AlfalfaGEDB | Msa1436590

M. sativa cultivar zhongmu-4 / Msa1436590

KEGG: K21596
GO: GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03859.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436590	XP_003609751.2	98.377	924	15	0	1	924	1	924	0.0	1905

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436590	sp\|O23463\|CMTA5_ARATH	57.235	933	370	10	3	917	1	922	0.0	1037

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436590	G7JMT3	98.377	924	15	0	1	924	1	924	0.0	1905

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1436590	TF	CAMTA

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0082260	Msa1436590	0.808757	2.648082e-50	-8.615850e-47
Msa0174790	Msa1436590	0.811964	5.378492e-51	-8.615850e-47
Msa0282780	Msa1436590	0.816220	6.186997e-52	-8.615850e-47
Msa0430830	Msa1436590	0.800008	1.762593e-48	-8.615850e-47
Msa0880800	Msa1436590	0.996628	4.957993e-230	-8.615850e-47
Msa1175100	Msa1436590	0.805024	1.629695e-49	-8.615850e-47
Msa1218570	Msa1436590	0.997514	6.660588e-244	-8.615850e-47
Msa1234470	Msa1436590	0.805749	1.148792e-49	-8.615850e-47
Msa1283810	Msa1436590	0.804812	1.805185e-49	-8.615850e-47
Msa1306960	Msa1436590	0.804347	2.256038e-49	-8.615850e-47

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436590	MtrunA17_Chr4g0068161	98.377	924	15	0	1	924	1	924	0.0	1905
Msa1436590	MtrunA17_Chr2g0294711	71.227	921	252	3	1	920	1	909	0.0	1365
Msa1436590	MtrunA17_Chr2g0279141	31.176	1020	556	25	25	917	13	1013	4.70e-132	422
Msa1436590	MtrunA17_Chr8g0382191	32.857	630	388	13	310	910	432	1055	4.29e-91	312
Msa1436590	MtrunA17_Chr8g0382191	55.725	131	58	0	25	155	9	139	3.50e-41	164
Msa1436590	MtrunA17_Chr8g0377501	35.126	595	323	19	338	907	387	943	2.42e-84	291
Msa1436590	MtrunA17_Chr8g0377501	48.276	145	73	1	24	166	13	157	5.55e-39	157
Msa1436590	MtrunA17_Chr4g0050401	32.039	618	362	15	316	897	386	981	2.30e-79	278
Msa1436590	MtrunA17_Chr4g0050401	54.032	124	57	0	25	148	13	136	7.66e-37	150
Msa1436590	MtrunA17_Chr3g0122351	33.167	603	338	17	347	919	368	935	5.49e-78	273

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436590	AT3G16940.1	55.827	901	327	8	9	907	7	838	0.0	983
Msa1436590	AT3G16940.3	55.227	880	323	8	30	907	1	811	0.0	944
Msa1436590	AT3G16940.2	54.523	796	296	7	9	802	7	738	0.0	840
Msa1436590	AT5G09410.1	31.038	944	559	16	25	897	16	938	1.45e-130	417
Msa1436590	AT5G09410.3	30.155	965	558	17	25	897	75	1015	2.59e-121	395
Msa1436590	AT2G22300.3	35.072	556	336	9	367	916	402	938	1.85e-89	306
Msa1436590	AT2G22300.3	69.231	78	24	0	71	148	1	78	7.92e-29	125
Msa1436590	AT2G22300.2	35.072	556	336	9	367	916	460	996	3.77e-89	306
Msa1436590	AT2G22300.2	57.778	135	57	0	14	148	2	136	1.62e-44	175
Msa1436590	AT2G22300.1	35.072	556	336	9	367	916	460	996	3.77e-89	306

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 250 sgRNAs with CRISPR-Local

Find 639 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTAAAAGCAGGAAAA+TGG	0.263388	tig0027944:+51674	Msa1436590:three_prime_UTR
AAAGATAGTAGTAGTATATG+GGG	0.616346	tig0027944:+51443	Msa1436590:three_prime_UTR
AAAGCTAAAAGCAGGAAAAT+GGG	0.422038	tig0027944:+51675	Msa1436590:three_prime_UTR
AAAGTAACAACTTGGCTGAT+AGG	0.349913	tig0027944:-46692	None:intergenic
AAATTCCGAGAACCTTACCG+AGG	0.753280	tig0027944:+50312	Msa1436590:CDS
AACAATATCGTAAAATCATT+TGG	0.371099	tig0027944:+50822	Msa1436590:CDS
AACACCTCTGCTGTGCCTAA+CGG	0.566570	tig0027944:+45365	Msa1436590:CDS
AACATCTACGAACAAAATTT+GGG	0.354515	tig0027944:-43298	None:intergenic
AACCATCCTGTCTCTTCAAG+TGG	0.583378	tig0027944:+45817	Msa1436590:CDS
AACCTCTGAAGATTATAATC+AGG	0.360208	tig0027944:-41898	None:intergenic

Showing 1 to 10 of 250 entries

Previous1 2 3 4 5…25Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGATGAAATATGAAAAGGG+TGG	-	tig0027944:41831-41850	None:intergenic	30.0%
CGCTGTACCAAAAAAAAAAA+AGG	-	tig0027944:41874-41893	None:intergenic	30.0%
TAGGGCATATGAATAGAAAA+CGG	+	tig0027944:42289-42308	Msa1436590:intron	30.0%
AACAGGTAAATAAGTAGTAC+AGG	-	tig0027944:42471-42490	None:intergenic	30.0%
ATACTTGTGATTACAAAGCA+TGG	-	tig0027944:42587-42606	None:intergenic	30.0%
ACAATCTACGAGAAAATGAA+TGG	-	tig0027944:42722-42741	None:intergenic	30.0%
GCTCTGATTCATAATTATCA+TGG	-	tig0027944:42834-42853	None:intergenic	30.0%
AACTGGAAAAAGAAAAAGGA+TGG	+	tig0027944:43072-43091	Msa1436590:CDS	30.0%
ATCCATGTATATTATGCACA+TGG	+	tig0027944:43266-43285	Msa1436590:CDS	30.0%
AAACCTACATTATATACCCA+AGG	-	tig0027944:43662-43681	None:intergenic	30.0%

Showing 1 to 10 of 639 entries

Previous1 2 3 4 5…64Next

Chromosome	Type	Strat	End	Strand	Name
tig0027944	gene	41654	51698	41654	ID=Msa1436590;Name=Msa1436590
tig0027944	mRNA	41654	51698	41654	ID=Msa1436590-mRNA-1;Parent=Msa1436590;Name=Msa1436590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=171\|1\|1\|1\|0.92\|0.85\|14\|436\|924
tig0027944	exon	41654	41789	41654	ID=Msa1436590-mRNA-1:exon:10267;Parent=Msa1436590-mRNA-1
tig0027944	exon	41892	41996	41892	ID=Msa1436590-mRNA-1:exon:10268;Parent=Msa1436590-mRNA-1
tig0027944	exon	42518	42643	42518	ID=Msa1436590-mRNA-1:exon:10269;Parent=Msa1436590-mRNA-1
tig0027944	exon	43013	43128	43013	ID=Msa1436590-mRNA-1:exon:10270;Parent=Msa1436590-mRNA-1
tig0027944	exon	43248	43336	43248	ID=Msa1436590-mRNA-1:exon:10271;Parent=Msa1436590-mRNA-1
tig0027944	exon	43455	43500	43455	ID=Msa1436590-mRNA-1:exon:10272;Parent=Msa1436590-mRNA-1
tig0027944	exon	44720	44837	44720	ID=Msa1436590-mRNA-1:exon:10273;Parent=Msa1436590-mRNA-1
tig0027944	exon	45270	45389	45270	ID=Msa1436590-mRNA-1:exon:10274;Parent=Msa1436590-mRNA-1
tig0027944	exon	45479	45537	45479	ID=Msa1436590-mRNA-1:exon:10275;Parent=Msa1436590-mRNA-1
tig0027944	exon	45673	46089	45673	ID=Msa1436590-mRNA-1:exon:10276;Parent=Msa1436590-mRNA-1
tig0027944	exon	46512	47209	46512	ID=Msa1436590-mRNA-1:exon:10277;Parent=Msa1436590-mRNA-1
tig0027944	exon	50084	50630	50084	ID=Msa1436590-mRNA-1:exon:10278;Parent=Msa1436590-mRNA-1
tig0027944	exon	50794	51102	50794	ID=Msa1436590-mRNA-1:exon:10279;Parent=Msa1436590-mRNA-1
tig0027944	exon	51203	51698	51203	ID=Msa1436590-mRNA-1:exon:10280;Parent=Msa1436590-mRNA-1
tig0027944	five_prime_UTR	41654	41789	41654	ID=Msa1436590-mRNA-1:five_prime_utr;Parent=Msa1436590-mRNA-1
tig0027944	five_prime_UTR	41892	41926	41892	ID=Msa1436590-mRNA-1:five_prime_utr;Parent=Msa1436590-mRNA-1
tig0027944	CDS	41927	41996	41927	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	42518	42643	42518	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	43013	43128	43013	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	43248	43336	43248	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	43455	43500	43455	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	44720	44837	44720	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	45270	45389	45270	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	45479	45537	45479	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	45673	46089	45673	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	46512	47209	46512	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	50084	50630	50084	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	50794	51102	50794	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	CDS	51203	51262	51203	ID=Msa1436590-mRNA-1:cds;Parent=Msa1436590-mRNA-1
tig0027944	three_prime_UTR	51263	51698	51263	ID=Msa1436590-mRNA-1:three_prime_utr;Parent=Msa1436590-mRNA-1

Gene Sequence

>Msa1436590

ATGATGATGGCAAATAACTTACCGGGTCAACTTGTTGGATCAGAGATACATGGATTCCACACATTGCAAGACCTCGATGTTGCGAGCATTATGGAGGAAGCAAGAACGAGATGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATCACAAGTATTTTACCATCAATGTCAAGCCAATGAATTTGCCTAAAAGTGGTACTATTGTATTGTTTGACCGCAAGATGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCTAGATAACCCAAATTTTGTTCGTAGATGTTATTGGCTGCTTGACAAGAGCCTGGAACACATCGTCCTTGTTCATTACCGTGAAACACAAGAGTTTCAGGGTTCTCCAATCACTCCCGTAAATTCAAACTCTACTACAGCCTCTGACCCATCTGCACCATGGATTCTGTCAGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTGGGGAGATTAATGATAATATAACAGTCAAAAGCCATGAACTGAGGCTTCACGAGCTTAATACACTTGAATGGGATGACCTAGTCGTAGCAAACGATCTTAACACCTCTGCTGTGCCTAACGGAGGAAAAGTTCCCTATTTTGATCAACAAAATCAAATTTTACTGAATGACAGTTTTAGCAATGTAGCCAACAATGCATCTGCAGAAATTTGTACGTTCAATAATTTAACCCAGCCAATTGCAGTGAGCAATAGTATTCCATACAATTTTTCAGAAAGTGTTACTCTTCAGACAATTAGCAATCAAGGATATCGAAATGAGCAGAGGAACCATCCTGTCTCTTCAAGTGGTGTTGATTCCTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTTGGATCCTCAGTTTCATCCGTTAATGAACCATATTCATCTCTGGTAGTGGATAATCAGCAACTTTCCCTTCCAGAACAAGTATTTAATCTTACTGATGTGTCCCCTGCGTGGGTGTCTTCCACAGAGAAATCAAAGATCCTAGTGACTGGACTCTTTCATAAAGACTATCTGCACCTCCCAAAGTCCAATCTAATGTGTGTATGTGGTGATGCAAGTGTTCCTGCAGAAATTGTTCAGGATGGGGTCTACCGTTGCTGGGTACCACCGCATTCTCCGGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAACCCTATCAGCCAAGTTGTTACTTTTGAGTATCGTACTCCTGTTTTGCATGATCCAGTAGCTTCTATGGAAGAGAAGAACAACTGGGACGAGTTTCAACTTCAAATGAGGCTTTCTTATTTGCTCTTTGCTAAACAACAGAGTCTTGATGTCATCTCTAGTAAAGTATCACTTAGCAGACTAAAGGAGGCAAGGGAATTCTCCTTAAAGACATCATTTATTTCCAATACTTGGCAATACTTAATGAAGTCAACTTTAGACAACAAAATTCCATTTTCGCAAGCTAAAGATGCCCTGTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTCAGAAAAAATTGTTTTAGGATGCAAGACTACTGAATATGATGCGCAAGGACAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCAATTACTTTATTTTCATGGTCAGGCTTATCGCTAGATTTCCGGGATAAATTTGGATGGACGGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTGCTGTCAGCTGGGGCAAAGCCAAACTTGGTCACGGATCCAACTCACCAAAACCCTGGGGGATGTACTGCCGCTGATCTTGCTTATACGAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCGAGAACCTTACCGAGGAGCAGCTCTATGTGAAAGATACACTGGCAGCTTACCGGACAGCTGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGCAGCATTCCTTAAAGTTACAAACAGAGGCGATTGAGTTTTCCAGCCCAGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAGACAAAGAAAGTGATGGTTGCTGCTGCTCGAATACAACATAGATTCCGTACATGGAAGATTCGTAGAGATTTTCTCAACATGCGCCATCAAGCTATCAAGATTCAAGCTGCTTTCAGGTGTTTTCAACAACGGAAACAATATCGTAAAATCATTTGGTCAGTTGGCGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGTGGGCTCCGGCTTAATACCGAGGAAGAATCGGGAGATCAGAATCAGCAAAGTGATGCAGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCCGAAGAACGTGTCGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCGCAAGAAGATTATAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATATGAAAAAATGCTTAGTAATGAAGTTGACATGAAAATGAAGAGGTAG

Protein sequence

>Msa1436590

MMMANNLPGQLVGSEIHGFHTLQDLDVASIMEEARTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPNFVRRCYWLLDKSLEHIVLVHYRETQEFQGSPITPVNSNSTTASDPSAPWILSEEIDSGTKTAYAGEINDNITVKSHELRLHELNTLEWDDLVVANDLNTSAVPNGGKVPYFDQQNQILLNDSFSNVANNASAEICTFNNLTQPIAVSNSIPYNFSESVTLQTISNQGYRNEQRNHPVSSSGVDSLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSVSSVNEPYSSLVVDNQQLSLPEQVFNLTDVSPAWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDASVPAEIVQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVTFEYRTPVLHDPVASMEEKNNWDEFQLQMRLSYLLFAKQQSLDVISSKVSLSRLKEAREFSLKTSFISNTWQYLMKSTLDNKIPFSQAKDALFGIALKNRLKEWLSEKIVLGCKTTEYDAQGQSVIHLCAILEYTWAITLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYVKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAIEFSSPEAEARKIVAAMKIQHAFRNFETKKVMVAAARIQHRFRTWKIRRDFLNMRHQAIKIQAAFRCFQQRKQYRKIIWSVGVVEKAVLRWRLKRKGFRGLRLNTEEESGDQNQQSDAEEEFFRTGRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKMLSNEVDMKMKR*