 20.0%
!!! TTTTTATAGAAATTAGATGC+CGG + chr7_2:51056765-51056784 Msa1061520:intron 20.0%
! AATTCAAAGTTATGATTGTG+TGG - chr7_2:51054682-51054701 None:intergenic 25.0%
! AAATGTTTGAAAGAATGGAA+AGG + chr7_2:51055062-51055081 Msa1061520:CDS 25.0%
! TTATACAATCAAAACAAAGC+AGG + chr7_2:51055270-51055289 Msa1061520:intron 25.0%
! TATACAATCAAAACAAAGCA+GGG + chr7_2:51055271-51055290 Msa1061520:intron 25.0%
! CAATACATTGTAATATGCAT+TGG - chr7_2:51055513-51055532 None:intergenic 25.0%
!!! CTCTTTTTAATTGTACCATT+GGG + chr7_2:51055868-51055887 Msa1061520:intron 25.0%
! ATTGAATTTCTCAAACTGTT+AGG + chr7_2:51056022-51056041 Msa1061520:intron 25.0%
!! TCATCAGTATTATCTAAGAT+GGG - chr7_2:51056077-51056096 None:intergenic 25.0%
! TTCATCAGTATTATCTAAGA+TGG - chr7_2:51056078-51056097 None:intergenic 25.0%
! GAAGATATAACAACTACAAT+TGG + chr7_2:51056095-51056114 Msa1061520:CDS 25.0%
!!! ATCCAGATGCTTTTAAAAAA+GGG - chr7_2:51056163-51056182 None:intergenic 25.0%
!!! TATCCAGATGCTTTTAAAAA+AGG - chr7_2:51056164-51056183 None:intergenic 25.0%
!!! TTTTTAAAAGCATCTGGATA+TGG + chr7_2:51056164-51056183 Msa1061520:CDS 25.0%
! TCATATTATACCCTTTAACT+TGG + chr7_2:51056281-51056300 Msa1061520:intron 25.0%
!!! ATTGCTATTTCTATCTATGT+AGG + chr7_2:51056343-51056362 Msa1061520:intron 25.0%
!!! ACGCAACTAATTTTTTTGAA+GGG - chr7_2:51056617-51056636 None:intergenic 25.0%
! ATGCATGTATGTTTAATGTT+AGG + chr7_2:51057119-51057138 Msa1061520:three_prime_UTR 25.0%
TGATCAACGTGAAAAATTGA+TGG + chr7_2:51055130-51055149 Msa1061520:CDS 30.0%
ATACAATCAAAACAAAGCAG+GGG + chr7_2:51055272-51055291 Msa1061520:intron 30.0%
! TGTCTAATTAACTAGCTTAG+TGG + chr7_2:51055431-51055450 Msa1061520:intron 30.0%
AACCCTTAAAGGTGAATAAA+TGG + chr7_2:51055464-51055483 Msa1061520:intron 30.0%
ACCCTTAAAGGTGAATAAAT+GGG + chr7_2:51055465-51055484 Msa1061520:intron 30.0%
TCCCATTTATTCACCTTTAA+GGG - chr7_2:51055469-51055488 None:intergenic 30.0%
TTCCCATTTATTCACCTTTA+AGG - chr7_2:51055470-51055489 None:intergenic 30.0%
!!! GATTTAGTTTTGTTGAGACA+TGG + chr7_2:51055656-51055675 Msa1061520:intron 30.0%
!! GCTCTTTTTAATTGTACCAT+TGG + chr7_2:51055867-51055886 Msa1061520:intron 30.0%
! GTATTATCTAAGATGGGTTT+AGG - chr7_2:51056071-51056090 None:intergenic 30.0%
GTATACATATCCTCAATTTC+TGG + chr7_2:51056194-51056213 Msa1061520:CDS 30.0%
TAATATTCGTGCTAATGTTG+TGG + chr7_2:51056414-51056433 Msa1061520:CDS 30.0%
TTATTCACATAGTTTGGCAA+AGG + chr7_2:51056485-51056504 Msa1061520:intron 30.0%
!!! GACGCAACTAATTTTTTTGA+AGG - chr7_2:51056618-51056637 None:intergenic 30.0%
CTAAATTGCCATGTCTAATT+TGG + chr7_2:51056674-51056693 Msa1061520:intron 30.0%
AAATTAGGCCAAATTAGACA+TGG - chr7_2:51056685-51056704 None:intergenic 30.0%
ACTTATGGCAACAAAGATAA+TGG - chr7_2:51057003-51057022 None:intergenic 30.0%
!! TGTTGTCTTATTTGTTGTCT+TGG + chr7_2:51057092-51057111 Msa1061520:three_prime_UTR 30.0%
GTATGTTTAATGTTAGGTGA+TGG + chr7_2:51057125-51057144 Msa1061520:three_prime_UTR 30.0%
CAAAGTTATGATTGTGTGGT+TGG - chr7_2:51054678-51054697 None:intergenic 35.0%
TGTTCTTAATCAGTGTGACT+TGG - chr7_2:51054763-51054782 None:intergenic 35.0%
GATCAAAGATGGTCACTAAA+AGG + chr7_2:51054819-51054838 Msa1061520:CDS 35.0%
ATCAATCAGGTATGCAATTG+TGG + chr7_2:51054977-51054996 Msa1061520:intron 35.0%
TTGAAAGAATGGAAAGGCAA+AGG + chr7_2:51055068-51055087 Msa1061520:CDS 35.0%
! GCAAAGGATTTTGTGTAACA+GGG + chr7_2:51055084-51055103 Msa1061520:CDS 35.0%
ACAGTAGCTTCAATCTTTCA+AGG + chr7_2:51055155-51055174 Msa1061520:CDS 35.0%
! TAATTAACTAGCTTAGTGGC+CGG + chr7_2:51055435-51055454 Msa1061520:intron 35.0%
!! ACCTTTAAGGGTTGATTTTC+CGG - chr7_2:51055457-51055476 None:intergenic 35.0%
AATGCTAACAAGTGCTCTTA+GGG - chr7_2:51055696-51055715 None:intergenic 35.0%
AAATGCTAACAAGTGCTCTT+AGG - chr7_2:51055697-51055716 None:intergenic 35.0%
AACTGTTAGGTAAACAATGC+TGG + chr7_2:51056035-51056054 Msa1061520:intron 35.0%
ACTGTTAGGTAAACAATGCT+GGG + chr7_2:51056036-51056055 Msa1061520:intron 35.0%
! ATTGGTACCAATTTTGTGTC+TGG + chr7_2:51056113-51056132 Msa1061520:CDS 35.0%
ATGGTAACCAGACACAAAAT+TGG - chr7_2:51056123-51056142 None:intergenic 35.0%
! TTAAAAAAGGGTGTGCAAGT+TGG - chr7_2:51056151-51056170 None:intergenic 35.0%
!!! CACCCTTTTTTAAAAGCATC+TGG + chr7_2:51056158-51056177 Msa1061520:CDS 35.0%
GCTGCATAAACAGAAACAAA+AGG - chr7_2:51056233-51056252 None:intergenic 35.0%
CTGCAAAGTTCCAAGTTAAA+GGG - chr7_2:51056294-51056313 None:intergenic 35.0%
TCTGCAAAGTTCCAAGTTAA+AGG - chr7_2:51056295-51056314 None:intergenic 35.0%
! CAAGAACTTAGCATTGGAAT+GGG + chr7_2:51056384-51056403 Msa1061520:CDS 35.0%
CATAGCATTCTCCAAAAGTA+AGG - chr7_2:51056458-51056477 None:intergenic 35.0%
!! CTTACTTTTGGAGAATGCTA+TGG + chr7_2:51056456-51056475 Msa1061520:CDS 35.0%
ATAGTTTCTCAAACACCTAG+TGG + chr7_2:51056810-51056829 Msa1061520:CDS 35.0%
ACCTAAGGATATATCAGCAT+TGG + chr7_2:51056845-51056864 Msa1061520:CDS 35.0%
ACCAATGCTGATATATCCTT+AGG - chr7_2:51056849-51056868 None:intergenic 35.0%
GCAGCTTCAAAGATCAAAGA+TGG + chr7_2:51054808-51054827 Msa1061520:CDS 40.0%
GTGGAAGAGTTAGCAGAATT+TGG + chr7_2:51054996-51055015 Msa1061520:CDS 40.0%
! GGCAAAGGATTTTGTGTAAC+AGG + chr7_2:51055083-51055102 Msa1061520:CDS 40.0%
! CAAGTTGCAACTTTTTGACG+GGG - chr7_2:51055898-51055917 None:intergenic 40.0%
! GCAAGTTGCAACTTTTTGAC+GGG - chr7_2:51055899-51055918 None:intergenic 40.0%
! CGCAAGTTGCAACTTTTTGA+CGG - chr7_2:51055900-51055919 None:intergenic 40.0%
!! AGCTTTGAGACCAGAAATTG+AGG - chr7_2:51056207-51056226 None:intergenic 40.0%
TCTGTTTATGCAGCCTCTAA+AGG + chr7_2:51056239-51056258 Msa1061520:CDS 40.0%
CCATTCCAATGCTAAGTTCT+TGG - chr7_2:51056386-51056405 None:intergenic 40.0%
! CCAAGAACTTAGCATTGGAA+TGG + chr7_2:51056383-51056402 Msa1061520:CDS 40.0%
! ACCTGTGATGACCTTACTTT+TGG + chr7_2:51056444-51056463 Msa1061520:CDS 40.0%
TCCAAAAGTAAGGTCATCAC+AGG - chr7_2:51056448-51056467 None:intergenic 40.0%
ATAGAAATTAGATGCCGGAG+TGG + chr7_2:51056770-51056789 Msa1061520:intron 40.0%
TTTCTCAAACACCTAGTGGT+CGG + chr7_2:51056814-51056833 Msa1061520:CDS 40.0%
GGACAAATTATAGCAGCAGA+TGG + chr7_2:51056906-51056925 Msa1061520:CDS 40.0%
CAAATTATAGCAGCAGATGG+AGG + chr7_2:51056909-51056928 Msa1061520:CDS 40.0%
! GGAATGACAGCTCTAGTAAC+TGG + chr7_2:51054840-51054859 Msa1061520:CDS 45.0%
! ATGACAGCTCTAGTAACTGG+TGG + chr7_2:51054843-51054862 Msa1061520:CDS 45.0%
AGAAAACTGACCCTATGCCT+CGG - chr7_2:51054872-51054891 None:intergenic 45.0%
GCCGGAAAATCAACCCTTAA+AGG + chr7_2:51055453-51055472 Msa1061520:intron 45.0%
!! GTTCTTGGCGCATTGATTCA+TGG - chr7_2:51056371-51056390 None:intergenic 45.0%
ATGCGCCAAGAACTTAGCAT+TGG + chr7_2:51056378-51056397 Msa1061520:CDS 45.0%
! CTTAGCATTGGAATGGGCAA+AGG + chr7_2:51056390-51056409 Msa1061520:CDS 45.0%
CTTCTCAATATGTGAGCGCA+TGG - chr7_2:51056516-51056535 None:intergenic 45.0%
CATGCGCTCACATATTGAGA+AGG + chr7_2:51056514-51056533 Msa1061520:intron 45.0%
CTCGACAACATTATCCACTC+CGG - chr7_2:51056787-51056806 None:intergenic 45.0%
!!! AACTAATTTTTTTATATTTT+TGG + chr7_2:51055804-51055823 Msa1061520:intron 5.0%
GAAAACTGACCCTATGCCTC+GGG - chr7_2:51054871-51054890 None:intergenic 50.0%
!!! ACAAAGCAGGGGCTAGCTTT+TGG + chr7_2:51055283-51055302 Msa1061520:intron 50.0%
! TTGCAACTTTTTGACGGGGC+TGG - chr7_2:51055894-51055913 None:intergenic 50.0%
! GGTGTGCAAGTTGGCACAAA+TGG - chr7_2:51056142-51056161 None:intergenic 50.0%
AGTAAGGTCATCACAGGTCC+AGG - chr7_2:51056442-51056461 None:intergenic 50.0%
CGGAGTGGATAATGTTGTCG+AGG + chr7_2:51056785-51056804 Msa1061520:CDS 50.0%
CAAACACCTAGTGGTCGGAT+TGG + chr7_2:51056819-51056838 Msa1061520:CDS 50.0%
! TGGTCGGATTGGAGAACCTA+AGG + chr7_2:51056830-51056849 Msa1061520:CDS 50.0%
CCAGTGATGTGTGATGCAGT+TGG - chr7_2:51056888-51056907 None:intergenic 50.0%
CCAACTGCATCACACATCAC+TGG + chr7_2:51056885-51056904 Msa1061520:CDS 50.0%
CTAGTAACTGGTGGAACCCG+AGG + chr7_2:51054852-51054871 Msa1061520:CDS 55.0%
CGTGCTAATGTTGTGGCACC+TGG + chr7_2:51056421-51056440 Msa1061520:CDS 55.0%
GGTTCTCCAATCCGACCACT+AGG - chr7_2:51056828-51056847 None:intergenic 55.0%
ACTGGTGGAACCCGAGGCAT+AGG + chr7_2:51054858-51054877 Msa1061520:CDS 60.0%
CTGGTGGAACCCGAGGCATA+GGG + chr7_2:51054859-51054878 Msa1061520:CDS 60.0%
!!! TTTTGACGGGGCTGGCCCAA+TGG - chr7_2:51055886-51055905 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 51054607 51057154 51054607 ID=Msa1061520;Name=Msa1061520
chr7_2 mRNA 51054607 51057154 51054607 ID=Msa1061520-mRNA-1;Parent=Msa1061520;Name=Msa1061520-mRNA-1;_AED=0.36;_eAED=0.36;_QI=182|1|1|1|0.8|0.66|6|190|266
chr7_2 exon 51054607 51054880 51054607 ID=Msa1061520-mRNA-1:exon:9247;Parent=Msa1061520-mRNA-1
chr7_2 exon 51054986 51055193 51054986 ID=Msa1061520-mRNA-1:exon:9248;Parent=Msa1061520-mRNA-1
chr7_2 exon 51056044 51056260 51056044 ID=Msa1061520-mRNA-1:exon:9249;Parent=Msa1061520-mRNA-1
chr7_2 exon 51056365 51056477 51056365 ID=Msa1061520-mRNA-1:exon:9250;Parent=Msa1061520-mRNA-1
chr7_2 exon 51056774 51057070 51056774 ID=Msa1061520-mRNA-1:exon:9251;Parent=Msa1061520-mRNA-1
chr7_2 exon 51057091 51057154 51057091 ID=Msa1061520-mRNA-1:exon:9252;Parent=Msa1061520-mRNA-1
chr7_2 five_prime_UTR 51054607 51054788 51054607 ID=Msa1061520-mRNA-1:five_prime_utr;Parent=Msa1061520-mRNA-1
chr7_2 CDS 51054789 51054880 51054789 ID=Msa1061520-mRNA-1:cds;Parent=Msa1061520-mRNA-1
chr7_2 CDS 51054986 51055193 51054986 ID=Msa1061520-mRNA-1:cds;Parent=Msa1061520-mRNA-1
chr7_2 CDS 51056044 51056260 51056044 ID=Msa1061520-mRNA-1:cds;Parent=Msa1061520-mRNA-1
chr7_2 CDS 51056365 51056477 51056365 ID=Msa1061520-mRNA-1:cds;Parent=Msa1061520-mRNA-1
chr7_2 CDS 51056774 51056944 51056774 ID=Msa1061520-mRNA-1:cds;Parent=Msa1061520-mRNA-1
chr7_2 three_prime_UTR 51056945 51057070 51056945 ID=Msa1061520-mRNA-1:three_prime_utr;Parent=Msa1061520-mRNA-1
chr7_2 three_prime_UTR 51057091 51057154 51057091 ID=Msa1061520-mRNA-1:three_prime_utr;Parent=Msa1061520-mRNA-1
Gene Sequence

>Msa1061520

ATGGCAGAAACAAAGTTGAGCAGCTTCAAAGATCAAAGATGGTCACTAAAAGGAATGACAGCTCTAGTAACTGGTGGAACCCGAGGCATAGGGTATGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAAGTGTGTATATATGTTCACGAAATCAAGAAGATATTAACAAATGTTTGAAAGAATGGAAAGGCAAAGGATTTTGTGTAACAGGGTCAACTTGTGATTTATTATTGCGTGATCAACGTGAAAAATTGATGGAAACAGTAGCTTCAATCTTTCAAGGAAAACTCAATATTCTAGTAAACAATGCTGGGATATTTGCTCCTAAACCCATCTTAGATAATACTGATGAAGATATAACAACTACAATTGGTACCAATTTTGTGTCTGGTTACCATTTGTGCCAACTTGCACACCCTTTTTTAAAAGCATCTGGATATGGAAGCATAGTATACATATCCTCAATTTCTGGTCTCAAAGCTTTGCCTTTTGTTTCTGTTTATGCAGCCTCTAAAGGAGCCATGAATCAATGCGCCAAGAACTTAGCATTGGAATGGGCAAAGGATAATATTCGTGCTAATGTTGTGGCACCTGGACCTGTGATGACCTTACTTTTGGAGAATGCTATGAAATTAGATGCCGGAGTGGATAATGTTGTCGAGGATATAGTTTCTCAAACACCTAGTGGTCGGATTGGAGAACCTAAGGATATATCAGCATTGGTTGCTTTTCTTTGTCTTCCAACTGCATCACACATCACTGGACAAATTATAGCAGCAGATGGAGGCTTCACTATTTAA

Protein sequence

>Msa1061520

MAETKLSSFKDQRWSLKGMTALVTGGTRGIGYAIVEELAEFGASVYICSRNQEDINKCLKEWKGKGFCVTGSTCDLLLRDQREKLMETVASIFQGKLNILVNNAGIFAPKPILDNTDEDITTTIGTNFVSGYHLCQLAHPFLKASGYGSIVYISSISGLKALPFVSVYAASKGAMNQCAKNLALEWAKDNIRANVVAPGPVMTLLLENAMKLDAGVDNVVEDIVSQTPSGRIGEPKDISALVAFLCLPTASHITGQIIAADGGFTI*