Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217910 | AES91885.1 | 92.358 | 458 | 14 | 7 | 1 | 450 | 1 | 445 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032180 | Msa1217910 | 0.838658 | 2.523798e-57 | -8.615850e-47 |
| Msa0032460 | Msa1217910 | 0.833982 | 3.900098e-56 | -8.615850e-47 |
| Msa0035140 | Msa1217910 | 0.800394 | 1.471358e-48 | -8.615850e-47 |
| Msa0080610 | Msa1217910 | 0.802454 | 5.568982e-49 | -8.615850e-47 |
| Msa0606100 | Msa1217910 | 0.816155 | 6.397654e-52 | -8.615850e-47 |
| Msa0607800 | Msa1217910 | 0.800972 | 1.121431e-48 | -8.615850e-47 |
| Msa0615630 | Msa1217910 | 0.814194 | 1.743850e-51 | -8.615850e-47 |
| Msa0621710 | Msa1217910 | 0.800040 | 1.737050e-48 | -8.615850e-47 |
| Msa0647050 | Msa1217910 | 0.807019 | 6.201096e-50 | -8.615850e-47 |
| Msa0658640 | Msa1217910 | 0.801954 | 7.055925e-49 | -8.615850e-47 |
| Msa0698730 | Msa1217910 | 0.827588 | 1.439855e-54 | -8.615850e-47 |
| Msa0703600 | Msa1217910 | 0.806498 | 7.989768e-50 | -8.615850e-47 |
| Msa0709200 | Msa1217910 | 0.803781 | 2.959598e-49 | -8.615850e-47 |
| Msa0709440 | Msa1217910 | 0.807092 | 5.983005e-50 | -8.615850e-47 |
| Msa0745720 | Msa1217910 | 0.800395 | 1.470744e-48 | -8.615850e-47 |
| Msa0773630 | Msa1217910 | 0.807490 | 4.928038e-50 | -8.615850e-47 |
| Msa0780910 | Msa1217910 | 0.809596 | 1.749621e-50 | -8.615850e-47 |
| Msa0798080 | Msa1217910 | 0.832149 | 1.114598e-55 | -8.615850e-47 |
| Msa0818880 | Msa1217910 | 0.806763 | 7.023214e-50 | -8.615850e-47 |
| Msa0821160 | Msa1217910 | 0.809585 | 1.759602e-50 | -8.615850e-47 |
| Msa0140280 | Msa1217910 | 0.832034 | 1.190251e-55 | -8.615850e-47 |
| Msa0173290 | Msa1217910 | 0.812281 | 4.587971e-51 | -8.615850e-47 |
| Msa0185960 | Msa1217910 | 0.804805 | 1.810740e-49 | -8.615850e-47 |
| Msa0213610 | Msa1217910 | 0.821011 | 5.066132e-53 | -8.615850e-47 |
| Msa0367520 | Msa1217910 | 0.806974 | 6.337421e-50 | -8.615850e-47 |
| Msa0380670 | Msa1217910 | 0.828704 | 7.755370e-55 | -8.615850e-47 |
| Msa0389950 | Msa1217910 | 0.809733 | 1.635395e-50 | -8.615850e-47 |
| Msa0430300 | Msa1217910 | 0.825107 | 5.613177e-54 | -8.615850e-47 |
| Msa0430480 | Msa1217910 | 0.810568 | 1.080427e-50 | -8.615850e-47 |
| Msa0481140 | Msa1217910 | 0.985366 | 2.408627e-163 | -8.615850e-47 |
| Msa0481890 | Msa1217910 | 0.804843 | 1.777782e-49 | -8.615850e-47 |
| Msa1000970 | Msa1217910 | 0.809022 | 2.323548e-50 | -8.615850e-47 |
| Msa1003740 | Msa1217910 | 0.851987 | 6.201789e-61 | -8.615850e-47 |
| Msa1003800 | Msa1217910 | 0.854001 | 1.646262e-61 | -8.615850e-47 |
| Msa1003930 | Msa1217910 | 0.856985 | 2.221526e-62 | -8.615850e-47 |
| Msa1033920 | Msa1217910 | 0.821394 | 4.133457e-53 | -8.615850e-47 |
| Msa1034600 | Msa1217910 | 0.800258 | 1.567849e-48 | -8.615850e-47 |
| Msa1042160 | Msa1217910 | 0.807703 | 4.440223e-50 | -8.615850e-47 |
| Msa1042190 | Msa1217910 | 0.812049 | 5.154476e-51 | -8.615850e-47 |
| Msa1042880 | Msa1217910 | 0.807619 | 4.625931e-50 | -8.615850e-47 |
| Msa1077990 | Msa1217910 | 0.831502 | 1.609996e-55 | -8.615850e-47 |
| Msa1078880 | Msa1217910 | 0.819093 | 1.391446e-52 | -8.615850e-47 |
| Msa1078970 | Msa1217910 | 0.812458 | 4.197323e-51 | -8.615850e-47 |
| Msa1080000 | Msa1217910 | 0.804801 | 1.814341e-49 | -8.615850e-47 |
| Msa1083080 | Msa1217910 | 0.819168 | 1.337860e-52 | -8.615850e-47 |
| Msa1084530 | Msa1217910 | 0.803348 | 3.638239e-49 | -8.615850e-47 |
| Msa0293040 | Msa1217910 | 0.820225 | 7.675809e-53 | -8.615850e-47 |
| Msa1116660 | Msa1217910 | 0.804259 | 2.353861e-49 | -8.615850e-47 |
| Msa1125820 | Msa1217910 | 0.811209 | 7.850737e-51 | -8.615850e-47 |
| Msa1125990 | Msa1217910 | 0.811775 | 5.913307e-51 | -8.615850e-47 |
| Msa1127960 | Msa1217910 | 0.821686 | 3.539364e-53 | -8.615850e-47 |
| Msa1132530 | Msa1217910 | 0.817317 | 3.510390e-52 | -8.615850e-47 |
| Msa1154550 | Msa1217910 | 0.802519 | 5.399397e-49 | -8.615850e-47 |
| Msa1162880 | Msa1217910 | 0.804459 | 2.138588e-49 | -8.615850e-47 |
| Msa1167470 | Msa1217910 | 0.815773 | 7.785372e-52 | -8.615850e-47 |
| Msa1169190 | Msa1217910 | 0.821072 | 4.903283e-53 | -8.615850e-47 |
| Msa1171290 | Msa1217910 | 0.806478 | 8.065746e-50 | -8.615850e-47 |
| Msa1186520 | Msa1217910 | 0.800744 | 1.248343e-48 | -8.615850e-47 |
| Msa1214350 | Msa1217910 | 0.801899 | 7.241686e-49 | -8.615850e-47 |
| Msa1216090 | Msa1217910 | 0.824472 | 7.925541e-54 | -8.615850e-47 |
| Msa1216110 | Msa1217910 | 0.800522 | 1.385539e-48 | -8.615850e-47 |
| Msa1217910 | Msa1226520 | 0.805178 | 1.513562e-49 | -8.615850e-47 |
| Msa1217910 | Msa1240770 | 0.805051 | 1.609097e-49 | -8.615850e-47 |
| Msa1217910 | Msa1263780 | 0.812080 | 5.074358e-51 | -8.615850e-47 |
| Msa1217910 | Msa1328300 | 0.873967 | 9.747417e-68 | -8.615850e-47 |
| Msa1217910 | Msa1405460 | 0.803738 | 3.020500e-49 | -8.615850e-47 |
| Msa1217910 | Msa1447170 | 0.812467 | 4.178689e-51 | -8.615850e-47 |
| Msa0483910 | Msa1217910 | 0.854647 | 1.070630e-61 | -8.615850e-47 |
| Msa0484570 | Msa1217910 | 0.817819 | 2.706066e-52 | -8.615850e-47 |
| Msa0529030 | Msa1217910 | 0.807090 | 5.989455e-50 | -8.615850e-47 |
| Msa0561560 | Msa1217910 | 0.804758 | 1.851970e-49 | -8.615850e-47 |
| Msa0571620 | Msa1217910 | 0.813499 | 2.481239e-51 | -8.615850e-47 |
| Msa0573760 | Msa1217910 | 0.812626 | 3.856634e-51 | -8.615850e-47 |
| Msa0585340 | Msa1217910 | 0.808261 | 3.378636e-50 | -8.615850e-47 |
| Msa0863620 | Msa1217910 | 0.805167 | 1.521073e-49 | -8.615850e-47 |
| Msa0867110 | Msa1217910 | 0.802833 | 4.651365e-49 | -8.615850e-47 |
| Msa0909760 | Msa1217910 | 0.817090 | 3.948136e-52 | -8.615850e-47 |
| Msa0966710 | Msa1217910 | 0.804162 | 2.465605e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217910 | MtrunA17_Chr4g0067481 | 92.358 | 458 | 14 | 7 | 1 | 450 | 7 | 451 | 0.0 | 624 |
| Msa1217910 | MtrunA17_Chr2g0295691 | 47.500 | 480 | 130 | 21 | 1 | 450 | 1 | 388 | 1.96e-85 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217910 | AT3G06868.1 | 39.868 | 454 | 172 | 13 | 10 | 449 | 2 | 368 | 1.39e-69 | 225 |
| Msa1217910 | AT5G49100.1 | 77.273 | 44 | 10 | 0 | 15 | 58 | 6 | 49 | 5.69e-18 | 85.9 |
Find 74 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCAGCATCTGTTTC+TGG | 0.093012 | 8_1:-80434724 | Msa1217910:CDS |
| ATTCATCAACTTCATCTTAT+TGG | 0.130948 | 8_1:-80434087 | Msa1217910:CDS |
| TTCATCAACTTCATCTTATT+GGG | 0.273852 | 8_1:-80434086 | Msa1217910:CDS |
| GTGTTGTTGCTGCTGCTATT+AGG | 0.305216 | 8_1:+80434403 | None:intergenic |
| GAAAGAATTTCAACTGGGTT+TGG | 0.321464 | 8_1:-80434304 | Msa1217910:CDS |
| GATGGCATAGCAGATAAATT+TGG | 0.321817 | 8_1:+80433854 | None:intergenic |
| ATAGAGTTACTACCTCTTCT+TGG | 0.326180 | 8_1:+80434649 | None:intergenic |
| CTTAAGGAAAAGTGTTGTTC+AGG | 0.342745 | 8_1:-80434481 | Msa1217910:CDS |
| TTCTTTGAAAGAATTTCAAC+TGG | 0.376508 | 8_1:-80434310 | Msa1217910:CDS |
| TGTTGCTGATACAGTGTTGA+TGG | 0.397885 | 8_1:+80434891 | None:intergenic |
| AGTAGCATTATTAAAGCTCT+TGG | 0.412538 | 8_1:+80434516 | None:intergenic |
| GAAGATGAAACGGCATGAAT+AGG | 0.417575 | 8_1:+80434997 | None:intergenic |
| TGGTGGAAAGAGTTGGGGTT+GGG | 0.418864 | 8_1:-80433990 | Msa1217910:CDS |
| GCTCTTGGAATTCAAACTCT+TGG | 0.420196 | 8_1:+80434531 | None:intergenic |
| GAGAGAGTACTTAGAAGATG+TGG | 0.429448 | 8_1:-80434154 | Msa1217910:CDS |
| TGTGGTAGCAGAAGCTTCTC+TGG | 0.436507 | 8_1:-80434337 | Msa1217910:CDS |
| AAACCGTGGTGGAAAGAGTT+GGG | 0.438847 | 8_1:-80433996 | Msa1217910:CDS |
| TTTCTCTTAGCTAAGAGAAA+AGG | 0.439645 | 8_1:+80434760 | None:intergenic |
| TCATGCAATGGTGGTGGTGG+TGG | 0.442897 | 8_1:+80434179 | None:intergenic |
| CCATCTTTGCTTTCTGCTAG+AGG | 0.444298 | 8_1:-80433836 | Msa1217910:CDS |
| TACTGCTTCAGCAAAGCTTA+AGG | 0.447924 | 8_1:-80434497 | Msa1217910:CDS |
| AAGAAGAGGTAGTAACTCTA+TGG | 0.451639 | 8_1:-80434647 | Msa1217910:CDS |
| CCACCAGGGTTGTTTCTGTA+AGG | 0.453511 | 8_1:+80435081 | None:intergenic |
| AGATGAAGAAGGTGCAATAT+CGG | 0.460435 | 8_1:+80434951 | None:intergenic |
| GTTTCAAGATCTAGATCTGT+TGG | 0.462444 | 8_1:-80434361 | Msa1217910:CDS |
| AATGCATTGCATGCCATCAA+TGG | 0.463242 | 8_1:+80435110 | None:intergenic |
| CTTTCATGCAATGGTGGTGG+TGG | 0.470222 | 8_1:+80434176 | None:intergenic |
| TGTTGTTCAGGTTCTTCTCT+AGG | 0.476919 | 8_1:-80434469 | Msa1217910:CDS |
| TTGCTACTAAAAGCTCTCAT+AGG | 0.486290 | 8_1:+80433956 | None:intergenic |
| GGTGAAGATGATTCCATTGA+TGG | 0.500906 | 8_1:-80435123 | Msa1217910:CDS |
| CTCTCTCTTTCATGCAATGG+TGG | 0.507725 | 8_1:+80434170 | None:intergenic |
| TCTGCTGATGATGCTGTGAA+TGG | 0.510492 | 8_1:-80434052 | Msa1217910:CDS |
| TGAAGAAGAAGAAGATGAAA+CGG | 0.520106 | 8_1:+80434987 | None:intergenic |
| CCTCTAGCAGAAAGCAAAGA+TGG | 0.523438 | 8_1:+80433836 | None:intergenic |
| CAACGTGAAGGTAAATCAAA+GGG | 0.524007 | 8_1:-80434253 | Msa1217910:CDS |
| AGAGTACTTAGAAGATGTGG+AGG | 0.530225 | 8_1:-80434151 | Msa1217910:CDS |
| TCAACGTGAAGGTAAATCAA+AGG | 0.542593 | 8_1:-80434254 | Msa1217910:CDS |
| AGGAGGACAATGACGAGTAG+TGG | 0.546244 | 8_1:+80434921 | None:intergenic |
| ACAATGACGAGTAGTGGAAG+TGG | 0.547008 | 8_1:+80434927 | None:intergenic |
| GTACTCTCTCTTTCATGCAA+TGG | 0.549611 | 8_1:+80434167 | None:intergenic |
| TCTCTTTCATGCAATGGTGG+TGG | 0.551870 | 8_1:+80434173 | None:intergenic |
| AAAACCGTGGTGGAAAGAGT+TGG | 0.552394 | 8_1:-80433997 | Msa1217910:CDS |
| GTGGAAGTGGAAGATGAAGA+AGG | 0.557173 | 8_1:+80434940 | None:intergenic |
| ATGGAAGCTATGAAAGGAGG+TGG | 0.557344 | 8_1:-80435162 | Msa1217910:CDS |
| GGTGGTGGTGGTCTTGAGCA+CGG | 0.563918 | 8_1:+80434194 | None:intergenic |
| GGAGTAGTTGCTAGTTCTAA+CGG | 0.567503 | 8_1:-80434232 | Msa1217910:CDS |
| AGATCTAGATCTGTTGGATG+TGG | 0.570100 | 8_1:-80434355 | Msa1217910:CDS |
| GAAACGGCATGAATAGGAAG+AGG | 0.578837 | 8_1:+80435003 | None:intergenic |
| GGTGGAAGAGTTAACATTGG+TGG | 0.580786 | 8_1:-80435144 | Msa1217910:CDS |
| ACAGTGTTGATGGAAGAAGA+AGG | 0.581749 | 8_1:+80434901 | None:intergenic |
| GCAATATCGGATCTGAAAGA+AGG | 0.583095 | 8_1:+80434964 | None:intergenic |
| CTCCACATGGAAGCTATGAA+AGG | 0.591526 | 8_1:-80435168 | None:intergenic |
| GATGATGCTGTGAATGGAGG+AGG | 0.601572 | 8_1:-80434046 | Msa1217910:CDS |
| GTGAATGGAGGAGGAAAACA+AGG | 0.606362 | 8_1:-80434037 | Msa1217910:CDS |
| TCAACTGCAACACCAAGAAG+AGG | 0.609625 | 8_1:-80434661 | Msa1217910:CDS |
| GCTGATGATGCTGTGAATGG+AGG | 0.611420 | 8_1:-80434049 | Msa1217910:CDS |
| GTGGTGGAAAGAGTTGGGGT+TGG | 0.618705 | 8_1:-80433991 | Msa1217910:CDS |
| AGAGTTGAATCTCAACGTGA+AGG | 0.620108 | 8_1:-80434265 | Msa1217910:CDS |
| AGAAACAGATGCTGAAACAG+AGG | 0.622276 | 8_1:+80434726 | None:intergenic |
| AACCGTGGTGGAAAGAGTTG+GGG | 0.625855 | 8_1:-80433995 | Msa1217910:CDS |
| GGAGGTGGAAGAGTTAACAT+TGG | 0.629960 | 8_1:-80435147 | Msa1217910:CDS |
| AACCCCAACTCTTTCCACCA+CGG | 0.631839 | 8_1:+80433993 | None:intergenic |
| CACATGGAAGCTATGAAAGG+AGG | 0.640939 | 8_1:-80435165 | Msa1217910:CDS |
| CTTACAGAAACAACCCTGGT+GGG | 0.650568 | 8_1:-80435080 | Msa1217910:CDS |
| AGATGTGGAGGAATATTCAG+TGG | 0.663518 | 8_1:-80434139 | Msa1217910:CDS |
| TCTTTGAAAGAATTTCAACT+GGG | 0.667021 | 8_1:-80434309 | Msa1217910:CDS |
| TTCTAGAATAGTATTCATGG+TGG | 0.674918 | 8_1:+80434794 | None:intergenic |
| AAACGGCATGAATAGGAAGA+GGG | 0.675809 | 8_1:+80435004 | None:intergenic |
| CCTTACAGAAACAACCCTGG+TGG | 0.681499 | 8_1:-80435081 | Msa1217910:CDS |
| GTAACAGTTTCTCAAAACCG+TGG | 0.681671 | 8_1:-80434010 | Msa1217910:CDS |
| AATAGCAGCAGCAACAACAC+AGG | 0.684937 | 8_1:-80434400 | Msa1217910:CDS |
| ACAGTTTCTCAAAACCGTGG+TGG | 0.685632 | 8_1:-80434007 | Msa1217910:CDS |
| CATCCTTACAGAAACAACCC+TGG | 0.718016 | 8_1:-80435084 | Msa1217910:CDS |
| GTGTTGATGGAAGAAGAAGG+AGG | 0.756349 | 8_1:+80434904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTAGAATAGTATTCA+TGG | + | chr8_1:80434206-80434225 | None:intergenic | 20.0% |
| !!! | TTTTTCTAGAATAGTATTCA+TGG | + | chr8_1:80434206-80434225 | None:intergenic | 20.0% |
| !! | TTTTGTCTTCAAGAAAAACT+TGG | - | chr8_1:80433946-80433965 | Msa1217910:CDS | 25.0% |
| !!! | CCATGATTTTCATTTTTTGT+AGG | + | chr8_1:80434171-80434190 | None:intergenic | 25.0% |
| ! | CCTACAAAAAATGAAAATCA+TGG | - | chr8_1:80434168-80434187 | Msa1217910:CDS | 25.0% |
| ! | TTTAGTCCAAGAAAAAGAAA+TGG | - | chr8_1:80434390-80434409 | Msa1217910:CDS | 25.0% |
| ! | TTAGTCCAAGAAAAAGAAAT+GGG | - | chr8_1:80434391-80434410 | Msa1217910:CDS | 25.0% |
| !! | TTCTTTGAAAGAATTTCAAC+TGG | - | chr8_1:80434684-80434703 | Msa1217910:CDS | 25.0% |
| !! | TCTTTGAAAGAATTTCAACT+GGG | - | chr8_1:80434685-80434704 | Msa1217910:CDS | 25.0% |
| ! | ATTCATCAACTTCATCTTAT+TGG | - | chr8_1:80434907-80434926 | Msa1217910:CDS | 25.0% |
| ! | TTCATCAACTTCATCTTATT+GGG | - | chr8_1:80434908-80434927 | Msa1217910:CDS | 25.0% |
| !! | TTTTGTCTTCAAGAAAAACT+TGG | - | chr8_1:80433946-80433965 | Msa1217910:CDS | 25.0% |
| !!! | CCATGATTTTCATTTTTTGT+AGG | + | chr8_1:80434171-80434190 | None:intergenic | 25.0% |
| ! | CCTACAAAAAATGAAAATCA+TGG | - | chr8_1:80434168-80434187 | Msa1217910:CDS | 25.0% |
| ! | TTTAGTCCAAGAAAAAGAAA+TGG | - | chr8_1:80434390-80434409 | Msa1217910:CDS | 25.0% |
| ! | TTAGTCCAAGAAAAAGAAAT+GGG | - | chr8_1:80434391-80434410 | Msa1217910:CDS | 25.0% |
| !! | TTCTTTGAAAGAATTTCAAC+TGG | - | chr8_1:80434684-80434703 | Msa1217910:CDS | 25.0% |
| !! | TCTTTGAAAGAATTTCAACT+GGG | - | chr8_1:80434685-80434704 | Msa1217910:CDS | 25.0% |
| ! | ATTCATCAACTTCATCTTAT+TGG | - | chr8_1:80434907-80434926 | Msa1217910:CDS | 25.0% |
| ! | TTCATCAACTTCATCTTATT+GGG | - | chr8_1:80434908-80434927 | Msa1217910:CDS | 25.0% |
| TGAAGAAGAAGAAGATGAAA+CGG | + | chr8_1:80434010-80434029 | None:intergenic | 30.0% | |
| !! | TTCTAGAATAGTATTCATGG+TGG | + | chr8_1:80434203-80434222 | None:intergenic | 30.0% |
| TTTCTCTTAGCTAAGAGAAA+AGG | + | chr8_1:80434237-80434256 | None:intergenic | 30.0% | |
| ! | CAAAACCCATTTCTTTTTCT+TGG | + | chr8_1:80434399-80434418 | None:intergenic | 30.0% |
| !! | CAAGAAAAAGAAATGGGTTT+TGG | - | chr8_1:80434397-80434416 | Msa1217910:CDS | 30.0% |
| AGTAGCATTATTAAAGCTCT+TGG | + | chr8_1:80434481-80434500 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGATGAAA+CGG | + | chr8_1:80434010-80434029 | None:intergenic | 30.0% | |
| !! | TTCTAGAATAGTATTCATGG+TGG | + | chr8_1:80434203-80434222 | None:intergenic | 30.0% |
| TTTCTCTTAGCTAAGAGAAA+AGG | + | chr8_1:80434237-80434256 | None:intergenic | 30.0% | |
| ! | CAAAACCCATTTCTTTTTCT+TGG | + | chr8_1:80434399-80434418 | None:intergenic | 30.0% |
| !! | CAAGAAAAAGAAATGGGTTT+TGG | - | chr8_1:80434397-80434416 | Msa1217910:CDS | 30.0% |
| AGTAGCATTATTAAAGCTCT+TGG | + | chr8_1:80434481-80434500 | None:intergenic | 30.0% | |
| ! | AGATGAAGAAGGTGCAATAT+CGG | + | chr8_1:80434046-80434065 | None:intergenic | 35.0% |
| ATAGAGTTACTACCTCTTCT+TGG | + | chr8_1:80434348-80434367 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTAACTCTA+TGG | - | chr8_1:80434347-80434366 | Msa1217910:CDS | 35.0% | |
| !! | CTTAAGGAAAAGTGTTGTTC+AGG | - | chr8_1:80434513-80434532 | Msa1217910:CDS | 35.0% |
| GTTTCAAGATCTAGATCTGT+TGG | - | chr8_1:80434633-80434652 | Msa1217910:CDS | 35.0% | |
| GAAAGAATTTCAACTGGGTT+TGG | - | chr8_1:80434690-80434709 | Msa1217910:CDS | 35.0% | |
| TCAACGTGAAGGTAAATCAA+AGG | - | chr8_1:80434740-80434759 | Msa1217910:CDS | 35.0% | |
| CAACGTGAAGGTAAATCAAA+GGG | - | chr8_1:80434741-80434760 | Msa1217910:CDS | 35.0% | |
| TTGCTACTAAAAGCTCTCAT+AGG | + | chr8_1:80435041-80435060 | None:intergenic | 35.0% | |
| ! | ATGAGAGCTTTTAGTAGCAA+AGG | - | chr8_1:80435041-80435060 | Msa1217910:CDS | 35.0% |
| GATGGCATAGCAGATAAATT+TGG | + | chr8_1:80435143-80435162 | None:intergenic | 35.0% | |
| ! | AGATGAAGAAGGTGCAATAT+CGG | + | chr8_1:80434046-80434065 | None:intergenic | 35.0% |
| ATAGAGTTACTACCTCTTCT+TGG | + | chr8_1:80434348-80434367 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTAACTCTA+TGG | - | chr8_1:80434347-80434366 | Msa1217910:CDS | 35.0% | |
| !! | CTTAAGGAAAAGTGTTGTTC+AGG | - | chr8_1:80434513-80434532 | Msa1217910:CDS | 35.0% |
| GTTTCAAGATCTAGATCTGT+TGG | - | chr8_1:80434633-80434652 | Msa1217910:CDS | 35.0% | |
| GAAAGAATTTCAACTGGGTT+TGG | - | chr8_1:80434690-80434709 | Msa1217910:CDS | 35.0% | |
| TCAACGTGAAGGTAAATCAA+AGG | - | chr8_1:80434740-80434759 | Msa1217910:CDS | 35.0% | |
| CAACGTGAAGGTAAATCAAA+GGG | - | chr8_1:80434741-80434760 | Msa1217910:CDS | 35.0% | |
| TTGCTACTAAAAGCTCTCAT+AGG | + | chr8_1:80435041-80435060 | None:intergenic | 35.0% | |
| ! | ATGAGAGCTTTTAGTAGCAA+AGG | - | chr8_1:80435041-80435060 | Msa1217910:CDS | 35.0% |
| GATGGCATAGCAGATAAATT+TGG | + | chr8_1:80435143-80435162 | None:intergenic | 35.0% | |
| GGTGAAGATGATTCCATTGA+TGG | - | chr8_1:80433871-80433890 | Msa1217910:CDS | 40.0% | |
| AATGCATTGCATGCCATCAA+TGG | + | chr8_1:80433887-80433906 | None:intergenic | 40.0% | |
| AAACGGCATGAATAGGAAGA+GGG | + | chr8_1:80433993-80434012 | None:intergenic | 40.0% | |
| GAAGATGAAACGGCATGAAT+AGG | + | chr8_1:80434000-80434019 | None:intergenic | 40.0% | |
| GCAATATCGGATCTGAAAGA+AGG | + | chr8_1:80434033-80434052 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATGGAAGAAGA+AGG | + | chr8_1:80434096-80434115 | None:intergenic | 40.0% |
| ! | TGTTGCTGATACAGTGTTGA+TGG | + | chr8_1:80434106-80434125 | None:intergenic | 40.0% |
| AGAAACAGATGCTGAAACAG+AGG | + | chr8_1:80434271-80434290 | None:intergenic | 40.0% | |
| TCTGTTTCAGCATCTGTTTC+TGG | - | chr8_1:80434270-80434289 | Msa1217910:CDS | 40.0% | |
| GCTCTTGGAATTCAAACTCT+TGG | + | chr8_1:80434466-80434485 | None:intergenic | 40.0% | |
| TACTGCTTCAGCAAAGCTTA+AGG | - | chr8_1:80434497-80434516 | Msa1217910:CDS | 40.0% | |
| ! | TGTTGTTCAGGTTCTTCTCT+AGG | - | chr8_1:80434525-80434544 | Msa1217910:CDS | 40.0% |
| AGATCTAGATCTGTTGGATG+TGG | - | chr8_1:80434639-80434658 | Msa1217910:CDS | 40.0% | |
| AGAGTTGAATCTCAACGTGA+AGG | - | chr8_1:80434729-80434748 | Msa1217910:CDS | 40.0% | |
| !! | GGAGTAGTTGCTAGTTCTAA+CGG | - | chr8_1:80434762-80434781 | Msa1217910:CDS | 40.0% |
| GTACTCTCTCTTTCATGCAA+TGG | + | chr8_1:80434830-80434849 | None:intergenic | 40.0% | |
| !! | GAGAGAGTACTTAGAAGATG+TGG | - | chr8_1:80434840-80434859 | Msa1217910:CDS | 40.0% |
| ! | AGAGTACTTAGAAGATGTGG+AGG | - | chr8_1:80434843-80434862 | Msa1217910:CDS | 40.0% |
| AGATGTGGAGGAATATTCAG+TGG | - | chr8_1:80434855-80434874 | Msa1217910:CDS | 40.0% | |
| GTAACAGTTTCTCAAAACCG+TGG | - | chr8_1:80434984-80435003 | Msa1217910:CDS | 40.0% | |
| GGTGAAGATGATTCCATTGA+TGG | - | chr8_1:80433871-80433890 | Msa1217910:CDS | 40.0% | |
| AATGCATTGCATGCCATCAA+TGG | + | chr8_1:80433887-80433906 | None:intergenic | 40.0% | |
| AAACGGCATGAATAGGAAGA+GGG | + | chr8_1:80433993-80434012 | None:intergenic | 40.0% | |
| GAAGATGAAACGGCATGAAT+AGG | + | chr8_1:80434000-80434019 | None:intergenic | 40.0% | |
| GCAATATCGGATCTGAAAGA+AGG | + | chr8_1:80434033-80434052 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATGGAAGAAGA+AGG | + | chr8_1:80434096-80434115 | None:intergenic | 40.0% |
| ! | TGTTGCTGATACAGTGTTGA+TGG | + | chr8_1:80434106-80434125 | None:intergenic | 40.0% |
| AGAAACAGATGCTGAAACAG+AGG | + | chr8_1:80434271-80434290 | None:intergenic | 40.0% | |
| TCTGTTTCAGCATCTGTTTC+TGG | - | chr8_1:80434270-80434289 | Msa1217910:CDS | 40.0% | |
| GCTCTTGGAATTCAAACTCT+TGG | + | chr8_1:80434466-80434485 | None:intergenic | 40.0% | |
| TACTGCTTCAGCAAAGCTTA+AGG | - | chr8_1:80434497-80434516 | Msa1217910:CDS | 40.0% | |
| ! | TGTTGTTCAGGTTCTTCTCT+AGG | - | chr8_1:80434525-80434544 | Msa1217910:CDS | 40.0% |
| AGATCTAGATCTGTTGGATG+TGG | - | chr8_1:80434639-80434658 | Msa1217910:CDS | 40.0% | |
| AGAGTTGAATCTCAACGTGA+AGG | - | chr8_1:80434729-80434748 | Msa1217910:CDS | 40.0% | |
| !! | GGAGTAGTTGCTAGTTCTAA+CGG | - | chr8_1:80434762-80434781 | Msa1217910:CDS | 40.0% |
| GTACTCTCTCTTTCATGCAA+TGG | + | chr8_1:80434830-80434849 | None:intergenic | 40.0% | |
| !! | GAGAGAGTACTTAGAAGATG+TGG | - | chr8_1:80434840-80434859 | Msa1217910:CDS | 40.0% |
| ! | AGAGTACTTAGAAGATGTGG+AGG | - | chr8_1:80434843-80434862 | Msa1217910:CDS | 40.0% |
| AGATGTGGAGGAATATTCAG+TGG | - | chr8_1:80434855-80434874 | Msa1217910:CDS | 40.0% | |
| GTAACAGTTTCTCAAAACCG+TGG | - | chr8_1:80434984-80435003 | Msa1217910:CDS | 40.0% | |
| ATGGAAGCTATGAAAGGAGG+TGG | - | chr8_1:80433832-80433851 | Msa1217910:CDS | 45.0% | |
| GGAGGTGGAAGAGTTAACAT+TGG | - | chr8_1:80433847-80433866 | Msa1217910:CDS | 45.0% | |
| GGTGGAAGAGTTAACATTGG+TGG | - | chr8_1:80433850-80433869 | Msa1217910:CDS | 45.0% | |
| CATCCTTACAGAAACAACCC+TGG | - | chr8_1:80433910-80433929 | Msa1217910:CDS | 45.0% | |
| CTTACAGAAACAACCCTGGT+GGG | - | chr8_1:80433914-80433933 | Msa1217910:CDS | 45.0% | |
| ! | AAAAAGCACAGATCCCACCA+GGG | + | chr8_1:80433930-80433949 | None:intergenic | 45.0% |
| GAAACGGCATGAATAGGAAG+AGG | + | chr8_1:80433994-80434013 | None:intergenic | 45.0% | |
| GTGGAAGTGGAAGATGAAGA+AGG | + | chr8_1:80434057-80434076 | None:intergenic | 45.0% | |
| ! | ACAATGACGAGTAGTGGAAG+TGG | + | chr8_1:80434070-80434089 | None:intergenic | 45.0% |
| ! | GTGTTGATGGAAGAAGAAGG+AGG | + | chr8_1:80434093-80434112 | None:intergenic | 45.0% |
| TCAACTGCAACACCAAGAAG+AGG | - | chr8_1:80434333-80434352 | Msa1217910:CDS | 45.0% | |
| ! | GTGTTGTTGCTGCTGCTATT+AGG | + | chr8_1:80434594-80434613 | None:intergenic | 45.0% |
| AATAGCAGCAGCAACAACAC+AGG | - | chr8_1:80434594-80434613 | Msa1217910:CDS | 45.0% | |
| TCTCTTTCATGCAATGGTGG+TGG | + | chr8_1:80434824-80434843 | None:intergenic | 45.0% | |
| CTCTCTCTTTCATGCAATGG+TGG | + | chr8_1:80434827-80434846 | None:intergenic | 45.0% | |
| ! | TCTGCTGATGATGCTGTGAA+TGG | - | chr8_1:80434942-80434961 | Msa1217910:CDS | 45.0% |
| GTGAATGGAGGAGGAAAACA+AGG | - | chr8_1:80434957-80434976 | Msa1217910:CDS | 45.0% | |
| ACAGTTTCTCAAAACCGTGG+TGG | - | chr8_1:80434987-80435006 | Msa1217910:CDS | 45.0% | |
| ! | AAAACCGTGGTGGAAAGAGT+TGG | - | chr8_1:80434997-80435016 | Msa1217910:CDS | 45.0% |
| ! | AAACCGTGGTGGAAAGAGTT+GGG | - | chr8_1:80434998-80435017 | Msa1217910:CDS | 45.0% |
| CCTCTAGCAGAAAGCAAAGA+TGG | + | chr8_1:80435161-80435180 | None:intergenic | 45.0% | |
| CCATCTTTGCTTTCTGCTAG+AGG | - | chr8_1:80435158-80435177 | Msa1217910:CDS | 45.0% | |
| ATGGAAGCTATGAAAGGAGG+TGG | - | chr8_1:80433832-80433851 | Msa1217910:CDS | 45.0% | |
| GGAGGTGGAAGAGTTAACAT+TGG | - | chr8_1:80433847-80433866 | Msa1217910:CDS | 45.0% | |
| GGTGGAAGAGTTAACATTGG+TGG | - | chr8_1:80433850-80433869 | Msa1217910:CDS | 45.0% | |
| CATCCTTACAGAAACAACCC+TGG | - | chr8_1:80433910-80433929 | Msa1217910:CDS | 45.0% | |
| CTTACAGAAACAACCCTGGT+GGG | - | chr8_1:80433914-80433933 | Msa1217910:CDS | 45.0% | |
| ! | AAAAAGCACAGATCCCACCA+GGG | + | chr8_1:80433930-80433949 | None:intergenic | 45.0% |
| GAAACGGCATGAATAGGAAG+AGG | + | chr8_1:80433994-80434013 | None:intergenic | 45.0% | |
| GTGGAAGTGGAAGATGAAGA+AGG | + | chr8_1:80434057-80434076 | None:intergenic | 45.0% | |
| ! | ACAATGACGAGTAGTGGAAG+TGG | + | chr8_1:80434070-80434089 | None:intergenic | 45.0% |
| ! | GTGTTGATGGAAGAAGAAGG+AGG | + | chr8_1:80434093-80434112 | None:intergenic | 45.0% |
| TCAACTGCAACACCAAGAAG+AGG | - | chr8_1:80434333-80434352 | Msa1217910:CDS | 45.0% | |
| ! | GTGTTGTTGCTGCTGCTATT+AGG | + | chr8_1:80434594-80434613 | None:intergenic | 45.0% |
| AATAGCAGCAGCAACAACAC+AGG | - | chr8_1:80434594-80434613 | Msa1217910:CDS | 45.0% | |
| TCTCTTTCATGCAATGGTGG+TGG | + | chr8_1:80434824-80434843 | None:intergenic | 45.0% | |
| CTCTCTCTTTCATGCAATGG+TGG | + | chr8_1:80434827-80434846 | None:intergenic | 45.0% | |
| ! | TCTGCTGATGATGCTGTGAA+TGG | - | chr8_1:80434942-80434961 | Msa1217910:CDS | 45.0% |
| GTGAATGGAGGAGGAAAACA+AGG | - | chr8_1:80434957-80434976 | Msa1217910:CDS | 45.0% | |
| ACAGTTTCTCAAAACCGTGG+TGG | - | chr8_1:80434987-80435006 | Msa1217910:CDS | 45.0% | |
| ! | AAAACCGTGGTGGAAAGAGT+TGG | - | chr8_1:80434997-80435016 | Msa1217910:CDS | 45.0% |
| ! | AAACCGTGGTGGAAAGAGTT+GGG | - | chr8_1:80434998-80435017 | Msa1217910:CDS | 45.0% |
| CCTCTAGCAGAAAGCAAAGA+TGG | + | chr8_1:80435161-80435180 | None:intergenic | 45.0% | |
| CCATCTTTGCTTTCTGCTAG+AGG | - | chr8_1:80435158-80435177 | Msa1217910:CDS | 45.0% | |
| !! | CCACCAGGGTTGTTTCTGTA+AGG | + | chr8_1:80433916-80433935 | None:intergenic | 50.0% |
| CCTTACAGAAACAACCCTGG+TGG | - | chr8_1:80433913-80433932 | Msa1217910:CDS | 50.0% | |
| ! | CAAAAAGCACAGATCCCACC+AGG | + | chr8_1:80433931-80433950 | None:intergenic | 50.0% |
| AGGAGGACAATGACGAGTAG+TGG | + | chr8_1:80434076-80434095 | None:intergenic | 50.0% | |
| TGTGGTAGCAGAAGCTTCTC+TGG | - | chr8_1:80434657-80434676 | Msa1217910:CDS | 50.0% | |
| !! | CTTTCATGCAATGGTGGTGG+TGG | + | chr8_1:80434821-80434840 | None:intergenic | 50.0% |
| ! | GCTGATGATGCTGTGAATGG+AGG | - | chr8_1:80434945-80434964 | Msa1217910:CDS | 50.0% |
| GATGATGCTGTGAATGGAGG+AGG | - | chr8_1:80434948-80434967 | Msa1217910:CDS | 50.0% | |
| ! | AACCGTGGTGGAAAGAGTTG+GGG | - | chr8_1:80434999-80435018 | Msa1217910:CDS | 50.0% |
| AACCCCAACTCTTTCCACCA+CGG | + | chr8_1:80435004-80435023 | None:intergenic | 50.0% | |
| TGGTGGAAAGAGTTGGGGTT+GGG | - | chr8_1:80435004-80435023 | Msa1217910:CDS | 50.0% | |
| !! | CCACCAGGGTTGTTTCTGTA+AGG | + | chr8_1:80433916-80433935 | None:intergenic | 50.0% |
| CCTTACAGAAACAACCCTGG+TGG | - | chr8_1:80433913-80433932 | Msa1217910:CDS | 50.0% | |
| ! | CAAAAAGCACAGATCCCACC+AGG | + | chr8_1:80433931-80433950 | None:intergenic | 50.0% |
| AGGAGGACAATGACGAGTAG+TGG | + | chr8_1:80434076-80434095 | None:intergenic | 50.0% | |
| TGTGGTAGCAGAAGCTTCTC+TGG | - | chr8_1:80434657-80434676 | Msa1217910:CDS | 50.0% | |
| !! | CTTTCATGCAATGGTGGTGG+TGG | + | chr8_1:80434821-80434840 | None:intergenic | 50.0% |
| ! | GCTGATGATGCTGTGAATGG+AGG | - | chr8_1:80434945-80434964 | Msa1217910:CDS | 50.0% |
| GATGATGCTGTGAATGGAGG+AGG | - | chr8_1:80434948-80434967 | Msa1217910:CDS | 50.0% | |
| ! | AACCGTGGTGGAAAGAGTTG+GGG | - | chr8_1:80434999-80435018 | Msa1217910:CDS | 50.0% |
| AACCCCAACTCTTTCCACCA+CGG | + | chr8_1:80435004-80435023 | None:intergenic | 50.0% | |
| TGGTGGAAAGAGTTGGGGTT+GGG | - | chr8_1:80435004-80435023 | Msa1217910:CDS | 50.0% | |
| !! | TCATGCAATGGTGGTGGTGG+TGG | + | chr8_1:80434818-80434837 | None:intergenic | 55.0% |
| ! | GTGGTGGAAAGAGTTGGGGT+TGG | - | chr8_1:80435003-80435022 | Msa1217910:CDS | 55.0% |
| !! | TCATGCAATGGTGGTGGTGG+TGG | + | chr8_1:80434818-80434837 | None:intergenic | 55.0% |
| ! | GTGGTGGAAAGAGTTGGGGT+TGG | - | chr8_1:80435003-80435022 | Msa1217910:CDS | 55.0% |
| !! | GGTGGTGGTGGTCTTGAGCA+CGG | + | chr8_1:80434803-80434822 | None:intergenic | 60.0% |
| !! | TGCAATGGTGGTGGTGGTGG+TGG | + | chr8_1:80434815-80434834 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTCTTGAGCA+CGG | + | chr8_1:80434803-80434822 | None:intergenic | 60.0% |
| !! | TGCAATGGTGGTGGTGGTGG+TGG | + | chr8_1:80434815-80434834 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 80433832 | 80435184 | 80433832 | ID=Msa1217910;Name=Msa1217910 |
| chr8_1 | mRNA | 80433832 | 80435184 | 80433832 | ID=Msa1217910-mRNA-1;Parent=Msa1217910;Name=Msa1217910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|450 |
| chr8_1 | exon | 80433832 | 80435184 | 80433832 | ID=Msa1217910-mRNA-1:exon:28196;Parent=Msa1217910-mRNA-1 |
| chr8_1 | CDS | 80433832 | 80435184 | 80433832 | ID=Msa1217910-mRNA-1:cds;Parent=Msa1217910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
