Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328300 | AES91885.1 | 92.191 | 461 | 12 | 7 | 1 | 453 | 1 | 445 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328300 | G7JLJ0 | 92.191 | 461 | 12 | 7 | 1 | 453 | 1 | 445 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0389950 | Msa1328300 | 0.801276 | 9.720437e-49 | -8.615850e-47 |
| Msa0430300 | Msa1328300 | 0.807644 | 4.569632e-50 | -8.615850e-47 |
| Msa0481140 | Msa1328300 | 0.859602 | 3.692063e-63 | -8.615850e-47 |
| Msa1003740 | Msa1328300 | 0.833505 | 5.132793e-56 | -8.615850e-47 |
| Msa1003800 | Msa1328300 | 0.847294 | 1.266615e-59 | -8.615850e-47 |
| Msa1003930 | Msa1328300 | 0.833581 | 4.913402e-56 | -8.615850e-47 |
| Msa1216090 | Msa1328300 | 0.804423 | 2.175702e-49 | -8.615850e-47 |
| Msa1217910 | Msa1328300 | 0.873967 | 9.747417e-68 | -8.615850e-47 |
| Msa0483910 | Msa1328300 | 0.852646 | 4.026087e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328300 | MtrunA17_Chr4g0067481 | 92.191 | 461 | 12 | 7 | 1 | 453 | 7 | 451 | 0.0 | 625 |
| Msa1328300 | MtrunA17_Chr2g0295691 | 47.292 | 480 | 134 | 21 | 1 | 453 | 1 | 388 | 6.36e-86 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328300 | AT3G06868.1 | 40.088 | 454 | 174 | 12 | 10 | 452 | 2 | 368 | 4.94e-69 | 224 |
| Msa1328300 | AT5G49100.1 | 77.273 | 44 | 10 | 0 | 15 | 58 | 6 | 49 | 5.10e-18 | 86.3 |
Find 72 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCAGCATCTGTTTC+TGG | 0.093012 | 8_4:-45919141 | Msa1328300:CDS |
| ATTCATCAACTTCATCTTAT+TGG | 0.130948 | 8_4:-45918495 | Msa1328300:CDS |
| TTCATCAACTTCATCTTATT+GGG | 0.273852 | 8_4:-45918494 | Msa1328300:CDS |
| TTGTTGTTGCTGCTGCTATT+AGG | 0.296691 | 8_4:+45918820 | None:intergenic |
| GAAAGAATTTCAACTGGGTT+TGG | 0.321464 | 8_4:-45918712 | Msa1328300:CDS |
| GATGGCATAGCAGATAAATT+TGG | 0.321817 | 8_4:+45918262 | None:intergenic |
| ATAGAGTTACTACCTCTTCT+TGG | 0.326180 | 8_4:+45919066 | None:intergenic |
| CTTAAGGAAAAGTGTTGTTC+AGG | 0.342745 | 8_4:-45918898 | Msa1328300:CDS |
| GCTCTTAGAATTCAAACTCT+TGG | 0.374222 | 8_4:+45918948 | None:intergenic |
| TTCTTTGAAAGAATTTCAAC+TGG | 0.376508 | 8_4:-45918718 | Msa1328300:CDS |
| TGTTGCTGATACAGTGTTGA+TGG | 0.397885 | 8_4:+45919308 | None:intergenic |
| GAAGATGAAACAGCATGAAT+AGG | 0.408063 | 8_4:+45919414 | None:intergenic |
| TGGTGGAAAGAGTTGGGGTT+GGG | 0.418864 | 8_4:-45918398 | Msa1328300:CDS |
| GAGAGAGTACTTAGAAGATG+TGG | 0.429448 | 8_4:-45918562 | Msa1328300:CDS |
| TGTGGTAGCAGAAGCTTCTC+TGG | 0.436507 | 8_4:-45918745 | Msa1328300:CDS |
| AAACCGTGGTGGAAAGAGTT+GGG | 0.438847 | 8_4:-45918404 | Msa1328300:CDS |
| TTTCTCTTAGCTAAGAGAAA+AGG | 0.439645 | 8_4:+45919177 | None:intergenic |
| TCATGCAATGGTGGTGGTGG+TGG | 0.442897 | 8_4:+45918587 | None:intergenic |
| CCATCTTTGCTTTCTGCTAG+AGG | 0.444298 | 8_4:-45918244 | Msa1328300:CDS |
| TACTGCTTCAGCAAAGCTTA+AGG | 0.447924 | 8_4:-45918914 | Msa1328300:CDS |
| AAGAAGAGGTAGTAACTCTA+TGG | 0.451639 | 8_4:-45919064 | Msa1328300:CDS |
| CCACCAGGGTTGTTTCTGTA+AGG | 0.453511 | 8_4:+45919498 | None:intergenic |
| AGATGAAGAAGGTGCAATAT+CGG | 0.460435 | 8_4:+45919368 | None:intergenic |
| GTTTCAAGATCTAGATCTGT+TGG | 0.462444 | 8_4:-45918769 | Msa1328300:CDS |
| AATGCATTGCATGCCATCAA+TGG | 0.463242 | 8_4:+45919527 | None:intergenic |
| CTTTCATGCAATGGTGGTGG+TGG | 0.470222 | 8_4:+45918584 | None:intergenic |
| TGTTGTTCAGGTTCTTCTCT+AGG | 0.476919 | 8_4:-45918886 | Msa1328300:CDS |
| TTGCTACTAAAAGCTCTCAT+AGG | 0.486290 | 8_4:+45918364 | None:intergenic |
| GGTGAAGATGATTCCATTGA+TGG | 0.500906 | 8_4:-45919540 | Msa1328300:CDS |
| CTCTCTCTTTCATGCAATGG+TGG | 0.507725 | 8_4:+45918578 | None:intergenic |
| TCTGCTGATGATGCTGTGAA+TGG | 0.510492 | 8_4:-45918460 | Msa1328300:CDS |
| CCTCTAGCAGAAAGCAAAGA+TGG | 0.523438 | 8_4:+45918244 | None:intergenic |
| CAACGTGAAGGTAAATCAAA+GGG | 0.524007 | 8_4:-45918661 | Msa1328300:CDS |
| AGAGTACTTAGAAGATGTGG+AGG | 0.530225 | 8_4:-45918559 | Msa1328300:CDS |
| GAAACAGCATGAATAGGAAG+AGG | 0.541992 | 8_4:+45919420 | None:intergenic |
| TCAACGTGAAGGTAAATCAA+AGG | 0.542593 | 8_4:-45918662 | Msa1328300:CDS |
| GTACTCTCTCTTTCATGCAA+TGG | 0.549611 | 8_4:+45918575 | None:intergenic |
| GTAGAAGTGGAAGATGAAGA+AGG | 0.550563 | 8_4:+45919357 | None:intergenic |
| TCTCTTTCATGCAATGGTGG+TGG | 0.551870 | 8_4:+45918581 | None:intergenic |
| AAAACCGTGGTGGAAAGAGT+TGG | 0.552394 | 8_4:-45918405 | Msa1328300:CDS |
| ATGGAAGCTATGAAAGGAGG+TGG | 0.557344 | 8_4:-45919579 | Msa1328300:CDS |
| CAGAAAGCACAGATCCCACC+AGG | 0.559715 | 8_4:+45919483 | None:intergenic |
| GGTGGTGGTGGTCTTGAGCA+CGG | 0.563918 | 8_4:+45918602 | None:intergenic |
| GGAGTAGTTGCTAGTTCTAA+CGG | 0.567503 | 8_4:-45918640 | Msa1328300:CDS |
| AGATCTAGATCTGTTGGATG+TGG | 0.570100 | 8_4:-45918763 | Msa1328300:CDS |
| ACAATGACGAGTAGTAGAAG+TGG | 0.577152 | 8_4:+45919344 | None:intergenic |
| GGTGGAAGAGTTAACATTGG+TGG | 0.580786 | 8_4:-45919561 | Msa1328300:CDS |
| GCAATATCGGATCTGAAAGA+AGG | 0.583095 | 8_4:+45919381 | None:intergenic |
| CTCCACATGGAAGCTATGAA+AGG | 0.591526 | 8_4:-45919585 | None:intergenic |
| GATGATGCTGTGAATGGAGG+AGG | 0.601572 | 8_4:-45918454 | Msa1328300:CDS |
| GTGAATGGAGGAGGAAAACA+AGG | 0.606362 | 8_4:-45918445 | Msa1328300:CDS |
| TCAACTGCAACACCAAGAAG+AGG | 0.609625 | 8_4:-45919078 | Msa1328300:CDS |
| GCTGATGATGCTGTGAATGG+AGG | 0.611420 | 8_4:-45918457 | Msa1328300:CDS |
| GTGGTGGAAAGAGTTGGGGT+TGG | 0.618705 | 8_4:-45918399 | Msa1328300:CDS |
| AGAGTTGAATCTCAACGTGA+AGG | 0.620108 | 8_4:-45918673 | Msa1328300:CDS |
| AGAAACAGATGCTGAAACAG+AGG | 0.622276 | 8_4:+45919143 | None:intergenic |
| AACCGTGGTGGAAAGAGTTG+GGG | 0.625855 | 8_4:-45918403 | Msa1328300:CDS |
| GGAGGTGGAAGAGTTAACAT+TGG | 0.629960 | 8_4:-45919564 | Msa1328300:CDS |
| AACCCCAACTCTTTCCACCA+CGG | 0.631839 | 8_4:+45918401 | None:intergenic |
| AAACAGCATGAATAGGAAGA+GGG | 0.633769 | 8_4:+45919421 | None:intergenic |
| CACATGGAAGCTATGAAAGG+AGG | 0.640939 | 8_4:-45919582 | Msa1328300:CDS |
| AGCAACAACAACAATAACAC+AGG | 0.642138 | 8_4:-45918808 | Msa1328300:CDS |
| CTTACAGAAACAACCCTGGT+GGG | 0.650568 | 8_4:-45919497 | Msa1328300:CDS |
| AGATGTGGAGGAATATTCAG+TGG | 0.663518 | 8_4:-45918547 | Msa1328300:CDS |
| TCTTTGAAAGAATTTCAACT+GGG | 0.667021 | 8_4:-45918717 | Msa1328300:CDS |
| GTGTTGATGGAAGAAGAAGA+AGG | 0.669636 | 8_4:+45919321 | None:intergenic |
| TTCTAGAATAGTATTCATGG+TGG | 0.674918 | 8_4:+45919211 | None:intergenic |
| CCTTACAGAAACAACCCTGG+TGG | 0.681499 | 8_4:-45919498 | Msa1328300:CDS |
| GTAACAGTTTCTCAAAACCG+TGG | 0.681671 | 8_4:-45918418 | Msa1328300:CDS |
| ACAGTTTCTCAAAACCGTGG+TGG | 0.685632 | 8_4:-45918415 | Msa1328300:CDS |
| CATCCTTACAGAAACAACCC+TGG | 0.718016 | 8_4:-45919501 | Msa1328300:CDS |
| AGAAAGCACAGATCCCACCA+GGG | 0.760791 | 8_4:+45919484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTAGAATAGTATTCA+TGG | + | chr8_4:45918614-45918633 | None:intergenic | 20.0% |
| !!! | TTTTTCTAGAATAGTATTCA+TGG | + | chr8_4:45918614-45918633 | None:intergenic | 20.0% |
| !!! | CCATGATTTTCATTTTTTGT+AGG | + | chr8_4:45918579-45918598 | None:intergenic | 25.0% |
| ! | CCTACAAAAAATGAAAATCA+TGG | - | chr8_4:45918576-45918595 | Msa1328300:CDS | 25.0% |
| ! | TTTAGTCCAAGAAAAAGAAA+TGG | - | chr8_4:45918798-45918817 | Msa1328300:CDS | 25.0% |
| ! | TTAGTCCAAGAAAAAGAAAT+GGG | - | chr8_4:45918799-45918818 | Msa1328300:CDS | 25.0% |
| !! | TTCTTTGAAAGAATTTCAAC+TGG | - | chr8_4:45919101-45919120 | Msa1328300:CDS | 25.0% |
| !! | TCTTTGAAAGAATTTCAACT+GGG | - | chr8_4:45919102-45919121 | Msa1328300:CDS | 25.0% |
| ! | ATTCATCAACTTCATCTTAT+TGG | - | chr8_4:45919324-45919343 | Msa1328300:CDS | 25.0% |
| ! | TTCATCAACTTCATCTTATT+GGG | - | chr8_4:45919325-45919344 | Msa1328300:CDS | 25.0% |
| !!! | CCATGATTTTCATTTTTTGT+AGG | + | chr8_4:45918579-45918598 | None:intergenic | 25.0% |
| ! | CCTACAAAAAATGAAAATCA+TGG | - | chr8_4:45918576-45918595 | Msa1328300:CDS | 25.0% |
| ! | TTTAGTCCAAGAAAAAGAAA+TGG | - | chr8_4:45918798-45918817 | Msa1328300:CDS | 25.0% |
| ! | TTAGTCCAAGAAAAAGAAAT+GGG | - | chr8_4:45918799-45918818 | Msa1328300:CDS | 25.0% |
| !! | TTCTTTGAAAGAATTTCAAC+TGG | - | chr8_4:45919101-45919120 | Msa1328300:CDS | 25.0% |
| !! | TCTTTGAAAGAATTTCAACT+GGG | - | chr8_4:45919102-45919121 | Msa1328300:CDS | 25.0% |
| ! | ATTCATCAACTTCATCTTAT+TGG | - | chr8_4:45919324-45919343 | Msa1328300:CDS | 25.0% |
| ! | TTCATCAACTTCATCTTATT+GGG | - | chr8_4:45919325-45919344 | Msa1328300:CDS | 25.0% |
| TTCTGTCTTCAAGAAAAACT+TGG | - | chr8_4:45918354-45918373 | Msa1328300:CDS | 30.0% | |
| !! | TTCTAGAATAGTATTCATGG+TGG | + | chr8_4:45918611-45918630 | None:intergenic | 30.0% |
| TTTCTCTTAGCTAAGAGAAA+AGG | + | chr8_4:45918645-45918664 | None:intergenic | 30.0% | |
| ! | CAAAACCCATTTCTTTTTCT+TGG | + | chr8_4:45918807-45918826 | None:intergenic | 30.0% |
| !! | CAAGAAAAAGAAATGGGTTT+TGG | - | chr8_4:45918805-45918824 | Msa1328300:CDS | 30.0% |
| TTCTGTCTTCAAGAAAAACT+TGG | - | chr8_4:45918354-45918373 | Msa1328300:CDS | 30.0% | |
| !! | TTCTAGAATAGTATTCATGG+TGG | + | chr8_4:45918611-45918630 | None:intergenic | 30.0% |
| TTTCTCTTAGCTAAGAGAAA+AGG | + | chr8_4:45918645-45918664 | None:intergenic | 30.0% | |
| ! | CAAAACCCATTTCTTTTTCT+TGG | + | chr8_4:45918807-45918826 | None:intergenic | 30.0% |
| !! | CAAGAAAAAGAAATGGGTTT+TGG | - | chr8_4:45918805-45918824 | Msa1328300:CDS | 30.0% |
| AAACAGCATGAATAGGAAGA+GGG | + | chr8_4:45918401-45918420 | None:intergenic | 35.0% | |
| GAAGATGAAACAGCATGAAT+AGG | + | chr8_4:45918408-45918427 | None:intergenic | 35.0% | |
| ! | AGATGAAGAAGGTGCAATAT+CGG | + | chr8_4:45918454-45918473 | None:intergenic | 35.0% |
| ATAGAGTTACTACCTCTTCT+TGG | + | chr8_4:45918756-45918775 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTAACTCTA+TGG | - | chr8_4:45918755-45918774 | Msa1328300:CDS | 35.0% | |
| GCTCTTAGAATTCAAACTCT+TGG | + | chr8_4:45918874-45918893 | None:intergenic | 35.0% | |
| !! | CTTAAGGAAAAGTGTTGTTC+AGG | - | chr8_4:45918921-45918940 | Msa1328300:CDS | 35.0% |
| AGCAACAACAACAATAACAC+AGG | - | chr8_4:45919011-45919030 | Msa1328300:CDS | 35.0% | |
| GTTTCAAGATCTAGATCTGT+TGG | - | chr8_4:45919050-45919069 | Msa1328300:CDS | 35.0% | |
| GAAAGAATTTCAACTGGGTT+TGG | - | chr8_4:45919107-45919126 | Msa1328300:CDS | 35.0% | |
| TCAACGTGAAGGTAAATCAA+AGG | - | chr8_4:45919157-45919176 | Msa1328300:CDS | 35.0% | |
| CAACGTGAAGGTAAATCAAA+GGG | - | chr8_4:45919158-45919177 | Msa1328300:CDS | 35.0% | |
| TTGCTACTAAAAGCTCTCAT+AGG | + | chr8_4:45919458-45919477 | None:intergenic | 35.0% | |
| ! | ATGAGAGCTTTTAGTAGCAA+AGG | - | chr8_4:45919458-45919477 | Msa1328300:CDS | 35.0% |
| GATGGCATAGCAGATAAATT+TGG | + | chr8_4:45919560-45919579 | None:intergenic | 35.0% | |
| AAACAGCATGAATAGGAAGA+GGG | + | chr8_4:45918401-45918420 | None:intergenic | 35.0% | |
| GAAGATGAAACAGCATGAAT+AGG | + | chr8_4:45918408-45918427 | None:intergenic | 35.0% | |
| ! | AGATGAAGAAGGTGCAATAT+CGG | + | chr8_4:45918454-45918473 | None:intergenic | 35.0% |
| ATAGAGTTACTACCTCTTCT+TGG | + | chr8_4:45918756-45918775 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTAACTCTA+TGG | - | chr8_4:45918755-45918774 | Msa1328300:CDS | 35.0% | |
| GCTCTTAGAATTCAAACTCT+TGG | + | chr8_4:45918874-45918893 | None:intergenic | 35.0% | |
| !! | CTTAAGGAAAAGTGTTGTTC+AGG | - | chr8_4:45918921-45918940 | Msa1328300:CDS | 35.0% |
| AGCAACAACAACAATAACAC+AGG | - | chr8_4:45919011-45919030 | Msa1328300:CDS | 35.0% | |
| GTTTCAAGATCTAGATCTGT+TGG | - | chr8_4:45919050-45919069 | Msa1328300:CDS | 35.0% | |
| GAAAGAATTTCAACTGGGTT+TGG | - | chr8_4:45919107-45919126 | Msa1328300:CDS | 35.0% | |
| TCAACGTGAAGGTAAATCAA+AGG | - | chr8_4:45919157-45919176 | Msa1328300:CDS | 35.0% | |
| CAACGTGAAGGTAAATCAAA+GGG | - | chr8_4:45919158-45919177 | Msa1328300:CDS | 35.0% | |
| TTGCTACTAAAAGCTCTCAT+AGG | + | chr8_4:45919458-45919477 | None:intergenic | 35.0% | |
| ! | ATGAGAGCTTTTAGTAGCAA+AGG | - | chr8_4:45919458-45919477 | Msa1328300:CDS | 35.0% |
| GATGGCATAGCAGATAAATT+TGG | + | chr8_4:45919560-45919579 | None:intergenic | 35.0% | |
| GGTGAAGATGATTCCATTGA+TGG | - | chr8_4:45918279-45918298 | Msa1328300:CDS | 40.0% | |
| AATGCATTGCATGCCATCAA+TGG | + | chr8_4:45918295-45918314 | None:intergenic | 40.0% | |
| GAAACAGCATGAATAGGAAG+AGG | + | chr8_4:45918402-45918421 | None:intergenic | 40.0% | |
| GCAATATCGGATCTGAAAGA+AGG | + | chr8_4:45918441-45918460 | None:intergenic | 40.0% | |
| GTAGAAGTGGAAGATGAAGA+AGG | + | chr8_4:45918465-45918484 | None:intergenic | 40.0% | |
| ACAATGACGAGTAGTAGAAG+TGG | + | chr8_4:45918478-45918497 | None:intergenic | 40.0% | |
| ! | GTGTTGATGGAAGAAGAAGA+AGG | + | chr8_4:45918501-45918520 | None:intergenic | 40.0% |
| ! | TGTTGCTGATACAGTGTTGA+TGG | + | chr8_4:45918514-45918533 | None:intergenic | 40.0% |
| AGAAACAGATGCTGAAACAG+AGG | + | chr8_4:45918679-45918698 | None:intergenic | 40.0% | |
| TCTGTTTCAGCATCTGTTTC+TGG | - | chr8_4:45918678-45918697 | Msa1328300:CDS | 40.0% | |
| TACTGCTTCAGCAAAGCTTA+AGG | - | chr8_4:45918905-45918924 | Msa1328300:CDS | 40.0% | |
| ! | TGTTGTTCAGGTTCTTCTCT+AGG | - | chr8_4:45918933-45918952 | Msa1328300:CDS | 40.0% |
| ! | TTGTTGTTGCTGCTGCTATT+AGG | + | chr8_4:45919002-45919021 | None:intergenic | 40.0% |
| AGATCTAGATCTGTTGGATG+TGG | - | chr8_4:45919056-45919075 | Msa1328300:CDS | 40.0% | |
| AGAGTTGAATCTCAACGTGA+AGG | - | chr8_4:45919146-45919165 | Msa1328300:CDS | 40.0% | |
| !! | GGAGTAGTTGCTAGTTCTAA+CGG | - | chr8_4:45919179-45919198 | Msa1328300:CDS | 40.0% |
| GTACTCTCTCTTTCATGCAA+TGG | + | chr8_4:45919247-45919266 | None:intergenic | 40.0% | |
| !! | GAGAGAGTACTTAGAAGATG+TGG | - | chr8_4:45919257-45919276 | Msa1328300:CDS | 40.0% |
| ! | AGAGTACTTAGAAGATGTGG+AGG | - | chr8_4:45919260-45919279 | Msa1328300:CDS | 40.0% |
| AGATGTGGAGGAATATTCAG+TGG | - | chr8_4:45919272-45919291 | Msa1328300:CDS | 40.0% | |
| GTAACAGTTTCTCAAAACCG+TGG | - | chr8_4:45919401-45919420 | Msa1328300:CDS | 40.0% | |
| GGTGAAGATGATTCCATTGA+TGG | - | chr8_4:45918279-45918298 | Msa1328300:CDS | 40.0% | |
| AATGCATTGCATGCCATCAA+TGG | + | chr8_4:45918295-45918314 | None:intergenic | 40.0% | |
| GAAACAGCATGAATAGGAAG+AGG | + | chr8_4:45918402-45918421 | None:intergenic | 40.0% | |
| GCAATATCGGATCTGAAAGA+AGG | + | chr8_4:45918441-45918460 | None:intergenic | 40.0% | |
| GTAGAAGTGGAAGATGAAGA+AGG | + | chr8_4:45918465-45918484 | None:intergenic | 40.0% | |
| ACAATGACGAGTAGTAGAAG+TGG | + | chr8_4:45918478-45918497 | None:intergenic | 40.0% | |
| ! | GTGTTGATGGAAGAAGAAGA+AGG | + | chr8_4:45918501-45918520 | None:intergenic | 40.0% |
| ! | TGTTGCTGATACAGTGTTGA+TGG | + | chr8_4:45918514-45918533 | None:intergenic | 40.0% |
| AGAAACAGATGCTGAAACAG+AGG | + | chr8_4:45918679-45918698 | None:intergenic | 40.0% | |
| TCTGTTTCAGCATCTGTTTC+TGG | - | chr8_4:45918678-45918697 | Msa1328300:CDS | 40.0% | |
| TACTGCTTCAGCAAAGCTTA+AGG | - | chr8_4:45918905-45918924 | Msa1328300:CDS | 40.0% | |
| ! | TGTTGTTCAGGTTCTTCTCT+AGG | - | chr8_4:45918933-45918952 | Msa1328300:CDS | 40.0% |
| ! | TTGTTGTTGCTGCTGCTATT+AGG | + | chr8_4:45919002-45919021 | None:intergenic | 40.0% |
| AGATCTAGATCTGTTGGATG+TGG | - | chr8_4:45919056-45919075 | Msa1328300:CDS | 40.0% | |
| AGAGTTGAATCTCAACGTGA+AGG | - | chr8_4:45919146-45919165 | Msa1328300:CDS | 40.0% | |
| !! | GGAGTAGTTGCTAGTTCTAA+CGG | - | chr8_4:45919179-45919198 | Msa1328300:CDS | 40.0% |
| GTACTCTCTCTTTCATGCAA+TGG | + | chr8_4:45919247-45919266 | None:intergenic | 40.0% | |
| !! | GAGAGAGTACTTAGAAGATG+TGG | - | chr8_4:45919257-45919276 | Msa1328300:CDS | 40.0% |
| ! | AGAGTACTTAGAAGATGTGG+AGG | - | chr8_4:45919260-45919279 | Msa1328300:CDS | 40.0% |
| AGATGTGGAGGAATATTCAG+TGG | - | chr8_4:45919272-45919291 | Msa1328300:CDS | 40.0% | |
| GTAACAGTTTCTCAAAACCG+TGG | - | chr8_4:45919401-45919420 | Msa1328300:CDS | 40.0% | |
| ATGGAAGCTATGAAAGGAGG+TGG | - | chr8_4:45918240-45918259 | Msa1328300:CDS | 45.0% | |
| GGAGGTGGAAGAGTTAACAT+TGG | - | chr8_4:45918255-45918274 | Msa1328300:CDS | 45.0% | |
| GGTGGAAGAGTTAACATTGG+TGG | - | chr8_4:45918258-45918277 | Msa1328300:CDS | 45.0% | |
| CATCCTTACAGAAACAACCC+TGG | - | chr8_4:45918318-45918337 | Msa1328300:CDS | 45.0% | |
| CTTACAGAAACAACCCTGGT+GGG | - | chr8_4:45918322-45918341 | Msa1328300:CDS | 45.0% | |
| TCAACTGCAACACCAAGAAG+AGG | - | chr8_4:45918741-45918760 | Msa1328300:CDS | 45.0% | |
| TCTCTTTCATGCAATGGTGG+TGG | + | chr8_4:45919241-45919260 | None:intergenic | 45.0% | |
| CTCTCTCTTTCATGCAATGG+TGG | + | chr8_4:45919244-45919263 | None:intergenic | 45.0% | |
| ! | TCTGCTGATGATGCTGTGAA+TGG | - | chr8_4:45919359-45919378 | Msa1328300:CDS | 45.0% |
| GTGAATGGAGGAGGAAAACA+AGG | - | chr8_4:45919374-45919393 | Msa1328300:CDS | 45.0% | |
| ACAGTTTCTCAAAACCGTGG+TGG | - | chr8_4:45919404-45919423 | Msa1328300:CDS | 45.0% | |
| ! | AAAACCGTGGTGGAAAGAGT+TGG | - | chr8_4:45919414-45919433 | Msa1328300:CDS | 45.0% |
| ! | AAACCGTGGTGGAAAGAGTT+GGG | - | chr8_4:45919415-45919434 | Msa1328300:CDS | 45.0% |
| CCTCTAGCAGAAAGCAAAGA+TGG | + | chr8_4:45919578-45919597 | None:intergenic | 45.0% | |
| CCATCTTTGCTTTCTGCTAG+AGG | - | chr8_4:45919575-45919594 | Msa1328300:CDS | 45.0% | |
| ATGGAAGCTATGAAAGGAGG+TGG | - | chr8_4:45918240-45918259 | Msa1328300:CDS | 45.0% | |
| GGAGGTGGAAGAGTTAACAT+TGG | - | chr8_4:45918255-45918274 | Msa1328300:CDS | 45.0% | |
| GGTGGAAGAGTTAACATTGG+TGG | - | chr8_4:45918258-45918277 | Msa1328300:CDS | 45.0% | |
| CATCCTTACAGAAACAACCC+TGG | - | chr8_4:45918318-45918337 | Msa1328300:CDS | 45.0% | |
| CTTACAGAAACAACCCTGGT+GGG | - | chr8_4:45918322-45918341 | Msa1328300:CDS | 45.0% | |
| TCAACTGCAACACCAAGAAG+AGG | - | chr8_4:45918741-45918760 | Msa1328300:CDS | 45.0% | |
| TCTCTTTCATGCAATGGTGG+TGG | + | chr8_4:45919241-45919260 | None:intergenic | 45.0% | |
| CTCTCTCTTTCATGCAATGG+TGG | + | chr8_4:45919244-45919263 | None:intergenic | 45.0% | |
| ! | TCTGCTGATGATGCTGTGAA+TGG | - | chr8_4:45919359-45919378 | Msa1328300:CDS | 45.0% |
| GTGAATGGAGGAGGAAAACA+AGG | - | chr8_4:45919374-45919393 | Msa1328300:CDS | 45.0% | |
| ACAGTTTCTCAAAACCGTGG+TGG | - | chr8_4:45919404-45919423 | Msa1328300:CDS | 45.0% | |
| ! | AAAACCGTGGTGGAAAGAGT+TGG | - | chr8_4:45919414-45919433 | Msa1328300:CDS | 45.0% |
| ! | AAACCGTGGTGGAAAGAGTT+GGG | - | chr8_4:45919415-45919434 | Msa1328300:CDS | 45.0% |
| CCTCTAGCAGAAAGCAAAGA+TGG | + | chr8_4:45919578-45919597 | None:intergenic | 45.0% | |
| CCATCTTTGCTTTCTGCTAG+AGG | - | chr8_4:45919575-45919594 | Msa1328300:CDS | 45.0% | |
| !! | CCACCAGGGTTGTTTCTGTA+AGG | + | chr8_4:45918324-45918343 | None:intergenic | 50.0% |
| CCTTACAGAAACAACCCTGG+TGG | - | chr8_4:45918321-45918340 | Msa1328300:CDS | 50.0% | |
| ! | AGAAAGCACAGATCCCACCA+GGG | + | chr8_4:45918338-45918357 | None:intergenic | 50.0% |
| TGTGGTAGCAGAAGCTTCTC+TGG | - | chr8_4:45919074-45919093 | Msa1328300:CDS | 50.0% | |
| !! | CTTTCATGCAATGGTGGTGG+TGG | + | chr8_4:45919238-45919257 | None:intergenic | 50.0% |
| ! | GCTGATGATGCTGTGAATGG+AGG | - | chr8_4:45919362-45919381 | Msa1328300:CDS | 50.0% |
| GATGATGCTGTGAATGGAGG+AGG | - | chr8_4:45919365-45919384 | Msa1328300:CDS | 50.0% | |
| ! | AACCGTGGTGGAAAGAGTTG+GGG | - | chr8_4:45919416-45919435 | Msa1328300:CDS | 50.0% |
| AACCCCAACTCTTTCCACCA+CGG | + | chr8_4:45919421-45919440 | None:intergenic | 50.0% | |
| TGGTGGAAAGAGTTGGGGTT+GGG | - | chr8_4:45919421-45919440 | Msa1328300:CDS | 50.0% | |
| !! | CCACCAGGGTTGTTTCTGTA+AGG | + | chr8_4:45918324-45918343 | None:intergenic | 50.0% |
| CCTTACAGAAACAACCCTGG+TGG | - | chr8_4:45918321-45918340 | Msa1328300:CDS | 50.0% | |
| ! | AGAAAGCACAGATCCCACCA+GGG | + | chr8_4:45918338-45918357 | None:intergenic | 50.0% |
| TGTGGTAGCAGAAGCTTCTC+TGG | - | chr8_4:45919074-45919093 | Msa1328300:CDS | 50.0% | |
| !! | CTTTCATGCAATGGTGGTGG+TGG | + | chr8_4:45919238-45919257 | None:intergenic | 50.0% |
| ! | GCTGATGATGCTGTGAATGG+AGG | - | chr8_4:45919362-45919381 | Msa1328300:CDS | 50.0% |
| GATGATGCTGTGAATGGAGG+AGG | - | chr8_4:45919365-45919384 | Msa1328300:CDS | 50.0% | |
| ! | AACCGTGGTGGAAAGAGTTG+GGG | - | chr8_4:45919416-45919435 | Msa1328300:CDS | 50.0% |
| AACCCCAACTCTTTCCACCA+CGG | + | chr8_4:45919421-45919440 | None:intergenic | 50.0% | |
| TGGTGGAAAGAGTTGGGGTT+GGG | - | chr8_4:45919421-45919440 | Msa1328300:CDS | 50.0% | |
| ! | CAGAAAGCACAGATCCCACC+AGG | + | chr8_4:45918339-45918358 | None:intergenic | 55.0% |
| !! | TCATGCAATGGTGGTGGTGG+TGG | + | chr8_4:45919235-45919254 | None:intergenic | 55.0% |
| ! | GTGGTGGAAAGAGTTGGGGT+TGG | - | chr8_4:45919420-45919439 | Msa1328300:CDS | 55.0% |
| ! | CAGAAAGCACAGATCCCACC+AGG | + | chr8_4:45918339-45918358 | None:intergenic | 55.0% |
| !! | TCATGCAATGGTGGTGGTGG+TGG | + | chr8_4:45919235-45919254 | None:intergenic | 55.0% |
| ! | GTGGTGGAAAGAGTTGGGGT+TGG | - | chr8_4:45919420-45919439 | Msa1328300:CDS | 55.0% |
| !! | GGTGGTGGTGGTCTTGAGCA+CGG | + | chr8_4:45919220-45919239 | None:intergenic | 60.0% |
| !! | TGCAATGGTGGTGGTGGTGG+TGG | + | chr8_4:45919232-45919251 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTCTTGAGCA+CGG | + | chr8_4:45919220-45919239 | None:intergenic | 60.0% |
| !! | TGCAATGGTGGTGGTGGTGG+TGG | + | chr8_4:45919232-45919251 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 45918240 | 45919601 | 45918240 | ID=Msa1328300;Name=Msa1328300 |
| chr8_4 | mRNA | 45918240 | 45919601 | 45918240 | ID=Msa1328300-mRNA-1;Parent=Msa1328300;Name=Msa1328300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|453 |
| chr8_4 | exon | 45918240 | 45919601 | 45918240 | ID=Msa1328300-mRNA-1:exon:12960;Parent=Msa1328300-mRNA-1 |
| chr8_4 | CDS | 45918240 | 45919601 | 45918240 | ID=Msa1328300-mRNA-1:cds;Parent=Msa1328300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
