AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208670 MtrunA17_Chr4g0058051 99.509 407 2 0 1 407 1 407 0.0 843
Msa1208670 MtrunA17_Chr3g0116521 87.224 407 51 1 1 407 1 406 0.0 690
Msa1208670 MtrunA17_Chr6g0458201 79.052 401 83 1 7 407 5 404 0.0 676
Msa1208670 MtrunA17_Chr3g0123321 79.177 389 77 3 19 407 19 403 0.0 603
Msa1208670 MtrunA17_Chr7g0237761 69.287 407 121 2 1 407 42 444 0.0 592
Msa1208670 MtrunA17_Chr1g0169731 72.680 388 105 1 20 407 64 450 0.0 588
Msa1208670 MtrunA17_Chr3g0123331 68.250 400 125 2 9 407 8 406 0.0 558
Msa1208670 MtrunA17_Chr1g0210321 64.800 375 128 2 29 400 35 408 0.0 524
Msa1208670 MtrunA17_Chr1g0180381 61.461 397 143 3 14 403 22 415 0.0 516
Msa1208670 MtrunA17_Chr7g0264891 63.918 388 136 3 14 400 23 407 1.47e-179 508
Msa1208670 MtrunA17_Chr4g0060211 58.140 387 152 3 28 407 51 434 3.96e-167 475
Msa1208670 MtrunA17_Chr5g0416061 57.181 376 161 0 32 407 74 449 6.48e-158 452
Msa1208670 MtrunA17_Chr4g0075231 61.429 350 132 2 58 407 39 385 9.10e-158 449
Msa1208670 MtrunA17_Chr8g0362561 58.333 372 144 2 47 407 84 455 4.36e-157 451
Msa1208670 MtrunA17_Chr2g0288921 52.267 419 178 5 1 407 1 409 4.69e-152 436
Msa1208670 MtrunA17_Chr5g0416041 56.316 380 162 1 32 407 70 449 5.93e-151 435
Msa1208670 MtrunA17_Chr6g0452861 57.627 354 150 0 54 407 100 453 1.08e-149 432
Msa1208670 MtrunA17_Chr7g0216581 57.345 354 151 0 54 407 98 451 1.70e-143 416
Msa1208670 MtrunA17_Chr8g0373761 44.225 355 189 7 58 407 42 392 2.87e-96 293
Msa1208670 MtrunA17_Chr8g0373721 43.785 354 192 6 58 407 42 392 6.04e-96 292
Msa1208670 MtrunA17_Chr3g0089181 44.663 356 186 9 58 407 23 373 7.73e-95 289
Msa1208670 MtrunA17_Chr8g0373731 44.507 355 188 7 58 407 42 392 1.91e-89 276
Msa1208670 MtrunA17_Chr8g0373701 42.817 355 194 8 58 407 97 447 8.07e-89 276
Msa1208670 MtrunA17_Chr5g0403481 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1208670 MtrunA17_Chr5g0403461 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1208670 MtrunA17_Chr5g0403491 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1208670 MtrunA17_Chr5g0403391 43.662 355 191 7 58 407 41 391 1.06e-86 268
Msa1208670 MtrunA17_Chr5g0414541 43.662 355 191 7 58 407 41 391 1.73e-86 268
Msa1208670 MtrunA17_Chr5g0403411 43.380 355 192 7 58 407 41 391 1.15e-82 258
Msa1208670 MtrunA17_Chr4g0031851 43.269 312 170 6 97 405 28 335 6.44e-80 250
Msa1208670 MtrunA17_Chr3g0113551 60.894 179 54 2 152 328 122 286 8.74e-71 224
Msa1208670 MtrunA17_Chr1g0183941 42.537 268 151 3 133 399 1 266 4.96e-68 216
Msa1208670 MtrunA17_Chr2g0288901 51.282 156 72 2 252 407 5 156 1.72e-50 167
Msa1208670 MtrunA17_Chr1g0212931 37.329 292 157 7 71 361 9 275 2.91e-46 162
Msa1208670 MtrunA17_Chr2g0288911 59.836 122 48 1 133 253 1 122 4.80e-44 149
Msa1208670 MtrunA17_Chr1g0182021 36.364 286 156 6 77 361 64 324 5.44e-39 144
Msa1208670 MtrunA17_Chr6g0481851 47.436 156 80 2 208 363 71 224 1.38e-37 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208670 AT5G63180.1 82.045 401 71 1 8 407 32 432 0.0 681
Msa1208670 AT1G67750.1 83.033 389 63 2 19 407 23 408 0.0 662
Msa1208670 AT4G24780.2 80.685 409 76 3 1 407 1 408 0.0 657
Msa1208670 AT4G24780.1 80.685 409 76 3 1 407 1 408 0.0 657
Msa1208670 AT4G13710.1 73.698 384 96 2 28 407 88 470 0.0 621
Msa1208670 AT3G27400.2 73.188 414 102 4 1 407 5 416 0.0 620
Msa1208670 AT3G27400.1 73.188 414 102 4 1 407 1 412 0.0 620
Msa1208670 AT4G13710.2 73.698 384 96 2 28 407 69 451 0.0 619
Msa1208670 AT3G07010.1 72.513 382 104 1 26 407 36 416 0.0 585
Msa1208670 AT1G04680.1 69.471 416 109 4 9 407 15 429 0.0 585
Msa1208670 AT3G07010.2 73.210 377 100 1 31 407 8 383 0.0 580
Msa1208670 AT3G24670.1 70.157 382 113 1 26 407 60 440 0.0 574
Msa1208670 AT3G24230.1 67.263 391 122 2 21 407 63 451 0.0 563
Msa1208670 AT5G48900.1 72.775 382 103 1 26 407 37 417 0.0 561
Msa1208670 AT4G13210.2 71.540 383 107 2 26 407 57 438 0.0 560
Msa1208670 AT4G13210.1 71.540 383 107 2 26 407 20 401 0.0 558
Msa1208670 AT3G53190.1 63.119 404 137 3 8 400 13 415 0.0 524
Msa1208670 AT5G04310.3 61.750 400 137 3 14 400 40 436 2.83e-176 500
Msa1208670 AT5G04310.1 61.386 404 140 3 14 404 40 440 1.14e-174 498
Msa1208670 AT5G04310.2 61.386 404 140 3 14 404 40 440 1.14e-174 498
Msa1208670 AT3G54920.1 61.499 387 124 5 29 400 37 413 1.86e-171 489
Msa1208670 AT5G55720.1 57.393 399 155 6 11 407 7 392 1.80e-165 470
Msa1208670 AT1G11920.1 62.000 350 131 2 58 407 37 384 5.70e-159 453
Msa1208670 AT1G14420.1 56.667 360 151 1 53 407 100 459 1.52e-155 447
Msa1208670 AT2G02720.1 57.983 357 145 1 56 407 99 455 2.14e-153 441
Msa1208670 AT4G22090.1 59.429 350 139 2 58 407 47 393 8.29e-153 437
Msa1208670 AT4G22080.1 58.857 350 141 2 58 407 47 393 9.88e-152 435
Msa1208670 AT5G15110.1 57.183 355 151 1 54 407 118 472 2.87e-149 432
Msa1208670 AT3G01270.1 56.338 355 154 1 54 407 121 475 5.63e-148 428
Msa1208670 AT1G30350.1 53.234 402 152 8 7 407 2 368 1.31e-138 400
Msa1208670 AT5G09280.1 48.062 258 131 3 91 347 6 261 8.16e-77 240
Msa1208670 AT3G55140.1 38.127 299 157 8 77 374 16 287 1.76e-48 168
Msa1208670 AT3G09540.1 37.801 291 149 9 75 361 61 323 1.06e-42 154
Msa1208670 AT3G09540.3 37.457 291 146 10 75 361 61 319 1.62e-40 148
Msa1208670 AT3G55140.2 37.121 264 143 7 112 374 22 263 3.53e-40 145
Msa1208670 AT3G09540.2 35.772 246 132 6 75 319 61 281 2.26e-35 132

Find 128 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGTTGTTAATCTCTT+TGG 0.204884 8_1:+66887394 Msa1208670:three_prime_UTR
AATTAATTAATTATAGAATA+TGG 0.215022 8_1:+66887249 Msa1208670:three_prime_UTR
GTTTGGTTTGGTCATTTCTT+TGG 0.215949 8_1:+66887271 Msa1208670:three_prime_UTR
CATCCTTTCCATTCACCTTC+TGG 0.229620 8_1:-66886930 None:intergenic
GGTTGTAGTTGTCATGTTTA+AGG 0.241272 8_1:-66885218 None:intergenic
GAGATCAGAAGGGGATTTAT+TGG 0.252599 8_1:+66886959 Msa1208670:CDS
GAAGGGGATTTATTGGTAAA+TGG 0.271139 8_1:+66886966 Msa1208670:CDS
CCATGATAAAGTTATGCTTT+TGG 0.272991 8_1:+66886187 Msa1208670:CDS
ACTTCTTGTGTAACCAAATC+AGG 0.275225 8_1:-66885310 None:intergenic
AGGGACTCCCCAGGACATTA+TGG 0.275653 8_1:+66886011 Msa1208670:CDS
ATCTACGTCGTAACAGATTC+TGG 0.307127 8_1:+66885726 Msa1208670:CDS
AAACGAAGGGTACCGGGTTT+TGG 0.308930 8_1:-66885768 None:intergenic
AATTCATTCAAGACCATTGA+TGG 0.310571 8_1:+66885870 Msa1208670:CDS
AAGGAAGAAGAGTGAGGAAT+TGG 0.316047 8_1:-66885239 None:intergenic
TGATTCAAGACGAACCATTA+TGG 0.319794 8_1:+66885796 Msa1208670:CDS
AGACTAGCAGATTGTGCAAT+TGG 0.327645 8_1:+66885666 Msa1208670:CDS
AAAATTATTGATATTGGTAT+TGG 0.335285 8_1:+66887478 Msa1208670:three_prime_UTR
TGGTTACACAAGAAGTTAAC+AGG 0.337713 8_1:+66885317 Msa1208670:CDS
ACCTCTTCAAGACCCTGATT+TGG 0.354799 8_1:+66885297 Msa1208670:CDS
CACCTCCAACAATCATCAAT+TGG 0.361226 8_1:-66885615 None:intergenic
GGTGATGGTGTTTCAATCTT+TGG 0.361315 8_1:+66886053 Msa1208670:CDS
TCTGTTTCCTTGGCTATTGA+TGG 0.363689 8_1:-66886671 None:intergenic
CACTGGGAAATGTATGCTAT+TGG 0.369377 8_1:+66886631 Msa1208670:CDS
TCTTTGGTGGAAGTCATGTT+TGG 0.372613 8_1:+66886069 Msa1208670:CDS
CTTTGGTGGAAGTCATGTTT+GGG 0.384354 8_1:+66886070 Msa1208670:CDS
CTCTTTAGCTAGGAGAAACT+TGG 0.387502 8_1:+66885566 Msa1208670:CDS
GTCATGTTTAAGGTTGTAAA+GGG 0.399072 8_1:-66885208 None:intergenic
CTTGCAAAGATTATCCATAA+TGG 0.404999 8_1:-66885810 None:intergenic
TTATAGAATATGGTTTGGTT+TGG 0.407768 8_1:+66887259 Msa1208670:three_prime_UTR
GGTTTGATTGATGCTATTCA+TGG 0.410643 8_1:+66886125 Msa1208670:CDS
GTTGGAGGTGTGACCCAAAC+TGG 0.411442 8_1:+66885628 Msa1208670:CDS
GGAGCTAGTGTTCACATTGC+TGG 0.411776 8_1:+66885897 Msa1208670:CDS
CTCTTTGCTGAATCTGTCAT+CGG 0.413264 8_1:-66886704 None:intergenic
GTGAATGGAAAGGATGGAAT+TGG 0.414525 8_1:+66886937 Msa1208670:CDS
ATTAATTATAGAATATGGTT+TGG 0.414962 8_1:+66887254 Msa1208670:three_prime_UTR
TGTCATGTTTAAGGTTGTAA+AGG 0.430838 8_1:-66885209 None:intergenic
TTAATTCAAGGGAGGGAAGT+TGG 0.436601 8_1:+66887177 Msa1208670:three_prime_UTR
TTCTCCACCCATAATGTCCT+GGG 0.438364 8_1:-66886019 None:intergenic
TCTTTGCTGAATCTGTCATC+GGG 0.444567 8_1:-66886703 None:intergenic
GACTAGCAGATTGTGCAATT+GGG 0.446577 8_1:+66885667 Msa1208670:CDS
ACGACTGGTGCTGGTGTACT+TGG 0.447068 8_1:+66887086 Msa1208670:CDS
GTTCTCCACCCATAATGTCC+TGG 0.462926 8_1:-66886020 None:intergenic
GCAGATTGTGCAATTGGGTT+CGG 0.464118 8_1:+66885672 Msa1208670:CDS
GGGCTACAAATCTGTTTCCT+TGG 0.465553 8_1:-66886681 None:intergenic
GGGACTCCCCAGGACATTAT+GGG 0.466397 8_1:+66886012 Msa1208670:CDS
CAGGCTGGTCAATTAATTCA+AGG 0.466623 8_1:+66887165 Msa1208670:three_prime_UTR
GAAACCCAATTGATGATTGT+TGG 0.470361 8_1:+66885610 Msa1208670:CDS
TTTCCTTGGCTATTGATGGT+AGG 0.471059 8_1:-66886667 None:intergenic
GTTTGGTCATTTCTTTGGCT+AGG 0.479126 8_1:+66887276 Msa1208670:three_prime_UTR
AGATTCTGGTGACGACGATC+CGG 0.480462 8_1:+66885740 Msa1208670:CDS
ACCTCCAACAATCATCAATT+GGG 0.481818 8_1:-66885614 None:intergenic
CACGGCGAAACGAAGGGTAC+CGG 0.485957 8_1:-66885775 None:intergenic
TCTTTGTCTAACTGTAATGA+TGG 0.487158 8_1:+66886104 Msa1208670:CDS
GGTGTACTTGGTTGTAAGAA+AGG 0.495383 8_1:+66887098 Msa1208670:CDS
GATGCTCCTCCTGCTCCTGA+TGG 0.498131 8_1:-66887002 None:intergenic
TAAACAATGACTATACTCAC+TGG 0.505124 8_1:+66886614 Msa1208670:CDS
AGGATGCGCCAGAAGGTGAA+TGG 0.512208 8_1:+66886922 Msa1208670:CDS
TTCAAGACCATTGATGGAAG+AGG 0.512334 8_1:+66885876 Msa1208670:CDS
GGGTACCTCTCATGTGGAAG+TGG 0.513126 8_1:+66885588 Msa1208670:CDS
GAGACAGTTGTTTGCTCGAG+GGG 0.513260 8_1:-66887140 None:intergenic
CAGAGACAGTTGTTTGCTCG+AGG 0.519988 8_1:-66887142 None:intergenic
ACTAGCTCCTCTTCCATCAA+TGG 0.520452 8_1:-66885883 None:intergenic
GGATGGAATTGGAGATCAGA+AGG 0.522837 8_1:+66886948 Msa1208670:CDS
AAATCAATGGCTCTTTAGCT+AGG 0.524502 8_1:+66885556 Msa1208670:CDS
TGGGAAATGTATGCTATTGG+AGG 0.524720 8_1:+66886634 Msa1208670:CDS
GAGCAAACAACTGTCTCTGC+AGG 0.526167 8_1:+66887146 Msa1208670:three_prime_UTR
CCAAAAGCATAACTTTATCA+TGG 0.527550 8_1:-66886187 None:intergenic
CATATACATGATTGTAAACA+AGG 0.532097 8_1:+66885972 Msa1208670:CDS
GCAAGACCATCTTCTCTAGT+TGG 0.537015 8_1:+66887056 Msa1208670:CDS
GTTTGATTGATGCTATTCAT+GGG 0.537333 8_1:+66886126 Msa1208670:CDS
CCAAAGAGATTAACAACTAG+AGG 0.538229 8_1:-66887394 None:intergenic
TAATGGTTCGTCTTGAATCA+CGG 0.543141 8_1:-66885793 None:intergenic
CTTGAATCACGGCGAAACGA+AGG 0.545050 8_1:-66885782 None:intergenic
TCTTTAGCTAGGAGAAACTT+GGG 0.545580 8_1:+66885567 Msa1208670:CDS
ATTGTACCAACTAGAGAAGA+TGG 0.548453 8_1:-66887062 None:intergenic
AGAGACAGTTGTTTGCTCGA+GGG 0.550545 8_1:-66887141 None:intergenic
GGGTTCGGTAAGAATGCCAT+TGG 0.551684 8_1:+66885687 Msa1208670:CDS
AGAGAGAAGGAAGAAGAGTG+AGG 0.555094 8_1:-66885245 None:intergenic
ACATACTGAATTGTAATACA+TGG 0.557374 8_1:-66885924 None:intergenic
AAACAACTGTCTCTGCAGGC+TGG 0.561868 8_1:+66887150 Msa1208670:three_prime_UTR
GTTAGAGATGGTAATTGCAG+TGG 0.564291 8_1:-66886150 None:intergenic
CTTCTTGTGTAACCAAATCA+GGG 0.566684 8_1:-66885309 None:intergenic
TTCGGTAAGAATGCCATTGG+TGG 0.570130 8_1:+66885690 Msa1208670:CDS
GTGACTAATGTTATAATACA+TGG 0.574654 8_1:+66885945 Msa1208670:CDS
TGGTGGAAGTCATGTTTGGG+TGG 0.575416 8_1:+66886073 Msa1208670:CDS
TACATGATTGTAAACAAGGT+GGG 0.575537 8_1:+66885976 Msa1208670:CDS
AGTCATATAATTGTTAGAGA+TGG 0.575991 8_1:-66886162 None:intergenic
TTGAATCACGGCGAAACGAA+GGG 0.577749 8_1:-66885781 None:intergenic
GATGGTGTTTCAATCTTTGG+TGG 0.582213 8_1:+66886056 Msa1208670:CDS
AGGTGGGAATGCCATGGTGA+GGG 0.586721 8_1:+66885992 Msa1208670:CDS
ACCTTGGCATTCTTTGAACA+AGG 0.589280 8_1:-66886280 None:intergenic
GGTTTCCACTTCCACATGAG+AGG 0.590368 8_1:-66885593 None:intergenic
AAACAATGACTATACTCACT+GGG 0.594536 8_1:+66886615 Msa1208670:CDS
GGTACAATAACGACTGGTGC+TGG 0.596299 8_1:+66887077 Msa1208670:CDS
GATGGAATTGGAGATCAGAA+GGG 0.598901 8_1:+66886949 Msa1208670:CDS
CGATGACAGATTCAGCAAAG+AGG 0.599514 8_1:+66886705 Msa1208670:CDS
ATGGTTTGCAGGTGTAGGCA+TGG 0.600072 8_1:+66886577 Msa1208670:intron
CTAGTTGGTACAATAACGAC+TGG 0.602596 8_1:+66887071 Msa1208670:CDS
GCTAGTGTTCACATTGCTGG+TGG 0.603604 8_1:+66885900 Msa1208670:CDS
AATCCTACCATCAATAGCCA+AGG 0.603716 8_1:+66886664 Msa1208670:CDS
ATGGAATTGGAGATCAGAAG+GGG 0.604249 8_1:+66886950 Msa1208670:CDS
TTTACACCATCAGGAGCAGG+AGG 0.609904 8_1:+66886996 Msa1208670:CDS
CAGAAGGTGAATGGAAAGGA+TGG 0.613208 8_1:+66886931 Msa1208670:CDS
ACCCAATTGATGATTGTTGG+AGG 0.614236 8_1:+66885613 Msa1208670:CDS
TGGTCAATTAATTCAAGGGA+GGG 0.614509 8_1:+66887170 Msa1208670:three_prime_UTR
AGGCTGGTCAATTAATTCAA+GGG 0.615208 8_1:+66887166 Msa1208670:three_prime_UTR
AGGGTCTTGAAGAGGTGAAG+AGG 0.616881 8_1:-66885290 None:intergenic
ACCAAATCAGGGTCTTGAAG+AGG 0.622034 8_1:-66885298 None:intergenic
AACTTGGGGTACCTCTCATG+TGG 0.622347 8_1:+66885582 Msa1208670:CDS
CTTTGCTGAATCTGTCATCG+GGG 0.624770 8_1:-66886702 None:intergenic
GCGCCAGAAGGTGAATGGAA+AGG 0.624970 8_1:+66886927 Msa1208670:CDS
AAGCACGAGGATGCGCCAGA+AGG 0.627072 8_1:+66886915 Msa1208670:CDS
AAGGTGGGAATGCCATGGTG+AGG 0.634971 8_1:+66885991 Msa1208670:CDS
ATTGTAGGAAGAAAGTAACA+TGG 0.636622 8_1:-66887316 None:intergenic
CTGGTCAATTAATTCAAGGG+AGG 0.645239 8_1:+66887169 Msa1208670:three_prime_UTR
GATCCGGTGACACCAAAACC+CGG 0.648661 8_1:+66885756 Msa1208670:CDS
AGAACAGTATCAGACGGTGA+TGG 0.653341 8_1:+66886038 Msa1208670:CDS
TCTCCACCCATAATGTCCTG+GGG 0.654071 8_1:-66886018 None:intergenic
GATAATCTTTGCAAGAGACA+TGG 0.658003 8_1:+66885818 Msa1208670:CDS
ACTCCCCAGGACATTATGGG+TGG 0.660040 8_1:+66886015 Msa1208670:CDS
TTGGAGGTGTGACCCAAACT+GGG 0.660140 8_1:+66885629 Msa1208670:CDS
TCCTGGGGAGTCCCTCACCA+TGG 0.666445 8_1:-66886003 None:intergenic
TTTGCTGAATCTGTCATCGG+GGG 0.676835 8_1:-66886701 None:intergenic
GGGTGGAGAACAGTATCAGA+CGG 0.677252 8_1:+66886032 Msa1208670:CDS
ATACATGATTGTAAACAAGG+TGG 0.686460 8_1:+66885975 Msa1208670:CDS
CTTTAGCTAGGAGAAACTTG+GGG 0.690368 8_1:+66885568 Msa1208670:CDS
TAAACAAGGTGGGAATGCCA+TGG 0.700137 8_1:+66885986 Msa1208670:CDS
GCCTTGTTCAAAGAATGCCA+AGG 0.701595 8_1:+66886279 Msa1208670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAAAAAGATAAA+CGG + chr8_1:66886385-66886404 Msa1208670:intron 10.0%
!! TATTGAAAAATTATTGATAT+TGG + chr8_1:66887472-66887491 Msa1208670:three_prime_UTR 10.0%
!! AAAAAAAGAAAAAAGATAAA+CGG + chr8_1:66886385-66886404 Msa1208670:intron 10.0%
!! TATTGAAAAATTATTGATAT+TGG + chr8_1:66887472-66887491 Msa1208670:three_prime_UTR 10.0%
!! GAAAAAATAATAATTAGCTA+GGG - chr8_1:66885375-66885394 None:intergenic 15.0%
!! AGAAAAAATAATAATTAGCT+AGG - chr8_1:66885376-66885395 None:intergenic 15.0%
!!! TTTTTGTTTATAATACTAGA+GGG - chr8_1:66885463-66885482 None:intergenic 15.0%
!!! ATTTTTGTTTATAATACTAG+AGG - chr8_1:66885464-66885483 None:intergenic 15.0%
!!! GTTTATCTTTTTTCTTTTTT+TGG - chr8_1:66886386-66886405 None:intergenic 15.0%
!! AAAAAAGAAAAAAGATAAAC+GGG + chr8_1:66886386-66886405 Msa1208670:intron 15.0%
!!! AATACATCAAATGATTTTAA+CGG + chr8_1:66886776-66886795 Msa1208670:intron 15.0%
!! ATTAATTATAGAATATGGTT+TGG + chr8_1:66887254-66887273 Msa1208670:three_prime_UTR 15.0%
!! AATCCAAAAATAAAAATTGT+AGG - chr8_1:66887334-66887353 None:intergenic 15.0%
!! AAAATTATTGATATTGGTAT+TGG + chr8_1:66887478-66887497 Msa1208670:three_prime_UTR 15.0%
!! GAAAAAATAATAATTAGCTA+GGG - chr8_1:66885375-66885394 None:intergenic 15.0%
!! AGAAAAAATAATAATTAGCT+AGG - chr8_1:66885376-66885395 None:intergenic 15.0%
!!! TTTTTGTTTATAATACTAGA+GGG - chr8_1:66885463-66885482 None:intergenic 15.0%
!!! ATTTTTGTTTATAATACTAG+AGG - chr8_1:66885464-66885483 None:intergenic 15.0%
!!! GTTTATCTTTTTTCTTTTTT+TGG - chr8_1:66886386-66886405 None:intergenic 15.0%
!! AAAAAAGAAAAAAGATAAAC+GGG + chr8_1:66886386-66886405 Msa1208670:intron 15.0%
!!! AATACATCAAATGATTTTAA+CGG + chr8_1:66886776-66886795 Msa1208670:intron 15.0%
!! ATTAATTATAGAATATGGTT+TGG + chr8_1:66887254-66887273 Msa1208670:three_prime_UTR 15.0%
!! AATCCAAAAATAAAAATTGT+AGG - chr8_1:66887334-66887353 None:intergenic 15.0%
!!! CTTTTTTCTTTTTTTGGAAA+TGG - chr8_1:66886380-66886399 None:intergenic 20.0%
!!! TAATTAGTGTTTTCAGTATA+TGG + chr8_1:66886509-66886528 Msa1208670:intron 20.0%
!!! AATTAGTGTTTTCAGTATAT+GGG + chr8_1:66886510-66886529 Msa1208670:intron 20.0%
!! AATTAGAAAAACATATGTGA+TGG + chr8_1:66886558-66886577 Msa1208670:intron 20.0%
!!! CTTCCTACAATTTTTATTTT+TGG + chr8_1:66887328-66887347 Msa1208670:three_prime_UTR 20.0%
!!! CTTTTTTCTTTTTTTGGAAA+TGG - chr8_1:66886380-66886399 None:intergenic 20.0%
!!! TAATTAGTGTTTTCAGTATA+TGG + chr8_1:66886509-66886528 Msa1208670:intron 20.0%
!!! AATTAGTGTTTTCAGTATAT+GGG + chr8_1:66886510-66886529 Msa1208670:intron 20.0%
!! AATTAGAAAAACATATGTGA+TGG + chr8_1:66886558-66886577 Msa1208670:intron 20.0%
!!! CTTCCTACAATTTTTATTTT+TGG + chr8_1:66887328-66887347 Msa1208670:three_prime_UTR 20.0%
! ATTTGTATGTTAAGCTAGTT+TGG - chr8_1:66885346-66885365 None:intergenic 25.0%
!!! ATAGTAAAGTATTTTTCTGC+AGG + chr8_1:66885532-66885551 Msa1208670:intron 25.0%
! ACATACTGAATTGTAATACA+TGG - chr8_1:66885927-66885946 None:intergenic 25.0%
! GTGACTAATGTTATAATACA+TGG + chr8_1:66885945-66885964 Msa1208670:CDS 25.0%
! CATATACATGATTGTAAACA+AGG + chr8_1:66885972-66885991 Msa1208670:CDS 25.0%
! AGTCATATAATTGTTAGAGA+TGG - chr8_1:66886165-66886184 None:intergenic 25.0%
!! CATGATAAAGTTATGCTTTT+GGG + chr8_1:66886188-66886207 Msa1208670:CDS 25.0%
!!! ACTATTGCTTTTAATCACTT+TGG + chr8_1:66886251-66886270 Msa1208670:CDS 25.0%
! AAAGTAGTATATGATTACCT+TGG - chr8_1:66886299-66886318 None:intergenic 25.0%
!! ATTAGTGTTTTCAGTATATG+GGG + chr8_1:66886511-66886530 Msa1208670:intron 25.0%
! ACATCAAATGTATATGTGTA+CGG + chr8_1:66886840-66886859 Msa1208670:intron 25.0%
!! AGACGTTGAATTATTGTTTT+AGG + chr8_1:66886887-66886906 Msa1208670:intron 25.0%
!!! TTATAGAATATGGTTTGGTT+TGG + chr8_1:66887259-66887278 Msa1208670:three_prime_UTR 25.0%
! ATTTGTATGTTAAGCTAGTT+TGG - chr8_1:66885346-66885365 None:intergenic 25.0%
!!! ATAGTAAAGTATTTTTCTGC+AGG + chr8_1:66885532-66885551 Msa1208670:intron 25.0%
! ACATACTGAATTGTAATACA+TGG - chr8_1:66885927-66885946 None:intergenic 25.0%
! GTGACTAATGTTATAATACA+TGG + chr8_1:66885945-66885964 Msa1208670:CDS 25.0%
! CATATACATGATTGTAAACA+AGG + chr8_1:66885972-66885991 Msa1208670:CDS 25.0%
! AGTCATATAATTGTTAGAGA+TGG - chr8_1:66886165-66886184 None:intergenic 25.0%
!! CATGATAAAGTTATGCTTTT+GGG + chr8_1:66886188-66886207 Msa1208670:CDS 25.0%
!!! ACTATTGCTTTTAATCACTT+TGG + chr8_1:66886251-66886270 Msa1208670:CDS 25.0%
! AAAGTAGTATATGATTACCT+TGG - chr8_1:66886299-66886318 None:intergenic 25.0%
!! ATTAGTGTTTTCAGTATATG+GGG + chr8_1:66886511-66886530 Msa1208670:intron 25.0%
! ACATCAAATGTATATGTGTA+CGG + chr8_1:66886840-66886859 Msa1208670:intron 25.0%
!! AGACGTTGAATTATTGTTTT+AGG + chr8_1:66886887-66886906 Msa1208670:intron 25.0%
!!! TTATAGAATATGGTTTGGTT+TGG + chr8_1:66887259-66887278 Msa1208670:three_prime_UTR 25.0%
! GTCATGTTTAAGGTTGTAAA+GGG - chr8_1:66885211-66885230 None:intergenic 30.0%
! TGTCATGTTTAAGGTTGTAA+AGG - chr8_1:66885212-66885231 None:intergenic 30.0%
! TTTTTCTGCAGGAAAATCAA+TGG + chr8_1:66885543-66885562 Msa1208670:intron 30.0%
!! TTTACCATTTTTACCACCAA+TGG - chr8_1:66885706-66885725 None:intergenic 30.0%
CTTGCAAAGATTATCCATAA+TGG - chr8_1:66885813-66885832 None:intergenic 30.0%
AATTCATTCAAGACCATTGA+TGG + chr8_1:66885870-66885889 Msa1208670:CDS 30.0%
ATACATGATTGTAAACAAGG+TGG + chr8_1:66885975-66885994 Msa1208670:CDS 30.0%
TACATGATTGTAAACAAGGT+GGG + chr8_1:66885976-66885995 Msa1208670:CDS 30.0%
TCTTTGTCTAACTGTAATGA+TGG + chr8_1:66886104-66886123 Msa1208670:CDS 30.0%
GTTTGATTGATGCTATTCAT+GGG + chr8_1:66886126-66886145 Msa1208670:CDS 30.0%
! CCAAAAGCATAACTTTATCA+TGG - chr8_1:66886190-66886209 None:intergenic 30.0%
! CCATGATAAAGTTATGCTTT+TGG + chr8_1:66886187-66886206 Msa1208670:CDS 30.0%
! ATAAACGGGTTTATGAAAAG+TGG + chr8_1:66886400-66886419 Msa1208670:intron 30.0%
! TAAACGGGTTTATGAAAAGT+GGG + chr8_1:66886401-66886420 Msa1208670:intron 30.0%
GTTTATGAAAAGTGGGAAAA+GGG + chr8_1:66886408-66886427 Msa1208670:intron 30.0%
TTTATGAAAAGTGGGAAAAG+GGG + chr8_1:66886409-66886428 Msa1208670:intron 30.0%
AGTGTAGAAATCAATGTGTA+TGG + chr8_1:66886454-66886473 Msa1208670:intron 30.0%
GTGTAGAAATCAATGTGTAT+GGG + chr8_1:66886455-66886474 Msa1208670:intron 30.0%
TAAACAATGACTATACTCAC+TGG + chr8_1:66886614-66886633 Msa1208670:CDS 30.0%
AAACAATGACTATACTCACT+GGG + chr8_1:66886615-66886634 Msa1208670:CDS 30.0%
ATTGTAGGAAGAAAGTAACA+TGG - chr8_1:66887319-66887338 None:intergenic 30.0%
! GTCATGTTTAAGGTTGTAAA+GGG - chr8_1:66885211-66885230 None:intergenic 30.0%
! TGTCATGTTTAAGGTTGTAA+AGG - chr8_1:66885212-66885231 None:intergenic 30.0%
! TTTTTCTGCAGGAAAATCAA+TGG + chr8_1:66885543-66885562 Msa1208670:intron 30.0%
!! TTTACCATTTTTACCACCAA+TGG - chr8_1:66885706-66885725 None:intergenic 30.0%
CTTGCAAAGATTATCCATAA+TGG - chr8_1:66885813-66885832 None:intergenic 30.0%
AATTCATTCAAGACCATTGA+TGG + chr8_1:66885870-66885889 Msa1208670:CDS 30.0%
ATACATGATTGTAAACAAGG+TGG + chr8_1:66885975-66885994 Msa1208670:CDS 30.0%
TACATGATTGTAAACAAGGT+GGG + chr8_1:66885976-66885995 Msa1208670:CDS 30.0%
TCTTTGTCTAACTGTAATGA+TGG + chr8_1:66886104-66886123 Msa1208670:CDS 30.0%
GTTTGATTGATGCTATTCAT+GGG + chr8_1:66886126-66886145 Msa1208670:CDS 30.0%
! CCAAAAGCATAACTTTATCA+TGG - chr8_1:66886190-66886209 None:intergenic 30.0%
! CCATGATAAAGTTATGCTTT+TGG + chr8_1:66886187-66886206 Msa1208670:CDS 30.0%
! ATAAACGGGTTTATGAAAAG+TGG + chr8_1:66886400-66886419 Msa1208670:intron 30.0%
! TAAACGGGTTTATGAAAAGT+GGG + chr8_1:66886401-66886420 Msa1208670:intron 30.0%
GTTTATGAAAAGTGGGAAAA+GGG + chr8_1:66886408-66886427 Msa1208670:intron 30.0%
TTTATGAAAAGTGGGAAAAG+GGG + chr8_1:66886409-66886428 Msa1208670:intron 30.0%
AGTGTAGAAATCAATGTGTA+TGG + chr8_1:66886454-66886473 Msa1208670:intron 30.0%
GTGTAGAAATCAATGTGTAT+GGG + chr8_1:66886455-66886474 Msa1208670:intron 30.0%
TAAACAATGACTATACTCAC+TGG + chr8_1:66886614-66886633 Msa1208670:CDS 30.0%
AAACAATGACTATACTCACT+GGG + chr8_1:66886615-66886634 Msa1208670:CDS 30.0%
ATTGTAGGAAGAAAGTAACA+TGG - chr8_1:66887319-66887338 None:intergenic 30.0%
GGTTGTAGTTGTCATGTTTA+AGG - chr8_1:66885221-66885240 None:intergenic 35.0%
AGGAAATGAGAGAAAAAGTG+AGG - chr8_1:66885273-66885292 None:intergenic 35.0%
CTTCTTGTGTAACCAAATCA+GGG - chr8_1:66885312-66885331 None:intergenic 35.0%
ACTTCTTGTGTAACCAAATC+AGG - chr8_1:66885313-66885332 None:intergenic 35.0%
TGGTTACACAAGAAGTTAAC+AGG + chr8_1:66885317-66885336 Msa1208670:CDS 35.0%
AAATCAATGGCTCTTTAGCT+AGG + chr8_1:66885556-66885575 Msa1208670:CDS 35.0%
TCTTTAGCTAGGAGAAACTT+GGG + chr8_1:66885567-66885586 Msa1208670:CDS 35.0%
! GAAACCCAATTGATGATTGT+TGG + chr8_1:66885610-66885629 Msa1208670:CDS 35.0%
ACCTCCAACAATCATCAATT+GGG - chr8_1:66885617-66885636 None:intergenic 35.0%
!!! GTCTGTTTTTTTCCCAGTTT+GGG - chr8_1:66885644-66885663 None:intergenic 35.0%
!!! TGTCTGTTTTTTTCCCAGTT+TGG - chr8_1:66885645-66885664 None:intergenic 35.0%
! AATGCCATTGGTGGTAAAAA+TGG + chr8_1:66885699-66885718 Msa1208670:CDS 35.0%
TAATGGTTCGTCTTGAATCA+CGG - chr8_1:66885796-66885815 None:intergenic 35.0%
TGATTCAAGACGAACCATTA+TGG + chr8_1:66885796-66885815 Msa1208670:CDS 35.0%
GATAATCTTTGCAAGAGACA+TGG + chr8_1:66885818-66885837 Msa1208670:CDS 35.0%
GGTTTGATTGATGCTATTCA+TGG + chr8_1:66886125-66886144 Msa1208670:CDS 35.0%
! GCTTTTAATCACTTTGGTGA+AGG + chr8_1:66886257-66886276 Msa1208670:CDS 35.0%
GGTTTATGAAAAGTGGGAAA+AGG + chr8_1:66886407-66886426 Msa1208670:intron 35.0%
TTATGAAAAGTGGGAAAAGG+GGG + chr8_1:66886410-66886429 Msa1208670:intron 35.0%
! AAACATATGTGATGGTTTGC+AGG + chr8_1:66886566-66886585 Msa1208670:intron 35.0%
GAAGGGGATTTATTGGTAAA+TGG + chr8_1:66886966-66886985 Msa1208670:CDS 35.0%
ATTGTACCAACTAGAGAAGA+TGG - chr8_1:66887065-66887084 None:intergenic 35.0%
! AGGCTGGTCAATTAATTCAA+GGG + chr8_1:66887166-66887185 Msa1208670:three_prime_UTR 35.0%
TGGTCAATTAATTCAAGGGA+GGG + chr8_1:66887170-66887189 Msa1208670:three_prime_UTR 35.0%
!! GTTTGGTTTGGTCATTTCTT+TGG + chr8_1:66887271-66887290 Msa1208670:three_prime_UTR 35.0%
CCAAAGAGATTAACAACTAG+AGG - chr8_1:66887397-66887416 None:intergenic 35.0%
CCTCTAGTTGTTAATCTCTT+TGG + chr8_1:66887394-66887413 Msa1208670:three_prime_UTR 35.0%
! CTTCTGCAATTGTTTTCTCT+TGG - chr8_1:66887441-66887460 None:intergenic 35.0%
GGTTGTAGTTGTCATGTTTA+AGG - chr8_1:66885221-66885240 None:intergenic 35.0%
AGGAAATGAGAGAAAAAGTG+AGG - chr8_1:66885273-66885292 None:intergenic 35.0%
CTTCTTGTGTAACCAAATCA+GGG - chr8_1:66885312-66885331 None:intergenic 35.0%
ACTTCTTGTGTAACCAAATC+AGG - chr8_1:66885313-66885332 None:intergenic 35.0%
TGGTTACACAAGAAGTTAAC+AGG + chr8_1:66885317-66885336 Msa1208670:CDS 35.0%
AAATCAATGGCTCTTTAGCT+AGG + chr8_1:66885556-66885575 Msa1208670:CDS 35.0%
TCTTTAGCTAGGAGAAACTT+GGG + chr8_1:66885567-66885586 Msa1208670:CDS 35.0%
! GAAACCCAATTGATGATTGT+TGG + chr8_1:66885610-66885629 Msa1208670:CDS 35.0%
ACCTCCAACAATCATCAATT+GGG - chr8_1:66885617-66885636 None:intergenic 35.0%
!!! GTCTGTTTTTTTCCCAGTTT+GGG - chr8_1:66885644-66885663 None:intergenic 35.0%
!!! TGTCTGTTTTTTTCCCAGTT+TGG - chr8_1:66885645-66885664 None:intergenic 35.0%
! AATGCCATTGGTGGTAAAAA+TGG + chr8_1:66885699-66885718 Msa1208670:CDS 35.0%
TAATGGTTCGTCTTGAATCA+CGG - chr8_1:66885796-66885815 None:intergenic 35.0%
TGATTCAAGACGAACCATTA+TGG + chr8_1:66885796-66885815 Msa1208670:CDS 35.0%
GATAATCTTTGCAAGAGACA+TGG + chr8_1:66885818-66885837 Msa1208670:CDS 35.0%
GGTTTGATTGATGCTATTCA+TGG + chr8_1:66886125-66886144 Msa1208670:CDS 35.0%
! GCTTTTAATCACTTTGGTGA+AGG + chr8_1:66886257-66886276 Msa1208670:CDS 35.0%
GGTTTATGAAAAGTGGGAAA+AGG + chr8_1:66886407-66886426 Msa1208670:intron 35.0%
TTATGAAAAGTGGGAAAAGG+GGG + chr8_1:66886410-66886429 Msa1208670:intron 35.0%
! AAACATATGTGATGGTTTGC+AGG + chr8_1:66886566-66886585 Msa1208670:intron 35.0%
GAAGGGGATTTATTGGTAAA+TGG + chr8_1:66886966-66886985 Msa1208670:CDS 35.0%
ATTGTACCAACTAGAGAAGA+TGG - chr8_1:66887065-66887084 None:intergenic 35.0%
! AGGCTGGTCAATTAATTCAA+GGG + chr8_1:66887166-66887185 Msa1208670:three_prime_UTR 35.0%
TGGTCAATTAATTCAAGGGA+GGG + chr8_1:66887170-66887189 Msa1208670:three_prime_UTR 35.0%
!! GTTTGGTTTGGTCATTTCTT+TGG + chr8_1:66887271-66887290 Msa1208670:three_prime_UTR 35.0%
CCAAAGAGATTAACAACTAG+AGG - chr8_1:66887397-66887416 None:intergenic 35.0%
CCTCTAGTTGTTAATCTCTT+TGG + chr8_1:66887394-66887413 Msa1208670:three_prime_UTR 35.0%
! CTTCTGCAATTGTTTTCTCT+TGG - chr8_1:66887441-66887460 None:intergenic 35.0%
AAGGAAGAAGAGTGAGGAAT+TGG - chr8_1:66885242-66885261 None:intergenic 40.0%
AAAAAGTGAGGAGAGAGAGA+AGG - chr8_1:66885261-66885280 None:intergenic 40.0%
CTCTTTAGCTAGGAGAAACT+TGG + chr8_1:66885566-66885585 Msa1208670:CDS 40.0%
CTTTAGCTAGGAGAAACTTG+GGG + chr8_1:66885568-66885587 Msa1208670:CDS 40.0%
! ACCCAATTGATGATTGTTGG+AGG + chr8_1:66885613-66885632 Msa1208670:CDS 40.0%
CACCTCCAACAATCATCAAT+TGG - chr8_1:66885618-66885637 None:intergenic 40.0%
AGACTAGCAGATTGTGCAAT+TGG + chr8_1:66885666-66885685 Msa1208670:CDS 40.0%
GACTAGCAGATTGTGCAATT+GGG + chr8_1:66885667-66885686 Msa1208670:CDS 40.0%
ATCTACGTCGTAACAGATTC+TGG + chr8_1:66885726-66885745 Msa1208670:CDS 40.0%
TTCAAGACCATTGATGGAAG+AGG + chr8_1:66885876-66885895 Msa1208670:CDS 40.0%
! GGTGATGGTGTTTCAATCTT+TGG + chr8_1:66886053-66886072 Msa1208670:CDS 40.0%
GATGGTGTTTCAATCTTTGG+TGG + chr8_1:66886056-66886075 Msa1208670:CDS 40.0%
TCTTTGGTGGAAGTCATGTT+TGG + chr8_1:66886069-66886088 Msa1208670:CDS 40.0%
CTTTGGTGGAAGTCATGTTT+GGG + chr8_1:66886070-66886089 Msa1208670:CDS 40.0%
GTTAGAGATGGTAATTGCAG+TGG - chr8_1:66886153-66886172 None:intergenic 40.0%
ACCTTGGCATTCTTTGAACA+AGG - chr8_1:66886283-66886302 None:intergenic 40.0%
!! TAGGCATGGTTATTTTCACG+TGG + chr8_1:66886591-66886610 Msa1208670:CDS 40.0%
CACTGGGAAATGTATGCTAT+TGG + chr8_1:66886631-66886650 Msa1208670:CDS 40.0%
TGGGAAATGTATGCTATTGG+AGG + chr8_1:66886634-66886653 Msa1208670:CDS 40.0%
AATCCTACCATCAATAGCCA+AGG + chr8_1:66886664-66886683 Msa1208670:CDS 40.0%
! TTTCCTTGGCTATTGATGGT+AGG - chr8_1:66886670-66886689 None:intergenic 40.0%
TCTGTTTCCTTGGCTATTGA+TGG - chr8_1:66886674-66886693 None:intergenic 40.0%
TCTTTGCTGAATCTGTCATC+GGG - chr8_1:66886706-66886725 None:intergenic 40.0%
CTCTTTGCTGAATCTGTCAT+CGG - chr8_1:66886707-66886726 None:intergenic 40.0%
GTGAATGGAAAGGATGGAAT+TGG + chr8_1:66886937-66886956 Msa1208670:CDS 40.0%
GATGGAATTGGAGATCAGAA+GGG + chr8_1:66886949-66886968 Msa1208670:CDS 40.0%
ATGGAATTGGAGATCAGAAG+GGG + chr8_1:66886950-66886969 Msa1208670:CDS 40.0%
GAGATCAGAAGGGGATTTAT+TGG + chr8_1:66886959-66886978 Msa1208670:CDS 40.0%
!!! GGTGCATTTTTTACACCATC+AGG + chr8_1:66886987-66887006 Msa1208670:CDS 40.0%
!!! TTTTTTACACCATCAGGAGC+AGG + chr8_1:66886993-66887012 Msa1208670:CDS 40.0%
! CTAGTTGGTACAATAACGAC+TGG + chr8_1:66887071-66887090 Msa1208670:CDS 40.0%
GGTGTACTTGGTTGTAAGAA+AGG + chr8_1:66887098-66887117 Msa1208670:CDS 40.0%
! CAGGCTGGTCAATTAATTCA+AGG + chr8_1:66887165-66887184 Msa1208670:three_prime_UTR 40.0%
CTGGTCAATTAATTCAAGGG+AGG + chr8_1:66887169-66887188 Msa1208670:three_prime_UTR 40.0%
TTAATTCAAGGGAGGGAAGT+TGG + chr8_1:66887177-66887196 Msa1208670:three_prime_UTR 40.0%
GTTTGGTCATTTCTTTGGCT+AGG + chr8_1:66887276-66887295 Msa1208670:three_prime_UTR 40.0%
AAGGAAGAAGAGTGAGGAAT+TGG - chr8_1:66885242-66885261 None:intergenic 40.0%
AAAAAGTGAGGAGAGAGAGA+AGG - chr8_1:66885261-66885280 None:intergenic 40.0%
CTCTTTAGCTAGGAGAAACT+TGG + chr8_1:66885566-66885585 Msa1208670:CDS 40.0%
CTTTAGCTAGGAGAAACTTG+GGG + chr8_1:66885568-66885587 Msa1208670:CDS 40.0%
! ACCCAATTGATGATTGTTGG+AGG + chr8_1:66885613-66885632 Msa1208670:CDS 40.0%
CACCTCCAACAATCATCAAT+TGG - chr8_1:66885618-66885637 None:intergenic 40.0%
AGACTAGCAGATTGTGCAAT+TGG + chr8_1:66885666-66885685 Msa1208670:CDS 40.0%
GACTAGCAGATTGTGCAATT+GGG + chr8_1:66885667-66885686 Msa1208670:CDS 40.0%
ATCTACGTCGTAACAGATTC+TGG + chr8_1:66885726-66885745 Msa1208670:CDS 40.0%
TTCAAGACCATTGATGGAAG+AGG + chr8_1:66885876-66885895 Msa1208670:CDS 40.0%
! GGTGATGGTGTTTCAATCTT+TGG + chr8_1:66886053-66886072 Msa1208670:CDS 40.0%
GATGGTGTTTCAATCTTTGG+TGG + chr8_1:66886056-66886075 Msa1208670:CDS 40.0%
TCTTTGGTGGAAGTCATGTT+TGG + chr8_1:66886069-66886088 Msa1208670:CDS 40.0%
CTTTGGTGGAAGTCATGTTT+GGG + chr8_1:66886070-66886089 Msa1208670:CDS 40.0%
GTTAGAGATGGTAATTGCAG+TGG - chr8_1:66886153-66886172 None:intergenic 40.0%
ACCTTGGCATTCTTTGAACA+AGG - chr8_1:66886283-66886302 None:intergenic 40.0%
!! TAGGCATGGTTATTTTCACG+TGG + chr8_1:66886591-66886610 Msa1208670:CDS 40.0%
CACTGGGAAATGTATGCTAT+TGG + chr8_1:66886631-66886650 Msa1208670:CDS 40.0%
TGGGAAATGTATGCTATTGG+AGG + chr8_1:66886634-66886653 Msa1208670:CDS 40.0%
AATCCTACCATCAATAGCCA+AGG + chr8_1:66886664-66886683 Msa1208670:CDS 40.0%
! TTTCCTTGGCTATTGATGGT+AGG - chr8_1:66886670-66886689 None:intergenic 40.0%
TCTGTTTCCTTGGCTATTGA+TGG - chr8_1:66886674-66886693 None:intergenic 40.0%
TCTTTGCTGAATCTGTCATC+GGG - chr8_1:66886706-66886725 None:intergenic 40.0%
CTCTTTGCTGAATCTGTCAT+CGG - chr8_1:66886707-66886726 None:intergenic 40.0%
GTGAATGGAAAGGATGGAAT+TGG + chr8_1:66886937-66886956 Msa1208670:CDS 40.0%
GATGGAATTGGAGATCAGAA+GGG + chr8_1:66886949-66886968 Msa1208670:CDS 40.0%
ATGGAATTGGAGATCAGAAG+GGG + chr8_1:66886950-66886969 Msa1208670:CDS 40.0%
GAGATCAGAAGGGGATTTAT+TGG + chr8_1:66886959-66886978 Msa1208670:CDS 40.0%
!!! GGTGCATTTTTTACACCATC+AGG + chr8_1:66886987-66887006 Msa1208670:CDS 40.0%
!!! TTTTTTACACCATCAGGAGC+AGG + chr8_1:66886993-66887012 Msa1208670:CDS 40.0%
! CTAGTTGGTACAATAACGAC+TGG + chr8_1:66887071-66887090 Msa1208670:CDS 40.0%
GGTGTACTTGGTTGTAAGAA+AGG + chr8_1:66887098-66887117 Msa1208670:CDS 40.0%
! CAGGCTGGTCAATTAATTCA+AGG + chr8_1:66887165-66887184 Msa1208670:three_prime_UTR 40.0%
CTGGTCAATTAATTCAAGGG+AGG + chr8_1:66887169-66887188 Msa1208670:three_prime_UTR 40.0%
TTAATTCAAGGGAGGGAAGT+TGG + chr8_1:66887177-66887196 Msa1208670:three_prime_UTR 40.0%
GTTTGGTCATTTCTTTGGCT+AGG + chr8_1:66887276-66887295 Msa1208670:three_prime_UTR 40.0%
AGAGAGAAGGAAGAAGAGTG+AGG - chr8_1:66885248-66885267 None:intergenic 45.0%
ACCTCTTCAAGACCCTGATT+TGG + chr8_1:66885297-66885316 Msa1208670:CDS 45.0%
ACCAAATCAGGGTCTTGAAG+AGG - chr8_1:66885301-66885320 None:intergenic 45.0%
GCAGATTGTGCAATTGGGTT+CGG + chr8_1:66885672-66885691 Msa1208670:CDS 45.0%
TTCGGTAAGAATGCCATTGG+TGG + chr8_1:66885690-66885709 Msa1208670:CDS 45.0%
TTGAATCACGGCGAAACGAA+GGG - chr8_1:66885784-66885803 None:intergenic 45.0%
ACTAGCTCCTCTTCCATCAA+TGG - chr8_1:66885886-66885905 None:intergenic 45.0%
TAAACAAGGTGGGAATGCCA+TGG + chr8_1:66885986-66886005 Msa1208670:CDS 45.0%
TTCTCCACCCATAATGTCCT+GGG - chr8_1:66886022-66886041 None:intergenic 45.0%
AGAACAGTATCAGACGGTGA+TGG + chr8_1:66886038-66886057 Msa1208670:CDS 45.0%
! GCCTTGTTCAAAGAATGCCA+AGG + chr8_1:66886279-66886298 Msa1208670:CDS 45.0%
! ATGTGATGGTTTGCAGGTGT+AGG + chr8_1:66886572-66886591 Msa1208670:intron 45.0%
GGGCTACAAATCTGTTTCCT+TGG - chr8_1:66886684-66886703 None:intergenic 45.0%
TTTGCTGAATCTGTCATCGG+GGG - chr8_1:66886704-66886723 None:intergenic 45.0%
CTTTGCTGAATCTGTCATCG+GGG - chr8_1:66886705-66886724 None:intergenic 45.0%
CGATGACAGATTCAGCAAAG+AGG + chr8_1:66886705-66886724 Msa1208670:CDS 45.0%
!! GTTTTAGGTGACAAAGCACG+AGG + chr8_1:66886902-66886921 Msa1208670:intron 45.0%
CATCCTTTCCATTCACCTTC+TGG - chr8_1:66886933-66886952 None:intergenic 45.0%
CAGAAGGTGAATGGAAAGGA+TGG + chr8_1:66886931-66886950 Msa1208670:CDS 45.0%
GGATGGAATTGGAGATCAGA+AGG + chr8_1:66886948-66886967 Msa1208670:CDS 45.0%
GCAAGACCATCTTCTCTAGT+TGG + chr8_1:66887056-66887075 Msa1208670:CDS 45.0%
AGAGACAGTTGTTTGCTCGA+GGG - chr8_1:66887144-66887163 None:intergenic 45.0%
AGAGAGAAGGAAGAAGAGTG+AGG - chr8_1:66885248-66885267 None:intergenic 45.0%
ACCTCTTCAAGACCCTGATT+TGG + chr8_1:66885297-66885316 Msa1208670:CDS 45.0%
ACCAAATCAGGGTCTTGAAG+AGG - chr8_1:66885301-66885320 None:intergenic 45.0%
GCAGATTGTGCAATTGGGTT+CGG + chr8_1:66885672-66885691 Msa1208670:CDS 45.0%
TTCGGTAAGAATGCCATTGG+TGG + chr8_1:66885690-66885709 Msa1208670:CDS 45.0%
TTGAATCACGGCGAAACGAA+GGG - chr8_1:66885784-66885803 None:intergenic 45.0%
ACTAGCTCCTCTTCCATCAA+TGG - chr8_1:66885886-66885905 None:intergenic 45.0%
TAAACAAGGTGGGAATGCCA+TGG + chr8_1:66885986-66886005 Msa1208670:CDS 45.0%
TTCTCCACCCATAATGTCCT+GGG - chr8_1:66886022-66886041 None:intergenic 45.0%
AGAACAGTATCAGACGGTGA+TGG + chr8_1:66886038-66886057 Msa1208670:CDS 45.0%
! GCCTTGTTCAAAGAATGCCA+AGG + chr8_1:66886279-66886298 Msa1208670:CDS 45.0%
! ATGTGATGGTTTGCAGGTGT+AGG + chr8_1:66886572-66886591 Msa1208670:intron 45.0%
GGGCTACAAATCTGTTTCCT+TGG - chr8_1:66886684-66886703 None:intergenic 45.0%
TTTGCTGAATCTGTCATCGG+GGG - chr8_1:66886704-66886723 None:intergenic 45.0%
CTTTGCTGAATCTGTCATCG+GGG - chr8_1:66886705-66886724 None:intergenic 45.0%
CGATGACAGATTCAGCAAAG+AGG + chr8_1:66886705-66886724 Msa1208670:CDS 45.0%
!! GTTTTAGGTGACAAAGCACG+AGG + chr8_1:66886902-66886921 Msa1208670:intron 45.0%
CATCCTTTCCATTCACCTTC+TGG - chr8_1:66886933-66886952 None:intergenic 45.0%
CAGAAGGTGAATGGAAAGGA+TGG + chr8_1:66886931-66886950 Msa1208670:CDS 45.0%
GGATGGAATTGGAGATCAGA+AGG + chr8_1:66886948-66886967 Msa1208670:CDS 45.0%
GCAAGACCATCTTCTCTAGT+TGG + chr8_1:66887056-66887075 Msa1208670:CDS 45.0%
AGAGACAGTTGTTTGCTCGA+GGG - chr8_1:66887144-66887163 None:intergenic 45.0%
!! AATTAATTAATTATAGAATA+TGG + chr8_1:66887249-66887268 Msa1208670:three_prime_UTR 5.0%
!! AATTAATTAATTATAGAATA+TGG + chr8_1:66887249-66887268 Msa1208670:three_prime_UTR 5.0%
AGGGTCTTGAAGAGGTGAAG+AGG - chr8_1:66885293-66885312 None:intergenic 50.0%
! AACTTGGGGTACCTCTCATG+TGG + chr8_1:66885582-66885601 Msa1208670:CDS 50.0%
GGTTTCCACTTCCACATGAG+AGG - chr8_1:66885596-66885615 None:intergenic 50.0%
! TTGGAGGTGTGACCCAAACT+GGG + chr8_1:66885629-66885648 Msa1208670:CDS 50.0%
! GGGTTCGGTAAGAATGCCAT+TGG + chr8_1:66885687-66885706 Msa1208670:CDS 50.0%
! AGATTCTGGTGACGACGATC+CGG + chr8_1:66885740-66885759 Msa1208670:CDS 50.0%
!!! AAACGAAGGGTACCGGGTTT+TGG - chr8_1:66885771-66885790 None:intergenic 50.0%
CTTGAATCACGGCGAAACGA+AGG - chr8_1:66885785-66885804 None:intergenic 50.0%
GGAGCTAGTGTTCACATTGC+TGG + chr8_1:66885897-66885916 Msa1208670:CDS 50.0%
GCTAGTGTTCACATTGCTGG+TGG + chr8_1:66885900-66885919 Msa1208670:CDS 50.0%
TCTCCACCCATAATGTCCTG+GGG - chr8_1:66886021-66886040 None:intergenic 50.0%
GTTCTCCACCCATAATGTCC+TGG - chr8_1:66886023-66886042 None:intergenic 50.0%
GGGTGGAGAACAGTATCAGA+CGG + chr8_1:66886032-66886051 Msa1208670:CDS 50.0%
TGGTGGAAGTCATGTTTGGG+TGG + chr8_1:66886073-66886092 Msa1208670:CDS 50.0%
TGAAAAGTGGGAAAAGGGGG+TGG + chr8_1:66886413-66886432 Msa1208670:intron 50.0%
GAAAAGTGGGAAAAGGGGGT+GGG + chr8_1:66886414-66886433 Msa1208670:intron 50.0%
! ATGGTTTGCAGGTGTAGGCA+TGG + chr8_1:66886577-66886596 Msa1208670:intron 50.0%
TTTACACCATCAGGAGCAGG+AGG + chr8_1:66886996-66887015 Msa1208670:CDS 50.0%
GGTACAATAACGACTGGTGC+TGG + chr8_1:66887077-66887096 Msa1208670:CDS 50.0%
GAGACAGTTGTTTGCTCGAG+GGG - chr8_1:66887143-66887162 None:intergenic 50.0%
CAGAGACAGTTGTTTGCTCG+AGG - chr8_1:66887145-66887164 None:intergenic 50.0%
GAGCAAACAACTGTCTCTGC+AGG + chr8_1:66887146-66887165 Msa1208670:three_prime_UTR 50.0%
AAACAACTGTCTCTGCAGGC+TGG + chr8_1:66887150-66887169 Msa1208670:three_prime_UTR 50.0%
AGGGTCTTGAAGAGGTGAAG+AGG - chr8_1:66885293-66885312 None:intergenic 50.0%
! AACTTGGGGTACCTCTCATG+TGG + chr8_1:66885582-66885601 Msa1208670:CDS 50.0%
GGTTTCCACTTCCACATGAG+AGG - chr8_1:66885596-66885615 None:intergenic 50.0%
! TTGGAGGTGTGACCCAAACT+GGG + chr8_1:66885629-66885648 Msa1208670:CDS 50.0%
! GGGTTCGGTAAGAATGCCAT+TGG + chr8_1:66885687-66885706 Msa1208670:CDS 50.0%
! AGATTCTGGTGACGACGATC+CGG + chr8_1:66885740-66885759 Msa1208670:CDS 50.0%
!!! AAACGAAGGGTACCGGGTTT+TGG - chr8_1:66885771-66885790 None:intergenic 50.0%
CTTGAATCACGGCGAAACGA+AGG - chr8_1:66885785-66885804 None:intergenic 50.0%
GGAGCTAGTGTTCACATTGC+TGG + chr8_1:66885897-66885916 Msa1208670:CDS 50.0%
GCTAGTGTTCACATTGCTGG+TGG + chr8_1:66885900-66885919 Msa1208670:CDS 50.0%
TCTCCACCCATAATGTCCTG+GGG - chr8_1:66886021-66886040 None:intergenic 50.0%
GTTCTCCACCCATAATGTCC+TGG - chr8_1:66886023-66886042 None:intergenic 50.0%
GGGTGGAGAACAGTATCAGA+CGG + chr8_1:66886032-66886051 Msa1208670:CDS 50.0%
TGGTGGAAGTCATGTTTGGG+TGG + chr8_1:66886073-66886092 Msa1208670:CDS 50.0%
TGAAAAGTGGGAAAAGGGGG+TGG + chr8_1:66886413-66886432 Msa1208670:intron 50.0%
GAAAAGTGGGAAAAGGGGGT+GGG + chr8_1:66886414-66886433 Msa1208670:intron 50.0%
! ATGGTTTGCAGGTGTAGGCA+TGG + chr8_1:66886577-66886596 Msa1208670:intron 50.0%
TTTACACCATCAGGAGCAGG+AGG + chr8_1:66886996-66887015 Msa1208670:CDS 50.0%
GGTACAATAACGACTGGTGC+TGG + chr8_1:66887077-66887096 Msa1208670:CDS 50.0%
GAGACAGTTGTTTGCTCGAG+GGG - chr8_1:66887143-66887162 None:intergenic 50.0%
CAGAGACAGTTGTTTGCTCG+AGG - chr8_1:66887145-66887164 None:intergenic 50.0%
GAGCAAACAACTGTCTCTGC+AGG + chr8_1:66887146-66887165 Msa1208670:three_prime_UTR 50.0%
AAACAACTGTCTCTGCAGGC+TGG + chr8_1:66887150-66887169 Msa1208670:three_prime_UTR 50.0%
GGGTACCTCTCATGTGGAAG+TGG + chr8_1:66885588-66885607 Msa1208670:CDS 55.0%
! GTTGGAGGTGTGACCCAAAC+TGG + chr8_1:66885628-66885647 Msa1208670:CDS 55.0%
GATCCGGTGACACCAAAACC+CGG + chr8_1:66885756-66885775 Msa1208670:CDS 55.0%
!!! GTACCGGGTTTTGGTGTCAC+CGG - chr8_1:66885762-66885781 None:intergenic 55.0%
AAGGTGGGAATGCCATGGTG+AGG + chr8_1:66885991-66886010 Msa1208670:CDS 55.0%
AGGTGGGAATGCCATGGTGA+GGG + chr8_1:66885992-66886011 Msa1208670:CDS 55.0%
AGGGACTCCCCAGGACATTA+TGG + chr8_1:66886011-66886030 Msa1208670:CDS 55.0%
GGGACTCCCCAGGACATTAT+GGG + chr8_1:66886012-66886031 Msa1208670:CDS 55.0%
ACTCCCCAGGACATTATGGG+TGG + chr8_1:66886015-66886034 Msa1208670:CDS 55.0%
AGGATGCGCCAGAAGGTGAA+TGG + chr8_1:66886922-66886941 Msa1208670:CDS 55.0%
GCGCCAGAAGGTGAATGGAA+AGG + chr8_1:66886927-66886946 Msa1208670:CDS 55.0%
!! ACGACTGGTGCTGGTGTACT+TGG + chr8_1:66887086-66887105 Msa1208670:CDS 55.0%
GGGTACCTCTCATGTGGAAG+TGG + chr8_1:66885588-66885607 Msa1208670:CDS 55.0%
! GTTGGAGGTGTGACCCAAAC+TGG + chr8_1:66885628-66885647 Msa1208670:CDS 55.0%
GATCCGGTGACACCAAAACC+CGG + chr8_1:66885756-66885775 Msa1208670:CDS 55.0%
!!! GTACCGGGTTTTGGTGTCAC+CGG - chr8_1:66885762-66885781 None:intergenic 55.0%
AAGGTGGGAATGCCATGGTG+AGG + chr8_1:66885991-66886010 Msa1208670:CDS 55.0%
AGGTGGGAATGCCATGGTGA+GGG + chr8_1:66885992-66886011 Msa1208670:CDS 55.0%
AGGGACTCCCCAGGACATTA+TGG + chr8_1:66886011-66886030 Msa1208670:CDS 55.0%
GGGACTCCCCAGGACATTAT+GGG + chr8_1:66886012-66886031 Msa1208670:CDS 55.0%
ACTCCCCAGGACATTATGGG+TGG + chr8_1:66886015-66886034 Msa1208670:CDS 55.0%
AGGATGCGCCAGAAGGTGAA+TGG + chr8_1:66886922-66886941 Msa1208670:CDS 55.0%
GCGCCAGAAGGTGAATGGAA+AGG + chr8_1:66886927-66886946 Msa1208670:CDS 55.0%
!! ACGACTGGTGCTGGTGTACT+TGG + chr8_1:66887086-66887105 Msa1208670:CDS 55.0%
!! ACGGCGAAACGAAGGGTACC+GGG - chr8_1:66885777-66885796 None:intergenic 60.0%
! CACGGCGAAACGAAGGGTAC+CGG - chr8_1:66885778-66885797 None:intergenic 60.0%
AAGCACGAGGATGCGCCAGA+AGG + chr8_1:66886915-66886934 Msa1208670:CDS 60.0%
GATGCTCCTCCTGCTCCTGA+TGG - chr8_1:66887005-66887024 None:intergenic 60.0%
!! ACGGCGAAACGAAGGGTACC+GGG - chr8_1:66885777-66885796 None:intergenic 60.0%
! CACGGCGAAACGAAGGGTAC+CGG - chr8_1:66885778-66885797 None:intergenic 60.0%
AAGCACGAGGATGCGCCAGA+AGG + chr8_1:66886915-66886934 Msa1208670:CDS 60.0%
GATGCTCCTCCTGCTCCTGA+TGG - chr8_1:66887005-66887024 None:intergenic 60.0%
TCCTGGGGAGTCCCTCACCA+TGG - chr8_1:66886006-66886025 None:intergenic 65.0%
TCCTGGGGAGTCCCTCACCA+TGG - chr8_1:66886006-66886025 None:intergenic 65.0%
GCCATGGTGAGGGACTCCCC+AGG + chr8_1:66886002-66886021 Msa1208670:CDS 70.0%
GCCATGGTGAGGGACTCCCC+AGG + chr8_1:66886002-66886021 Msa1208670:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66885192 66887500 66885192 ID=Msa1208670;Name=Msa1208670
chr8_1 mRNA 66885192 66887500 66885192 ID=Msa1208670-mRNA-1;Parent=Msa1208670;Name=Msa1208670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=34|1|1|1|1|1|4|367|407
chr8_1 exon 66885192 66885338 66885192 ID=Msa1208670-mRNA-1:exon:21995;Parent=Msa1208670-mRNA-1
chr8_1 exon 66885554 66886300 66885554 ID=Msa1208670-mRNA-1:exon:21996;Parent=Msa1208670-mRNA-1
chr8_1 exon 66886588 66886726 66886588 ID=Msa1208670-mRNA-1:exon:21997;Parent=Msa1208670-mRNA-1
chr8_1 exon 66886909 66887500 66886909 ID=Msa1208670-mRNA-1:exon:21998;Parent=Msa1208670-mRNA-1
chr8_1 five_prime_UTR 66885192 66885225 66885192 ID=Msa1208670-mRNA-1:five_prime_utr;Parent=Msa1208670-mRNA-1
chr8_1 CDS 66885226 66885338 66885226 ID=Msa1208670-mRNA-1:cds;Parent=Msa1208670-mRNA-1
chr8_1 CDS 66885554 66886300 66885554 ID=Msa1208670-mRNA-1:cds;Parent=Msa1208670-mRNA-1
chr8_1 CDS 66886588 66886726 66886588 ID=Msa1208670-mRNA-1:cds;Parent=Msa1208670-mRNA-1
chr8_1 CDS 66886909 66887133 66886909 ID=Msa1208670-mRNA-1:cds;Parent=Msa1208670-mRNA-1
chr8_1 three_prime_UTR 66887134 66887500 66887134 ID=Msa1208670-mRNA-1:three_prime_utr;Parent=Msa1208670-mRNA-1
Gene Sequence

>Msa1208670

ATGACAACTACAACCAATTCCTCACTCTTCTTCCTTCTCTCTCTCCTCACTTTTTCTCTCATTTCCTCTTCACCTCTTCAAGACCCTGATTTGGTTACACAAGAAGTTAACAGGAAAATCAATGGCTCTTTAGCTAGGAGAAACTTGGGGTACCTCTCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGACCCAAACTGGGAAAAAAACAGACAAAGACTAGCAGATTGTGCAATTGGGTTCGGTAAGAATGCCATTGGTGGTAAAAATGGTAAAATCTACGTCGTAACAGATTCTGGTGACGACGATCCGGTGACACCAAAACCCGGTACCCTTCGTTTCGCCGTGATTCAAGACGAACCATTATGGATAATCTTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAGCTTATAATGAATTCATTCAAGACCATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGTGGTCCATGTATTACAATTCAGTATGTGACTAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGGAATGCCATGGTGAGGGACTCCCCAGGACATTATGGGTGGAGAACAGTATCAGACGGTGATGGTGTTTCAATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATTCATGGGTCCACTGCAATTACCATCTCTAACAATTATATGACTCACCATGATAAAGTTATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGTTATTTTCACGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCTACCATCAATAGCCAAGGAAACAGATTTGTAGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCGCCAGAAGGTGAATGGAAAGGATGGAATTGGAGATCAGAAGGGGATTTATTGGTAAATGGTGCATTTTTTACACCATCAGGAGCAGGAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACGACTGGTGCTGGTGTACTTGGTTGTAAGAAAGGTTCTCGTTGCTGA
Protein sequence

>Msa1208670

MTTTTNSSLFFLLSLLTFSLISSSPLQDPDLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLVNGAFFTPSGAGGASSSYARASSLSARPSSLVGTITTGAGVLGCKKGSRC*