AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330130 MtrunA17_Chr4g0058051 99.509 407 2 0 1 407 1 407 0.0 843
Msa1330130 MtrunA17_Chr3g0116521 87.224 407 51 1 1 407 1 406 0.0 690
Msa1330130 MtrunA17_Chr6g0458201 79.052 401 83 1 7 407 5 404 0.0 676
Msa1330130 MtrunA17_Chr3g0123321 79.177 389 77 3 19 407 19 403 0.0 603
Msa1330130 MtrunA17_Chr7g0237761 69.287 407 121 2 1 407 42 444 0.0 592
Msa1330130 MtrunA17_Chr1g0169731 72.680 388 105 1 20 407 64 450 0.0 588
Msa1330130 MtrunA17_Chr3g0123331 68.250 400 125 2 9 407 8 406 0.0 558
Msa1330130 MtrunA17_Chr1g0210321 64.800 375 128 2 29 400 35 408 0.0 524
Msa1330130 MtrunA17_Chr1g0180381 61.461 397 143 3 14 403 22 415 0.0 516
Msa1330130 MtrunA17_Chr7g0264891 63.918 388 136 3 14 400 23 407 1.47e-179 508
Msa1330130 MtrunA17_Chr4g0060211 58.140 387 152 3 28 407 51 434 3.96e-167 475
Msa1330130 MtrunA17_Chr5g0416061 57.181 376 161 0 32 407 74 449 6.48e-158 452
Msa1330130 MtrunA17_Chr4g0075231 61.429 350 132 2 58 407 39 385 9.10e-158 449
Msa1330130 MtrunA17_Chr8g0362561 58.333 372 144 2 47 407 84 455 4.36e-157 451
Msa1330130 MtrunA17_Chr2g0288921 52.267 419 178 5 1 407 1 409 4.69e-152 436
Msa1330130 MtrunA17_Chr5g0416041 56.316 380 162 1 32 407 70 449 5.93e-151 435
Msa1330130 MtrunA17_Chr6g0452861 57.627 354 150 0 54 407 100 453 1.08e-149 432
Msa1330130 MtrunA17_Chr7g0216581 57.345 354 151 0 54 407 98 451 1.70e-143 416
Msa1330130 MtrunA17_Chr8g0373761 44.225 355 189 7 58 407 42 392 2.87e-96 293
Msa1330130 MtrunA17_Chr8g0373721 43.785 354 192 6 58 407 42 392 6.04e-96 292
Msa1330130 MtrunA17_Chr3g0089181 44.663 356 186 9 58 407 23 373 7.73e-95 289
Msa1330130 MtrunA17_Chr8g0373731 44.507 355 188 7 58 407 42 392 1.91e-89 276
Msa1330130 MtrunA17_Chr8g0373701 42.817 355 194 8 58 407 97 447 8.07e-89 276
Msa1330130 MtrunA17_Chr5g0403481 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1330130 MtrunA17_Chr5g0403461 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1330130 MtrunA17_Chr5g0403491 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1330130 MtrunA17_Chr5g0403391 43.662 355 191 7 58 407 41 391 1.06e-86 268
Msa1330130 MtrunA17_Chr5g0414541 43.662 355 191 7 58 407 41 391 1.73e-86 268
Msa1330130 MtrunA17_Chr5g0403411 43.380 355 192 7 58 407 41 391 1.15e-82 258
Msa1330130 MtrunA17_Chr4g0031851 43.269 312 170 6 97 405 28 335 6.44e-80 250
Msa1330130 MtrunA17_Chr3g0113551 60.894 179 54 2 152 328 122 286 8.74e-71 224
Msa1330130 MtrunA17_Chr1g0183941 42.537 268 151 3 133 399 1 266 4.96e-68 216
Msa1330130 MtrunA17_Chr2g0288901 51.282 156 72 2 252 407 5 156 1.72e-50 167
Msa1330130 MtrunA17_Chr1g0212931 37.329 292 157 7 71 361 9 275 2.91e-46 162
Msa1330130 MtrunA17_Chr2g0288911 59.836 122 48 1 133 253 1 122 4.80e-44 149
Msa1330130 MtrunA17_Chr1g0182021 36.364 286 156 6 77 361 64 324 5.44e-39 144
Msa1330130 MtrunA17_Chr6g0481851 47.436 156 80 2 208 363 71 224 1.38e-37 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330130 AT5G63180.1 82.045 401 71 1 8 407 32 432 0.0 681
Msa1330130 AT1G67750.1 83.033 389 63 2 19 407 23 408 0.0 662
Msa1330130 AT4G24780.2 80.685 409 76 3 1 407 1 408 0.0 657
Msa1330130 AT4G24780.1 80.685 409 76 3 1 407 1 408 0.0 657
Msa1330130 AT4G13710.1 73.698 384 96 2 28 407 88 470 0.0 621
Msa1330130 AT3G27400.2 73.188 414 102 4 1 407 5 416 0.0 620
Msa1330130 AT3G27400.1 73.188 414 102 4 1 407 1 412 0.0 620
Msa1330130 AT4G13710.2 73.698 384 96 2 28 407 69 451 0.0 619
Msa1330130 AT3G07010.1 72.513 382 104 1 26 407 36 416 0.0 585
Msa1330130 AT1G04680.1 69.471 416 109 4 9 407 15 429 0.0 585
Msa1330130 AT3G07010.2 73.210 377 100 1 31 407 8 383 0.0 580
Msa1330130 AT3G24670.1 70.157 382 113 1 26 407 60 440 0.0 574
Msa1330130 AT3G24230.1 67.263 391 122 2 21 407 63 451 0.0 563
Msa1330130 AT5G48900.1 72.775 382 103 1 26 407 37 417 0.0 561
Msa1330130 AT4G13210.2 71.540 383 107 2 26 407 57 438 0.0 560
Msa1330130 AT4G13210.1 71.540 383 107 2 26 407 20 401 0.0 558
Msa1330130 AT3G53190.1 63.119 404 137 3 8 400 13 415 0.0 524
Msa1330130 AT5G04310.3 61.750 400 137 3 14 400 40 436 2.83e-176 500
Msa1330130 AT5G04310.1 61.386 404 140 3 14 404 40 440 1.14e-174 498
Msa1330130 AT5G04310.2 61.386 404 140 3 14 404 40 440 1.14e-174 498
Msa1330130 AT3G54920.1 61.499 387 124 5 29 400 37 413 1.86e-171 489
Msa1330130 AT5G55720.1 57.393 399 155 6 11 407 7 392 1.80e-165 470
Msa1330130 AT1G11920.1 62.000 350 131 2 58 407 37 384 5.70e-159 453
Msa1330130 AT1G14420.1 56.667 360 151 1 53 407 100 459 1.52e-155 447
Msa1330130 AT2G02720.1 57.983 357 145 1 56 407 99 455 2.14e-153 441
Msa1330130 AT4G22090.1 59.429 350 139 2 58 407 47 393 8.29e-153 437
Msa1330130 AT4G22080.1 58.857 350 141 2 58 407 47 393 9.88e-152 435
Msa1330130 AT5G15110.1 57.183 355 151 1 54 407 118 472 2.87e-149 432
Msa1330130 AT3G01270.1 56.338 355 154 1 54 407 121 475 5.63e-148 428
Msa1330130 AT1G30350.1 53.234 402 152 8 7 407 2 368 1.31e-138 400
Msa1330130 AT5G09280.1 48.062 258 131 3 91 347 6 261 8.16e-77 240
Msa1330130 AT3G55140.1 38.127 299 157 8 77 374 16 287 1.76e-48 168
Msa1330130 AT3G09540.1 37.801 291 149 9 75 361 61 323 1.06e-42 154
Msa1330130 AT3G09540.3 37.457 291 146 10 75 361 61 319 1.62e-40 148
Msa1330130 AT3G55140.2 37.121 264 143 7 112 374 22 263 3.53e-40 145
Msa1330130 AT3G09540.2 35.772 246 132 6 75 319 61 281 2.26e-35 132

Find 128 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGTTGTTAATCTCTT+TGG 0.204884 8_4:+49212738 Msa1330130:three_prime_UTR
AATTAATTAATTATAGAATA+TGG 0.215022 8_4:+49212592 Msa1330130:three_prime_UTR
GTTTGGTTTGGTCATTTCTT+TGG 0.215949 8_4:+49212614 Msa1330130:three_prime_UTR
CATCCTTTCCATTCACCTTC+TGG 0.229620 8_4:-49212277 None:intergenic
GGTTGTAGTTGTCATGTTTA+AGG 0.241272 8_4:-49210579 None:intergenic
GAGATCAGAAGGGGATTTAT+TGG 0.252599 8_4:+49212306 Msa1330130:CDS
GAAGGGGATTTATTGGTAAA+TGG 0.271139 8_4:+49212313 Msa1330130:CDS
CCATGATAAAGTTATGCTTT+TGG 0.272991 8_4:+49211540 Msa1330130:CDS
ACTTCTTGTGTAACCAAATC+AGG 0.275225 8_4:-49210671 None:intergenic
AGGGACTCCCCAGGACATTA+TGG 0.275653 8_4:+49211364 Msa1330130:CDS
ATCTACGTCGTAACAGATTC+TGG 0.307127 8_4:+49211079 Msa1330130:CDS
AAACGAAGGGTACCGGGTTT+TGG 0.308930 8_4:-49211121 None:intergenic
AATTCATTCAAGACCATTGA+TGG 0.310571 8_4:+49211223 Msa1330130:CDS
AAGGAAGAAGAGTGAGGAAT+TGG 0.316047 8_4:-49210600 None:intergenic
TGATTCAAGACGAACCATTA+TGG 0.319794 8_4:+49211149 Msa1330130:CDS
AGACTAGCAGATTGTGCAAT+TGG 0.327645 8_4:+49211019 Msa1330130:CDS
AAAATTATTGATATTGGTAT+TGG 0.335285 8_4:+49212822 Msa1330130:three_prime_UTR
TGGTTACACAAGAAGTTAAC+AGG 0.337713 8_4:+49210678 Msa1330130:CDS
ACCTCTTCAAGACCCTGATT+TGG 0.354799 8_4:+49210658 Msa1330130:CDS
CACCTCCAACAATCATCAAT+TGG 0.361226 8_4:-49210968 None:intergenic
GGTGATGGTGTTTCAATCTT+TGG 0.361315 8_4:+49211406 Msa1330130:CDS
TCTGTTTCCTTGGCTATTGA+TGG 0.363689 8_4:-49212022 None:intergenic
CACTGGGAAATGTATGCTAT+TGG 0.369377 8_4:+49211982 Msa1330130:CDS
TCTTTGGTGGAAGTCATGTT+TGG 0.372613 8_4:+49211422 Msa1330130:CDS
CTTTGGTGGAAGTCATGTTT+GGG 0.384354 8_4:+49211423 Msa1330130:CDS
CTCTTTAGCTAGGAGAAACT+TGG 0.387502 8_4:+49210919 Msa1330130:CDS
GTCATGTTTAAGGTTGTAAA+GGG 0.399072 8_4:-49210569 None:intergenic
CTTGCAAAGATTATCCATAA+TGG 0.404999 8_4:-49211163 None:intergenic
TTATAGAATATGGTTTGGTT+TGG 0.407768 8_4:+49212602 Msa1330130:three_prime_UTR
GGTTTGATTGATGCTATTCA+TGG 0.410643 8_4:+49211478 Msa1330130:CDS
GTTGGAGGTGTGACCCAAAC+TGG 0.411442 8_4:+49210981 Msa1330130:CDS
GGAGCTAGTGTTCACATTGC+TGG 0.411776 8_4:+49211250 Msa1330130:CDS
CTCTTTGCTGAATCTGTCAT+CGG 0.413264 8_4:-49212055 None:intergenic
GTGAATGGAAAGGATGGAAT+TGG 0.414525 8_4:+49212284 Msa1330130:CDS
ATTAATTATAGAATATGGTT+TGG 0.414962 8_4:+49212597 Msa1330130:three_prime_UTR
TGTCATGTTTAAGGTTGTAA+AGG 0.430838 8_4:-49210570 None:intergenic
TTAATTCAAGGGAGGGAAGT+TGG 0.436601 8_4:+49212524 Msa1330130:three_prime_UTR
TTCTCCACCCATAATGTCCT+GGG 0.438364 8_4:-49211372 None:intergenic
TCTTTGCTGAATCTGTCATC+GGG 0.444567 8_4:-49212054 None:intergenic
GACTAGCAGATTGTGCAATT+GGG 0.446577 8_4:+49211020 Msa1330130:CDS
ACGACTGGTGCTGGTGTACT+TGG 0.447068 8_4:+49212433 Msa1330130:CDS
GTTCTCCACCCATAATGTCC+TGG 0.462926 8_4:-49211373 None:intergenic
GCAGATTGTGCAATTGGGTT+CGG 0.464118 8_4:+49211025 Msa1330130:CDS
GGGCTACAAATCTGTTTCCT+TGG 0.465553 8_4:-49212032 None:intergenic
GGGACTCCCCAGGACATTAT+GGG 0.466397 8_4:+49211365 Msa1330130:CDS
CAGGCTGGTCAATTAATTCA+AGG 0.466623 8_4:+49212512 Msa1330130:three_prime_UTR
GAAACCCAATTGATGATTGT+TGG 0.470361 8_4:+49210963 Msa1330130:CDS
TTTCCTTGGCTATTGATGGT+AGG 0.471059 8_4:-49212018 None:intergenic
GTTTGGTCATTTCTTTGGCT+AGG 0.479126 8_4:+49212619 Msa1330130:three_prime_UTR
AGATTCTGGTGACGACGATC+CGG 0.480462 8_4:+49211093 Msa1330130:CDS
ACCTCCAACAATCATCAATT+GGG 0.481818 8_4:-49210967 None:intergenic
CACGGCGAAACGAAGGGTAC+CGG 0.485957 8_4:-49211128 None:intergenic
TCTTTGTCTAACTGTAATGA+TGG 0.487158 8_4:+49211457 Msa1330130:CDS
GGTGTACTTGGTTGTAAGAA+AGG 0.495383 8_4:+49212445 Msa1330130:CDS
GATGCTCCTCCTGCTCCTGA+TGG 0.498131 8_4:-49212349 None:intergenic
TAAACAATGACTATACTCAC+TGG 0.505124 8_4:+49211965 Msa1330130:CDS
AGGATGCGCCAGAAGGTGAA+TGG 0.512208 8_4:+49212269 Msa1330130:CDS
TTCAAGACCATTGATGGAAG+AGG 0.512334 8_4:+49211229 Msa1330130:CDS
GGGTACCTCTCATGTGGAAG+TGG 0.513126 8_4:+49210941 Msa1330130:CDS
GAGACAGTTGTTTGCTCGAG+GGG 0.513260 8_4:-49212487 None:intergenic
CAGAGACAGTTGTTTGCTCG+AGG 0.519988 8_4:-49212489 None:intergenic
ACTAGCTCCTCTTCCATCAA+TGG 0.520452 8_4:-49211236 None:intergenic
GGATGGAATTGGAGATCAGA+AGG 0.522837 8_4:+49212295 Msa1330130:CDS
AAATCAATGGCTCTTTAGCT+AGG 0.524502 8_4:+49210909 Msa1330130:CDS
TGGGAAATGTATGCTATTGG+AGG 0.524720 8_4:+49211985 Msa1330130:CDS
GAGCAAACAACTGTCTCTGC+AGG 0.526167 8_4:+49212493 Msa1330130:three_prime_UTR
CCAAAAGCATAACTTTATCA+TGG 0.527550 8_4:-49211540 None:intergenic
CATATACATGATTGTAAACA+AGG 0.532097 8_4:+49211325 Msa1330130:CDS
GCAAGACCATCTTCTCTAGT+TGG 0.537015 8_4:+49212403 Msa1330130:CDS
GTTTGATTGATGCTATTCAT+GGG 0.537333 8_4:+49211479 Msa1330130:CDS
CCAAAGAGATTAACAACTAG+AGG 0.538229 8_4:-49212738 None:intergenic
TAATGGTTCGTCTTGAATCA+CGG 0.543141 8_4:-49211146 None:intergenic
CTTGAATCACGGCGAAACGA+AGG 0.545050 8_4:-49211135 None:intergenic
TCTTTAGCTAGGAGAAACTT+GGG 0.545580 8_4:+49210920 Msa1330130:CDS
ATTGTACCAACTAGAGAAGA+TGG 0.548453 8_4:-49212409 None:intergenic
AGAGACAGTTGTTTGCTCGA+GGG 0.550545 8_4:-49212488 None:intergenic
GGGTTCGGTAAGAATGCCAT+TGG 0.551684 8_4:+49211040 Msa1330130:CDS
AGAGAGAAGGAAGAAGAGTG+AGG 0.555094 8_4:-49210606 None:intergenic
ACATACTGAATTGTAATACA+TGG 0.557374 8_4:-49211277 None:intergenic
AAACAACTGTCTCTGCAGGC+TGG 0.561868 8_4:+49212497 Msa1330130:three_prime_UTR
GTTAGAGATGGTAATTGCAG+TGG 0.564291 8_4:-49211503 None:intergenic
CTTCTTGTGTAACCAAATCA+GGG 0.566684 8_4:-49210670 None:intergenic
TTCGGTAAGAATGCCATTGG+TGG 0.570130 8_4:+49211043 Msa1330130:CDS
GTGACTAATGTTATAATACA+TGG 0.574654 8_4:+49211298 Msa1330130:CDS
TGGTGGAAGTCATGTTTGGG+TGG 0.575416 8_4:+49211426 Msa1330130:CDS
TACATGATTGTAAACAAGGT+GGG 0.575537 8_4:+49211329 Msa1330130:CDS
AGTCATATAATTGTTAGAGA+TGG 0.575991 8_4:-49211515 None:intergenic
TTGAATCACGGCGAAACGAA+GGG 0.577749 8_4:-49211134 None:intergenic
GATGGTGTTTCAATCTTTGG+TGG 0.582213 8_4:+49211409 Msa1330130:CDS
AGGTGGGAATGCCATGGTGA+GGG 0.586721 8_4:+49211345 Msa1330130:CDS
ACCTTGGCATTCTTTGAACA+AGG 0.589280 8_4:-49211633 None:intergenic
GGTTTCCACTTCCACATGAG+AGG 0.590368 8_4:-49210946 None:intergenic
AAACAATGACTATACTCACT+GGG 0.594536 8_4:+49211966 Msa1330130:CDS
GGTACAATAACGACTGGTGC+TGG 0.596299 8_4:+49212424 Msa1330130:CDS
GATGGAATTGGAGATCAGAA+GGG 0.598901 8_4:+49212296 Msa1330130:CDS
CGATGACAGATTCAGCAAAG+AGG 0.599514 8_4:+49212056 Msa1330130:CDS
ATGGTTTGCAGGTGTAGGCA+TGG 0.600072 8_4:+49211928 Msa1330130:intron
CTAGTTGGTACAATAACGAC+TGG 0.602596 8_4:+49212418 Msa1330130:CDS
GCTAGTGTTCACATTGCTGG+TGG 0.603604 8_4:+49211253 Msa1330130:CDS
AATCCTACCATCAATAGCCA+AGG 0.603716 8_4:+49212015 Msa1330130:CDS
ATGGAATTGGAGATCAGAAG+GGG 0.604249 8_4:+49212297 Msa1330130:CDS
TTTACACCATCAGGAGCAGG+AGG 0.609904 8_4:+49212343 Msa1330130:CDS
CAGAAGGTGAATGGAAAGGA+TGG 0.613208 8_4:+49212278 Msa1330130:CDS
ACCCAATTGATGATTGTTGG+AGG 0.614236 8_4:+49210966 Msa1330130:CDS
TGGTCAATTAATTCAAGGGA+GGG 0.614509 8_4:+49212517 Msa1330130:three_prime_UTR
AGGCTGGTCAATTAATTCAA+GGG 0.615208 8_4:+49212513 Msa1330130:three_prime_UTR
AGGGTCTTGAAGAGGTGAAG+AGG 0.616881 8_4:-49210651 None:intergenic
ACCAAATCAGGGTCTTGAAG+AGG 0.622034 8_4:-49210659 None:intergenic
AACTTGGGGTACCTCTCATG+TGG 0.622347 8_4:+49210935 Msa1330130:CDS
CTTTGCTGAATCTGTCATCG+GGG 0.624770 8_4:-49212053 None:intergenic
GCGCCAGAAGGTGAATGGAA+AGG 0.624970 8_4:+49212274 Msa1330130:CDS
AAGCACGAGGATGCGCCAGA+AGG 0.627072 8_4:+49212262 Msa1330130:CDS
AAGGTGGGAATGCCATGGTG+AGG 0.634971 8_4:+49211344 Msa1330130:CDS
ATTGTAGGAAGAAAGTAACA+TGG 0.636622 8_4:-49212659 None:intergenic
CTGGTCAATTAATTCAAGGG+AGG 0.645239 8_4:+49212516 Msa1330130:three_prime_UTR
GATCCGGTGACACCAAAACC+CGG 0.648661 8_4:+49211109 Msa1330130:CDS
AGAACAGTATCAGACGGTGA+TGG 0.653341 8_4:+49211391 Msa1330130:CDS
TCTCCACCCATAATGTCCTG+GGG 0.654071 8_4:-49211371 None:intergenic
GATAATCTTTGCAAGAGACA+TGG 0.658003 8_4:+49211171 Msa1330130:CDS
ACTCCCCAGGACATTATGGG+TGG 0.660040 8_4:+49211368 Msa1330130:CDS
TTGGAGGTGTGACCCAAACT+GGG 0.660140 8_4:+49210982 Msa1330130:CDS
TCCTGGGGAGTCCCTCACCA+TGG 0.666445 8_4:-49211356 None:intergenic
TTTGCTGAATCTGTCATCGG+GGG 0.676835 8_4:-49212052 None:intergenic
GGGTGGAGAACAGTATCAGA+CGG 0.677252 8_4:+49211385 Msa1330130:CDS
ATACATGATTGTAAACAAGG+TGG 0.686460 8_4:+49211328 Msa1330130:CDS
CTTTAGCTAGGAGAAACTTG+GGG 0.690368 8_4:+49210921 Msa1330130:CDS
TAAACAAGGTGGGAATGCCA+TGG 0.700137 8_4:+49211339 Msa1330130:CDS
GCCTTGTTCAAAGAATGCCA+AGG 0.701595 8_4:+49211632 Msa1330130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAAGAAAAAATAATA+GGG - chr8_4:49210736-49210755 None:intergenic 10.0%
!!! TTTTTACAAGAAAAAATAAT+AGG - chr8_4:49210737-49210756 None:intergenic 10.0%
!! AAAAAAAGAAAAAAGATAAA+CGG + chr8_4:49211738-49211757 Msa1330130:intron 10.0%
!! TATTGAAAAATTATTGATAT+TGG + chr8_4:49212816-49212835 Msa1330130:three_prime_UTR 10.0%
!!! TTTTACAAGAAAAAATAATA+GGG - chr8_4:49210736-49210755 None:intergenic 10.0%
!!! TTTTTACAAGAAAAAATAAT+AGG - chr8_4:49210737-49210756 None:intergenic 10.0%
!! AAAAAAAGAAAAAAGATAAA+CGG + chr8_4:49211738-49211757 Msa1330130:intron 10.0%
!! TATTGAAAAATTATTGATAT+TGG + chr8_4:49212816-49212835 Msa1330130:three_prime_UTR 10.0%
!!! TTTTTGTTTATAATACTAGA+GGG - chr8_4:49210816-49210835 None:intergenic 15.0%
!!! ATTTTTGTTTATAATACTAG+AGG - chr8_4:49210817-49210836 None:intergenic 15.0%
!!! GTTTATCTTTTTTCTTTTTT+TGG - chr8_4:49211739-49211758 None:intergenic 15.0%
!! AAAAAAGAAAAAAGATAAAC+GGG + chr8_4:49211739-49211758 Msa1330130:intron 15.0%
!! ATTAATTATAGAATATGGTT+TGG + chr8_4:49212597-49212616 Msa1330130:three_prime_UTR 15.0%
!! ATGTCAAAAATAAAAATTGT+AGG - chr8_4:49212677-49212696 None:intergenic 15.0%
!! AAAATTATTGATATTGGTAT+TGG + chr8_4:49212822-49212841 Msa1330130:three_prime_UTR 15.0%
!!! TTTTTGTTTATAATACTAGA+GGG - chr8_4:49210816-49210835 None:intergenic 15.0%
!!! ATTTTTGTTTATAATACTAG+AGG - chr8_4:49210817-49210836 None:intergenic 15.0%
!!! GTTTATCTTTTTTCTTTTTT+TGG - chr8_4:49211739-49211758 None:intergenic 15.0%
!! AAAAAAGAAAAAAGATAAAC+GGG + chr8_4:49211739-49211758 Msa1330130:intron 15.0%
!! ATTAATTATAGAATATGGTT+TGG + chr8_4:49212597-49212616 Msa1330130:three_prime_UTR 15.0%
!! ATGTCAAAAATAAAAATTGT+AGG - chr8_4:49212677-49212696 None:intergenic 15.0%
!! ACAAAAATGTACATGTATTT+AGG + chr8_4:49210829-49210848 Msa1330130:intron 20.0%
!!! CTTTTTTCTTTTTTTGGTAA+TGG - chr8_4:49211733-49211752 None:intergenic 20.0%
!! AATTAGAAAAACATATGTGA+TGG + chr8_4:49211909-49211928 Msa1330130:intron 20.0%
!!! AGACGTTGAATTATTATTTT+AGG + chr8_4:49212234-49212253 Msa1330130:intron 20.0%
!! ACAAAAATGTACATGTATTT+AGG + chr8_4:49210829-49210848 Msa1330130:intron 20.0%
!!! CTTTTTTCTTTTTTTGGTAA+TGG - chr8_4:49211733-49211752 None:intergenic 20.0%
!! AATTAGAAAAACATATGTGA+TGG + chr8_4:49211909-49211928 Msa1330130:intron 20.0%
!!! AGACGTTGAATTATTATTTT+AGG + chr8_4:49212234-49212253 Msa1330130:intron 20.0%
! ATTTGTATGTTAAGCTAGTT+TGG - chr8_4:49210707-49210726 None:intergenic 25.0%
!!! ATAGTAAAGTATTTTTCTGC+AGG + chr8_4:49210885-49210904 Msa1330130:intron 25.0%
! ACATACTGAATTGTAATACA+TGG - chr8_4:49211280-49211299 None:intergenic 25.0%
! GTGACTAATGTTATAATACA+TGG + chr8_4:49211298-49211317 Msa1330130:CDS 25.0%
! CATATACATGATTGTAAACA+AGG + chr8_4:49211325-49211344 Msa1330130:CDS 25.0%
! AGTCATATAATTGTTAGAGA+TGG - chr8_4:49211518-49211537 None:intergenic 25.0%
!! CATGATAAAGTTATGCTTTT+GGG + chr8_4:49211541-49211560 Msa1330130:CDS 25.0%
!!! ACTATTGCTTTTAATCACTT+TGG + chr8_4:49211604-49211623 Msa1330130:CDS 25.0%
! AAAGTATATGATGATTACCT+TGG - chr8_4:49211652-49211671 None:intergenic 25.0%
! TAATTAGTGTCTTCAGTATA+TGG + chr8_4:49211860-49211879 Msa1330130:intron 25.0%
! AATTAGTGTCTTCAGTATAT+GGG + chr8_4:49211861-49211880 Msa1330130:intron 25.0%
!! AATGCATCGAATGATTTTAA+CGG + chr8_4:49212124-49212143 Msa1330130:intron 25.0%
!!! TTATAGAATATGGTTTGGTT+TGG + chr8_4:49212602-49212621 Msa1330130:three_prime_UTR 25.0%
! ATTTGTATGTTAAGCTAGTT+TGG - chr8_4:49210707-49210726 None:intergenic 25.0%
!!! ATAGTAAAGTATTTTTCTGC+AGG + chr8_4:49210885-49210904 Msa1330130:intron 25.0%
! ACATACTGAATTGTAATACA+TGG - chr8_4:49211280-49211299 None:intergenic 25.0%
! GTGACTAATGTTATAATACA+TGG + chr8_4:49211298-49211317 Msa1330130:CDS 25.0%
! CATATACATGATTGTAAACA+AGG + chr8_4:49211325-49211344 Msa1330130:CDS 25.0%
! AGTCATATAATTGTTAGAGA+TGG - chr8_4:49211518-49211537 None:intergenic 25.0%
!! CATGATAAAGTTATGCTTTT+GGG + chr8_4:49211541-49211560 Msa1330130:CDS 25.0%
!!! ACTATTGCTTTTAATCACTT+TGG + chr8_4:49211604-49211623 Msa1330130:CDS 25.0%
! AAAGTATATGATGATTACCT+TGG - chr8_4:49211652-49211671 None:intergenic 25.0%
! TAATTAGTGTCTTCAGTATA+TGG + chr8_4:49211860-49211879 Msa1330130:intron 25.0%
! AATTAGTGTCTTCAGTATAT+GGG + chr8_4:49211861-49211880 Msa1330130:intron 25.0%
!! AATGCATCGAATGATTTTAA+CGG + chr8_4:49212124-49212143 Msa1330130:intron 25.0%
!!! TTATAGAATATGGTTTGGTT+TGG + chr8_4:49212602-49212621 Msa1330130:three_prime_UTR 25.0%
! GTCATGTTTAAGGTTGTAAA+GGG - chr8_4:49210572-49210591 None:intergenic 30.0%
! TGTCATGTTTAAGGTTGTAA+AGG - chr8_4:49210573-49210592 None:intergenic 30.0%
! TTTTTCTGCAGGAAAATCAA+TGG + chr8_4:49210896-49210915 Msa1330130:intron 30.0%
!! TTTACCATTTTTACCACCAA+TGG - chr8_4:49211059-49211078 None:intergenic 30.0%
CTTGCAAAGATTATCCATAA+TGG - chr8_4:49211166-49211185 None:intergenic 30.0%
AATTCATTCAAGACCATTGA+TGG + chr8_4:49211223-49211242 Msa1330130:CDS 30.0%
ATACATGATTGTAAACAAGG+TGG + chr8_4:49211328-49211347 Msa1330130:CDS 30.0%
TACATGATTGTAAACAAGGT+GGG + chr8_4:49211329-49211348 Msa1330130:CDS 30.0%
TCTTTGTCTAACTGTAATGA+TGG + chr8_4:49211457-49211476 Msa1330130:CDS 30.0%
GTTTGATTGATGCTATTCAT+GGG + chr8_4:49211479-49211498 Msa1330130:CDS 30.0%
! CCAAAAGCATAACTTTATCA+TGG - chr8_4:49211543-49211562 None:intergenic 30.0%
! CCATGATAAAGTTATGCTTT+TGG + chr8_4:49211540-49211559 Msa1330130:CDS 30.0%
! ATAAACGGGTTTATGAAAAG+TGG + chr8_4:49211753-49211772 Msa1330130:intron 30.0%
! TAAACGGGTTTATGAAAAGT+GGG + chr8_4:49211754-49211773 Msa1330130:intron 30.0%
GTTTATGAAAAGTGGGAAAA+GGG + chr8_4:49211761-49211780 Msa1330130:intron 30.0%
TTTATGAAAAGTGGGAAAAG+GGG + chr8_4:49211762-49211781 Msa1330130:intron 30.0%
AGTGTAGAAATCAATGTGTA+TGG + chr8_4:49211806-49211825 Msa1330130:intron 30.0%
GTGTAGAAATCAATGTGTAT+GGG + chr8_4:49211807-49211826 Msa1330130:intron 30.0%
ATTAGTGTCTTCAGTATATG+GGG + chr8_4:49211862-49211881 Msa1330130:intron 30.0%
TAAACAATGACTATACTCAC+TGG + chr8_4:49211965-49211984 Msa1330130:CDS 30.0%
AAACAATGACTATACTCACT+GGG + chr8_4:49211966-49211985 Msa1330130:CDS 30.0%
ATTGTAGGAAGAAAGTAACA+TGG - chr8_4:49212662-49212681 None:intergenic 30.0%
! GTCATGTTTAAGGTTGTAAA+GGG - chr8_4:49210572-49210591 None:intergenic 30.0%
! TGTCATGTTTAAGGTTGTAA+AGG - chr8_4:49210573-49210592 None:intergenic 30.0%
! TTTTTCTGCAGGAAAATCAA+TGG + chr8_4:49210896-49210915 Msa1330130:intron 30.0%
!! TTTACCATTTTTACCACCAA+TGG - chr8_4:49211059-49211078 None:intergenic 30.0%
CTTGCAAAGATTATCCATAA+TGG - chr8_4:49211166-49211185 None:intergenic 30.0%
AATTCATTCAAGACCATTGA+TGG + chr8_4:49211223-49211242 Msa1330130:CDS 30.0%
ATACATGATTGTAAACAAGG+TGG + chr8_4:49211328-49211347 Msa1330130:CDS 30.0%
TACATGATTGTAAACAAGGT+GGG + chr8_4:49211329-49211348 Msa1330130:CDS 30.0%
TCTTTGTCTAACTGTAATGA+TGG + chr8_4:49211457-49211476 Msa1330130:CDS 30.0%
GTTTGATTGATGCTATTCAT+GGG + chr8_4:49211479-49211498 Msa1330130:CDS 30.0%
! CCAAAAGCATAACTTTATCA+TGG - chr8_4:49211543-49211562 None:intergenic 30.0%
! CCATGATAAAGTTATGCTTT+TGG + chr8_4:49211540-49211559 Msa1330130:CDS 30.0%
! ATAAACGGGTTTATGAAAAG+TGG + chr8_4:49211753-49211772 Msa1330130:intron 30.0%
! TAAACGGGTTTATGAAAAGT+GGG + chr8_4:49211754-49211773 Msa1330130:intron 30.0%
GTTTATGAAAAGTGGGAAAA+GGG + chr8_4:49211761-49211780 Msa1330130:intron 30.0%
TTTATGAAAAGTGGGAAAAG+GGG + chr8_4:49211762-49211781 Msa1330130:intron 30.0%
AGTGTAGAAATCAATGTGTA+TGG + chr8_4:49211806-49211825 Msa1330130:intron 30.0%
GTGTAGAAATCAATGTGTAT+GGG + chr8_4:49211807-49211826 Msa1330130:intron 30.0%
ATTAGTGTCTTCAGTATATG+GGG + chr8_4:49211862-49211881 Msa1330130:intron 30.0%
TAAACAATGACTATACTCAC+TGG + chr8_4:49211965-49211984 Msa1330130:CDS 30.0%
AAACAATGACTATACTCACT+GGG + chr8_4:49211966-49211985 Msa1330130:CDS 30.0%
ATTGTAGGAAGAAAGTAACA+TGG - chr8_4:49212662-49212681 None:intergenic 30.0%
GGTTGTAGTTGTCATGTTTA+AGG - chr8_4:49210582-49210601 None:intergenic 35.0%
AGGAAATGAGAGAAAAAGTG+AGG - chr8_4:49210634-49210653 None:intergenic 35.0%
CTTCTTGTGTAACCAAATCA+GGG - chr8_4:49210673-49210692 None:intergenic 35.0%
ACTTCTTGTGTAACCAAATC+AGG - chr8_4:49210674-49210693 None:intergenic 35.0%
TGGTTACACAAGAAGTTAAC+AGG + chr8_4:49210678-49210697 Msa1330130:CDS 35.0%
AAATCAATGGCTCTTTAGCT+AGG + chr8_4:49210909-49210928 Msa1330130:CDS 35.0%
TCTTTAGCTAGGAGAAACTT+GGG + chr8_4:49210920-49210939 Msa1330130:CDS 35.0%
! GAAACCCAATTGATGATTGT+TGG + chr8_4:49210963-49210982 Msa1330130:CDS 35.0%
ACCTCCAACAATCATCAATT+GGG - chr8_4:49210970-49210989 None:intergenic 35.0%
!!! GTCTGTTTTTTTCCCAGTTT+GGG - chr8_4:49210997-49211016 None:intergenic 35.0%
!!! TGTCTGTTTTTTTCCCAGTT+TGG - chr8_4:49210998-49211017 None:intergenic 35.0%
! AATGCCATTGGTGGTAAAAA+TGG + chr8_4:49211052-49211071 Msa1330130:CDS 35.0%
TAATGGTTCGTCTTGAATCA+CGG - chr8_4:49211149-49211168 None:intergenic 35.0%
TGATTCAAGACGAACCATTA+TGG + chr8_4:49211149-49211168 Msa1330130:CDS 35.0%
GATAATCTTTGCAAGAGACA+TGG + chr8_4:49211171-49211190 Msa1330130:CDS 35.0%
GGTTTGATTGATGCTATTCA+TGG + chr8_4:49211478-49211497 Msa1330130:CDS 35.0%
! GCTTTTAATCACTTTGGTGA+AGG + chr8_4:49211610-49211629 Msa1330130:CDS 35.0%
GGTTTATGAAAAGTGGGAAA+AGG + chr8_4:49211760-49211779 Msa1330130:intron 35.0%
! AAACATATGTGATGGTTTGC+AGG + chr8_4:49211917-49211936 Msa1330130:intron 35.0%
GAAGGGGATTTATTGGTAAA+TGG + chr8_4:49212313-49212332 Msa1330130:CDS 35.0%
ATTGTACCAACTAGAGAAGA+TGG - chr8_4:49212412-49212431 None:intergenic 35.0%
! AGGCTGGTCAATTAATTCAA+GGG + chr8_4:49212513-49212532 Msa1330130:three_prime_UTR 35.0%
TGGTCAATTAATTCAAGGGA+GGG + chr8_4:49212517-49212536 Msa1330130:three_prime_UTR 35.0%
!! GTTTGGTTTGGTCATTTCTT+TGG + chr8_4:49212614-49212633 Msa1330130:three_prime_UTR 35.0%
CCAAAGAGATTAACAACTAG+AGG - chr8_4:49212741-49212760 None:intergenic 35.0%
CCTCTAGTTGTTAATCTCTT+TGG + chr8_4:49212738-49212757 Msa1330130:three_prime_UTR 35.0%
! CTTCTGCAATTGTTTTCTCT+TGG - chr8_4:49212785-49212804 None:intergenic 35.0%
GGTTGTAGTTGTCATGTTTA+AGG - chr8_4:49210582-49210601 None:intergenic 35.0%
AGGAAATGAGAGAAAAAGTG+AGG - chr8_4:49210634-49210653 None:intergenic 35.0%
CTTCTTGTGTAACCAAATCA+GGG - chr8_4:49210673-49210692 None:intergenic 35.0%
ACTTCTTGTGTAACCAAATC+AGG - chr8_4:49210674-49210693 None:intergenic 35.0%
TGGTTACACAAGAAGTTAAC+AGG + chr8_4:49210678-49210697 Msa1330130:CDS 35.0%
AAATCAATGGCTCTTTAGCT+AGG + chr8_4:49210909-49210928 Msa1330130:CDS 35.0%
TCTTTAGCTAGGAGAAACTT+GGG + chr8_4:49210920-49210939 Msa1330130:CDS 35.0%
! GAAACCCAATTGATGATTGT+TGG + chr8_4:49210963-49210982 Msa1330130:CDS 35.0%
ACCTCCAACAATCATCAATT+GGG - chr8_4:49210970-49210989 None:intergenic 35.0%
!!! GTCTGTTTTTTTCCCAGTTT+GGG - chr8_4:49210997-49211016 None:intergenic 35.0%
!!! TGTCTGTTTTTTTCCCAGTT+TGG - chr8_4:49210998-49211017 None:intergenic 35.0%
! AATGCCATTGGTGGTAAAAA+TGG + chr8_4:49211052-49211071 Msa1330130:CDS 35.0%
TAATGGTTCGTCTTGAATCA+CGG - chr8_4:49211149-49211168 None:intergenic 35.0%
TGATTCAAGACGAACCATTA+TGG + chr8_4:49211149-49211168 Msa1330130:CDS 35.0%
GATAATCTTTGCAAGAGACA+TGG + chr8_4:49211171-49211190 Msa1330130:CDS 35.0%
GGTTTGATTGATGCTATTCA+TGG + chr8_4:49211478-49211497 Msa1330130:CDS 35.0%
! GCTTTTAATCACTTTGGTGA+AGG + chr8_4:49211610-49211629 Msa1330130:CDS 35.0%
GGTTTATGAAAAGTGGGAAA+AGG + chr8_4:49211760-49211779 Msa1330130:intron 35.0%
! AAACATATGTGATGGTTTGC+AGG + chr8_4:49211917-49211936 Msa1330130:intron 35.0%
GAAGGGGATTTATTGGTAAA+TGG + chr8_4:49212313-49212332 Msa1330130:CDS 35.0%
ATTGTACCAACTAGAGAAGA+TGG - chr8_4:49212412-49212431 None:intergenic 35.0%
! AGGCTGGTCAATTAATTCAA+GGG + chr8_4:49212513-49212532 Msa1330130:three_prime_UTR 35.0%
TGGTCAATTAATTCAAGGGA+GGG + chr8_4:49212517-49212536 Msa1330130:three_prime_UTR 35.0%
!! GTTTGGTTTGGTCATTTCTT+TGG + chr8_4:49212614-49212633 Msa1330130:three_prime_UTR 35.0%
CCAAAGAGATTAACAACTAG+AGG - chr8_4:49212741-49212760 None:intergenic 35.0%
CCTCTAGTTGTTAATCTCTT+TGG + chr8_4:49212738-49212757 Msa1330130:three_prime_UTR 35.0%
! CTTCTGCAATTGTTTTCTCT+TGG - chr8_4:49212785-49212804 None:intergenic 35.0%
AAGGAAGAAGAGTGAGGAAT+TGG - chr8_4:49210603-49210622 None:intergenic 40.0%
AAAAAGTGAGGAGAGAGAGA+AGG - chr8_4:49210622-49210641 None:intergenic 40.0%
CTCTTTAGCTAGGAGAAACT+TGG + chr8_4:49210919-49210938 Msa1330130:CDS 40.0%
CTTTAGCTAGGAGAAACTTG+GGG + chr8_4:49210921-49210940 Msa1330130:CDS 40.0%
! ACCCAATTGATGATTGTTGG+AGG + chr8_4:49210966-49210985 Msa1330130:CDS 40.0%
CACCTCCAACAATCATCAAT+TGG - chr8_4:49210971-49210990 None:intergenic 40.0%
AGACTAGCAGATTGTGCAAT+TGG + chr8_4:49211019-49211038 Msa1330130:CDS 40.0%
GACTAGCAGATTGTGCAATT+GGG + chr8_4:49211020-49211039 Msa1330130:CDS 40.0%
ATCTACGTCGTAACAGATTC+TGG + chr8_4:49211079-49211098 Msa1330130:CDS 40.0%
TTCAAGACCATTGATGGAAG+AGG + chr8_4:49211229-49211248 Msa1330130:CDS 40.0%
! GGTGATGGTGTTTCAATCTT+TGG + chr8_4:49211406-49211425 Msa1330130:CDS 40.0%
GATGGTGTTTCAATCTTTGG+TGG + chr8_4:49211409-49211428 Msa1330130:CDS 40.0%
TCTTTGGTGGAAGTCATGTT+TGG + chr8_4:49211422-49211441 Msa1330130:CDS 40.0%
CTTTGGTGGAAGTCATGTTT+GGG + chr8_4:49211423-49211442 Msa1330130:CDS 40.0%
GTTAGAGATGGTAATTGCAG+TGG - chr8_4:49211506-49211525 None:intergenic 40.0%
ACCTTGGCATTCTTTGAACA+AGG - chr8_4:49211636-49211655 None:intergenic 40.0%
!! TAGGCATGGTTATTTTCACG+TGG + chr8_4:49211942-49211961 Msa1330130:CDS 40.0%
CACTGGGAAATGTATGCTAT+TGG + chr8_4:49211982-49212001 Msa1330130:CDS 40.0%
TGGGAAATGTATGCTATTGG+AGG + chr8_4:49211985-49212004 Msa1330130:CDS 40.0%
AATCCTACCATCAATAGCCA+AGG + chr8_4:49212015-49212034 Msa1330130:CDS 40.0%
! TTTCCTTGGCTATTGATGGT+AGG - chr8_4:49212021-49212040 None:intergenic 40.0%
TCTGTTTCCTTGGCTATTGA+TGG - chr8_4:49212025-49212044 None:intergenic 40.0%
TCTTTGCTGAATCTGTCATC+GGG - chr8_4:49212057-49212076 None:intergenic 40.0%
CTCTTTGCTGAATCTGTCAT+CGG - chr8_4:49212058-49212077 None:intergenic 40.0%
!! ATTTTAGGTGACAAAGCACG+AGG + chr8_4:49212249-49212268 Msa1330130:intron 40.0%
GTGAATGGAAAGGATGGAAT+TGG + chr8_4:49212284-49212303 Msa1330130:CDS 40.0%
GATGGAATTGGAGATCAGAA+GGG + chr8_4:49212296-49212315 Msa1330130:CDS 40.0%
ATGGAATTGGAGATCAGAAG+GGG + chr8_4:49212297-49212316 Msa1330130:CDS 40.0%
GAGATCAGAAGGGGATTTAT+TGG + chr8_4:49212306-49212325 Msa1330130:CDS 40.0%
!!! GGTGCATTTTTTACACCATC+AGG + chr8_4:49212334-49212353 Msa1330130:CDS 40.0%
!!! TTTTTTACACCATCAGGAGC+AGG + chr8_4:49212340-49212359 Msa1330130:CDS 40.0%
! CTAGTTGGTACAATAACGAC+TGG + chr8_4:49212418-49212437 Msa1330130:CDS 40.0%
GGTGTACTTGGTTGTAAGAA+AGG + chr8_4:49212445-49212464 Msa1330130:CDS 40.0%
! CAGGCTGGTCAATTAATTCA+AGG + chr8_4:49212512-49212531 Msa1330130:three_prime_UTR 40.0%
CTGGTCAATTAATTCAAGGG+AGG + chr8_4:49212516-49212535 Msa1330130:three_prime_UTR 40.0%
TTAATTCAAGGGAGGGAAGT+TGG + chr8_4:49212524-49212543 Msa1330130:three_prime_UTR 40.0%
GTTTGGTCATTTCTTTGGCT+AGG + chr8_4:49212619-49212638 Msa1330130:three_prime_UTR 40.0%
AAGGAAGAAGAGTGAGGAAT+TGG - chr8_4:49210603-49210622 None:intergenic 40.0%
AAAAAGTGAGGAGAGAGAGA+AGG - chr8_4:49210622-49210641 None:intergenic 40.0%
CTCTTTAGCTAGGAGAAACT+TGG + chr8_4:49210919-49210938 Msa1330130:CDS 40.0%
CTTTAGCTAGGAGAAACTTG+GGG + chr8_4:49210921-49210940 Msa1330130:CDS 40.0%
! ACCCAATTGATGATTGTTGG+AGG + chr8_4:49210966-49210985 Msa1330130:CDS 40.0%
CACCTCCAACAATCATCAAT+TGG - chr8_4:49210971-49210990 None:intergenic 40.0%
AGACTAGCAGATTGTGCAAT+TGG + chr8_4:49211019-49211038 Msa1330130:CDS 40.0%
GACTAGCAGATTGTGCAATT+GGG + chr8_4:49211020-49211039 Msa1330130:CDS 40.0%
ATCTACGTCGTAACAGATTC+TGG + chr8_4:49211079-49211098 Msa1330130:CDS 40.0%
TTCAAGACCATTGATGGAAG+AGG + chr8_4:49211229-49211248 Msa1330130:CDS 40.0%
! GGTGATGGTGTTTCAATCTT+TGG + chr8_4:49211406-49211425 Msa1330130:CDS 40.0%
GATGGTGTTTCAATCTTTGG+TGG + chr8_4:49211409-49211428 Msa1330130:CDS 40.0%
TCTTTGGTGGAAGTCATGTT+TGG + chr8_4:49211422-49211441 Msa1330130:CDS 40.0%
CTTTGGTGGAAGTCATGTTT+GGG + chr8_4:49211423-49211442 Msa1330130:CDS 40.0%
GTTAGAGATGGTAATTGCAG+TGG - chr8_4:49211506-49211525 None:intergenic 40.0%
ACCTTGGCATTCTTTGAACA+AGG - chr8_4:49211636-49211655 None:intergenic 40.0%
!! TAGGCATGGTTATTTTCACG+TGG + chr8_4:49211942-49211961 Msa1330130:CDS 40.0%
CACTGGGAAATGTATGCTAT+TGG + chr8_4:49211982-49212001 Msa1330130:CDS 40.0%
TGGGAAATGTATGCTATTGG+AGG + chr8_4:49211985-49212004 Msa1330130:CDS 40.0%
AATCCTACCATCAATAGCCA+AGG + chr8_4:49212015-49212034 Msa1330130:CDS 40.0%
! TTTCCTTGGCTATTGATGGT+AGG - chr8_4:49212021-49212040 None:intergenic 40.0%
TCTGTTTCCTTGGCTATTGA+TGG - chr8_4:49212025-49212044 None:intergenic 40.0%
TCTTTGCTGAATCTGTCATC+GGG - chr8_4:49212057-49212076 None:intergenic 40.0%
CTCTTTGCTGAATCTGTCAT+CGG - chr8_4:49212058-49212077 None:intergenic 40.0%
!! ATTTTAGGTGACAAAGCACG+AGG + chr8_4:49212249-49212268 Msa1330130:intron 40.0%
GTGAATGGAAAGGATGGAAT+TGG + chr8_4:49212284-49212303 Msa1330130:CDS 40.0%
GATGGAATTGGAGATCAGAA+GGG + chr8_4:49212296-49212315 Msa1330130:CDS 40.0%
ATGGAATTGGAGATCAGAAG+GGG + chr8_4:49212297-49212316 Msa1330130:CDS 40.0%
GAGATCAGAAGGGGATTTAT+TGG + chr8_4:49212306-49212325 Msa1330130:CDS 40.0%
!!! GGTGCATTTTTTACACCATC+AGG + chr8_4:49212334-49212353 Msa1330130:CDS 40.0%
!!! TTTTTTACACCATCAGGAGC+AGG + chr8_4:49212340-49212359 Msa1330130:CDS 40.0%
! CTAGTTGGTACAATAACGAC+TGG + chr8_4:49212418-49212437 Msa1330130:CDS 40.0%
GGTGTACTTGGTTGTAAGAA+AGG + chr8_4:49212445-49212464 Msa1330130:CDS 40.0%
! CAGGCTGGTCAATTAATTCA+AGG + chr8_4:49212512-49212531 Msa1330130:three_prime_UTR 40.0%
CTGGTCAATTAATTCAAGGG+AGG + chr8_4:49212516-49212535 Msa1330130:three_prime_UTR 40.0%
TTAATTCAAGGGAGGGAAGT+TGG + chr8_4:49212524-49212543 Msa1330130:three_prime_UTR 40.0%
GTTTGGTCATTTCTTTGGCT+AGG + chr8_4:49212619-49212638 Msa1330130:three_prime_UTR 40.0%
AGAGAGAAGGAAGAAGAGTG+AGG - chr8_4:49210609-49210628 None:intergenic 45.0%
ACCTCTTCAAGACCCTGATT+TGG + chr8_4:49210658-49210677 Msa1330130:CDS 45.0%
ACCAAATCAGGGTCTTGAAG+AGG - chr8_4:49210662-49210681 None:intergenic 45.0%
GCAGATTGTGCAATTGGGTT+CGG + chr8_4:49211025-49211044 Msa1330130:CDS 45.0%
TTCGGTAAGAATGCCATTGG+TGG + chr8_4:49211043-49211062 Msa1330130:CDS 45.0%
TTGAATCACGGCGAAACGAA+GGG - chr8_4:49211137-49211156 None:intergenic 45.0%
ACTAGCTCCTCTTCCATCAA+TGG - chr8_4:49211239-49211258 None:intergenic 45.0%
TAAACAAGGTGGGAATGCCA+TGG + chr8_4:49211339-49211358 Msa1330130:CDS 45.0%
TTCTCCACCCATAATGTCCT+GGG - chr8_4:49211375-49211394 None:intergenic 45.0%
AGAACAGTATCAGACGGTGA+TGG + chr8_4:49211391-49211410 Msa1330130:CDS 45.0%
! GCCTTGTTCAAAGAATGCCA+AGG + chr8_4:49211632-49211651 Msa1330130:CDS 45.0%
ATGAAAAGTGGGAAAAGGGG+TGG + chr8_4:49211765-49211784 Msa1330130:intron 45.0%
TGAAAAGTGGGAAAAGGGGT+GGG + chr8_4:49211766-49211785 Msa1330130:intron 45.0%
! ATGTGATGGTTTGCAGGTGT+AGG + chr8_4:49211923-49211942 Msa1330130:intron 45.0%
GGGCTACAAATCTGTTTCCT+TGG - chr8_4:49212035-49212054 None:intergenic 45.0%
TTTGCTGAATCTGTCATCGG+GGG - chr8_4:49212055-49212074 None:intergenic 45.0%
CTTTGCTGAATCTGTCATCG+GGG - chr8_4:49212056-49212075 None:intergenic 45.0%
CGATGACAGATTCAGCAAAG+AGG + chr8_4:49212056-49212075 Msa1330130:CDS 45.0%
CATCCTTTCCATTCACCTTC+TGG - chr8_4:49212280-49212299 None:intergenic 45.0%
CAGAAGGTGAATGGAAAGGA+TGG + chr8_4:49212278-49212297 Msa1330130:CDS 45.0%
GGATGGAATTGGAGATCAGA+AGG + chr8_4:49212295-49212314 Msa1330130:CDS 45.0%
GCAAGACCATCTTCTCTAGT+TGG + chr8_4:49212403-49212422 Msa1330130:CDS 45.0%
AGAGACAGTTGTTTGCTCGA+GGG - chr8_4:49212491-49212510 None:intergenic 45.0%
AGAGAGAAGGAAGAAGAGTG+AGG - chr8_4:49210609-49210628 None:intergenic 45.0%
ACCTCTTCAAGACCCTGATT+TGG + chr8_4:49210658-49210677 Msa1330130:CDS 45.0%
ACCAAATCAGGGTCTTGAAG+AGG - chr8_4:49210662-49210681 None:intergenic 45.0%
GCAGATTGTGCAATTGGGTT+CGG + chr8_4:49211025-49211044 Msa1330130:CDS 45.0%
TTCGGTAAGAATGCCATTGG+TGG + chr8_4:49211043-49211062 Msa1330130:CDS 45.0%
TTGAATCACGGCGAAACGAA+GGG - chr8_4:49211137-49211156 None:intergenic 45.0%
ACTAGCTCCTCTTCCATCAA+TGG - chr8_4:49211239-49211258 None:intergenic 45.0%
TAAACAAGGTGGGAATGCCA+TGG + chr8_4:49211339-49211358 Msa1330130:CDS 45.0%
TTCTCCACCCATAATGTCCT+GGG - chr8_4:49211375-49211394 None:intergenic 45.0%
AGAACAGTATCAGACGGTGA+TGG + chr8_4:49211391-49211410 Msa1330130:CDS 45.0%
! GCCTTGTTCAAAGAATGCCA+AGG + chr8_4:49211632-49211651 Msa1330130:CDS 45.0%
ATGAAAAGTGGGAAAAGGGG+TGG + chr8_4:49211765-49211784 Msa1330130:intron 45.0%
TGAAAAGTGGGAAAAGGGGT+GGG + chr8_4:49211766-49211785 Msa1330130:intron 45.0%
! ATGTGATGGTTTGCAGGTGT+AGG + chr8_4:49211923-49211942 Msa1330130:intron 45.0%
GGGCTACAAATCTGTTTCCT+TGG - chr8_4:49212035-49212054 None:intergenic 45.0%
TTTGCTGAATCTGTCATCGG+GGG - chr8_4:49212055-49212074 None:intergenic 45.0%
CTTTGCTGAATCTGTCATCG+GGG - chr8_4:49212056-49212075 None:intergenic 45.0%
CGATGACAGATTCAGCAAAG+AGG + chr8_4:49212056-49212075 Msa1330130:CDS 45.0%
CATCCTTTCCATTCACCTTC+TGG - chr8_4:49212280-49212299 None:intergenic 45.0%
CAGAAGGTGAATGGAAAGGA+TGG + chr8_4:49212278-49212297 Msa1330130:CDS 45.0%
GGATGGAATTGGAGATCAGA+AGG + chr8_4:49212295-49212314 Msa1330130:CDS 45.0%
GCAAGACCATCTTCTCTAGT+TGG + chr8_4:49212403-49212422 Msa1330130:CDS 45.0%
AGAGACAGTTGTTTGCTCGA+GGG - chr8_4:49212491-49212510 None:intergenic 45.0%
!! AATTAATTAATTATAGAATA+TGG + chr8_4:49212592-49212611 Msa1330130:three_prime_UTR 5.0%
!! AATTAATTAATTATAGAATA+TGG + chr8_4:49212592-49212611 Msa1330130:three_prime_UTR 5.0%
AGGGTCTTGAAGAGGTGAAG+AGG - chr8_4:49210654-49210673 None:intergenic 50.0%
! AACTTGGGGTACCTCTCATG+TGG + chr8_4:49210935-49210954 Msa1330130:CDS 50.0%
GGTTTCCACTTCCACATGAG+AGG - chr8_4:49210949-49210968 None:intergenic 50.0%
! TTGGAGGTGTGACCCAAACT+GGG + chr8_4:49210982-49211001 Msa1330130:CDS 50.0%
! GGGTTCGGTAAGAATGCCAT+TGG + chr8_4:49211040-49211059 Msa1330130:CDS 50.0%
! AGATTCTGGTGACGACGATC+CGG + chr8_4:49211093-49211112 Msa1330130:CDS 50.0%
!!! AAACGAAGGGTACCGGGTTT+TGG - chr8_4:49211124-49211143 None:intergenic 50.0%
CTTGAATCACGGCGAAACGA+AGG - chr8_4:49211138-49211157 None:intergenic 50.0%
GGAGCTAGTGTTCACATTGC+TGG + chr8_4:49211250-49211269 Msa1330130:CDS 50.0%
GCTAGTGTTCACATTGCTGG+TGG + chr8_4:49211253-49211272 Msa1330130:CDS 50.0%
TCTCCACCCATAATGTCCTG+GGG - chr8_4:49211374-49211393 None:intergenic 50.0%
GTTCTCCACCCATAATGTCC+TGG - chr8_4:49211376-49211395 None:intergenic 50.0%
GGGTGGAGAACAGTATCAGA+CGG + chr8_4:49211385-49211404 Msa1330130:CDS 50.0%
TGGTGGAAGTCATGTTTGGG+TGG + chr8_4:49211426-49211445 Msa1330130:CDS 50.0%
! ATGGTTTGCAGGTGTAGGCA+TGG + chr8_4:49211928-49211947 Msa1330130:intron 50.0%
TTTACACCATCAGGAGCAGG+AGG + chr8_4:49212343-49212362 Msa1330130:CDS 50.0%
GGTACAATAACGACTGGTGC+TGG + chr8_4:49212424-49212443 Msa1330130:CDS 50.0%
GAGACAGTTGTTTGCTCGAG+GGG - chr8_4:49212490-49212509 None:intergenic 50.0%
CAGAGACAGTTGTTTGCTCG+AGG - chr8_4:49212492-49212511 None:intergenic 50.0%
GAGCAAACAACTGTCTCTGC+AGG + chr8_4:49212493-49212512 Msa1330130:three_prime_UTR 50.0%
AAACAACTGTCTCTGCAGGC+TGG + chr8_4:49212497-49212516 Msa1330130:three_prime_UTR 50.0%
AGGGTCTTGAAGAGGTGAAG+AGG - chr8_4:49210654-49210673 None:intergenic 50.0%
! AACTTGGGGTACCTCTCATG+TGG + chr8_4:49210935-49210954 Msa1330130:CDS 50.0%
GGTTTCCACTTCCACATGAG+AGG - chr8_4:49210949-49210968 None:intergenic 50.0%
! TTGGAGGTGTGACCCAAACT+GGG + chr8_4:49210982-49211001 Msa1330130:CDS 50.0%
! GGGTTCGGTAAGAATGCCAT+TGG + chr8_4:49211040-49211059 Msa1330130:CDS 50.0%
! AGATTCTGGTGACGACGATC+CGG + chr8_4:49211093-49211112 Msa1330130:CDS 50.0%
!!! AAACGAAGGGTACCGGGTTT+TGG - chr8_4:49211124-49211143 None:intergenic 50.0%
CTTGAATCACGGCGAAACGA+AGG - chr8_4:49211138-49211157 None:intergenic 50.0%
GGAGCTAGTGTTCACATTGC+TGG + chr8_4:49211250-49211269 Msa1330130:CDS 50.0%
GCTAGTGTTCACATTGCTGG+TGG + chr8_4:49211253-49211272 Msa1330130:CDS 50.0%
TCTCCACCCATAATGTCCTG+GGG - chr8_4:49211374-49211393 None:intergenic 50.0%
GTTCTCCACCCATAATGTCC+TGG - chr8_4:49211376-49211395 None:intergenic 50.0%
GGGTGGAGAACAGTATCAGA+CGG + chr8_4:49211385-49211404 Msa1330130:CDS 50.0%
TGGTGGAAGTCATGTTTGGG+TGG + chr8_4:49211426-49211445 Msa1330130:CDS 50.0%
! ATGGTTTGCAGGTGTAGGCA+TGG + chr8_4:49211928-49211947 Msa1330130:intron 50.0%
TTTACACCATCAGGAGCAGG+AGG + chr8_4:49212343-49212362 Msa1330130:CDS 50.0%
GGTACAATAACGACTGGTGC+TGG + chr8_4:49212424-49212443 Msa1330130:CDS 50.0%
GAGACAGTTGTTTGCTCGAG+GGG - chr8_4:49212490-49212509 None:intergenic 50.0%
CAGAGACAGTTGTTTGCTCG+AGG - chr8_4:49212492-49212511 None:intergenic 50.0%
GAGCAAACAACTGTCTCTGC+AGG + chr8_4:49212493-49212512 Msa1330130:three_prime_UTR 50.0%
AAACAACTGTCTCTGCAGGC+TGG + chr8_4:49212497-49212516 Msa1330130:three_prime_UTR 50.0%
GGGTACCTCTCATGTGGAAG+TGG + chr8_4:49210941-49210960 Msa1330130:CDS 55.0%
! GTTGGAGGTGTGACCCAAAC+TGG + chr8_4:49210981-49211000 Msa1330130:CDS 55.0%
GATCCGGTGACACCAAAACC+CGG + chr8_4:49211109-49211128 Msa1330130:CDS 55.0%
!!! GTACCGGGTTTTGGTGTCAC+CGG - chr8_4:49211115-49211134 None:intergenic 55.0%
AAGGTGGGAATGCCATGGTG+AGG + chr8_4:49211344-49211363 Msa1330130:CDS 55.0%
AGGTGGGAATGCCATGGTGA+GGG + chr8_4:49211345-49211364 Msa1330130:CDS 55.0%
AGGGACTCCCCAGGACATTA+TGG + chr8_4:49211364-49211383 Msa1330130:CDS 55.0%
GGGACTCCCCAGGACATTAT+GGG + chr8_4:49211365-49211384 Msa1330130:CDS 55.0%
ACTCCCCAGGACATTATGGG+TGG + chr8_4:49211368-49211387 Msa1330130:CDS 55.0%
AGGATGCGCCAGAAGGTGAA+TGG + chr8_4:49212269-49212288 Msa1330130:CDS 55.0%
GCGCCAGAAGGTGAATGGAA+AGG + chr8_4:49212274-49212293 Msa1330130:CDS 55.0%
!! ACGACTGGTGCTGGTGTACT+TGG + chr8_4:49212433-49212452 Msa1330130:CDS 55.0%
GGGTACCTCTCATGTGGAAG+TGG + chr8_4:49210941-49210960 Msa1330130:CDS 55.0%
! GTTGGAGGTGTGACCCAAAC+TGG + chr8_4:49210981-49211000 Msa1330130:CDS 55.0%
GATCCGGTGACACCAAAACC+CGG + chr8_4:49211109-49211128 Msa1330130:CDS 55.0%
!!! GTACCGGGTTTTGGTGTCAC+CGG - chr8_4:49211115-49211134 None:intergenic 55.0%
AAGGTGGGAATGCCATGGTG+AGG + chr8_4:49211344-49211363 Msa1330130:CDS 55.0%
AGGTGGGAATGCCATGGTGA+GGG + chr8_4:49211345-49211364 Msa1330130:CDS 55.0%
AGGGACTCCCCAGGACATTA+TGG + chr8_4:49211364-49211383 Msa1330130:CDS 55.0%
GGGACTCCCCAGGACATTAT+GGG + chr8_4:49211365-49211384 Msa1330130:CDS 55.0%
ACTCCCCAGGACATTATGGG+TGG + chr8_4:49211368-49211387 Msa1330130:CDS 55.0%
AGGATGCGCCAGAAGGTGAA+TGG + chr8_4:49212269-49212288 Msa1330130:CDS 55.0%
GCGCCAGAAGGTGAATGGAA+AGG + chr8_4:49212274-49212293 Msa1330130:CDS 55.0%
!! ACGACTGGTGCTGGTGTACT+TGG + chr8_4:49212433-49212452 Msa1330130:CDS 55.0%
!! ACGGCGAAACGAAGGGTACC+GGG - chr8_4:49211130-49211149 None:intergenic 60.0%
! CACGGCGAAACGAAGGGTAC+CGG - chr8_4:49211131-49211150 None:intergenic 60.0%
AAGCACGAGGATGCGCCAGA+AGG + chr8_4:49212262-49212281 Msa1330130:CDS 60.0%
GATGCTCCTCCTGCTCCTGA+TGG - chr8_4:49212352-49212371 None:intergenic 60.0%
!! ACGGCGAAACGAAGGGTACC+GGG - chr8_4:49211130-49211149 None:intergenic 60.0%
! CACGGCGAAACGAAGGGTAC+CGG - chr8_4:49211131-49211150 None:intergenic 60.0%
AAGCACGAGGATGCGCCAGA+AGG + chr8_4:49212262-49212281 Msa1330130:CDS 60.0%
GATGCTCCTCCTGCTCCTGA+TGG - chr8_4:49212352-49212371 None:intergenic 60.0%
TCCTGGGGAGTCCCTCACCA+TGG - chr8_4:49211359-49211378 None:intergenic 65.0%
TCCTGGGGAGTCCCTCACCA+TGG - chr8_4:49211359-49211378 None:intergenic 65.0%
GCCATGGTGAGGGACTCCCC+AGG + chr8_4:49211355-49211374 Msa1330130:CDS 70.0%
GCCATGGTGAGGGACTCCCC+AGG + chr8_4:49211355-49211374 Msa1330130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49210553 49212844 49210553 ID=Msa1330130;Name=Msa1330130
chr8_4 mRNA 49210553 49212844 49210553 ID=Msa1330130-mRNA-1;Parent=Msa1330130;Name=Msa1330130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=34|1|1|1|1|1|4|364|407
chr8_4 exon 49210553 49210699 49210553 ID=Msa1330130-mRNA-1:exon:14206;Parent=Msa1330130-mRNA-1
chr8_4 exon 49210907 49211653 49210907 ID=Msa1330130-mRNA-1:exon:14207;Parent=Msa1330130-mRNA-1
chr8_4 exon 49211939 49212077 49211939 ID=Msa1330130-mRNA-1:exon:14208;Parent=Msa1330130-mRNA-1
chr8_4 exon 49212256 49212844 49212256 ID=Msa1330130-mRNA-1:exon:14209;Parent=Msa1330130-mRNA-1
chr8_4 five_prime_UTR 49210553 49210586 49210553 ID=Msa1330130-mRNA-1:five_prime_utr;Parent=Msa1330130-mRNA-1
chr8_4 CDS 49210587 49210699 49210587 ID=Msa1330130-mRNA-1:cds;Parent=Msa1330130-mRNA-1
chr8_4 CDS 49210907 49211653 49210907 ID=Msa1330130-mRNA-1:cds;Parent=Msa1330130-mRNA-1
chr8_4 CDS 49211939 49212077 49211939 ID=Msa1330130-mRNA-1:cds;Parent=Msa1330130-mRNA-1
chr8_4 CDS 49212256 49212480 49212256 ID=Msa1330130-mRNA-1:cds;Parent=Msa1330130-mRNA-1
chr8_4 three_prime_UTR 49212481 49212844 49212481 ID=Msa1330130-mRNA-1:three_prime_utr;Parent=Msa1330130-mRNA-1
Gene Sequence

>Msa1330130

ATGACAACTACAACCAATTCCTCACTCTTCTTCCTTCTCTCTCTCCTCACTTTTTCTCTCATTTCCTCTTCACCTCTTCAAGACCCTGATTTGGTTACACAAGAAGTTAACAGGAAAATCAATGGCTCTTTAGCTAGGAGAAACTTGGGGTACCTCTCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGACCCAAACTGGGAAAAAAACAGACAGAGACTAGCAGATTGTGCAATTGGGTTCGGTAAGAATGCCATTGGTGGTAAAAATGGTAAAATCTACGTCGTAACAGATTCTGGTGACGACGATCCGGTGACACCAAAACCCGGTACCCTTCGTTTCGCCGTGATTCAAGACGAACCATTATGGATAATCTTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAGCTTATAATGAATTCATTCAAGACCATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGTGGTCCATGTATTACAATTCAGTATGTGACTAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGGAATGCCATGGTGAGGGACTCCCCAGGACATTATGGGTGGAGAACAGTATCAGACGGTGATGGTGTTTCAATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATTCATGGGTCCACTGCAATTACCATCTCTAACAATTATATGACTCACCATGATAAAGTTATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGTTATTTTCACGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCTACCATCAATAGCCAAGGAAACAGATTTGTAGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCGCCAGAAGGTGAATGGAAAGGATGGAATTGGAGATCAGAAGGGGATTTATTGGTAAATGGTGCATTTTTTACACCATCAGGAGCAGGAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACGACTGGTGCTGGTGTACTTGGTTGTAAGAAAGGTTCTCGTTGCTGA
Protein sequence

>Msa1330130

MTTTTNSSLFFLLSLLTFSLISSSPLQDPDLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLVNGAFFTPSGAGGASSSYARASSLSARPSSLVGTITTGAGVLGCKKGSRC*