AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1322680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322680 MtrunA17_Chr8g0355421 94.526 1023 56 0 1 1023 1 1023 0.0 1941
Msa1322680 MtrunA17_Chr1g0173111 63.143 1031 371 4 1 1023 1 1030 0.0 1333
Msa1322680 MtrunA17_Chr8g0382071 62.959 1034 365 5 4 1023 5 1034 0.0 1306
Msa1322680 MtrunA17_Chr5g0401211 53.085 1021 456 10 1 1005 1 1014 0.0 1036
Msa1322680 MtrunA17_Chr3g0134771 51.327 1017 482 7 1 1005 1 1016 0.0 996
Msa1322680 MtrunA17_Chr4g0020551 57.558 860 356 6 78 929 15 873 0.0 975
Msa1322680 MtrunA17_Chr4g0054021 51.538 943 441 5 72 1005 2 937 0.0 931
Msa1322680 MtrunA17_Chr4g0002331 42.483 1031 544 16 13 1007 66 1083 0.0 748
Msa1322680 MtrunA17_Chr2g0298871 41.917 1033 551 11 13 1005 46 1069 0.0 740
Msa1322680 MtrunA17_Chr6g0456201 40.760 974 528 17 68 1005 46 1006 0.0 673
Msa1322680 MtrunA17_Chr7g0260401 38.566 1032 583 16 15 1010 28 1044 0.0 632
Msa1322680 MtrunA17_Chr8g0340261 40.000 570 295 11 453 1005 2 541 1.53e-122 385
Msa1322680 MtrunA17_Chr8g0340271 42.308 390 206 8 87 463 69 452 1.04e-85 285
Msa1322680 MtrunA17_Chr8g0346461 26.927 1025 591 28 121 1001 28 1038 3.58e-85 297
Msa1322680 MtrunA17_Chr2g0334231 39.825 457 249 9 13 453 56 502 2.59e-83 279
Msa1322680 MtrunA17_Chr7g0263361 28.991 852 505 22 100 865 18 855 4.87e-80 283
Msa1322680 MtrunA17_Chr4g0005551 26.660 964 600 26 92 1005 61 967 2.12e-77 274
Msa1322680 MtrunA17_Chr5g0447521 26.854 890 571 19 152 1000 151 1001 1.17e-75 270
Msa1322680 MtrunA17_Chr3g0134951 28.274 817 499 20 126 874 23 820 1.48e-68 248
Msa1322680 MtrunA17_Chr4g0072131 26.287 719 441 20 112 820 24 663 1.12e-52 200
Msa1322680 MtrunA17_Chr2g0334221 39.189 296 158 7 481 759 44 334 1.74e-51 185
Msa1322680 MtrunA17_Chr1g0147981 26.052 737 449 26 97 820 24 677 1.62e-50 193
Msa1322680 MtrunA17_Chr8g0365021 25.921 706 433 22 126 820 104 730 1.28e-48 188
Msa1322680 MtrunA17_Chr2g0298031 25.670 709 432 22 126 820 39 666 2.37e-48 187
Msa1322680 MtrunA17_Chr3g0138931 25.313 719 448 21 112 820 21 660 7.84e-47 182
Msa1322680 MtrunA17_Chr1g0148031 25.174 719 449 20 112 820 21 660 7.91e-47 182
Msa1322680 MtrunA17_Chr2g0333721 24.681 705 447 19 126 821 32 661 7.64e-46 179
Msa1322680 MtrunA17_Chr2g0304941 25.035 711 437 24 126 821 35 664 4.51e-45 176
Msa1322680 MtrunA17_Chr4g0059961 24.549 721 455 21 112 821 25 667 4.71e-45 176
Msa1322680 MtrunA17_Chr4g0065481 24.583 720 452 22 112 820 22 661 2.88e-44 174
Msa1322680 MtrunA17_Chr8g0381711 24.198 810 500 26 199 963 89 829 1.87e-42 167
Msa1322680 MtrunA17_Chr8g0335291 23.404 705 461 17 126 821 36 670 5.99e-42 166
Msa1322680 MtrunA17_Chr2g0334201 47.590 166 86 1 843 1007 1 166 6.78e-41 149
Msa1322680 MtrunA17_Chr6g0452721 23.333 720 465 21 112 821 23 665 2.52e-39 158
Msa1322680 MtrunA17_Chr7g0276551 23.884 448 282 11 390 834 42 433 9.96e-31 130
Msa1322680 MtrunA17_Chr4g0020561 52.222 90 41 1 936 1023 1 90 4.84e-21 88.6
Msa1322680 MtrunA17_Chr2g0297051 32.044 181 92 5 639 818 821 971 2.64e-15 81.3
Msa1322680 MtrunA17_Chr2g0297051 27.477 222 152 5 233 451 476 691 4.52e-12 70.5
Msa1322680 MtrunA17_Chr4g0052521 32.402 179 90 5 639 816 789 937 5.77e-15 80.1
Msa1322680 MtrunA17_Chr2g0297871 27.083 240 131 10 638 872 356 556 1.07e-13 75.5
Msa1322680 MtrunA17_Chr8g0363911 25.117 426 211 18 393 725 363 773 1.29e-13 75.9
Msa1322680 MtrunA17_Chr8g0374391 31.098 164 84 3 639 802 35 169 1.61e-13 71.6
Msa1322680 MtrunA17_Chr8g0374331 31.098 164 84 3 639 802 42 176 1.68e-13 71.6
Msa1322680 MtrunA17_Chr4g0071991 26.540 211 117 6 635 845 512 684 1.25e-12 72.4
Msa1322680 MtrunA17_Chr3g0136331 27.602 221 149 5 244 460 359 572 3.67e-12 70.9
Msa1322680 MtrunA17_Chr4g0020541 53.448 58 26 1 1 57 1 58 4.57e-12 62.4
Msa1322680 MtrunA17_Chr8g0339181 31.319 182 89 4 628 802 741 893 3.90e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322680 AT3G57330.1 58.835 1030 408 7 1 1023 1 1021 0.0 1222
Msa1322680 AT2G41560.1 58.738 1030 412 7 1 1023 1 1024 0.0 1215
Msa1322680 AT3G57330.2 59.507 973 382 6 54 1023 3 966 0.0 1175
Msa1322680 AT2G41560.2 59.871 927 367 4 97 1023 1 922 0.0 1135
Msa1322680 AT2G41560.3 59.871 927 367 4 97 1023 1 922 0.0 1135
Msa1322680 AT2G41560.4 59.871 927 367 4 97 1023 1 922 0.0 1135
Msa1322680 AT4G37640.1 51.721 1017 476 8 1 1005 1 1014 0.0 1022
Msa1322680 AT2G22950.1 51.866 1018 474 8 1 1005 1 1015 0.0 1015
Msa1322680 AT1G27770.4 50.934 1017 487 6 1 1005 1 1017 0.0 996
Msa1322680 AT1G27770.1 50.934 1017 487 6 1 1005 1 1017 0.0 996
Msa1322680 AT1G27770.3 52.047 928 442 2 81 1005 27 954 0.0 945
Msa1322680 AT4G29900.1 42.172 1022 553 14 13 1005 37 1049 0.0 761
Msa1322680 AT4G29900.2 42.172 1022 553 14 13 1005 37 1049 0.0 761
Msa1322680 AT3G21180.1 42.341 1025 552 13 13 1007 51 1066 0.0 753
Msa1322680 AT5G57110.1 41.748 1030 558 12 6 1005 30 1047 0.0 751
Msa1322680 AT5G57110.3 41.748 1030 558 12 6 1005 30 1047 0.0 751
Msa1322680 AT5G57110.2 41.748 1030 558 12 6 1005 30 1047 0.0 751
Msa1322680 AT3G63380.1 40.318 1007 543 17 34 1007 27 1008 0.0 671
Msa1322680 AT3G22910.1 41.020 941 514 13 87 1005 81 1002 0.0 637
Msa1322680 AT1G27770.2 47.476 634 322 5 1 623 1 634 6.58e-179 546
Msa1322680 AT1G27770.2 57.929 309 130 0 697 1005 635 943 1.14e-115 379
Msa1322680 AT5G53010.1 32.567 1001 569 24 54 995 82 1035 2.51e-135 434
Msa1322680 AT5G53010.2 32.184 696 422 16 54 709 82 767 1.46e-91 310
Msa1322680 AT4G00900.2 27.852 1052 569 33 112 1001 14 1037 8.64e-87 302
Msa1322680 AT4G00900.1 27.852 1052 569 33 112 1001 14 1037 8.64e-87 302
Msa1322680 AT1G07670.2 28.708 836 506 21 117 874 36 859 4.07e-79 280
Msa1322680 AT1G07670.1 28.708 836 506 21 117 874 36 859 4.07e-79 280
Msa1322680 AT1G10130.1 29.182 819 496 19 126 878 23 823 5.85e-78 276
Msa1322680 AT1G07810.1 28.743 835 499 23 121 874 40 859 7.41e-78 277
Msa1322680 AT1G17260.1 24.650 714 460 18 112 820 27 667 6.39e-48 186
Msa1322680 AT1G80660.3 23.922 719 462 18 112 821 24 666 5.07e-47 182
Msa1322680 AT1G80660.4 23.922 719 462 18 112 821 24 666 5.62e-47 182
Msa1322680 AT1G80660.1 23.922 719 462 18 112 821 24 666 6.68e-47 182
Msa1322680 AT4G30190.1 25.450 723 442 23 112 820 19 658 7.84e-47 182
Msa1322680 AT1G80660.2 25.251 598 372 15 230 821 9 537 4.42e-46 179
Msa1322680 AT2G24520.3 24.893 703 444 21 126 820 14 640 6.59e-46 179
Msa1322680 AT2G24520.1 24.893 703 444 21 126 820 14 640 6.59e-46 179
Msa1322680 AT2G24520.2 24.893 703 444 21 126 820 77 703 1.14e-45 179
Msa1322680 AT3G60330.4 23.916 715 464 18 112 821 22 661 1.17e-45 179
Msa1322680 AT3G60330.3 23.916 715 464 18 112 821 22 661 1.17e-45 179
Msa1322680 AT3G60330.2 23.776 715 465 18 112 821 22 661 2.75e-45 177
Msa1322680 AT3G60330.1 23.776 715 465 18 112 821 22 661 2.75e-45 177
Msa1322680 AT5G57350.4 24.306 720 454 21 112 820 20 659 2.21e-44 174
Msa1322680 AT5G57350.2 24.306 720 454 21 112 820 20 659 2.21e-44 174
Msa1322680 AT5G57350.1 24.306 720 454 21 112 820 20 659 2.21e-44 174
Msa1322680 AT2G18960.1 25.957 601 360 18 230 820 133 658 6.47e-44 173
Msa1322680 AT2G18960.3 25.957 601 360 18 230 820 69 594 6.92e-44 172
Msa1322680 AT2G18960.2 25.957 601 360 18 230 820 69 594 6.92e-44 172
Msa1322680 AT5G62670.1 24.380 726 450 22 112 821 23 665 7.29e-44 173
Msa1322680 AT3G47950.1 24.758 723 451 24 112 821 27 669 5.90e-43 170
Msa1322680 AT3G47950.2 24.758 723 451 24 112 821 27 669 5.90e-43 170
Msa1322680 AT2G07560.1 24.481 723 452 20 112 821 22 663 4.58e-42 167
Msa1322680 AT3G42640.1 24.276 725 452 22 112 821 22 664 5.98e-42 167
Msa1322680 AT4G30190.2 24.339 756 442 25 112 820 19 691 1.72e-41 166
Msa1322680 AT2G24520.4 25.115 434 273 12 390 820 13 397 7.45e-32 134
Msa1322680 AT5G57350.3 23.733 434 279 10 390 820 13 397 6.28e-31 130
Msa1322680 AT4G30110.1 29.524 210 111 5 636 845 508 680 3.05e-15 81.3
Msa1322680 AT4G30110.2 29.524 210 111 5 636 845 508 680 3.05e-15 81.3
Msa1322680 AT4G11730.1 23.662 355 232 9 112 459 23 345 3.66e-15 80.9
Msa1322680 AT5G44790.1 31.658 199 100 6 639 836 798 961 8.07e-15 80.1
Msa1322680 AT5G44790.1 25.118 211 152 3 248 458 467 671 1.36e-11 69.3
Msa1322680 AT2G19110.2 27.143 210 115 7 636 845 518 689 1.15e-11 69.7
Msa1322680 AT2G19110.3 27.143 210 115 7 636 845 518 689 1.15e-11 69.7
Msa1322680 AT2G19110.1 27.143 210 115 7 636 845 518 689 1.15e-11 69.7

Find 237 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACCCGGCAACACTATTT+TGG 0.101176 8_4:-29822541 Msa1322680:CDS
CCATTTCGGAAGCATTATTT+TGG 0.162724 8_4:+29821453 None:intergenic
GATTCAGCATTGTTGGAATT+TGG 0.197819 8_4:-29821386 Msa1322680:CDS
TCCCACACAAATTTAATAAA+AGG 0.197886 8_4:+29822487 None:intergenic
GGTGAGGTTGTTGCGGTTAC+TGG 0.202382 8_4:-29820645 Msa1322680:CDS
GAATAACATGGAGGAATTTC+TGG 0.218281 8_4:-29823420 Msa1322680:exon
TTCAATGGTTAAACCATTAT+TGG 0.219739 8_4:+29820872 None:intergenic
AATAGTGTTGCCGGGTATTT+AGG 0.245250 8_4:+29822545 None:intergenic
ATCAGTGTATAGCCATTATC+AGG 0.254832 8_4:+29821041 None:intergenic
ATATCAAGTTATTGTCCTTA+TGG 0.257926 8_4:-29819295 Msa1322680:CDS
TTGGAATTTGGCTTGCTGTT+GGG 0.262270 8_4:-29821374 Msa1322680:CDS
GCTTTGGGTCAACTTGATTA+TGG 0.279614 8_4:-29819445 Msa1322680:CDS
CACACAATTCAGGAAGAATA+TGG 0.295705 8_4:-29818493 Msa1322680:three_prime_UTR
CCACATATCATATTCATCTT+TGG 0.298952 8_4:-29818426 Msa1322680:three_prime_UTR
ATCTTGTAAACAGGATTAAA+AGG 0.303825 8_4:+29821302 None:intergenic
GACATTGTTCATTTGTCAAT+TGG 0.314846 8_4:-29822193 Msa1322680:CDS
GCTACTATTGTTGGTAAGAT+TGG 0.315134 8_4:-29821911 Msa1322680:CDS
TAACAGCTGTGCAGTTGCTT+TGG 0.320705 8_4:-29819461 Msa1322680:CDS
TATATTTGCTTAGATAAAAC+AGG 0.321402 8_4:-29821617 Msa1322680:CDS
TCTCAGTGGCAGCTGGTGTT+AGG 0.325342 8_4:-29822576 Msa1322680:CDS
TTGTTTATCCTTAACCATTT+CGG 0.327461 8_4:+29821439 None:intergenic
CTCATGTTGTAATTTCATAA+GGG 0.328352 8_4:-29818303 Msa1322680:three_prime_UTR
GTCAATAAACTATGGATATC+TGG 0.329156 8_4:-29821569 Msa1322680:CDS
GAACTTGTCTACAATGGATA+TGG 0.330173 8_4:-29820835 Msa1322680:CDS
AACAGCTGTGCAGTTGCTTT+GGG 0.332787 8_4:-29819460 Msa1322680:CDS
CGAAAAGTTTAACAAATGAT+AGG 0.337177 8_4:-29821688 Msa1322680:CDS
AGTTTCCTTTCGCAGAATAT+TGG 0.337654 8_4:-29818395 Msa1322680:three_prime_UTR
TGGAATTTGGCTTGCTGTTG+GGG 0.340097 8_4:-29821373 Msa1322680:CDS
TTTATCTAAGCAAATATAAC+TGG 0.340269 8_4:+29821622 None:intergenic
GGAGTTGCCATGGGATTATC+AGG 0.341427 8_4:-29820579 Msa1322680:CDS
ATGTCCAATGCCAATTGTAT+AGG 0.342118 8_4:-29821340 Msa1322680:CDS
CCATTGAAGGACAACAATTT+CGG 0.343261 8_4:-29820857 Msa1322680:CDS
GAAAACAACATCCCTGATAA+TGG 0.343419 8_4:-29821053 Msa1322680:CDS
GGTGGAGGAAACGCCATTAC+AGG 0.349939 8_4:-29821951 Msa1322680:CDS
ACATTGTTCATTTGTCAATT+GGG 0.356910 8_4:-29822192 Msa1322680:CDS
TCAACTTTCATTCAATATCA+TGG 0.361147 8_4:+29823490 None:intergenic
TCTCATGTTGTAATTTCATA+AGG 0.361383 8_4:-29818304 Msa1322680:three_prime_UTR
TTGTGGAGATGAAAGATAAT+AGG 0.363721 8_4:-29821541 Msa1322680:CDS
TCCAACAGATTCAGCATTGT+TGG 0.368984 8_4:-29821393 Msa1322680:CDS
CCGAAATTGTTGTCCTTCAA+TGG 0.371993 8_4:+29820857 None:intergenic
GCTGATGGGATTTGCATATC+AGG 0.373463 8_4:-29822157 Msa1322680:CDS
AACAAATACAGGAAAAGCTT+CGG 0.374257 8_4:-29822906 Msa1322680:intron
TATACACTGATAGCCATTCT+AGG 0.381451 8_4:-29821029 Msa1322680:CDS
CGCAGAACTTCAATGATTGA+TGG 0.382720 8_4:+29822305 None:intergenic
TCTGGAAGACTTCGAATTAG+TGG 0.383721 8_4:-29823402 Msa1322680:CDS
TGTGGTATACTCACCAATAA+TGG 0.385351 8_4:-29820885 Msa1322680:CDS
CCAAAATAATGCTTCCGAAA+TGG 0.387368 8_4:-29821453 Msa1322680:CDS
ACAAGAGATGCAATTGAATC+TGG 0.388276 8_4:+29822667 None:intergenic
GAACAAGAACATTTCAGTTA+AGG 0.389176 8_4:-29822269 Msa1322680:CDS
AACAGCCATTATTGTTGCTC+TGG 0.393158 8_4:-29819597 Msa1322680:CDS
TTTATTGACCACCATGCAAT+TGG 0.395223 8_4:+29821583 None:intergenic
TAAACCCAAAATAGTGTTGC+CGG 0.395664 8_4:+29822536 None:intergenic
CCATAGCTAGCACACAATTC+AGG 0.395773 8_4:-29818503 Msa1322680:exon
AGTTGAAAGAAAAGTCAGTT+TGG 0.396304 8_4:-29823473 Msa1322680:five_prime_UTR
GCATGGTGGTCAATAAACTA+TGG 0.398688 8_4:-29821577 Msa1322680:CDS
TCGGGAACCAAAGTGATAGA+TGG 0.398940 8_4:-29822052 Msa1322680:CDS
CCGTTCAGTTTCACCTGTAA+TGG 0.400443 8_4:+29821938 None:intergenic
TCTTAAGTTTCCTATACAAT+TGG 0.400584 8_4:+29821330 None:intergenic
TTTGCCCCGATTGCTATTGC+TGG 0.407392 8_4:-29822850 Msa1322680:intron
TAATGCTTCCGAAATGGTTA+AGG 0.411681 8_4:-29821447 Msa1322680:CDS
CGAATCAAGTTTAACTGGTC+AGG 0.413992 8_4:-29822116 Msa1322680:CDS
CAATAACTTGATATATGCTT+TGG 0.414253 8_4:+29819304 None:intergenic
TATGTTGAAGTGCATGTTGA+TGG 0.415403 8_4:-29822703 Msa1322680:CDS
TTTATTTCTGCTTCTGTCAC+AGG 0.417306 8_4:-29819566 Msa1322680:intron
CTGCAAGTCGGAACCTTCTA+CGG 0.418098 8_4:+29823315 None:intergenic
ACTACACAGGGTCACTGATC+TGG 0.419069 8_4:-29823442 Msa1322680:five_prime_UTR
ACAAATACAGGAAAAGCTTC+GGG 0.424408 8_4:-29822905 Msa1322680:intron
AACGGAGTTGCTACTATTGT+TGG 0.425293 8_4:-29821920 Msa1322680:CDS
GTTGGAATTTGGCTTGCTGT+TGG 0.425604 8_4:-29821375 Msa1322680:CDS
ACGGCCAATGGTAAACCTTC+TGG 0.425748 8_4:+29821734 None:intergenic
TATTGTCAATATTATCAAAT+GGG 0.430176 8_4:-29819666 Msa1322680:CDS
CTATTGTCAATATTATCAAA+TGG 0.432147 8_4:-29819667 Msa1322680:CDS
ACATGCACTTCAACATAATC+AGG 0.433146 8_4:+29822709 None:intergenic
ACTGTCATCATCTTGTAAAC+AGG 0.437296 8_4:+29821293 None:intergenic
ATCGACGAATCAAGTTTAAC+TGG 0.440475 8_4:-29822121 Msa1322680:CDS
TATTCGCCGTGACGGTTACC+AGG 0.442870 8_4:-29818540 Msa1322680:CDS
TTCATAAGTTCATCGTTAAG+TGG 0.443590 8_4:+29819390 None:intergenic
GATCACCAGAGCAACAATAA+TGG 0.446023 8_4:+29819592 None:intergenic
AATAATGGTTTAACCATTGA+AGG 0.446573 8_4:-29820870 Msa1322680:CDS
CTCAGTGGCAGCTGGTGTTA+GGG 0.453525 8_4:-29822575 Msa1322680:CDS
TCTTCTTACATTAGCTGTGT+TGG 0.454285 8_4:-29821876 Msa1322680:CDS
GTTTCCTATACAATTGGCAT+TGG 0.455109 8_4:+29821336 None:intergenic
TTGGTTCCCGAAAGTAGAAA+AGG 0.455301 8_4:+29822064 None:intergenic
ACCGTACCAGCAATAGCAAT+CGG 0.461938 8_4:+29822844 None:intergenic
TTGGAGAAGCGCCGTCTCGC+TGG 0.462145 8_4:-29823348 Msa1322680:CDS
AAAAGTATACGAAGGTTATG+TGG 0.464505 8_4:+29818194 None:intergenic
GTAATCATTGTGCAGTTCCT+TGG 0.465684 8_4:-29818683 Msa1322680:CDS
CTTGAAAATTAAGAACCATA+AGG 0.467857 8_4:+29819280 None:intergenic
TCGATTTATGATCTCGTAGT+AGG 0.467977 8_4:-29822217 Msa1322680:CDS
ATCATTGAAGTTCTGCGAAT+GGG 0.468883 8_4:-29822299 Msa1322680:CDS
TGGTGAAGAATCCCCGTAGA+AGG 0.469444 8_4:-29823328 Msa1322680:CDS
AGACTTCGAATTAGTGGATA+AGG 0.469617 8_4:-29823396 Msa1322680:CDS
AGGATCATTGATTCCTAGAA+TGG 0.472659 8_4:+29821016 None:intergenic
TCCAACAATGCTGAATCTGT+TGG 0.477694 8_4:+29821392 None:intergenic
CCCCGACCCATCTATCACTT+TGG 0.478611 8_4:+29822045 None:intergenic
CCTGAATTGTGTGCTAGCTA+TGG 0.479391 8_4:+29818503 None:intergenic
TCAGTTAAGGTCACACGAGA+TGG 0.480503 8_4:-29822256 Msa1322680:CDS
TTTGAATGACGTAGGGGTGG+AGG 0.483232 8_4:-29821966 Msa1322680:CDS
CTGTACAGTGCCTCTGAACT+TGG 0.485411 8_4:-29818651 Msa1322680:CDS
CATTGTTCATTTGTCAATTG+GGG 0.486132 8_4:-29822191 Msa1322680:CDS
CTGTTGGCATGAGGACTGAA+TGG 0.488590 8_4:-29822006 Msa1322680:CDS
TTTCAAGGGAAGAATATACT+TGG 0.490158 8_4:-29819264 Msa1322680:CDS
GGCTCACTGACAAGAGCTAA+AGG 0.491072 8_4:+29819411 None:intergenic
CTTTCTGCATGTGAAGCAAT+GGG 0.493063 8_4:-29821650 Msa1322680:CDS
GTAACCATTGCCATGGTCAC+TGG 0.494913 8_4:-29820945 Msa1322680:CDS
CTTCGTGTCTCAGTGGCAGC+TGG 0.494916 8_4:-29822583 Msa1322680:CDS
TGCAAGTCGGAACCTTCTAC+GGG 0.497897 8_4:+29823316 None:intergenic
ACCAAAGTGATAGATGGGTC+GGG 0.504380 8_4:-29822046 Msa1322680:CDS
TCTTTGACACCAAGGCGTAT+AGG 0.504928 8_4:+29820996 None:intergenic
AGCAACTGCACAGCTGTTAG+CGG 0.505639 8_4:+29819465 None:intergenic
GGAATTTGGCTTGCTGTTGG+GGG 0.506773 8_4:-29821372 Msa1322680:CDS
TCTTTCTGCATGTGAAGCAA+TGG 0.508859 8_4:-29821651 Msa1322680:CDS
GAATTTGGCTTGCTGTTGGG+GGG 0.509071 8_4:-29821371 Msa1322680:CDS
AGGTTAAGTGTCACGGCCAA+TGG 0.512800 8_4:+29821722 None:intergenic
ATTGACCACCATGCAATTGG+AGG 0.513485 8_4:+29821586 None:intergenic
GTTGTTGCGGTTACTGGTGA+TGG 0.513631 8_4:-29820639 Msa1322680:CDS
CCGTACCAGCAATAGCAATC+GGG 0.513887 8_4:+29822845 None:intergenic
GGTGGAAAATTTGCCACTGA+AGG 0.513938 8_4:-29822409 Msa1322680:CDS
ATGTGTGCCTCATGCAGTGC+AGG 0.514389 8_4:+29820603 None:intergenic
AAGAATATACTTGGTATAAG+TGG 0.514915 8_4:-29819255 Msa1322680:CDS
ATCAATGATCCTATACGCCT+TGG 0.518802 8_4:-29821005 Msa1322680:CDS
TGGTTCCCGAAAGTAGAAAA+GGG 0.521833 8_4:+29822065 None:intergenic
CACCGATCATGACATAATAC+AGG 0.523469 8_4:+29818353 None:intergenic
CTTGTTAGTCTTCCCAATGG+TGG 0.523606 8_4:-29821269 Msa1322680:CDS
TGCCCTATTACAAGAAAAGC+AGG 0.524477 8_4:-29823276 Msa1322680:intron
GCTTATCTGAAGGATATGTT+TGG 0.526629 8_4:-29820666 Msa1322680:CDS
TGTTGGCATGAGGACTGAAT+GGG 0.530670 8_4:-29822005 Msa1322680:CDS
GCAACTGCACAGCTGTTAGC+GGG 0.531543 8_4:+29819466 None:intergenic
CAAGTTCAGAGGCACTGTAC+AGG 0.534169 8_4:+29818652 None:intergenic
GAAAACTCGTAGTCCACCAT+TGG 0.534975 8_4:+29821256 None:intergenic
GAGATGAAAGATAATAGGAA+TGG 0.535453 8_4:-29821536 Msa1322680:CDS
GCTCACTGACAAGAGCTAAA+GGG 0.535956 8_4:+29819412 None:intergenic
TGTTGGAGTTCCCAATATTG+TGG 0.537381 8_4:+29821409 None:intergenic
TGCCTCTGAACTTGGAACTC+TGG 0.541371 8_4:-29818643 Msa1322680:CDS
GGCACACATTGGAGTTGCCA+TGG 0.542531 8_4:-29820589 Msa1322680:CDS
GTTCATAACTATGATAGCAA+TGG 0.544053 8_4:-29822646 Msa1322680:CDS
TCATGTTGTAATTTCATAAG+GGG 0.544061 8_4:-29818302 Msa1322680:three_prime_UTR
ATGGATATCTGGAGAAGTTG+TGG 0.545213 8_4:-29821558 Msa1322680:CDS
GTACAGAGGCGGTGAGCCGT+TGG 0.545845 8_4:-29823367 Msa1322680:CDS
GGGGATCAAGTACCTGCTGA+TGG 0.546301 8_4:-29822172 Msa1322680:CDS
TGTTCCAGAAGGTTTACCAT+TGG 0.546447 8_4:-29821738 Msa1322680:CDS
TGTGCTAGCTATGGTTGTGC+AGG 0.550993 8_4:+29818512 None:intergenic
AACCAAAGTGATAGATGGGT+CGG 0.551546 8_4:-29822047 Msa1322680:CDS
TGAAGAGGCCTCCAGTTGGA+AGG 0.551685 8_4:-29819371 Msa1322680:CDS
CAAGATCGACATTCTTCGCA+TGG 0.552524 8_4:+29821150 None:intergenic
CAGTTAAGGTCACACGAGAT+GGG 0.552624 8_4:-29822255 Msa1322680:CDS
GAAAAGTTTAACAAATGATA+GGG 0.552935 8_4:-29821687 Msa1322680:CDS
GTTCAAACTTGTATAGCAGC+AGG 0.552990 8_4:-29820969 Msa1322680:CDS
AGGAATGGAAATAAACTGAA+AGG 0.555817 8_4:-29821521 Msa1322680:CDS
CTCCATTGTAGCTTATCTGA+AGG 0.557183 8_4:-29820676 Msa1322680:CDS
CCAAAGATGAATATGATATG+TGG 0.557659 8_4:+29818426 None:intergenic
ATAGTCATTGCTGTTCCAGA+AGG 0.561808 8_4:-29821749 Msa1322680:CDS
GCACACATTGGAGTTGCCAT+GGG 0.563678 8_4:-29820588 Msa1322680:CDS
GATGAGGTGGGTATTATACT+TGG 0.565203 8_4:-29822367 Msa1322680:CDS
TGACGTCAACGCATTAGAAG+TGG 0.566422 8_4:+29823520 None:intergenic
CATGTTGTAATTTCATAAGG+GGG 0.566790 8_4:-29818301 Msa1322680:three_prime_UTR
AATCATTGAAGTTCTGCGAA+TGG 0.567295 8_4:-29822300 Msa1322680:CDS
GAAGAGGCCTCCAGTTGGAA+GGG 0.567609 8_4:-29819370 Msa1322680:CDS
AAACCCAAAATAGTGTTGCC+GGG 0.567734 8_4:+29822537 None:intergenic
TGATGCCAATATTCTGCGAA+AGG 0.568120 8_4:+29818390 None:intergenic
GTCCTTGTTAGTCTTCCCAA+TGG 0.568576 8_4:-29821272 Msa1322680:CDS
GTGGAAAATTTGCCACTGAA+GGG 0.568868 8_4:-29822408 Msa1322680:CDS
CGGGAACCAAAGTGATAGAT+GGG 0.569519 8_4:-29822051 Msa1322680:CDS
TCGAATTAGTGGATAAGGAT+CGG 0.572348 8_4:-29823391 Msa1322680:CDS
ATCGCCAGTGACCATGGCAA+TGG 0.574928 8_4:+29820941 None:intergenic
ATTTCGGAACTTGTCTACAA+TGG 0.575444 8_4:-29820841 Msa1322680:CDS
GATATGCAAATCCCATCAGC+AGG 0.576215 8_4:+29822160 None:intergenic
CTCTGTGCCTGATAATCCCA+TGG 0.576412 8_4:+29820572 None:intergenic
ATCATGACATAATACAGGTA+AGG 0.576481 8_4:+29818358 None:intergenic
AAAACTCGTAGTCCACCATT+GGG 0.576714 8_4:+29821257 None:intergenic
AATAGTTCTCAAAGGTTCAG+AGG 0.578252 8_4:+29821112 None:intergenic
AAGAGGCCTCCAGTTGGAAG+GGG 0.580347 8_4:-29819369 Msa1322680:CDS
GCGATGATATGAATATAGCT+AGG 0.580986 8_4:-29820923 Msa1322680:CDS
GGGATCAAGTACCTGCTGAT+GGG 0.581925 8_4:-29822171 Msa1322680:CDS
ATGGAGTTGAAGGCATTGCA+AGG 0.582724 8_4:-29822609 Msa1322680:CDS
AGTAAATGTGTATGATGAGG+TGG 0.583365 8_4:-29822380 Msa1322680:CDS
AAAGTATACGAAGGTTATGT+GGG 0.585483 8_4:+29818195 None:intergenic
ATGGTTGTGCAGGAAGTGCC+TGG 0.586165 8_4:+29818522 None:intergenic
TTTCTTGATTTACATAAACT+GGG 0.587025 8_4:+29822089 None:intergenic
CTTGTCTACAATGGATATGG+AGG 0.588012 8_4:-29820832 Msa1322680:CDS
AGGACTATTGCTACAGAATG+TGG 0.588492 8_4:-29820903 Msa1322680:CDS
TTAACGATGAACTTATGAAG+AGG 0.591899 8_4:-29819386 Msa1322680:CDS
CATATCATCGCCAGTGACCA+TGG 0.591987 8_4:+29820935 None:intergenic
CCAAAGTGATAGATGGGTCG+GGG 0.592827 8_4:-29822045 Msa1322680:CDS
TACCTGTATTATGTCATGAT+CGG 0.594440 8_4:-29818355 Msa1322680:three_prime_UTR
TTTCGAGATCCGCTGCAAGT+CGG 0.595762 8_4:+29823303 None:intergenic
GCTAAAGAAATAGTTCTCAA+AGG 0.597281 8_4:+29821104 None:intergenic
GACAGTGACCTCCAATTGCA+TGG 0.597486 8_4:-29821594 Msa1322680:CDS
ATTTACTAGCAACCCTTCAG+TGG 0.605264 8_4:+29822396 None:intergenic
ATCCTTCAGATAAGCTACAA+TGG 0.609602 8_4:+29820674 None:intergenic
TGATGCTCCTGCACTGCATG+AGG 0.610642 8_4:-29820610 Msa1322680:CDS
GATGTAAGTATTCGCCGTGA+CGG 0.610700 8_4:-29818548 Msa1322680:CDS
TGACAAGAGCTAAAGGGCAG+AGG 0.610855 8_4:+29819418 None:intergenic
AGCAGGAGTAACCATTGCCA+TGG 0.610945 8_4:-29820952 Msa1322680:CDS
AACCAGAGTTCCAAGTTCAG+AGG 0.612528 8_4:+29818641 None:intergenic
CTTATGAAGAGGCCTCCAGT+TGG 0.613832 8_4:-29819375 Msa1322680:CDS
AAAAGCAAGGTTAAGTGTCA+CGG 0.614563 8_4:+29821715 None:intergenic
GCACTGCATGAGGCACACAT+TGG 0.614582 8_4:-29820600 Msa1322680:CDS
CCATTACAGGTGAAACTGAA+CGG 0.619108 8_4:-29821938 Msa1322680:CDS
AAGATGCTAGTGGCAGCTGT+TGG 0.620189 8_4:-29822022 Msa1322680:CDS
GGGAAAATAGCCTAAATACC+CGG 0.626879 8_4:-29822555 Msa1322680:CDS
GTCACTGATCTGGAATAACA+TGG 0.628342 8_4:-29823432 Msa1322680:exon
TAGAAGGTTCCGACTTGCAG+CGG 0.628788 8_4:-29823312 Msa1322680:CDS
TATGTTTGGTGAGGTTGTTG+CGG 0.630527 8_4:-29820652 Msa1322680:CDS
TCTGAAGGATATGTTTGGTG+AGG 0.638884 8_4:-29820661 Msa1322680:CDS
CACCATTGGGAAGACTAACA+AGG 0.640019 8_4:+29821270 None:intergenic
GTAAATGTGTATGATGAGGT+GGG 0.640086 8_4:-29822379 Msa1322680:CDS
ATTGTCAATATTATCAAATG+GGG 0.641772 8_4:-29819665 Msa1322680:CDS
CTGTACAGGCAAAATTGCCA+AGG 0.645627 8_4:+29818666 None:intergenic
GGGATTCTTCACCAGCGAGA+CGG 0.646880 8_4:+29823337 None:intergenic
TATTATCAAATGGGGACGTG+CGG 0.647774 8_4:-29819657 Msa1322680:CDS
TTATCACGAATGCCATGTGG+AGG 0.649611 8_4:-29819338 Msa1322680:CDS
TGGAGTGTTTGTCATGTGGT+AGG 0.650498 8_4:+29820694 None:intergenic
ATATTTGCTTAGATAAAACA+GGG 0.651410 8_4:-29821616 Msa1322680:CDS
TTTGGAGATTGAGACTACAC+AGG 0.651846 8_4:-29823455 Msa1322680:five_prime_UTR
GCTAGTAAATGTGTATGATG+AGG 0.652202 8_4:-29822383 Msa1322680:CDS
GAAGTGCCTGGTAACCGTCA+CGG 0.653328 8_4:+29818534 None:intergenic
TCAGTGTATAGCCATTATCA+GGG 0.658211 8_4:+29821042 None:intergenic
TAGTGGCAGCTGTTGGCATG+AGG 0.660093 8_4:-29822015 Msa1322680:CDS
TACAAAACAAAAGTATACGA+AGG 0.662362 8_4:+29818186 None:intergenic
GAACGACGTCTTTGACACCA+AGG 0.678662 8_4:+29820988 None:intergenic
TTGGAGATTGAGACTACACA+GGG 0.679740 8_4:-29823454 Msa1322680:five_prime_UTR
CATGGGATTATCAGGCACAG+AGG 0.681497 8_4:-29820571 Msa1322680:intron
CGTACCAGCAATAGCAATCG+GGG 0.682003 8_4:+29822846 None:intergenic
CTTGTGTATAAAGCAACTCG+CGG 0.683672 8_4:-29821842 Msa1322680:CDS
AAGGAAACTTCGTGTCTCAG+TGG 0.687735 8_4:-29822590 Msa1322680:CDS
TGGGTCGGGGAAGATGCTAG+TGG 0.690747 8_4:-29822032 Msa1322680:CDS
TAAGGATCGGAGTACAGAGG+CGG 0.699403 8_4:-29823378 Msa1322680:CDS
CAAATGATAGGGCACTCGTG+AGG 0.700836 8_4:-29821676 Msa1322680:CDS
AATTTATCACGAATGCCATG+TGG 0.704554 8_4:-29819341 Msa1322680:CDS
GGATAAGGATCGGAGTACAG+AGG 0.706628 8_4:-29823381 Msa1322680:CDS
ACAATGGAGTGTTTGTCATG+TGG 0.709053 8_4:+29820690 None:intergenic
GTTGGCATGAGGACTGAATG+GGG 0.732375 8_4:-29822004 Msa1322680:CDS
GAAATGGTTAAGGATAAACA+AGG 0.742289 8_4:-29821437 Msa1322680:CDS
ACTGATCTGGAATAACATGG+AGG 0.750860 8_4:-29823429 Msa1322680:exon
AGTGACCTCCAATTGCATGG+TGG 0.754752 8_4:-29821591 Msa1322680:CDS
GCAAGTCGGAACCTTCTACG+GGG 0.776337 8_4:+29823317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAGATAGAAATTAGAT+TGG + chr8_4:29818509-29818528 None:intergenic 15.0%
!! AATGGTTTCAAAAAAATTAA+TGG - chr8_4:29819081-29819100 Msa1322680:intron 15.0%
!! TAAAAGTAAAAACTATAGTA+TGG + chr8_4:29821707-29821726 None:intergenic 15.0%
!! ATATGAATATAAACTAAATC+TGG + chr8_4:29821828-29821847 None:intergenic 15.0%
!!! AAATGCTGATATAATTTTAA+TGG - chr8_4:29822004-29822023 Msa1322680:CDS 15.0%
!! TATTGTCAATATTATCAAAT+GGG - chr8_4:29822043-29822062 Msa1322680:CDS 15.0%
!! AGATAGAAAACGAAAAATTA+TGG - chr8_4:29818613-29818632 Msa1322680:CDS 20.0%
!! GATAGAAAACGAAAAATTAT+GGG - chr8_4:29818614-29818633 Msa1322680:CDS 20.0%
!! CATTAATCAAATGATCAAAT+TGG + chr8_4:29818769-29818788 None:intergenic 20.0%
!!! TTTTCCTGTATTTGTTTATA+AGG + chr8_4:29818799-29818818 None:intergenic 20.0%
!! AAAAAAATTAATGGAGTTGA+AGG - chr8_4:29819090-29819109 Msa1322680:intron 20.0%
!!! AACCTTTTATTAAATTTGTG+TGG - chr8_4:29819220-29819239 Msa1322680:CDS 20.0%
!!! ACCTTTTATTAAATTTGTGT+GGG - chr8_4:29819221-29819240 Msa1322680:CDS 20.0%
!! TTTCTTGATTTACATAAACT+GGG + chr8_4:29819623-29819642 None:intergenic 20.0%
!!! TTTTCTTGATTTACATAAAC+TGG + chr8_4:29819624-29819643 None:intergenic 20.0%
!! GAAAAGTTTAACAAATGATA+GGG - chr8_4:29820022-29820041 Msa1322680:intron 20.0%
!! TTTATCTAAGCAAATATAAC+TGG + chr8_4:29820090-29820109 None:intergenic 20.0%
!! TATATTTGCTTAGATAAAAC+AGG - chr8_4:29820092-29820111 Msa1322680:intron 20.0%
!! ATATTTGCTTAGATAAAACA+GGG - chr8_4:29820093-29820112 Msa1322680:intron 20.0%
!! AACTGAGGATTATTATAATT+TGG + chr8_4:29821211-29821230 None:intergenic 20.0%
!!! GTTTTTACTTTTATAGTTCA+CGG - chr8_4:29821714-29821733 Msa1322680:CDS 20.0%
!!! TTTTTACTTTTATAGTTCAC+GGG - chr8_4:29821715-29821734 Msa1322680:CDS 20.0%
!! ATATTCATATTCATATCCAA+TGG - chr8_4:29821838-29821857 Msa1322680:CDS 20.0%
!!! AGCAGAAATGTTTTTTTTAT+AGG + chr8_4:29821939-29821958 None:intergenic 20.0%
!!! AATTATATCAGCATTTTCTT+TGG + chr8_4:29822000-29822019 None:intergenic 20.0%
!! CTATTGTCAATATTATCAAA+TGG - chr8_4:29822042-29822061 Msa1322680:CDS 20.0%
!! ATTGTCAATATTATCAAATG+GGG - chr8_4:29822044-29822063 Msa1322680:CDS 20.0%
!!! TTATGGTTCTTAATTTTCAA+GGG - chr8_4:29822431-29822450 Msa1322680:CDS 20.0%
!! TAAGCTAAAATCAAAATTCA+TGG + chr8_4:29822568-29822587 None:intergenic 20.0%
!!! TTTTTTACATTGTTGATGAA+TGG + chr8_4:29822622-29822641 None:intergenic 20.0%
!!! TGTAAAAAAGTTTTAACTAG+AGG - chr8_4:29822633-29822652 Msa1322680:CDS 20.0%
!! GAGTAATTAAAAATCAGAAT+AGG + chr8_4:29822862-29822881 None:intergenic 20.0%
!!! TGGTTAATTAGTGTTTTAAT+TGG - chr8_4:29823086-29823105 Msa1322680:intron 20.0%
!!! TACTTACATCTTTTTCAATT+GGG + chr8_4:29823151-29823170 None:intergenic 20.0%
!!! ATACTTACATCTTTTTCAAT+TGG + chr8_4:29823152-29823171 None:intergenic 20.0%
!! ACAAAAGAAAAAAAAGTTCA+GGG + chr8_4:29823246-29823265 None:intergenic 20.0%
!! TACAAAAGAAAAAAAAGTTC+AGG + chr8_4:29823247-29823266 None:intergenic 20.0%
!!! TTTGATTCAACAAGTTTTAA+AGG - chr8_4:29823483-29823502 Msa1322680:five_prime_UTR 20.0%
! TCAACTTTCATTCAATATCA+TGG + chr8_4:29818222-29818241 None:intergenic 25.0%
! TATAGGAAACAACATACTAT+AGG + chr8_4:29818551-29818570 None:intergenic 25.0%
! GATAATATTAGCATTGCATT+TGG + chr8_4:29818703-29818722 None:intergenic 25.0%
! TCCCACACAAATTTAATAAA+AGG + chr8_4:29819225-29819244 None:intergenic 25.0%
!!! GTTTGTTCCATAGTTTTAAT+AGG - chr8_4:29819279-29819298 Msa1322680:CDS 25.0%
!! TTTTCCACCTATTAAAACTA+TGG + chr8_4:29819289-29819308 None:intergenic 25.0%
!!! TATACTTGGTGTATTCTTTT+TGG - chr8_4:29819356-29819375 Msa1322680:CDS 25.0%
! ACATTGTTCATTTGTCAATT+GGG - chr8_4:29819517-29819536 Msa1322680:intron 25.0%
! CGAAAAGTTTAACAAATGAT+AGG - chr8_4:29820021-29820040 Msa1322680:intron 25.0%
! TTGTTTATCCTTAACCATTT+CGG + chr8_4:29820273-29820292 None:intergenic 25.0%
! TCTTAAGTTTCCTATACAAT+TGG + chr8_4:29820382-29820401 None:intergenic 25.0%
! ATCTTGTAAACAGGATTAAA+AGG + chr8_4:29820410-29820429 None:intergenic 25.0%
! TTCAATGGTTAAACCATTAT+TGG + chr8_4:29820840-29820859 None:intergenic 25.0%
! AATAATGGTTTAACCATTGA+AGG - chr8_4:29820839-29820858 Msa1322680:CDS 25.0%
!! GATATTAGAACCTGAATTTT+TGG + chr8_4:29820911-29820930 None:intergenic 25.0%
! GAAACAAACATTTCAAATAG+AGG + chr8_4:29820956-29820975 None:intergenic 25.0%
! TATTGAACACAAATTTAGAG+AGG - chr8_4:29821300-29821319 Msa1322680:CDS 25.0%
! AATAGTAGATCTGAATTTGT+AGG - chr8_4:29821388-29821407 Msa1322680:CDS 25.0%
!! TTGGATAGTGGTTATAAAAA+AGG - chr8_4:29821592-29821611 Msa1322680:CDS 25.0%
! ATTTGGTTATCATCTATTCA+AGG - chr8_4:29822180-29822199 Msa1322680:CDS 25.0%
! TTTGGTTATCATCTATTCAA+GGG - chr8_4:29822181-29822200 Msa1322680:CDS 25.0%
! CAATAACTTGATATATGCTT+TGG + chr8_4:29822408-29822427 None:intergenic 25.0%
! ATATCAAGTTATTGTCCTTA+TGG - chr8_4:29822414-29822433 Msa1322680:CDS 25.0%
! CTTGAAAATTAAGAACCATA+AGG + chr8_4:29822432-29822451 None:intergenic 25.0%
!! CTTATGGTTCTTAATTTTCA+AGG - chr8_4:29822430-29822449 Msa1322680:CDS 25.0%
! AAGAATATACTTGGTATAAG+TGG - chr8_4:29822454-29822473 Msa1322680:CDS 25.0%
!!! CAACTCCTTTATATTTTTTC+AGG - chr8_4:29822513-29822532 Msa1322680:CDS 25.0%
! CTGTACCTGAAAAAATATAA+AGG + chr8_4:29822521-29822540 None:intergenic 25.0%
! TGTAACAAAATGATACCATT+GGG + chr8_4:29822671-29822690 None:intergenic 25.0%
! ATGTAACAAAATGATACCAT+TGG + chr8_4:29822672-29822691 None:intergenic 25.0%
! TCTCATGTTGTAATTTCATA+AGG - chr8_4:29823405-29823424 Msa1322680:CDS 25.0%
! CTCATGTTGTAATTTCATAA+GGG - chr8_4:29823406-29823425 Msa1322680:CDS 25.0%
! TCATGTTGTAATTTCATAAG+GGG - chr8_4:29823407-29823426 Msa1322680:CDS 25.0%
!! TACAAAACAAAAGTATACGA+AGG + chr8_4:29823526-29823545 None:intergenic 25.0%
AGTTGAAAGAAAAGTCAGTT+TGG - chr8_4:29818236-29818255 Msa1322680:three_prime_UTR 30.0%
!! AACCTGCTTTTCTTGTAATA+GGG + chr8_4:29818438-29818457 None:intergenic 30.0%
!! AAACCTGCTTTTCTTGTAAT+AGG + chr8_4:29818439-29818458 None:intergenic 30.0%
ATGGGAAAACAACATACTAT+AGG - chr8_4:29818632-29818651 Msa1322680:CDS 30.0%
GAAAACAACATACTATAGGA+AGG - chr8_4:29818636-29818655 Msa1322680:CDS 30.0%
ATTGCATTTGGAAATGTCAT+TGG + chr8_4:29818691-29818710 None:intergenic 30.0%
CCTGTATTTGTTTATAAGGA+AGG + chr8_4:29818795-29818814 None:intergenic 30.0%
CCTTCCTTATAAACAAATAC+AGG - chr8_4:29818792-29818811 Msa1322680:CDS 30.0%
AACAAATACAGGAAAAGCTT+CGG - chr8_4:29818803-29818822 Msa1322680:intron 30.0%
!!! TTTTGAGTTCAACTGACTTT+TGG - chr8_4:29818969-29818988 Msa1322680:intron 30.0%
GTTCATAACTATGATAGCAA+TGG - chr8_4:29819063-29819082 Msa1322680:intron 30.0%
!! CTCAACACTCATTTTTCTTA+TGG - chr8_4:29819257-29819276 Msa1322680:CDS 30.0%
!!! TGTTCCATAGTTTTAATAGG+TGG - chr8_4:29819282-29819301 Msa1322680:CDS 30.0%
GAACAAGAACATTTCAGTTA+AGG - chr8_4:29819440-29819459 Msa1322680:CDS 30.0%
GACATTGTTCATTTGTCAAT+TGG - chr8_4:29819516-29819535 Msa1322680:intron 30.0%
CATTGTTCATTTGTCAATTG+GGG - chr8_4:29819518-29819537 Msa1322680:intron 30.0%
! AGAAAACCCTTTTCTACTTT+CGG - chr8_4:29819638-29819657 Msa1322680:CDS 30.0%
!!! TAGAAGTTTTGAATGACGTA+GGG - chr8_4:29819736-29819755 Msa1322680:intron 30.0%
GTCAATAAACTATGGATATC+TGG - chr8_4:29820140-29820159 Msa1322680:intron 30.0%
TTGTGGAGATGAAAGATAAT+AGG - chr8_4:29820168-29820187 Msa1322680:intron 30.0%
GAGATGAAAGATAATAGGAA+TGG - chr8_4:29820173-29820192 Msa1322680:intron 30.0%
AGGAATGGAAATAAACTGAA+AGG - chr8_4:29820188-29820207 Msa1322680:intron 30.0%
GAAATGGTTAAGGATAAACA+AGG - chr8_4:29820272-29820291 Msa1322680:intron 30.0%
ACAAGGAAAAACCACAATAT+TGG - chr8_4:29820289-29820308 Msa1322680:intron 30.0%
CAAGGAAAAACCACAATATT+GGG - chr8_4:29820290-29820309 Msa1322680:intron 30.0%
GCTAAAGAAATAGTTCTCAA+AGG + chr8_4:29820608-29820627 None:intergenic 30.0%
!!! TAGAACCTGAATTTTTGGTA+TGG + chr8_4:29820906-29820925 None:intergenic 30.0%
TACATGCTTAATATTGATGC+AGG - chr8_4:29820979-29820998 Msa1322680:CDS 30.0%
!! GAATAGTTAGCTTGCTTTAT+AGG + chr8_4:29821423-29821442 None:intergenic 30.0%
TTATAACCACTATCCAATGT+TGG + chr8_4:29821589-29821608 None:intergenic 30.0%
!!! CACATTAGTTTTTAGCATGA+AGG + chr8_4:29821914-29821933 None:intergenic 30.0%
TTCATAAGTTCATCGTTAAG+TGG + chr8_4:29822322-29822341 None:intergenic 30.0%
TTAACGATGAACTTATGAAG+AGG - chr8_4:29822323-29822342 Msa1322680:CDS 30.0%
TTTCAAGGGAAGAATATACT+TGG - chr8_4:29822445-29822464 Msa1322680:CDS 30.0%
TTCCACAAATATCTACTACA+TGG - chr8_4:29822706-29822725 Msa1322680:CDS 30.0%
AGTTTATCTCATTGAATACC+TGG + chr8_4:29822917-29822936 None:intergenic 30.0%
! GAGAAGATAAACATTTTCAG+AGG - chr8_4:29822948-29822967 Msa1322680:intron 30.0%
CCAAAGATGAATATGATATG+TGG + chr8_4:29823286-29823305 None:intergenic 30.0%
CCACATATCATATTCATCTT+TGG - chr8_4:29823283-29823302 Msa1322680:CDS 30.0%
ATCATGACATAATACAGGTA+AGG + chr8_4:29823354-29823373 None:intergenic 30.0%
TACCTGTATTATGTCATGAT+CGG - chr8_4:29823354-29823373 Msa1322680:CDS 30.0%
CATGTTGTAATTTCATAAGG+GGG - chr8_4:29823408-29823427 Msa1322680:CDS 30.0%
AAAGTATACGAAGGTTATGT+GGG + chr8_4:29823517-29823536 None:intergenic 30.0%
! AAAAGTATACGAAGGTTATG+TGG + chr8_4:29823518-29823537 None:intergenic 30.0%
GAATAACATGGAGGAATTTC+TGG - chr8_4:29818289-29818308 Msa1322680:three_prime_UTR 35.0%
! AGACTTCGAATTAGTGGATA+AGG - chr8_4:29818313-29818332 Msa1322680:three_prime_UTR 35.0%
! TCGAATTAGTGGATAAGGAT+CGG - chr8_4:29818318-29818337 Msa1322680:three_prime_UTR 35.0%
GGAAACAACATACTATAGGA+AGG + chr8_4:29818547-29818566 None:intergenic 35.0%
ACAAACTTGTGCTAATCCAT+CGG + chr8_4:29818578-29818597 None:intergenic 35.0%
! CTATCTTTGAAAGATTGTGC+AGG + chr8_4:29818725-29818744 None:intergenic 35.0%
ACAAATACAGGAAAAGCTTC+GGG - chr8_4:29818804-29818823 Msa1322680:intron 35.0%
ACATGCACTTCAACATAATC+AGG + chr8_4:29819003-29819022 None:intergenic 35.0%
TATGTTGAAGTGCATGTTGA+TGG - chr8_4:29819006-29819025 Msa1322680:intron 35.0%
ACAAGAGATGCAATTGAATC+TGG + chr8_4:29819045-29819064 None:intergenic 35.0%
TAAACCCAAAATAGTGTTGC+CGG + chr8_4:29819176-29819195 None:intergenic 35.0%
GCTAGTAAATGTGTATGATG+AGG - chr8_4:29819326-29819345 Msa1322680:CDS 35.0%
AGTAAATGTGTATGATGAGG+TGG - chr8_4:29819329-29819348 Msa1322680:CDS 35.0%
GTAAATGTGTATGATGAGGT+GGG - chr8_4:29819330-29819349 Msa1322680:CDS 35.0%
!! CTTTTTGGTCGTCTTTACAT+CGG - chr8_4:29819371-29819390 Msa1322680:CDS 35.0%
AATCATTGAAGTTCTGCGAA+TGG - chr8_4:29819409-29819428 Msa1322680:CDS 35.0%
ATCATTGAAGTTCTGCGAAT+GGG - chr8_4:29819410-29819429 Msa1322680:CDS 35.0%
TCGATTTATGATCTCGTAGT+AGG - chr8_4:29819492-29819511 Msa1322680:intron 35.0%
ATCGACGAATCAAGTTTAAC+TGG - chr8_4:29819588-29819607 Msa1322680:CDS 35.0%
! GAAAACCCTTTTCTACTTTC+GGG - chr8_4:29819639-29819658 Msa1322680:CDS 35.0%
!!! GTAGAAGTTTTGAATGACGT+AGG - chr8_4:29819735-29819754 Msa1322680:intron 35.0%
!!! AGAAGTTTTGAATGACGTAG+GGG - chr8_4:29819737-29819756 Msa1322680:intron 35.0%
! GCTACTATTGTTGGTAAGAT+TGG - chr8_4:29819798-29819817 Msa1322680:intron 35.0%
TCTTCTTACATTAGCTGTGT+TGG - chr8_4:29819833-29819852 Msa1322680:intron 35.0%
AAAAGCAAGGTTAAGTGTCA+CGG + chr8_4:29819997-29820016 None:intergenic 35.0%
! AACTTTTCGTTGCAAAAGCA+AGG + chr8_4:29820010-29820029 None:intergenic 35.0%
TTTATTGACCACCATGCAAT+TGG + chr8_4:29820129-29820148 None:intergenic 35.0%
!!! AGTTCTGAACATACTTTTGC+AGG - chr8_4:29820226-29820245 Msa1322680:intron 35.0%
!!! CCATTTCGGAAGCATTATTT+TGG + chr8_4:29820259-29820278 None:intergenic 35.0%
CCAAAATAATGCTTCCGAAA+TGG - chr8_4:29820256-29820275 Msa1322680:intron 35.0%
TAATGCTTCCGAAATGGTTA+AGG - chr8_4:29820262-29820281 Msa1322680:intron 35.0%
GATTCAGCATTGTTGGAATT+TGG - chr8_4:29820323-29820342 Msa1322680:intron 35.0%
ATGTCCAATGCCAATTGTAT+AGG - chr8_4:29820369-29820388 Msa1322680:intron 35.0%
GTTTCCTATACAATTGGCAT+TGG + chr8_4:29820376-29820395 None:intergenic 35.0%
ACTGTCATCATCTTGTAAAC+AGG + chr8_4:29820419-29820438 None:intergenic 35.0%
! GAAAAAATCATCGACTGCAA+TGG - chr8_4:29820512-29820531 Msa1322680:intron 35.0%
AATAGTTCTCAAAGGTTCAG+AGG + chr8_4:29820600-29820619 None:intergenic 35.0%
GAAAACAACATCCCTGATAA+TGG - chr8_4:29820656-29820675 Msa1322680:CDS 35.0%
TCAGTGTATAGCCATTATCA+GGG + chr8_4:29820670-29820689 None:intergenic 35.0%
ATCAGTGTATAGCCATTATC+AGG + chr8_4:29820671-29820690 None:intergenic 35.0%
TATACACTGATAGCCATTCT+AGG - chr8_4:29820680-29820699 Msa1322680:CDS 35.0%
!! AGGATCATTGATTCCTAGAA+TGG + chr8_4:29820696-29820715 None:intergenic 35.0%
GCGATGATATGAATATAGCT+AGG - chr8_4:29820786-29820805 Msa1322680:intron 35.0%
TGTGGTATACTCACCAATAA+TGG - chr8_4:29820824-29820843 Msa1322680:CDS 35.0%
CCATTGAAGGACAACAATTT+CGG - chr8_4:29820852-29820871 Msa1322680:CDS 35.0%
ATTTCGGAACTTGTCTACAA+TGG - chr8_4:29820868-29820887 Msa1322680:CDS 35.0%
GAACTTGTCTACAATGGATA+TGG - chr8_4:29820874-29820893 Msa1322680:CDS 35.0%
GGTTACCATACCAAAAATTC+AGG - chr8_4:29820898-29820917 Msa1322680:CDS 35.0%
CTTAATATTGATGCAGGTGA+TGG - chr8_4:29820985-29821004 Msa1322680:CDS 35.0%
ATCCTTCAGATAAGCTACAA+TGG + chr8_4:29821038-29821057 None:intergenic 35.0%
GCTTATCTGAAGGATATGTT+TGG - chr8_4:29821043-29821062 Msa1322680:CDS 35.0%
GAAGAAACAGAACAAAACTG+AGG + chr8_4:29821226-29821245 None:intergenic 35.0%
GTTGCTAGTTGTTTAGTTAG+TGG + chr8_4:29821475-29821494 None:intergenic 35.0%
ATGGTTTGACTGCATATAGA+AGG + chr8_4:29821688-29821707 None:intergenic 35.0%
AACACGACGATCTTTAATCT+TGG - chr8_4:29821769-29821788 Msa1322680:CDS 35.0%
AGAAGACTTAGTTATGTAGG+AGG + chr8_4:29821891-29821910 None:intergenic 35.0%
AGGAGAAGACTTAGTTATGT+AGG + chr8_4:29821894-29821913 None:intergenic 35.0%
!! TCTGCTTGCTGAATGTTTTA+TGG - chr8_4:29821953-29821972 Msa1322680:CDS 35.0%
!! TTTATTTCTGCTTCTGTCAC+AGG - chr8_4:29822143-29822162 Msa1322680:CDS 35.0%
GAATAGCTTTCTTCACTTTC+AGG - chr8_4:29822214-29822233 Msa1322680:CDS 35.0%
AATTTATCACGAATGCCATG+TGG - chr8_4:29822368-29822387 Msa1322680:CDS 35.0%
AGGTCAATCATATTTCCCAA+TGG - chr8_4:29822653-29822672 Msa1322680:CDS 35.0%
CACCATGTAGTAGATATTTG+TGG + chr8_4:29822711-29822730 None:intergenic 35.0%
GAGGAGATCGTAAATAATTG+TGG + chr8_4:29822777-29822796 None:intergenic 35.0%
AATACCTGGCAGTAGAAATA+AGG + chr8_4:29822903-29822922 None:intergenic 35.0%
! TTTAAACAGCTGGGCATTTT+CGG - chr8_4:29822974-29822993 Msa1322680:intron 35.0%
CACACAATTCAGGAAGAATA+TGG - chr8_4:29823216-29823235 Msa1322680:intron 35.0%
AGTTTCCTTTCGCAGAATAT+TGG - chr8_4:29823314-29823333 Msa1322680:CDS 35.0%
AATTTCATAAGGGGGTTATG+TGG - chr8_4:29823416-29823435 Msa1322680:CDS 35.0%
TTTGGAGATTGAGACTACAC+AGG - chr8_4:29818254-29818273 Msa1322680:three_prime_UTR 40.0%
TTGGAGATTGAGACTACACA+GGG - chr8_4:29818255-29818274 Msa1322680:three_prime_UTR 40.0%
! GTCACTGATCTGGAATAACA+TGG - chr8_4:29818277-29818296 Msa1322680:three_prime_UTR 40.0%
! ACTGATCTGGAATAACATGG+AGG - chr8_4:29818280-29818299 Msa1322680:three_prime_UTR 40.0%
TCTGGAAGACTTCGAATTAG+TGG - chr8_4:29818307-29818326 Msa1322680:three_prime_UTR 40.0%
TGCCCTATTACAAGAAAAGC+AGG - chr8_4:29818433-29818452 Msa1322680:three_prime_UTR 40.0%
TTGTTTCCTATAGTGACCGA+TGG - chr8_4:29818559-29818578 Msa1322680:CDS 40.0%
GGGAAAATAGCCTAAATACC+CGG - chr8_4:29819154-29819173 Msa1322680:intron 40.0%
AATAGTGTTGCCGGGTATTT+AGG + chr8_4:29819167-29819186 None:intergenic 40.0%
! AATACCCGGCAACACTATTT+TGG - chr8_4:29819168-29819187 Msa1322680:intron 40.0%
! ATACCCGGCAACACTATTTT+GGG - chr8_4:29819169-29819188 Msa1322680:intron 40.0%
AAACCCAAAATAGTGTTGCC+GGG + chr8_4:29819175-29819194 None:intergenic 40.0%
! TCGCATGTTTTTCTGCATAG+CGG + chr8_4:29819200-29819219 None:intergenic 40.0%
GTGGAAAATTTGCCACTGAA+GGG - chr8_4:29819301-29819320 Msa1322680:CDS 40.0%
ATTTACTAGCAACCCTTCAG+TGG + chr8_4:29819316-29819335 None:intergenic 40.0%
GATGAGGTGGGTATTATACT+TGG - chr8_4:29819342-29819361 Msa1322680:CDS 40.0%
CGCAGAACTTCAATGATTGA+TGG + chr8_4:29819407-29819426 None:intergenic 40.0%
CGAATCAAGTTTAACTGGTC+AGG - chr8_4:29819593-29819612 Msa1322680:CDS 40.0%
TGGTTCCCGAAAGTAGAAAA+GGG + chr8_4:29819647-29819666 None:intergenic 40.0%
TTGGTTCCCGAAAGTAGAAA+AGG + chr8_4:29819648-29819667 None:intergenic 40.0%
AACCAAAGTGATAGATGGGT+CGG - chr8_4:29819662-29819681 Msa1322680:CDS 40.0%
CCATTACAGGTGAAACTGAA+CGG - chr8_4:29819771-29819790 Msa1322680:intron 40.0%
AACGGAGTTGCTACTATTGT+TGG - chr8_4:29819789-29819808 Msa1322680:intron 40.0%
CTTGTGTATAAAGCAACTCG+CGG - chr8_4:29819867-29819886 Msa1322680:intron 40.0%
! CTCGCGGAGATTTTACTAAT+TGG - chr8_4:29819883-29819902 Msa1322680:intron 40.0%
! CAGCTTCATAGCATCTTTTG+AGG + chr8_4:29819910-29819929 None:intergenic 40.0%
! ATAGTCATTGCTGTTCCAGA+AGG - chr8_4:29819960-29819979 Msa1322680:intron 40.0%
TGTTCCAGAAGGTTTACCAT+TGG - chr8_4:29819971-29819990 Msa1322680:intron 40.0%
TCTTTCTGCATGTGAAGCAA+TGG - chr8_4:29820058-29820077 Msa1322680:intron 40.0%
CTTTCTGCATGTGAAGCAAT+GGG - chr8_4:29820059-29820078 Msa1322680:intron 40.0%
GCATGGTGGTCAATAAACTA+TGG - chr8_4:29820132-29820151 Msa1322680:intron 40.0%
ATGGATATCTGGAGAAGTTG+TGG - chr8_4:29820151-29820170 Msa1322680:intron 40.0%
TGTTGGAGTTCCCAATATTG+TGG + chr8_4:29820303-29820322 None:intergenic 40.0%
TCCAACAGATTCAGCATTGT+TGG - chr8_4:29820316-29820335 Msa1322680:intron 40.0%
TCCAACAATGCTGAATCTGT+TGG + chr8_4:29820320-29820339 None:intergenic 40.0%
!! TTGGAATTTGGCTTGCTGTT+GGG - chr8_4:29820335-29820354 Msa1322680:intron 40.0%
AAAACTCGTAGTCCACCATT+GGG + chr8_4:29820455-29820474 None:intergenic 40.0%
! GGACTACGAGTTTTCTGTAA+AGG - chr8_4:29820461-29820480 Msa1322680:intron 40.0%
! CATTCTTCGCATGGTTTTCA+AGG + chr8_4:29820553-29820572 None:intergenic 40.0%
!!! CAGGGATGTTGTTTTCAGTA+GGG + chr8_4:29820652-29820671 None:intergenic 40.0%
!!! TCAGGGATGTTGTTTTCAGT+AGG + chr8_4:29820653-29820672 None:intergenic 40.0%
ATCAATGATCCTATACGCCT+TGG - chr8_4:29820704-29820723 Msa1322680:CDS 40.0%
GTTCAAACTTGTATAGCAGC+AGG - chr8_4:29820740-29820759 Msa1322680:intron 40.0%
AGGACTATTGCTACAGAATG+TGG - chr8_4:29820806-29820825 Msa1322680:intron 40.0%
CCGAAATTGTTGTCCTTCAA+TGG + chr8_4:29820855-29820874 None:intergenic 40.0%
CTTGTCTACAATGGATATGG+AGG - chr8_4:29820877-29820896 Msa1322680:CDS 40.0%
! ACAATGGAGTGTTTGTCATG+TGG + chr8_4:29821022-29821041 None:intergenic 40.0%
CTCCATTGTAGCTTATCTGA+AGG - chr8_4:29821033-29821052 Msa1322680:CDS 40.0%
! TCTGAAGGATATGTTTGGTG+AGG - chr8_4:29821048-29821067 Msa1322680:CDS 40.0%
! TATGTTTGGTGAGGTTGTTG+CGG - chr8_4:29821057-29821076 Msa1322680:CDS 40.0%
TTCAAGAGATGCTACGAGTT+TGG - chr8_4:29821243-29821262 Msa1322680:CDS 40.0%
GACATCCTTTACCTTAAAGC+CGG - chr8_4:29821614-29821633 Msa1322680:CDS 40.0%
TTGACTGCATATAGAAGGAC+CGG + chr8_4:29821683-29821702 None:intergenic 40.0%
GATACTGAACTACCTTACGA+AGG + chr8_4:29821806-29821825 None:intergenic 40.0%
! CCAATGGTAAAAGCCTTGTA+CGG - chr8_4:29821854-29821873 Msa1322680:CDS 40.0%
GACTTAGTTATGTAGGAGGT+AGG + chr8_4:29821887-29821906 None:intergenic 40.0%
TATTATCAAATGGGGACGTG+CGG - chr8_4:29822052-29822071 Msa1322680:CDS 40.0%
AACAGCCATTATTGTTGCTC+TGG - chr8_4:29822112-29822131 Msa1322680:CDS 40.0%
GATCACCAGAGCAACAATAA+TGG + chr8_4:29822120-29822139 None:intergenic 40.0%
! GCTTTGGGTCAACTTGATTA+TGG - chr8_4:29822264-29822283 Msa1322680:CDS 40.0%
! AATTTTTCTCCCCTTCCAAC+TGG + chr8_4:29822352-29822371 None:intergenic 40.0%
! GCCATGTGGAGGAATATTTT+TGG - chr8_4:29822382-29822401 Msa1322680:CDS 40.0%
GCCAAAAATATTCCTCCACA+TGG + chr8_4:29822386-29822405 None:intergenic 40.0%
TTCATGACAGTTTCAGTACG+AGG + chr8_4:29822796-29822815 None:intergenic 40.0%
GGCAGTAGAAATAAGGCAAA+TGG + chr8_4:29822896-29822915 None:intergenic 40.0%
!! TTTGCCTTATTTCTACTGCC+AGG - chr8_4:29822896-29822915 Msa1322680:CDS 40.0%
!!! TCAGAGGCATTTTAAACAGC+TGG - chr8_4:29822964-29822983 Msa1322680:intron 40.0%
!!! CAGAGGCATTTTAAACAGCT+GGG - chr8_4:29822965-29822984 Msa1322680:intron 40.0%
GTAATCATTGTGCAGTTCCT+TGG - chr8_4:29823026-29823045 Msa1322680:intron 40.0%
TGATGCCAATATTCTGCGAA+AGG + chr8_4:29823322-29823341 None:intergenic 40.0%
CACCGATCATGACATAATAC+AGG + chr8_4:29823359-29823378 None:intergenic 40.0%
TGACGTCAACGCATTAGAAG+TGG + chr8_4:29818192-29818211 None:intergenic 45.0%
GCTAATCCATCGGTCACTAT+AGG + chr8_4:29818568-29818587 None:intergenic 45.0%
ACCGTACCAGCAATAGCAAT+CGG + chr8_4:29818868-29818887 None:intergenic 45.0%
!! ATGGAGTTGAAGGCATTGCA+AGG - chr8_4:29819100-29819119 Msa1322680:intron 45.0%
AAGGAAACTTCGTGTCTCAG+TGG - chr8_4:29819119-29819138 Msa1322680:intron 45.0%
GGTGGAAAATTTGCCACTGA+AGG - chr8_4:29819300-29819319 Msa1322680:CDS 45.0%
TCAGTTAAGGTCACACGAGA+TGG - chr8_4:29819453-29819472 Msa1322680:CDS 45.0%
CAGTTAAGGTCACACGAGAT+GGG - chr8_4:29819454-29819473 Msa1322680:CDS 45.0%
GATATGCAAATCCCATCAGC+AGG + chr8_4:29819552-29819571 None:intergenic 45.0%
GCTGATGGGATTTGCATATC+AGG - chr8_4:29819552-29819571 Msa1322680:intron 45.0%
TCGGGAACCAAAGTGATAGA+TGG - chr8_4:29819657-29819676 Msa1322680:CDS 45.0%
CGGGAACCAAAGTGATAGAT+GGG - chr8_4:29819658-29819677 Msa1322680:CDS 45.0%
ACCAAAGTGATAGATGGGTC+GGG - chr8_4:29819663-29819682 Msa1322680:CDS 45.0%
TGTTGGCATGAGGACTGAAT+GGG - chr8_4:29819704-29819723 Msa1322680:CDS 45.0%
!!! AGTTTTGAATGACGTAGGGG+TGG - chr8_4:29819740-29819759 Msa1322680:intron 45.0%
CCGTTCAGTTTCACCTGTAA+TGG + chr8_4:29819774-29819793 None:intergenic 45.0%
ATTGACCACCATGCAATTGG+AGG + chr8_4:29820126-29820145 None:intergenic 45.0%
!! GTTGGAATTTGGCTTGCTGT+TGG - chr8_4:29820334-29820353 Msa1322680:intron 45.0%
!! TGGAATTTGGCTTGCTGTTG+GGG - chr8_4:29820336-29820355 Msa1322680:intron 45.0%
!! GTCCTTGTTAGTCTTCCCAA+TGG - chr8_4:29820437-29820456 Msa1322680:intron 45.0%
CACCATTGGGAAGACTAACA+AGG + chr8_4:29820442-29820461 None:intergenic 45.0%
!! CTTGTTAGTCTTCCCAATGG+TGG - chr8_4:29820440-29820459 Msa1322680:intron 45.0%
GAAAACTCGTAGTCCACCAT+TGG + chr8_4:29820456-29820475 None:intergenic 45.0%
CAAGATCGACATTCTTCGCA+TGG + chr8_4:29820562-29820581 None:intergenic 45.0%
TCTTTGACACCAAGGCGTAT+AGG + chr8_4:29820716-29820735 None:intergenic 45.0%
! TGGAGTGTTTGTCATGTGGT+AGG + chr8_4:29821018-29821037 None:intergenic 45.0%
CTTCGCAGCTAAGTTCTTGT+TGG + chr8_4:29821554-29821573 None:intergenic 45.0%
! GATTGTCGAGTTGCCAACAT+TGG - chr8_4:29821573-29821592 Msa1322680:CDS 45.0%
GAGTTGCCAACATTGGATAG+TGG - chr8_4:29821580-29821599 Msa1322680:CDS 45.0%
!! CACAACCGGCTTTAAGGTAA+AGG + chr8_4:29821622-29821641 None:intergenic 45.0%
TTACCTTAAAGCCGGTTGTG+TGG - chr8_4:29821622-29821641 Msa1322680:CDS 45.0%
ATATAGAAGGACCGGACATC+CGG + chr8_4:29821675-29821694 None:intergenic 45.0%
GCTCTTCAACATCCTTCGTA+AGG - chr8_4:29821791-29821810 Msa1322680:CDS 45.0%
! CCGTACAAGGCTTTTACCAT+TGG + chr8_4:29821857-29821876 None:intergenic 45.0%
TAACAGCTGTGCAGTTGCTT+TGG - chr8_4:29822248-29822267 Msa1322680:CDS 45.0%
! AACAGCTGTGCAGTTGCTTT+GGG - chr8_4:29822249-29822268 Msa1322680:CDS 45.0%
GCTCACTGACAAGAGCTAAA+GGG + chr8_4:29822300-29822319 None:intergenic 45.0%
TTATCACGAATGCCATGTGG+AGG - chr8_4:29822371-29822390 Msa1322680:CDS 45.0%
CTGTACAGGCAAAATTGCCA+AGG + chr8_4:29823046-29823065 None:intergenic 45.0%
AACCAGAGTTCCAAGTTCAG+AGG + chr8_4:29823071-29823090 None:intergenic 45.0%
GATGTAAGTATTCGCCGTGA+CGG - chr8_4:29823161-29823180 Msa1322680:intron 45.0%
CCTGAATTGTGTGCTAGCTA+TGG + chr8_4:29823209-29823228 None:intergenic 45.0%
CCATAGCTAGCACACAATTC+AGG - chr8_4:29823206-29823225 Msa1322680:intron 45.0%
ACTACACAGGGTCACTGATC+TGG - chr8_4:29818267-29818286 Msa1322680:three_prime_UTR 50.0%
GGATAAGGATCGGAGTACAG+AGG - chr8_4:29818328-29818347 Msa1322680:three_prime_UTR 50.0%
TAAGGATCGGAGTACAGAGG+CGG - chr8_4:29818331-29818350 Msa1322680:three_prime_UTR 50.0%
TGGTGAAGAATCCCCGTAGA+AGG - chr8_4:29818381-29818400 Msa1322680:three_prime_UTR 50.0%
TGCAAGTCGGAACCTTCTAC+GGG + chr8_4:29818396-29818415 None:intergenic 50.0%
CTGCAAGTCGGAACCTTCTA+CGG + chr8_4:29818397-29818416 None:intergenic 50.0%
! TAGAAGGTTCCGACTTGCAG+CGG - chr8_4:29818397-29818416 Msa1322680:three_prime_UTR 50.0%
TTTCGAGATCCGCTGCAAGT+CGG + chr8_4:29818409-29818428 None:intergenic 50.0%
! TTTGCCCCGATTGCTATTGC+TGG - chr8_4:29818859-29818878 Msa1322680:intron 50.0%
CGTACCAGCAATAGCAATCG+GGG + chr8_4:29818866-29818885 None:intergenic 50.0%
CCGTACCAGCAATAGCAATC+GGG + chr8_4:29818867-29818886 None:intergenic 50.0%
! CCCGATTGCTATTGCTGGTA+CGG - chr8_4:29818864-29818883 Msa1322680:intron 50.0%
GGGATCAAGTACCTGCTGAT+GGG - chr8_4:29819538-29819557 Msa1322680:intron 50.0%
CCAAAGTGATAGATGGGTCG+GGG - chr8_4:29819664-29819683 Msa1322680:CDS 50.0%
AAGATGCTAGTGGCAGCTGT+TGG - chr8_4:29819687-29819706 Msa1322680:CDS 50.0%
CTGTTGGCATGAGGACTGAA+TGG - chr8_4:29819703-29819722 Msa1322680:CDS 50.0%
GTTGGCATGAGGACTGAATG+GGG - chr8_4:29819705-29819724 Msa1322680:CDS 50.0%
TTTGAATGACGTAGGGGTGG+AGG - chr8_4:29819743-29819762 Msa1322680:intron 50.0%
ACGGCCAATGGTAAACCTTC+TGG + chr8_4:29819978-29819997 None:intergenic 50.0%
AGGTTAAGTGTCACGGCCAA+TGG + chr8_4:29819990-29820009 None:intergenic 50.0%
! CAAATGATAGGGCACTCGTG+AGG - chr8_4:29820033-29820052 Msa1322680:intron 50.0%
GACAGTGACCTCCAATTGCA+TGG - chr8_4:29820115-29820134 Msa1322680:intron 50.0%
AGTGACCTCCAATTGCATGG+TGG - chr8_4:29820118-29820137 Msa1322680:intron 50.0%
!! GGAATTTGGCTTGCTGTTGG+GGG - chr8_4:29820337-29820356 Msa1322680:intron 50.0%
!! GAATTTGGCTTGCTGTTGGG+GGG - chr8_4:29820338-29820357 Msa1322680:intron 50.0%
GAACGACGTCTTTGACACCA+AGG + chr8_4:29820724-29820743 None:intergenic 50.0%
AGCAGGAGTAACCATTGCCA+TGG - chr8_4:29820757-29820776 Msa1322680:intron 50.0%
GTAACCATTGCCATGGTCAC+TGG - chr8_4:29820764-29820783 Msa1322680:intron 50.0%
CATATCATCGCCAGTGACCA+TGG + chr8_4:29820777-29820796 None:intergenic 50.0%
GTTGTTGCGGTTACTGGTGA+TGG - chr8_4:29821070-29821089 Msa1322680:CDS 50.0%
GCACACATTGGAGTTGCCAT+GGG - chr8_4:29821121-29821140 Msa1322680:CDS 50.0%
GGAGTTGCCATGGGATTATC+AGG - chr8_4:29821130-29821149 Msa1322680:CDS 50.0%
CTCTGTGCCTGATAATCCCA+TGG + chr8_4:29821140-29821159 None:intergenic 50.0%
CATGGGATTATCAGGCACAG+AGG - chr8_4:29821138-29821157 Msa1322680:CDS 50.0%
AGCAACTGCACAGCTGTTAG+CGG + chr8_4:29822247-29822266 None:intergenic 50.0%
TGACAAGAGCTAAAGGGCAG+AGG + chr8_4:29822294-29822313 None:intergenic 50.0%
GGCTCACTGACAAGAGCTAA+AGG + chr8_4:29822301-29822320 None:intergenic 50.0%
CTTATGAAGAGGCCTCCAGT+TGG - chr8_4:29822334-29822353 Msa1322680:CDS 50.0%
! TTTTCTCCCCTTCCAACTGG+AGG + chr8_4:29822349-29822368 None:intergenic 50.0%
!! CAAGTTCAGAGGCACTGTAC+AGG + chr8_4:29823060-29823079 None:intergenic 50.0%
CTGTACAGTGCCTCTGAACT+TGG - chr8_4:29823058-29823077 Msa1322680:intron 50.0%
TGCCTCTGAACTTGGAACTC+TGG - chr8_4:29823066-29823085 Msa1322680:intron 50.0%
TGTGCTAGCTATGGTTGTGC+AGG + chr8_4:29823200-29823219 None:intergenic 50.0%
GGGATTCTTCACCAGCGAGA+CGG + chr8_4:29818375-29818394 None:intergenic 55.0%
GCAAGTCGGAACCTTCTACG+GGG + chr8_4:29818395-29818414 None:intergenic 55.0%
TCTCAGTGGCAGCTGGTGTT+AGG - chr8_4:29819133-29819152 Msa1322680:intron 55.0%
! CTCAGTGGCAGCTGGTGTTA+GGG - chr8_4:29819134-29819153 Msa1322680:intron 55.0%
GGGGATCAAGTACCTGCTGA+TGG - chr8_4:29819537-29819556 Msa1322680:intron 55.0%
CCCCGACCCATCTATCACTT+TGG + chr8_4:29819667-29819686 None:intergenic 55.0%
TAGTGGCAGCTGTTGGCATG+AGG - chr8_4:29819694-29819713 Msa1322680:CDS 55.0%
GGTGGAGGAAACGCCATTAC+AGG - chr8_4:29819758-29819777 Msa1322680:intron 55.0%
ATCGCCAGTGACCATGGCAA+TGG + chr8_4:29820771-29820790 None:intergenic 55.0%
GGTGAGGTTGTTGCGGTTAC+TGG - chr8_4:29821064-29821083 Msa1322680:CDS 55.0%
TGATGCTCCTGCACTGCATG+AGG - chr8_4:29821099-29821118 Msa1322680:CDS 55.0%
ATGTGTGCCTCATGCAGTGC+AGG + chr8_4:29821109-29821128 None:intergenic 55.0%
GCACTGCATGAGGCACACAT+TGG - chr8_4:29821109-29821128 Msa1322680:CDS 55.0%
GGCACACATTGGAGTTGCCA+TGG - chr8_4:29821120-29821139 Msa1322680:CDS 55.0%
! TGGCCACACAACCGGCTTTA+AGG + chr8_4:29821628-29821647 None:intergenic 55.0%
! TAGCAGGTTGGCCACACAAC+CGG + chr8_4:29821636-29821655 None:intergenic 55.0%
GTTGTGTGGCCAACCTGCTA+CGG - chr8_4:29821636-29821655 Msa1322680:CDS 55.0%
TAAGTGGCTCCGTAGCAGGT+TGG + chr8_4:29821648-29821667 None:intergenic 55.0%
AGTGTAAGTGGCTCCGTAGC+AGG + chr8_4:29821652-29821671 None:intergenic 55.0%
CTACGGAGCCACTTACACTC+CGG - chr8_4:29821653-29821672 Msa1322680:CDS 55.0%
CCACTTACACTCCGGATGTC+CGG - chr8_4:29821661-29821680 Msa1322680:CDS 55.0%
! GGTAGGCTGCTTTCCGTACA+AGG + chr8_4:29821870-29821889 None:intergenic 55.0%
GCAACTGCACAGCTGTTAGC+GGG + chr8_4:29822246-29822265 None:intergenic 55.0%
TGAAGAGGCCTCCAGTTGGA+AGG - chr8_4:29822338-29822357 Msa1322680:CDS 55.0%
GAAGAGGCCTCCAGTTGGAA+GGG - chr8_4:29822339-29822358 Msa1322680:CDS 55.0%
AAGAGGCCTCCAGTTGGAAG+GGG - chr8_4:29822340-29822359 Msa1322680:CDS 55.0%
TATTCGCCGTGACGGTTACC+AGG - chr8_4:29823169-29823188 Msa1322680:intron 55.0%
! GAAGTGCCTGGTAACCGTCA+CGG + chr8_4:29823178-29823197 None:intergenic 55.0%
!! ATGGTTGTGCAGGAAGTGCC+TGG + chr8_4:29823190-29823209 None:intergenic 55.0%
CTTCGTGTCTCAGTGGCAGC+TGG - chr8_4:29819126-29819145 Msa1322680:intron 60.0%
TGGGTCGGGGAAGATGCTAG+TGG - chr8_4:29819677-29819696 Msa1322680:CDS 60.0%
CCGGACATCCGGAGTGTAAG+TGG + chr8_4:29821664-29821683 None:intergenic 60.0%
GTACAGAGGCGGTGAGCCGT+TGG - chr8_4:29818342-29818361 Msa1322680:three_prime_UTR 65.0%
GCGAGACGGCGCTTCTCCAA+CGG + chr8_4:29818361-29818380 None:intergenic 65.0%
!! TTGGAGAAGCGCCGTCTCGC+TGG - chr8_4:29818361-29818380 Msa1322680:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 29818172 29823559 29818172 ID=Msa1322680;Name=Msa1322680
chr8_4 mRNA 29818172 29823559 29818172 ID=Msa1322680-mRNA-1;Parent=Msa1322680;Name=Msa1322680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=124|1|1|1|1|1|7|348|1023
chr8_4 exon 29818172 29818813 29818172 ID=Msa1322680-mRNA-1:exon:9976;Parent=Msa1322680-mRNA-1
chr8_4 exon 29819197 29819495 29819197 ID=Msa1322680-mRNA-1:exon:9975;Parent=Msa1322680-mRNA-1
chr8_4 exon 29819567 29819738 29819567 ID=Msa1322680-mRNA-1:exon:9974;Parent=Msa1322680-mRNA-1
chr8_4 exon 29820572 29820730 29820572 ID=Msa1322680-mRNA-1:exon:9973;Parent=Msa1322680-mRNA-1
chr8_4 exon 29820812 29822733 29820812 ID=Msa1322680-mRNA-1:exon:9972;Parent=Msa1322680-mRNA-1
chr8_4 exon 29822851 29822917 29822851 ID=Msa1322680-mRNA-1:exon:9971;Parent=Msa1322680-mRNA-1
chr8_4 exon 29823277 29823559 29823277 ID=Msa1322680-mRNA-1:exon:9970;Parent=Msa1322680-mRNA-1
chr8_4 five_prime_UTR 29823436 29823559 29823436 ID=Msa1322680-mRNA-1:five_prime_utr;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29823277 29823435 29823277 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29822851 29822917 29822851 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29820812 29822733 29820812 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29820572 29820730 29820572 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29819567 29819738 29819567 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29819197 29819495 29819197 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 CDS 29818520 29818813 29818520 ID=Msa1322680-mRNA-1:cds;Parent=Msa1322680-mRNA-1
chr8_4 three_prime_UTR 29818172 29818519 29818172 ID=Msa1322680-mRNA-1:three_prime_utr;Parent=Msa1322680-mRNA-1
Gene Sequence

>Msa1322680

ATGGAGGAATTTCTGGAAGACTTCGAATTAGTGGATAAGGATCGGAGTACAGAGGCGGTGAGCCGTTGGAGAAGCGCCGTCTCGCTGGTGAAGAATCCCCGTAGAAGGTTCCGACTTGCAGCGGATCTCGAAAAACGTGCCCTATTACAAGAAAAGCAGGAAAAGCTTCGGGCTGTACTAAATGTTCAAAGAGCAGCTTTACATTTTGCCCCGATTGCTATTGCTGATCCTGATTATGTTGAAGTGCATGTTGATGGTTTTGACATTGATCCAGATTCAATTGCATCTCTTGTTCATAACTATGATAGCAATGGTTTCAAAAAAATTAATGGAGTTGAAGGCATTGCAAGGAAACTTCGTGTCTCAGTGGCAGCTGGTGTTAGGGAAAATAGCCTAAATACCCGGCAACACTATTTTGGGTTTAACCGCTATGCAGAAAAACATGCGAAACCTTTTATTAAATTTGTGTGGGAATCAATGCTAGACTCAACACTCATTTTTCTTATGGTTTGTTCCATAGTTTTAATAGGTGGAAAATTTGCCACTGAAGGGTTGCTAGTAAATGTGTATGATGAGGTGGGTATTATACTTGGTGTATTCTTTTTGGTCGTCTTTACATCGGTCATTGATTACCATCAATCATTGAAGTTCTGCGAATGGGACAGAGAGAACAAGAACATTTCAGTTAAGGTCACACGAGATGGGAAAAGACAGAAGATATCGATTTATGATCTCGTAGTAGGAGACATTGTTCATTTGTCAATTGGGGATCAAGTACCTGCTGATGGGATTTGCATATCAGGAAGTAATTTACACATCGACGAATCAAGTTTAACTGGTCAGGTTGACCCAGTTTATGTAAATCAAGAAAACCCTTTTCTACTTTCGGGAACCAAAGTGATAGATGGGTCGGGGAAGATGCTAGTGGCAGCTGTTGGCATGAGGACTGAATGGGGAAAGTTAGTAGAAGTTTTGAATGACGTAGGGGTGGAGGAAACGCCATTACAGGTGAAACTGAACGGAGTTGCTACTATTGTTGGTAAGATTGGCTTGAGTTTTGCTCTTCTTACATTAGCTGTGTTGGTGATACAATTTCTTGTGTATAAAGCAACTCGCGGAGATTTTACTAATTGGTCCTCAAAAGATGCTATGAAGCTGCTGAACTACATTAATATACTTGTGACAATGATAGTCATTGCTGTTCCAGAAGGTTTACCATTGGCCGTGACACTTAACCTTGCTTTTGCAACGAAAAGTTTAACAAATGATAGGGCACTCGTGAGGCATCTTTCTGCATGTGAAGCAATGGGTTCTGCCAGTTATATTTGCTTAGATAAAACAGGGACAGTGACCTCCAATTGCATGGTGGTCAATAAACTATGGATATCTGGAGAAGTTGTGGAGATGAAAGATAATAGGAATGGAAATAAACTGAAAGGAAAGATATCTGAAGAAGTTCTGAACATACTTTTGCAGGCTTTATTCCAAAATAATGCTTCCGAAATGGTTAAGGATAAACAAGGAAAAACCACAATATTGGGAACTCCAACAGATTCAGCATTGTTGGAATTTGGCTTGCTGTTGGGGGGTAATTTTGATGTCCAATGCCAATTGTATAGGAAACTTAAGATTGAGCCTTTTAATCCTGTTTACAAGATGATGACAGTCCTTGTTAGTCTTCCCAATGGTGGACTACGAGTTTTCTGTAAAGGTGCTTCTGAAATAATATTTAAAATGTGTGAAAAAATCATCGACTGCAATGGAGTAGCTGTTGATTTCCTTGAAAACCATGCGAAGAATGTCGATCTTGTTCTAAAAGATTTTGCCTCTGAACCTTTGAGAACTATTTCTTTAGCTTACAAAGATATAAATGTAATCCCTACTGAAAACAACATCCCTGATAATGGCTATACACTGATAGCCATTCTAGGAATCAATGATCCTATACGCCTTGGTGTCAAAGACGTCGTTCAAACTTGTATAGCAGCAGGAGTAACCATTGCCATGGTCACTGGCGATGATATGAATATAGCTAGGACTATTGCTACAGAATGTGGTATACTCACCAATAATGGTTTAACCATTGAAGGACAACAATTTCGGAACTTGTCTACAATGGATATGGAGGTTACCATACCAAAAATTCAGGTGATGGCGCGATTCCTACCACATGACAAACACTCCATTGTAGCTTATCTGAAGGATATGTTTGGTGAGGTTGTTGCGGTTACTGGTGATGGAATCAGTGATGCTCCTGCACTGCATGAGGCACACATTGGAGTTGCCATGGGATTATCAGGCACAGAGATTGCCAAAGAAAATGCTGATATAATTTTAATGGACGACAACATCACTACTATTGTCAATATTATCAAATGGGGACGTGCGGTATATATAAACATTCAAAAATTAGTGCAGTTTCAGTTAACAGCCATTATTGTTGCTCTGGTGATCAACTTTATTTCTGCTTCTGTCACAGGTTATGTCCCGCTAACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACATCCTCTGCCCTTTAGCTCTTGTCAGTGAGCCACTTAACGATGAACTTATGAAGAGGCCTCCAGTTGGAAGGGGAGAAAAATTTATCACGAATGCCATGTGGAGGAATATTTTTGGCCAAAGCATATATCAAGTTATTGTCCTTATGGTTCTTAATTTTCAAGGGAAGAATATACTTGGTATAAGTGGTTCAAATGCAACTGATGTGCTTAGAACTTTGATCTTCAACTCCTTTATATTTTTTCAGGTATTCAATGAGATAAACTGCAGAGAGATAGAGAAGATAAACATTTTCAGAGGCATTTTAAACAGCTGGGCATTTTCGGTCATAATTTTCTCAACAGTTGCAATTCAAGTAATCATTGTGCAGTTCCTTGGCAATTTTGCCTGTACAGTGCCTCTGAACTTGGAACTCTGGTTAATTAGTGTTTTAATTGGTGCTACTAGCATGCTTATAGCTTGTCTTCTGAAGTGCTTCCCAATTGAAAAAGATGTAAGTATTCGCCGTGACGGTTACCAGGCACTTCCTGCACAACCATAG
Protein sequence

>Msa1322680

MEEFLEDFELVDKDRSTEAVSRWRSAVSLVKNPRRRFRLAADLEKRALLQEKQEKLRAVLNVQRAALHFAPIAIADPDYVEVHVDGFDIDPDSIASLVHNYDSNGFKKINGVEGIARKLRVSVAAGVRENSLNTRQHYFGFNRYAEKHAKPFIKFVWESMLDSTLIFLMVCSIVLIGGKFATEGLLVNVYDEVGIILGVFFLVVFTSVIDYHQSLKFCEWDRENKNISVKVTRDGKRQKISIYDLVVGDIVHLSIGDQVPADGICISGSNLHIDESSLTGQVDPVYVNQENPFLLSGTKVIDGSGKMLVAAVGMRTEWGKLVEVLNDVGVEETPLQVKLNGVATIVGKIGLSFALLTLAVLVIQFLVYKATRGDFTNWSSKDAMKLLNYINILVTMIVIAVPEGLPLAVTLNLAFATKSLTNDRALVRHLSACEAMGSASYICLDKTGTVTSNCMVVNKLWISGEVVEMKDNRNGNKLKGKISEEVLNILLQALFQNNASEMVKDKQGKTTILGTPTDSALLEFGLLLGGNFDVQCQLYRKLKIEPFNPVYKMMTVLVSLPNGGLRVFCKGASEIIFKMCEKIIDCNGVAVDFLENHAKNVDLVLKDFASEPLRTISLAYKDINVIPTENNIPDNGYTLIAILGINDPIRLGVKDVVQTCIAAGVTIAMVTGDDMNIARTIATECGILTNNGLTIEGQQFRNLSTMDMEVTIPKIQVMARFLPHDKHSIVAYLKDMFGEVVAVTGDGISDAPALHEAHIGVAMGLSGTEIAKENADIILMDDNITTIVNIIKWGRAVYINIQKLVQFQLTAIIVALVINFISASVTGYVPLTAVQLLWVNLIMDILCPLALVSEPLNDELMKRPPVGRGEKFITNAMWRNIFGQSIYQVIVLMVLNFQGKNILGISGSNATDVLRTLIFNSFIFFQVFNEINCREIEKINIFRGILNSWAFSVIIFSTVAIQVIIVQFLGNFACTVPLNLELWLISVLIGATSMLIACLLKCFPIEKDVSIRRDGYQALPAQP*