Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481140 | AES91885.1 | 91.723 | 447 | 16 | 7 | 1 | 439 | 1 | 434 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481140 | G7JLJ0 | 91.723 | 447 | 16 | 7 | 1 | 439 | 1 | 434 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032180 | Msa0481140 | 0.835865 | 1.308656e-56 | -8.615850e-47 |
| Msa0032460 | Msa0481140 | 0.833579 | 4.918887e-56 | -8.615850e-47 |
| Msa0140280 | Msa0481140 | 0.820375 | 7.090448e-53 | -8.615850e-47 |
| Msa0173290 | Msa0481140 | 0.810987 | 8.770572e-51 | -8.615850e-47 |
| Msa0185960 | Msa0481140 | 0.800178 | 1.627662e-48 | -8.615850e-47 |
| Msa0213610 | Msa0481140 | 0.811873 | 5.630042e-51 | -8.615850e-47 |
| Msa0380670 | Msa0481140 | 0.814133 | 1.799074e-51 | -8.615850e-47 |
| Msa0389950 | Msa0481140 | 0.801487 | 8.797899e-49 | -8.615850e-47 |
| Msa0430300 | Msa0481140 | 0.808146 | 3.573532e-50 | -8.615850e-47 |
| Msa0481140 | Msa0483910 | 0.855256 | 7.128863e-62 | -8.615850e-47 |
| Msa0481140 | Msa0484570 | 0.805455 | 1.324191e-49 | -8.615850e-47 |
| Msa0481140 | Msa0571620 | 0.800468 | 1.421206e-48 | -8.615850e-47 |
| Msa0481140 | Msa0573760 | 0.803716 | 3.052123e-49 | -8.615850e-47 |
| Msa0481140 | Msa0585340 | 0.800299 | 1.538499e-48 | -8.615850e-47 |
| Msa0481140 | Msa0606100 | 0.806267 | 8.935924e-50 | -8.615850e-47 |
| Msa0481140 | Msa0615630 | 0.809776 | 1.601198e-50 | -8.615850e-47 |
| Msa0481140 | Msa0698730 | 0.822576 | 2.199661e-53 | -8.615850e-47 |
| Msa0481140 | Msa0703600 | 0.802642 | 5.093263e-49 | -8.615850e-47 |
| Msa0481140 | Msa0709200 | 0.800927 | 1.145216e-48 | -8.615850e-47 |
| Msa0481140 | Msa0773630 | 0.800317 | 1.525451e-48 | -8.615850e-47 |
| Msa0481140 | Msa0780910 | 0.800392 | 1.472523e-48 | -8.615850e-47 |
| Msa0481140 | Msa0798080 | 0.821364 | 4.200153e-53 | -8.615850e-47 |
| Msa0481140 | Msa0909760 | 0.812517 | 4.073987e-51 | -8.615850e-47 |
| Msa0481140 | Msa1000970 | 0.801433 | 9.026629e-49 | -8.615850e-47 |
| Msa0481140 | Msa1003740 | 0.853022 | 3.144147e-61 | -8.615850e-47 |
| Msa0481140 | Msa1003800 | 0.855988 | 4.359940e-62 | -8.615850e-47 |
| Msa0481140 | Msa1003930 | 0.860132 | 2.555356e-63 | -8.615850e-47 |
| Msa0481140 | Msa1033920 | 0.810343 | 1.208404e-50 | -8.615850e-47 |
| Msa0481140 | Msa1077990 | 0.817255 | 3.625057e-52 | -8.615850e-47 |
| Msa0481140 | Msa1078880 | 0.818440 | 1.958087e-52 | -8.615850e-47 |
| Msa0481140 | Msa1078970 | 0.810337 | 1.211966e-50 | -8.615850e-47 |
| Msa0481140 | Msa1083080 | 0.807988 | 3.862289e-50 | -8.615850e-47 |
| Msa0481140 | Msa1125820 | 0.800036 | 1.739770e-48 | -8.615850e-47 |
| Msa0481140 | Msa1125990 | 0.800505 | 1.396402e-48 | -8.615850e-47 |
| Msa0481140 | Msa1127960 | 0.808397 | 3.160364e-50 | -8.615850e-47 |
| Msa0481140 | Msa1132530 | 0.813945 | 1.979976e-51 | -8.615850e-47 |
| Msa0481140 | Msa1167470 | 0.803357 | 3.624011e-49 | -8.615850e-47 |
| Msa0481140 | Msa1169190 | 0.819492 | 1.128891e-52 | -8.615850e-47 |
| Msa0481140 | Msa1216090 | 0.822619 | 2.149661e-53 | -8.615850e-47 |
| Msa0481140 | Msa1217910 | 0.985366 | 2.408627e-163 | -8.615850e-47 |
| Msa0481140 | Msa1226520 | 0.802437 | 5.613700e-49 | -8.615850e-47 |
| Msa0481140 | Msa1328300 | 0.859602 | 3.692063e-63 | -8.615850e-47 |
| Msa0481140 | Msa1447170 | 0.807563 | 4.754539e-50 | -8.615850e-47 |
| Msa0293040 | Msa0481140 | 0.810015 | 1.422326e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481140 | MtrunA17_Chr4g0067481 | 91.723 | 447 | 16 | 7 | 1 | 439 | 7 | 440 | 0.0 | 599 |
| Msa0481140 | MtrunA17_Chr2g0295691 | 47.597 | 437 | 120 | 20 | 1 | 407 | 1 | 358 | 3.58e-79 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481140 | AT3G06868.1 | 41.363 | 411 | 148 | 12 | 10 | 406 | 2 | 333 | 1.02e-64 | 213 |
| Msa0481140 | AT5G49100.1 | 77.273 | 44 | 10 | 0 | 15 | 58 | 6 | 49 | 6.69e-18 | 85.9 |
Find 75 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCAGCATCTGTTTC+TGG | 0.093012 | 3_3:+86913111 | Msa0481140:CDS |
| ATTCATCAACTTCATCTTAT+TGG | 0.130948 | 3_3:+86913748 | Msa0481140:CDS |
| GATGGCATAGCAGATAAATT+TGG | 0.265269 | 3_3:-86913982 | None:intergenic |
| TTCATCAACTTCATCTTATT+GGG | 0.273852 | 3_3:+86913749 | Msa0481140:CDS |
| GTGTTGTTGCTGCTGCTATT+AGG | 0.305216 | 3_3:-86913432 | None:intergenic |
| GAAAGAATTTCAACTGGGTT+TGG | 0.321464 | 3_3:+86913531 | Msa0481140:CDS |
| ATAGAGTTACTACCTCTTCT+TGG | 0.326180 | 3_3:-86913186 | None:intergenic |
| CTTAAGGAAAAGTGTTGTTC+AGG | 0.342745 | 3_3:+86913354 | Msa0481140:CDS |
| TTCTTTGAAAGAATTTCAAC+TGG | 0.376508 | 3_3:+86913525 | Msa0481140:CDS |
| TGTTGCTGATACAGTGTTGA+TGG | 0.397885 | 3_3:-86912944 | None:intergenic |
| AGTAGCATTATTAAAGCTCT+TGG | 0.412538 | 3_3:-86913319 | None:intergenic |
| ATGGCATAGCAGATAAATTT+GGG | 0.414950 | 3_3:-86913981 | None:intergenic |
| GAAGATGAAACGGCATGAAT+AGG | 0.417575 | 3_3:-86912838 | None:intergenic |
| TGGTGGAAAGAGTTGGGGTT+GGG | 0.418864 | 3_3:+86913845 | Msa0481140:CDS |
| GCTCTTGGAATTCAAACTCT+TGG | 0.420196 | 3_3:-86913304 | None:intergenic |
| GAGAGAGTACTTAGAAGATG+TGG | 0.429448 | 3_3:+86913681 | Msa0481140:CDS |
| TGTGGTAGCAGAAGCTTCTC+TGG | 0.436507 | 3_3:+86913498 | Msa0481140:CDS |
| AAACCGTGGTGGAAAGAGTT+GGG | 0.438847 | 3_3:+86913839 | Msa0481140:CDS |
| TTTCTCTTAGCTAAGAGAAA+AGG | 0.439645 | 3_3:-86913075 | None:intergenic |
| TCATGCAATGGTGGTGGTGG+TGG | 0.442897 | 3_3:-86913656 | None:intergenic |
| CCATCTTTGCTTTCTGCTAG+AGG | 0.444298 | 3_3:+86914000 | Msa0481140:CDS |
| TACTGCTTCAGCAAAGCTTA+AGG | 0.447924 | 3_3:+86913338 | Msa0481140:CDS |
| AAGAAGAGGTAGTAACTCTA+TGG | 0.451639 | 3_3:+86913188 | Msa0481140:CDS |
| CCACCAGGGTTGTTTCTGTA+AGG | 0.453511 | 3_3:-86912754 | None:intergenic |
| AGATGAAGAAGGTGCAATAT+CGG | 0.460435 | 3_3:-86912884 | None:intergenic |
| GTTTCAAGATCTAGATCTGT+TGG | 0.462444 | 3_3:+86913474 | Msa0481140:CDS |
| AATGCATTGCATGCCATCAA+TGG | 0.463242 | 3_3:-86912725 | None:intergenic |
| CTTTCATGCAATGGTGGTGG+TGG | 0.470222 | 3_3:-86913659 | None:intergenic |
| TGTTGTTCAGGTTCTTCTCT+AGG | 0.476919 | 3_3:+86913366 | Msa0481140:CDS |
| TTGCTACTAAAAGCTCTCAT+AGG | 0.486290 | 3_3:-86913879 | None:intergenic |
| GGTGAAGATGATTCCATTGA+TGG | 0.500906 | 3_3:+86912712 | Msa0481140:CDS |
| CTCTCTCTTTCATGCAATGG+TGG | 0.507725 | 3_3:-86913665 | None:intergenic |
| TCTGCTGATGATGCTGTGAA+TGG | 0.510492 | 3_3:+86913783 | Msa0481140:CDS |
| TGAAGAAGAAGAAGATGAAA+CGG | 0.520106 | 3_3:-86912848 | None:intergenic |
| CCTCTAGCAGAAAGCAAAGA+TGG | 0.523438 | 3_3:-86914000 | None:intergenic |
| CAACGTGAAGGTAAATCAAA+GGG | 0.524007 | 3_3:+86913582 | Msa0481140:CDS |
| AGAGTACTTAGAAGATGTGG+AGG | 0.530225 | 3_3:+86913684 | Msa0481140:CDS |
| TCAACGTGAAGGTAAATCAA+AGG | 0.542593 | 3_3:+86913581 | Msa0481140:CDS |
| AGGAGGACAATGACGAGTAG+TGG | 0.546244 | 3_3:-86912914 | None:intergenic |
| ACAATGACGAGTAGTGGAAG+TGG | 0.547008 | 3_3:-86912908 | None:intergenic |
| GTACTCTCTCTTTCATGCAA+TGG | 0.549611 | 3_3:-86913668 | None:intergenic |
| TCTCTTTCATGCAATGGTGG+TGG | 0.551870 | 3_3:-86913662 | None:intergenic |
| AAAACCGTGGTGGAAAGAGT+TGG | 0.552394 | 3_3:+86913838 | Msa0481140:CDS |
| GTGGAAGTGGAAGATGAAGA+AGG | 0.557173 | 3_3:-86912895 | None:intergenic |
| ATGGAAGCTATGAAAGGAGG+TGG | 0.557344 | 3_3:+86912673 | Msa0481140:CDS |
| GGTGGTGGTGGTCTTGAGCA+CGG | 0.563918 | 3_3:-86913641 | None:intergenic |
| GGAGTAGTTGCTAGTTCTAA+CGG | 0.567503 | 3_3:+86913603 | Msa0481140:CDS |
| AGATCTAGATCTGTTGGATG+TGG | 0.570100 | 3_3:+86913480 | Msa0481140:CDS |
| GAAACGGCATGAATAGGAAG+AGG | 0.578837 | 3_3:-86912832 | None:intergenic |
| GGTGGAAGAGTTAACATTGG+TGG | 0.580786 | 3_3:+86912691 | Msa0481140:CDS |
| ACAGTGTTGATGGAAGAAGA+AGG | 0.581749 | 3_3:-86912934 | None:intergenic |
| GCAATATCGGATCTGAAAGA+AGG | 0.583095 | 3_3:-86912871 | None:intergenic |
| CTCCACATGGAAGCTATGAA+AGG | 0.591526 | 3_3:+86912667 | None:intergenic |
| GATGATGCTGTGAATGGAGG+AGG | 0.601572 | 3_3:+86913789 | Msa0481140:CDS |
| GTGAATGGAGGAGGAAAACA+AGG | 0.606362 | 3_3:+86913798 | Msa0481140:CDS |
| TCAACTGCAACACCAAGAAG+AGG | 0.609625 | 3_3:+86913174 | Msa0481140:CDS |
| GCTGATGATGCTGTGAATGG+AGG | 0.611420 | 3_3:+86913786 | Msa0481140:CDS |
| GTGGTGGAAAGAGTTGGGGT+TGG | 0.618705 | 3_3:+86913844 | Msa0481140:CDS |
| AGAGTTGAATCTCAACGTGA+AGG | 0.620108 | 3_3:+86913570 | Msa0481140:CDS |
| AGAAACAGATGCTGAAACAG+AGG | 0.622276 | 3_3:-86913109 | None:intergenic |
| AACCGTGGTGGAAAGAGTTG+GGG | 0.625855 | 3_3:+86913840 | Msa0481140:CDS |
| GGAGGTGGAAGAGTTAACAT+TGG | 0.629960 | 3_3:+86912688 | Msa0481140:CDS |
| AACCCCAACTCTTTCCACCA+CGG | 0.631839 | 3_3:-86913842 | None:intergenic |
| CACATGGAAGCTATGAAAGG+AGG | 0.640939 | 3_3:+86912670 | None:intergenic |
| CTTACAGAAACAACCCTGGT+GGG | 0.650568 | 3_3:+86912755 | Msa0481140:CDS |
| AGATGTGGAGGAATATTCAG+TGG | 0.663518 | 3_3:+86913696 | Msa0481140:CDS |
| TCTTTGAAAGAATTTCAACT+GGG | 0.667021 | 3_3:+86913526 | Msa0481140:CDS |
| TTCTAGAATAGTATTCATGG+TGG | 0.674918 | 3_3:-86913041 | None:intergenic |
| AAACGGCATGAATAGGAAGA+GGG | 0.675809 | 3_3:-86912831 | None:intergenic |
| CCTTACAGAAACAACCCTGG+TGG | 0.681499 | 3_3:+86912754 | Msa0481140:CDS |
| GTAACAGTTTCTCAAAACCG+TGG | 0.681671 | 3_3:+86913825 | Msa0481140:CDS |
| AATAGCAGCAGCAACAACAC+AGG | 0.684937 | 3_3:+86913435 | Msa0481140:CDS |
| ACAGTTTCTCAAAACCGTGG+TGG | 0.685632 | 3_3:+86913828 | Msa0481140:CDS |
| CATCCTTACAGAAACAACCC+TGG | 0.718016 | 3_3:+86912751 | Msa0481140:CDS |
| GTGTTGATGGAAGAAGAAGG+AGG | 0.756349 | 3_3:-86912931 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTAGAATAGTATTCA+TGG | - | chr3_3:86913047-86913066 | None:intergenic | 20.0% |
| !!! | TTTTTCTAGAATAGTATTCA+TGG | - | chr3_3:86913047-86913066 | None:intergenic | 20.0% |
| !! | TTTTGTCTTCAAGAAAAACT+TGG | + | chr3_3:86912787-86912806 | Msa0481140:CDS | 25.0% |
| !!! | CCATGATTTTCATTTTTTGT+AGG | - | chr3_3:86913012-86913031 | None:intergenic | 25.0% |
| ! | CCTACAAAAAATGAAAATCA+TGG | + | chr3_3:86913009-86913028 | Msa0481140:CDS | 25.0% |
| ! | TTTAGTCCAAGAAAAAGAAA+TGG | + | chr3_3:86913231-86913250 | Msa0481140:CDS | 25.0% |
| ! | TTAGTCCAAGAAAAAGAAAT+GGG | + | chr3_3:86913232-86913251 | Msa0481140:CDS | 25.0% |
| !! | TTCTTTGAAAGAATTTCAAC+TGG | + | chr3_3:86913525-86913544 | Msa0481140:CDS | 25.0% |
| !! | TCTTTGAAAGAATTTCAACT+GGG | + | chr3_3:86913526-86913545 | Msa0481140:CDS | 25.0% |
| ! | ATTCATCAACTTCATCTTAT+TGG | + | chr3_3:86913748-86913767 | Msa0481140:CDS | 25.0% |
| ! | TTCATCAACTTCATCTTATT+GGG | + | chr3_3:86913749-86913768 | Msa0481140:CDS | 25.0% |
| !! | TTTTGTCTTCAAGAAAAACT+TGG | + | chr3_3:86912787-86912806 | Msa0481140:CDS | 25.0% |
| !!! | CCATGATTTTCATTTTTTGT+AGG | - | chr3_3:86913012-86913031 | None:intergenic | 25.0% |
| ! | CCTACAAAAAATGAAAATCA+TGG | + | chr3_3:86913009-86913028 | Msa0481140:CDS | 25.0% |
| ! | TTTAGTCCAAGAAAAAGAAA+TGG | + | chr3_3:86913231-86913250 | Msa0481140:CDS | 25.0% |
| ! | TTAGTCCAAGAAAAAGAAAT+GGG | + | chr3_3:86913232-86913251 | Msa0481140:CDS | 25.0% |
| !! | TTCTTTGAAAGAATTTCAAC+TGG | + | chr3_3:86913525-86913544 | Msa0481140:CDS | 25.0% |
| !! | TCTTTGAAAGAATTTCAACT+GGG | + | chr3_3:86913526-86913545 | Msa0481140:CDS | 25.0% |
| ! | ATTCATCAACTTCATCTTAT+TGG | + | chr3_3:86913748-86913767 | Msa0481140:CDS | 25.0% |
| ! | TTCATCAACTTCATCTTATT+GGG | + | chr3_3:86913749-86913768 | Msa0481140:CDS | 25.0% |
| TGAAGAAGAAGAAGATGAAA+CGG | - | chr3_3:86912851-86912870 | None:intergenic | 30.0% | |
| !! | TTCTAGAATAGTATTCATGG+TGG | - | chr3_3:86913044-86913063 | None:intergenic | 30.0% |
| TTTCTCTTAGCTAAGAGAAA+AGG | - | chr3_3:86913078-86913097 | None:intergenic | 30.0% | |
| ! | CAAAACCCATTTCTTTTTCT+TGG | - | chr3_3:86913240-86913259 | None:intergenic | 30.0% |
| !! | CAAGAAAAAGAAATGGGTTT+TGG | + | chr3_3:86913238-86913257 | Msa0481140:CDS | 30.0% |
| AGTAGCATTATTAAAGCTCT+TGG | - | chr3_3:86913322-86913341 | None:intergenic | 30.0% | |
| ATGGCATAGCAGATAAATTT+GGG | - | chr3_3:86913984-86914003 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGATGAAA+CGG | - | chr3_3:86912851-86912870 | None:intergenic | 30.0% | |
| !! | TTCTAGAATAGTATTCATGG+TGG | - | chr3_3:86913044-86913063 | None:intergenic | 30.0% |
| TTTCTCTTAGCTAAGAGAAA+AGG | - | chr3_3:86913078-86913097 | None:intergenic | 30.0% | |
| ! | CAAAACCCATTTCTTTTTCT+TGG | - | chr3_3:86913240-86913259 | None:intergenic | 30.0% |
| !! | CAAGAAAAAGAAATGGGTTT+TGG | + | chr3_3:86913238-86913257 | Msa0481140:CDS | 30.0% |
| AGTAGCATTATTAAAGCTCT+TGG | - | chr3_3:86913322-86913341 | None:intergenic | 30.0% | |
| ATGGCATAGCAGATAAATTT+GGG | - | chr3_3:86913984-86914003 | None:intergenic | 30.0% | |
| ! | AGATGAAGAAGGTGCAATAT+CGG | - | chr3_3:86912887-86912906 | None:intergenic | 35.0% |
| ATAGAGTTACTACCTCTTCT+TGG | - | chr3_3:86913189-86913208 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTAACTCTA+TGG | + | chr3_3:86913188-86913207 | Msa0481140:CDS | 35.0% | |
| !! | CTTAAGGAAAAGTGTTGTTC+AGG | + | chr3_3:86913354-86913373 | Msa0481140:CDS | 35.0% |
| GTTTCAAGATCTAGATCTGT+TGG | + | chr3_3:86913474-86913493 | Msa0481140:CDS | 35.0% | |
| GAAAGAATTTCAACTGGGTT+TGG | + | chr3_3:86913531-86913550 | Msa0481140:CDS | 35.0% | |
| TCAACGTGAAGGTAAATCAA+AGG | + | chr3_3:86913581-86913600 | Msa0481140:CDS | 35.0% | |
| CAACGTGAAGGTAAATCAAA+GGG | + | chr3_3:86913582-86913601 | Msa0481140:CDS | 35.0% | |
| TTGCTACTAAAAGCTCTCAT+AGG | - | chr3_3:86913882-86913901 | None:intergenic | 35.0% | |
| ! | ATGAGAGCTTTTAGTAGCAA+AGG | + | chr3_3:86913882-86913901 | Msa0481140:CDS | 35.0% |
| GATGGCATAGCAGATAAATT+TGG | - | chr3_3:86913985-86914004 | None:intergenic | 35.0% | |
| ! | AGATGAAGAAGGTGCAATAT+CGG | - | chr3_3:86912887-86912906 | None:intergenic | 35.0% |
| ATAGAGTTACTACCTCTTCT+TGG | - | chr3_3:86913189-86913208 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTAACTCTA+TGG | + | chr3_3:86913188-86913207 | Msa0481140:CDS | 35.0% | |
| !! | CTTAAGGAAAAGTGTTGTTC+AGG | + | chr3_3:86913354-86913373 | Msa0481140:CDS | 35.0% |
| GTTTCAAGATCTAGATCTGT+TGG | + | chr3_3:86913474-86913493 | Msa0481140:CDS | 35.0% | |
| GAAAGAATTTCAACTGGGTT+TGG | + | chr3_3:86913531-86913550 | Msa0481140:CDS | 35.0% | |
| TCAACGTGAAGGTAAATCAA+AGG | + | chr3_3:86913581-86913600 | Msa0481140:CDS | 35.0% | |
| CAACGTGAAGGTAAATCAAA+GGG | + | chr3_3:86913582-86913601 | Msa0481140:CDS | 35.0% | |
| TTGCTACTAAAAGCTCTCAT+AGG | - | chr3_3:86913882-86913901 | None:intergenic | 35.0% | |
| ! | ATGAGAGCTTTTAGTAGCAA+AGG | + | chr3_3:86913882-86913901 | Msa0481140:CDS | 35.0% |
| GATGGCATAGCAGATAAATT+TGG | - | chr3_3:86913985-86914004 | None:intergenic | 35.0% | |
| GGTGAAGATGATTCCATTGA+TGG | + | chr3_3:86912712-86912731 | Msa0481140:CDS | 40.0% | |
| AATGCATTGCATGCCATCAA+TGG | - | chr3_3:86912728-86912747 | None:intergenic | 40.0% | |
| AAACGGCATGAATAGGAAGA+GGG | - | chr3_3:86912834-86912853 | None:intergenic | 40.0% | |
| GAAGATGAAACGGCATGAAT+AGG | - | chr3_3:86912841-86912860 | None:intergenic | 40.0% | |
| GCAATATCGGATCTGAAAGA+AGG | - | chr3_3:86912874-86912893 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATGGAAGAAGA+AGG | - | chr3_3:86912937-86912956 | None:intergenic | 40.0% |
| ! | TGTTGCTGATACAGTGTTGA+TGG | - | chr3_3:86912947-86912966 | None:intergenic | 40.0% |
| AGAAACAGATGCTGAAACAG+AGG | - | chr3_3:86913112-86913131 | None:intergenic | 40.0% | |
| TCTGTTTCAGCATCTGTTTC+TGG | + | chr3_3:86913111-86913130 | Msa0481140:CDS | 40.0% | |
| GCTCTTGGAATTCAAACTCT+TGG | - | chr3_3:86913307-86913326 | None:intergenic | 40.0% | |
| TACTGCTTCAGCAAAGCTTA+AGG | + | chr3_3:86913338-86913357 | Msa0481140:CDS | 40.0% | |
| ! | TGTTGTTCAGGTTCTTCTCT+AGG | + | chr3_3:86913366-86913385 | Msa0481140:CDS | 40.0% |
| AGATCTAGATCTGTTGGATG+TGG | + | chr3_3:86913480-86913499 | Msa0481140:CDS | 40.0% | |
| AGAGTTGAATCTCAACGTGA+AGG | + | chr3_3:86913570-86913589 | Msa0481140:CDS | 40.0% | |
| !! | GGAGTAGTTGCTAGTTCTAA+CGG | + | chr3_3:86913603-86913622 | Msa0481140:CDS | 40.0% |
| GTACTCTCTCTTTCATGCAA+TGG | - | chr3_3:86913671-86913690 | None:intergenic | 40.0% | |
| !! | GAGAGAGTACTTAGAAGATG+TGG | + | chr3_3:86913681-86913700 | Msa0481140:CDS | 40.0% |
| ! | AGAGTACTTAGAAGATGTGG+AGG | + | chr3_3:86913684-86913703 | Msa0481140:CDS | 40.0% |
| AGATGTGGAGGAATATTCAG+TGG | + | chr3_3:86913696-86913715 | Msa0481140:CDS | 40.0% | |
| GTAACAGTTTCTCAAAACCG+TGG | + | chr3_3:86913825-86913844 | Msa0481140:CDS | 40.0% | |
| GGTGAAGATGATTCCATTGA+TGG | + | chr3_3:86912712-86912731 | Msa0481140:CDS | 40.0% | |
| AATGCATTGCATGCCATCAA+TGG | - | chr3_3:86912728-86912747 | None:intergenic | 40.0% | |
| AAACGGCATGAATAGGAAGA+GGG | - | chr3_3:86912834-86912853 | None:intergenic | 40.0% | |
| GAAGATGAAACGGCATGAAT+AGG | - | chr3_3:86912841-86912860 | None:intergenic | 40.0% | |
| GCAATATCGGATCTGAAAGA+AGG | - | chr3_3:86912874-86912893 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATGGAAGAAGA+AGG | - | chr3_3:86912937-86912956 | None:intergenic | 40.0% |
| ! | TGTTGCTGATACAGTGTTGA+TGG | - | chr3_3:86912947-86912966 | None:intergenic | 40.0% |
| AGAAACAGATGCTGAAACAG+AGG | - | chr3_3:86913112-86913131 | None:intergenic | 40.0% | |
| TCTGTTTCAGCATCTGTTTC+TGG | + | chr3_3:86913111-86913130 | Msa0481140:CDS | 40.0% | |
| GCTCTTGGAATTCAAACTCT+TGG | - | chr3_3:86913307-86913326 | None:intergenic | 40.0% | |
| TACTGCTTCAGCAAAGCTTA+AGG | + | chr3_3:86913338-86913357 | Msa0481140:CDS | 40.0% | |
| ! | TGTTGTTCAGGTTCTTCTCT+AGG | + | chr3_3:86913366-86913385 | Msa0481140:CDS | 40.0% |
| AGATCTAGATCTGTTGGATG+TGG | + | chr3_3:86913480-86913499 | Msa0481140:CDS | 40.0% | |
| AGAGTTGAATCTCAACGTGA+AGG | + | chr3_3:86913570-86913589 | Msa0481140:CDS | 40.0% | |
| !! | GGAGTAGTTGCTAGTTCTAA+CGG | + | chr3_3:86913603-86913622 | Msa0481140:CDS | 40.0% |
| GTACTCTCTCTTTCATGCAA+TGG | - | chr3_3:86913671-86913690 | None:intergenic | 40.0% | |
| !! | GAGAGAGTACTTAGAAGATG+TGG | + | chr3_3:86913681-86913700 | Msa0481140:CDS | 40.0% |
| ! | AGAGTACTTAGAAGATGTGG+AGG | + | chr3_3:86913684-86913703 | Msa0481140:CDS | 40.0% |
| AGATGTGGAGGAATATTCAG+TGG | + | chr3_3:86913696-86913715 | Msa0481140:CDS | 40.0% | |
| GTAACAGTTTCTCAAAACCG+TGG | + | chr3_3:86913825-86913844 | Msa0481140:CDS | 40.0% | |
| ATGGAAGCTATGAAAGGAGG+TGG | + | chr3_3:86912673-86912692 | Msa0481140:CDS | 45.0% | |
| GGAGGTGGAAGAGTTAACAT+TGG | + | chr3_3:86912688-86912707 | Msa0481140:CDS | 45.0% | |
| GGTGGAAGAGTTAACATTGG+TGG | + | chr3_3:86912691-86912710 | Msa0481140:CDS | 45.0% | |
| CATCCTTACAGAAACAACCC+TGG | + | chr3_3:86912751-86912770 | Msa0481140:CDS | 45.0% | |
| CTTACAGAAACAACCCTGGT+GGG | + | chr3_3:86912755-86912774 | Msa0481140:CDS | 45.0% | |
| ! | AAAAAGCACAGATCCCACCA+GGG | - | chr3_3:86912771-86912790 | None:intergenic | 45.0% |
| GAAACGGCATGAATAGGAAG+AGG | - | chr3_3:86912835-86912854 | None:intergenic | 45.0% | |
| GTGGAAGTGGAAGATGAAGA+AGG | - | chr3_3:86912898-86912917 | None:intergenic | 45.0% | |
| ! | ACAATGACGAGTAGTGGAAG+TGG | - | chr3_3:86912911-86912930 | None:intergenic | 45.0% |
| ! | GTGTTGATGGAAGAAGAAGG+AGG | - | chr3_3:86912934-86912953 | None:intergenic | 45.0% |
| TCAACTGCAACACCAAGAAG+AGG | + | chr3_3:86913174-86913193 | Msa0481140:CDS | 45.0% | |
| ! | GTGTTGTTGCTGCTGCTATT+AGG | - | chr3_3:86913435-86913454 | None:intergenic | 45.0% |
| AATAGCAGCAGCAACAACAC+AGG | + | chr3_3:86913435-86913454 | Msa0481140:CDS | 45.0% | |
| TCTCTTTCATGCAATGGTGG+TGG | - | chr3_3:86913665-86913684 | None:intergenic | 45.0% | |
| CTCTCTCTTTCATGCAATGG+TGG | - | chr3_3:86913668-86913687 | None:intergenic | 45.0% | |
| ! | TCTGCTGATGATGCTGTGAA+TGG | + | chr3_3:86913783-86913802 | Msa0481140:CDS | 45.0% |
| GTGAATGGAGGAGGAAAACA+AGG | + | chr3_3:86913798-86913817 | Msa0481140:CDS | 45.0% | |
| ACAGTTTCTCAAAACCGTGG+TGG | + | chr3_3:86913828-86913847 | Msa0481140:CDS | 45.0% | |
| ! | AAAACCGTGGTGGAAAGAGT+TGG | + | chr3_3:86913838-86913857 | Msa0481140:CDS | 45.0% |
| ! | AAACCGTGGTGGAAAGAGTT+GGG | + | chr3_3:86913839-86913858 | Msa0481140:CDS | 45.0% |
| ATGGAAGCTATGAAAGGAGG+TGG | + | chr3_3:86912673-86912692 | Msa0481140:CDS | 45.0% | |
| GGAGGTGGAAGAGTTAACAT+TGG | + | chr3_3:86912688-86912707 | Msa0481140:CDS | 45.0% | |
| GGTGGAAGAGTTAACATTGG+TGG | + | chr3_3:86912691-86912710 | Msa0481140:CDS | 45.0% | |
| CATCCTTACAGAAACAACCC+TGG | + | chr3_3:86912751-86912770 | Msa0481140:CDS | 45.0% | |
| CTTACAGAAACAACCCTGGT+GGG | + | chr3_3:86912755-86912774 | Msa0481140:CDS | 45.0% | |
| ! | AAAAAGCACAGATCCCACCA+GGG | - | chr3_3:86912771-86912790 | None:intergenic | 45.0% |
| GAAACGGCATGAATAGGAAG+AGG | - | chr3_3:86912835-86912854 | None:intergenic | 45.0% | |
| GTGGAAGTGGAAGATGAAGA+AGG | - | chr3_3:86912898-86912917 | None:intergenic | 45.0% | |
| ! | ACAATGACGAGTAGTGGAAG+TGG | - | chr3_3:86912911-86912930 | None:intergenic | 45.0% |
| ! | GTGTTGATGGAAGAAGAAGG+AGG | - | chr3_3:86912934-86912953 | None:intergenic | 45.0% |
| TCAACTGCAACACCAAGAAG+AGG | + | chr3_3:86913174-86913193 | Msa0481140:CDS | 45.0% | |
| ! | GTGTTGTTGCTGCTGCTATT+AGG | - | chr3_3:86913435-86913454 | None:intergenic | 45.0% |
| AATAGCAGCAGCAACAACAC+AGG | + | chr3_3:86913435-86913454 | Msa0481140:CDS | 45.0% | |
| TCTCTTTCATGCAATGGTGG+TGG | - | chr3_3:86913665-86913684 | None:intergenic | 45.0% | |
| CTCTCTCTTTCATGCAATGG+TGG | - | chr3_3:86913668-86913687 | None:intergenic | 45.0% | |
| ! | TCTGCTGATGATGCTGTGAA+TGG | + | chr3_3:86913783-86913802 | Msa0481140:CDS | 45.0% |
| GTGAATGGAGGAGGAAAACA+AGG | + | chr3_3:86913798-86913817 | Msa0481140:CDS | 45.0% | |
| ACAGTTTCTCAAAACCGTGG+TGG | + | chr3_3:86913828-86913847 | Msa0481140:CDS | 45.0% | |
| ! | AAAACCGTGGTGGAAAGAGT+TGG | + | chr3_3:86913838-86913857 | Msa0481140:CDS | 45.0% |
| ! | AAACCGTGGTGGAAAGAGTT+GGG | + | chr3_3:86913839-86913858 | Msa0481140:CDS | 45.0% |
| !! | CCACCAGGGTTGTTTCTGTA+AGG | - | chr3_3:86912757-86912776 | None:intergenic | 50.0% |
| CCTTACAGAAACAACCCTGG+TGG | + | chr3_3:86912754-86912773 | Msa0481140:CDS | 50.0% | |
| ! | CAAAAAGCACAGATCCCACC+AGG | - | chr3_3:86912772-86912791 | None:intergenic | 50.0% |
| AGGAGGACAATGACGAGTAG+TGG | - | chr3_3:86912917-86912936 | None:intergenic | 50.0% | |
| TGTGGTAGCAGAAGCTTCTC+TGG | + | chr3_3:86913498-86913517 | Msa0481140:CDS | 50.0% | |
| !! | CTTTCATGCAATGGTGGTGG+TGG | - | chr3_3:86913662-86913681 | None:intergenic | 50.0% |
| ! | GCTGATGATGCTGTGAATGG+AGG | + | chr3_3:86913786-86913805 | Msa0481140:CDS | 50.0% |
| GATGATGCTGTGAATGGAGG+AGG | + | chr3_3:86913789-86913808 | Msa0481140:CDS | 50.0% | |
| ! | AACCGTGGTGGAAAGAGTTG+GGG | + | chr3_3:86913840-86913859 | Msa0481140:CDS | 50.0% |
| AACCCCAACTCTTTCCACCA+CGG | - | chr3_3:86913845-86913864 | None:intergenic | 50.0% | |
| TGGTGGAAAGAGTTGGGGTT+GGG | + | chr3_3:86913845-86913864 | Msa0481140:CDS | 50.0% | |
| !! | CCACCAGGGTTGTTTCTGTA+AGG | - | chr3_3:86912757-86912776 | None:intergenic | 50.0% |
| CCTTACAGAAACAACCCTGG+TGG | + | chr3_3:86912754-86912773 | Msa0481140:CDS | 50.0% | |
| ! | CAAAAAGCACAGATCCCACC+AGG | - | chr3_3:86912772-86912791 | None:intergenic | 50.0% |
| AGGAGGACAATGACGAGTAG+TGG | - | chr3_3:86912917-86912936 | None:intergenic | 50.0% | |
| TGTGGTAGCAGAAGCTTCTC+TGG | + | chr3_3:86913498-86913517 | Msa0481140:CDS | 50.0% | |
| !! | CTTTCATGCAATGGTGGTGG+TGG | - | chr3_3:86913662-86913681 | None:intergenic | 50.0% |
| ! | GCTGATGATGCTGTGAATGG+AGG | + | chr3_3:86913786-86913805 | Msa0481140:CDS | 50.0% |
| GATGATGCTGTGAATGGAGG+AGG | + | chr3_3:86913789-86913808 | Msa0481140:CDS | 50.0% | |
| ! | AACCGTGGTGGAAAGAGTTG+GGG | + | chr3_3:86913840-86913859 | Msa0481140:CDS | 50.0% |
| AACCCCAACTCTTTCCACCA+CGG | - | chr3_3:86913845-86913864 | None:intergenic | 50.0% | |
| TGGTGGAAAGAGTTGGGGTT+GGG | + | chr3_3:86913845-86913864 | Msa0481140:CDS | 50.0% | |
| !! | TCATGCAATGGTGGTGGTGG+TGG | - | chr3_3:86913659-86913678 | None:intergenic | 55.0% |
| ! | GTGGTGGAAAGAGTTGGGGT+TGG | + | chr3_3:86913844-86913863 | Msa0481140:CDS | 55.0% |
| !! | TCATGCAATGGTGGTGGTGG+TGG | - | chr3_3:86913659-86913678 | None:intergenic | 55.0% |
| ! | GTGGTGGAAAGAGTTGGGGT+TGG | + | chr3_3:86913844-86913863 | Msa0481140:CDS | 55.0% |
| !! | GGTGGTGGTGGTCTTGAGCA+CGG | - | chr3_3:86913644-86913663 | None:intergenic | 60.0% |
| !! | TGCAATGGTGGTGGTGGTGG+TGG | - | chr3_3:86913656-86913675 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTCTTGAGCA+CGG | - | chr3_3:86913644-86913663 | None:intergenic | 60.0% |
| !! | TGCAATGGTGGTGGTGGTGG+TGG | - | chr3_3:86913656-86913675 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86912673 | 86914019 | 86912673 | ID=Msa0481140;Name=Msa0481140 |
| chr3_3 | mRNA | 86912673 | 86914019 | 86912673 | ID=Msa0481140-mRNA-1;Parent=Msa0481140;Name=Msa0481140-mRNA-1;_AED=0.36;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|448 |
| chr3_3 | exon | 86912673 | 86914019 | 86912673 | ID=Msa0481140-mRNA-1:exon:25165;Parent=Msa0481140-mRNA-1 |
| chr3_3 | CDS | 86912673 | 86914019 | 86912673 | ID=Msa0481140-mRNA-1:cds;Parent=Msa0481140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
