AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258860 MtrunA17_Chr4g0058051 99.509 407 2 0 1 407 1 407 0.0 843
Msa1258860 MtrunA17_Chr3g0116521 87.224 407 51 1 1 407 1 406 0.0 690
Msa1258860 MtrunA17_Chr6g0458201 79.052 401 83 1 7 407 5 404 0.0 676
Msa1258860 MtrunA17_Chr3g0123321 79.177 389 77 3 19 407 19 403 0.0 603
Msa1258860 MtrunA17_Chr7g0237761 69.287 407 121 2 1 407 42 444 0.0 592
Msa1258860 MtrunA17_Chr1g0169731 72.680 388 105 1 20 407 64 450 0.0 588
Msa1258860 MtrunA17_Chr3g0123331 68.250 400 125 2 9 407 8 406 0.0 558
Msa1258860 MtrunA17_Chr1g0210321 64.800 375 128 2 29 400 35 408 0.0 524
Msa1258860 MtrunA17_Chr1g0180381 61.461 397 143 3 14 403 22 415 0.0 516
Msa1258860 MtrunA17_Chr7g0264891 63.918 388 136 3 14 400 23 407 1.47e-179 508
Msa1258860 MtrunA17_Chr4g0060211 58.140 387 152 3 28 407 51 434 3.96e-167 475
Msa1258860 MtrunA17_Chr5g0416061 57.181 376 161 0 32 407 74 449 6.48e-158 452
Msa1258860 MtrunA17_Chr4g0075231 61.429 350 132 2 58 407 39 385 9.10e-158 449
Msa1258860 MtrunA17_Chr8g0362561 58.333 372 144 2 47 407 84 455 4.36e-157 451
Msa1258860 MtrunA17_Chr2g0288921 52.267 419 178 5 1 407 1 409 4.69e-152 436
Msa1258860 MtrunA17_Chr5g0416041 56.316 380 162 1 32 407 70 449 5.93e-151 435
Msa1258860 MtrunA17_Chr6g0452861 57.627 354 150 0 54 407 100 453 1.08e-149 432
Msa1258860 MtrunA17_Chr7g0216581 57.345 354 151 0 54 407 98 451 1.70e-143 416
Msa1258860 MtrunA17_Chr8g0373761 44.225 355 189 7 58 407 42 392 2.87e-96 293
Msa1258860 MtrunA17_Chr8g0373721 43.785 354 192 6 58 407 42 392 6.04e-96 292
Msa1258860 MtrunA17_Chr3g0089181 44.663 356 186 9 58 407 23 373 7.73e-95 289
Msa1258860 MtrunA17_Chr8g0373731 44.507 355 188 7 58 407 42 392 1.91e-89 276
Msa1258860 MtrunA17_Chr8g0373701 42.817 355 194 8 58 407 97 447 8.07e-89 276
Msa1258860 MtrunA17_Chr5g0403481 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1258860 MtrunA17_Chr5g0403461 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1258860 MtrunA17_Chr5g0403491 44.225 355 189 7 58 407 41 391 4.49e-87 270
Msa1258860 MtrunA17_Chr5g0403391 43.662 355 191 7 58 407 41 391 1.06e-86 268
Msa1258860 MtrunA17_Chr5g0414541 43.662 355 191 7 58 407 41 391 1.73e-86 268
Msa1258860 MtrunA17_Chr5g0403411 43.380 355 192 7 58 407 41 391 1.15e-82 258
Msa1258860 MtrunA17_Chr4g0031851 43.269 312 170 6 97 405 28 335 6.44e-80 250
Msa1258860 MtrunA17_Chr3g0113551 60.894 179 54 2 152 328 122 286 8.74e-71 224
Msa1258860 MtrunA17_Chr1g0183941 42.537 268 151 3 133 399 1 266 4.96e-68 216
Msa1258860 MtrunA17_Chr2g0288901 51.282 156 72 2 252 407 5 156 1.72e-50 167
Msa1258860 MtrunA17_Chr1g0212931 37.329 292 157 7 71 361 9 275 2.91e-46 162
Msa1258860 MtrunA17_Chr2g0288911 59.836 122 48 1 133 253 1 122 4.80e-44 149
Msa1258860 MtrunA17_Chr1g0182021 36.364 286 156 6 77 361 64 324 5.44e-39 144
Msa1258860 MtrunA17_Chr6g0481851 47.436 156 80 2 208 363 71 224 1.38e-37 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258860 AT5G63180.1 82.045 401 71 1 8 407 32 432 0.0 681
Msa1258860 AT1G67750.1 83.033 389 63 2 19 407 23 408 0.0 662
Msa1258860 AT4G24780.2 80.685 409 76 3 1 407 1 408 0.0 657
Msa1258860 AT4G24780.1 80.685 409 76 3 1 407 1 408 0.0 657
Msa1258860 AT4G13710.1 73.698 384 96 2 28 407 88 470 0.0 621
Msa1258860 AT3G27400.2 73.188 414 102 4 1 407 5 416 0.0 620
Msa1258860 AT3G27400.1 73.188 414 102 4 1 407 1 412 0.0 620
Msa1258860 AT4G13710.2 73.698 384 96 2 28 407 69 451 0.0 619
Msa1258860 AT3G07010.1 72.513 382 104 1 26 407 36 416 0.0 585
Msa1258860 AT1G04680.1 69.471 416 109 4 9 407 15 429 0.0 585
Msa1258860 AT3G07010.2 73.210 377 100 1 31 407 8 383 0.0 580
Msa1258860 AT3G24670.1 70.157 382 113 1 26 407 60 440 0.0 574
Msa1258860 AT3G24230.1 67.263 391 122 2 21 407 63 451 0.0 563
Msa1258860 AT5G48900.1 72.775 382 103 1 26 407 37 417 0.0 561
Msa1258860 AT4G13210.2 71.540 383 107 2 26 407 57 438 0.0 560
Msa1258860 AT4G13210.1 71.540 383 107 2 26 407 20 401 0.0 558
Msa1258860 AT3G53190.1 63.119 404 137 3 8 400 13 415 0.0 524
Msa1258860 AT5G04310.3 61.750 400 137 3 14 400 40 436 2.83e-176 500
Msa1258860 AT5G04310.1 61.386 404 140 3 14 404 40 440 1.14e-174 498
Msa1258860 AT5G04310.2 61.386 404 140 3 14 404 40 440 1.14e-174 498
Msa1258860 AT3G54920.1 61.499 387 124 5 29 400 37 413 1.86e-171 489
Msa1258860 AT5G55720.1 57.393 399 155 6 11 407 7 392 1.80e-165 470
Msa1258860 AT1G11920.1 62.000 350 131 2 58 407 37 384 5.70e-159 453
Msa1258860 AT1G14420.1 56.667 360 151 1 53 407 100 459 1.52e-155 447
Msa1258860 AT2G02720.1 57.983 357 145 1 56 407 99 455 2.14e-153 441
Msa1258860 AT4G22090.1 59.429 350 139 2 58 407 47 393 8.29e-153 437
Msa1258860 AT4G22080.1 58.857 350 141 2 58 407 47 393 9.88e-152 435
Msa1258860 AT5G15110.1 57.183 355 151 1 54 407 118 472 2.87e-149 432
Msa1258860 AT3G01270.1 56.338 355 154 1 54 407 121 475 5.63e-148 428
Msa1258860 AT1G30350.1 53.234 402 152 8 7 407 2 368 1.31e-138 400
Msa1258860 AT5G09280.1 48.062 258 131 3 91 347 6 261 8.16e-77 240
Msa1258860 AT3G55140.1 38.127 299 157 8 77 374 16 287 1.76e-48 168
Msa1258860 AT3G09540.1 37.801 291 149 9 75 361 61 323 1.06e-42 154
Msa1258860 AT3G09540.3 37.457 291 146 10 75 361 61 319 1.62e-40 148
Msa1258860 AT3G55140.2 37.121 264 143 7 112 374 22 263 3.53e-40 145
Msa1258860 AT3G09540.2 35.772 246 132 6 75 319 61 281 2.26e-35 132

Find 128 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGTTGTTAATCTCTT+TGG 0.204884 8_2:+60149008 Msa1258860:three_prime_UTR
AATTAATTAATTATAGAATA+TGG 0.215022 8_2:+60148863 Msa1258860:three_prime_UTR
GTTTGGTTTGGTCATTTCTT+TGG 0.215949 8_2:+60148885 Msa1258860:three_prime_UTR
CATCCTTTCCATTCACCTTC+TGG 0.229620 8_2:-60148551 None:intergenic
GGTTGTAGTTGTCATGTTTA+AGG 0.241272 8_2:-60146834 None:intergenic
GAGATCAGAAGGGGATTTAT+TGG 0.252599 8_2:+60148580 Msa1258860:CDS
GAAGGGGATTTATTGGTAAA+TGG 0.271139 8_2:+60148587 Msa1258860:CDS
CCATGATAAAGTTATGCTTT+TGG 0.272991 8_2:+60147803 Msa1258860:CDS
ACTTCTTGTGTAACCAAATC+AGG 0.275225 8_2:-60146926 None:intergenic
AGGGACTCCCCAGGACATTA+TGG 0.275653 8_2:+60147627 Msa1258860:CDS
ATCTACGTCGTAACAGATTC+TGG 0.307127 8_2:+60147342 Msa1258860:CDS
AAACGAAGGGTACCGGGTTT+TGG 0.308930 8_2:-60147384 None:intergenic
AATTCATTCAAGACCATTGA+TGG 0.310571 8_2:+60147486 Msa1258860:CDS
AAGGAAGAAGAGTGAGGAAT+TGG 0.316047 8_2:-60146855 None:intergenic
TGATTCAAGACGAACCATTA+TGG 0.319794 8_2:+60147412 Msa1258860:CDS
AGACTAGCAGATTGTGCAAT+TGG 0.327645 8_2:+60147282 Msa1258860:CDS
AAAATTATTGATATTGGTAT+TGG 0.335285 8_2:+60149092 Msa1258860:three_prime_UTR
TGGTTACACAAGAAGTTAAC+AGG 0.337713 8_2:+60146933 Msa1258860:CDS
ACCTCTTCAAGACCCTGATT+TGG 0.354799 8_2:+60146913 Msa1258860:CDS
CACCTCCAACAATCATCAAT+TGG 0.361226 8_2:-60147231 None:intergenic
GGTGATGGTGTTTCAATCTT+TGG 0.361315 8_2:+60147669 Msa1258860:CDS
TCTGTTTCCTTGGCTATTGA+TGG 0.363689 8_2:-60148293 None:intergenic
CACTGGGAAATGTATGCTAT+TGG 0.369377 8_2:+60148253 Msa1258860:CDS
TCTTTGGTGGAAGTCATGTT+TGG 0.372613 8_2:+60147685 Msa1258860:CDS
CTTTGGTGGAAGTCATGTTT+GGG 0.384354 8_2:+60147686 Msa1258860:CDS
CTCTTTAGCTAGGAGAAACT+TGG 0.387502 8_2:+60147182 Msa1258860:CDS
ATTGTAGGAAGAAAGTAAAA+TGG 0.390158 8_2:-60148930 None:intergenic
GTCATGTTTAAGGTTGTAAA+GGG 0.399072 8_2:-60146824 None:intergenic
CTTGCAAAGATTATCCATAA+TGG 0.404999 8_2:-60147426 None:intergenic
TTATAGAATATGGTTTGGTT+TGG 0.407768 8_2:+60148873 Msa1258860:three_prime_UTR
GGTTTGATTGATGCTATTCA+TGG 0.410643 8_2:+60147741 Msa1258860:CDS
GTTGGAGGTGTGACCCAAAC+TGG 0.411442 8_2:+60147244 Msa1258860:CDS
GGAGCTAGTGTTCACATTGC+TGG 0.411776 8_2:+60147513 Msa1258860:CDS
CTCTTTGCTGAATCTGTCAT+CGG 0.413264 8_2:-60148326 None:intergenic
GTGAATGGAAAGGATGGAAT+TGG 0.414525 8_2:+60148558 Msa1258860:CDS
ATTAATTATAGAATATGGTT+TGG 0.414962 8_2:+60148868 Msa1258860:three_prime_UTR
TGTCATGTTTAAGGTTGTAA+AGG 0.430838 8_2:-60146825 None:intergenic
TTAATTCAAGGGAGGGAAGT+TGG 0.436601 8_2:+60148798 Msa1258860:three_prime_UTR
TTCTCCACCCATAATGTCCT+GGG 0.438364 8_2:-60147635 None:intergenic
TCTTTGCTGAATCTGTCATC+GGG 0.444567 8_2:-60148325 None:intergenic
GACTAGCAGATTGTGCAATT+GGG 0.446577 8_2:+60147283 Msa1258860:CDS
ACGACTGGTGCTGGTGTACT+TGG 0.447068 8_2:+60148707 Msa1258860:CDS
GTTCTCCACCCATAATGTCC+TGG 0.462926 8_2:-60147636 None:intergenic
GCAGATTGTGCAATTGGGTT+CGG 0.464118 8_2:+60147288 Msa1258860:CDS
GGGCTACAAATCTGTTTCCT+TGG 0.465553 8_2:-60148303 None:intergenic
GGGACTCCCCAGGACATTAT+GGG 0.466397 8_2:+60147628 Msa1258860:CDS
CAGGCTGGTCAATTAATTCA+AGG 0.466623 8_2:+60148786 Msa1258860:three_prime_UTR
GAAACCCAATTGATGATTGT+TGG 0.470361 8_2:+60147226 Msa1258860:CDS
TTTCCTTGGCTATTGATGGT+AGG 0.471059 8_2:-60148289 None:intergenic
GTTTGGTCATTTCTTTGGCT+AGG 0.479126 8_2:+60148890 Msa1258860:three_prime_UTR
AGATTCTGGTGACGACGATC+CGG 0.480462 8_2:+60147356 Msa1258860:CDS
ACCTCCAACAATCATCAATT+GGG 0.481818 8_2:-60147230 None:intergenic
CACGGCGAAACGAAGGGTAC+CGG 0.485957 8_2:-60147391 None:intergenic
TCTTTGTCTAACTGTAATGA+TGG 0.487158 8_2:+60147720 Msa1258860:CDS
GGTGTACTTGGTTGTAAGAA+AGG 0.495383 8_2:+60148719 Msa1258860:CDS
GATGCTCCTCCTGCTCCTGA+TGG 0.498131 8_2:-60148623 None:intergenic
TAAACAATGACTATACTCAC+TGG 0.505124 8_2:+60148236 Msa1258860:CDS
AGGATGCGCCAGAAGGTGAA+TGG 0.512208 8_2:+60148543 Msa1258860:CDS
TTCAAGACCATTGATGGAAG+AGG 0.512334 8_2:+60147492 Msa1258860:CDS
GGGTACCTCTCATGTGGAAG+TGG 0.513126 8_2:+60147204 Msa1258860:CDS
GAGACAGTTGTTTGCTCGAG+GGG 0.513260 8_2:-60148761 None:intergenic
CAGAGACAGTTGTTTGCTCG+AGG 0.519988 8_2:-60148763 None:intergenic
ACTAGCTCCTCTTCCATCAA+TGG 0.520452 8_2:-60147499 None:intergenic
GGATGGAATTGGAGATCAGA+AGG 0.522837 8_2:+60148569 Msa1258860:CDS
AAATCAATGGCTCTTTAGCT+AGG 0.524502 8_2:+60147172 Msa1258860:CDS
TGGGAAATGTATGCTATTGG+AGG 0.524720 8_2:+60148256 Msa1258860:CDS
GAGCAAACAACTGTCTCTGC+AGG 0.526167 8_2:+60148767 Msa1258860:three_prime_UTR
CCAAAAGCATAACTTTATCA+TGG 0.527550 8_2:-60147803 None:intergenic
CATATACATGATTGTAAACA+AGG 0.532097 8_2:+60147588 Msa1258860:CDS
GCAAGACCATCTTCTCTAGT+TGG 0.537015 8_2:+60148677 Msa1258860:CDS
GTTTGATTGATGCTATTCAT+GGG 0.537333 8_2:+60147742 Msa1258860:CDS
CCAAAGAGATTAACAACTAG+AGG 0.538229 8_2:-60149008 None:intergenic
TAATGGTTCGTCTTGAATCA+CGG 0.543141 8_2:-60147409 None:intergenic
CTTGAATCACGGCGAAACGA+AGG 0.545050 8_2:-60147398 None:intergenic
TCTTTAGCTAGGAGAAACTT+GGG 0.545580 8_2:+60147183 Msa1258860:CDS
ATTGTACCAACTAGAGAAGA+TGG 0.548453 8_2:-60148683 None:intergenic
AGAGACAGTTGTTTGCTCGA+GGG 0.550545 8_2:-60148762 None:intergenic
GGGTTCGGTAAGAATGCCAT+TGG 0.551684 8_2:+60147303 Msa1258860:CDS
AGAGAGAAGGAAGAAGAGTG+AGG 0.555094 8_2:-60146861 None:intergenic
ACATACTGAATTGTAATACA+TGG 0.557374 8_2:-60147540 None:intergenic
AAACAACTGTCTCTGCAGGC+TGG 0.561868 8_2:+60148771 Msa1258860:three_prime_UTR
GTTAGAGATGGTAATTGCAG+TGG 0.564291 8_2:-60147766 None:intergenic
CTTCTTGTGTAACCAAATCA+GGG 0.566684 8_2:-60146925 None:intergenic
TTCGGTAAGAATGCCATTGG+TGG 0.570130 8_2:+60147306 Msa1258860:CDS
GTGACTAATGTTATAATACA+TGG 0.574654 8_2:+60147561 Msa1258860:CDS
TGGTGGAAGTCATGTTTGGG+TGG 0.575416 8_2:+60147689 Msa1258860:CDS
TACATGATTGTAAACAAGGT+GGG 0.575537 8_2:+60147592 Msa1258860:CDS
AGTCATATAATTGTTAGAGA+TGG 0.575991 8_2:-60147778 None:intergenic
TTGAATCACGGCGAAACGAA+GGG 0.577749 8_2:-60147397 None:intergenic
GATGGTGTTTCAATCTTTGG+TGG 0.582213 8_2:+60147672 Msa1258860:CDS
AGGTGGGAATGCCATGGTGA+GGG 0.586721 8_2:+60147608 Msa1258860:CDS
ACCTTGGCATTCTTTGAACA+AGG 0.589280 8_2:-60147896 None:intergenic
GGTTTCCACTTCCACATGAG+AGG 0.590368 8_2:-60147209 None:intergenic
AAACAATGACTATACTCACT+GGG 0.594536 8_2:+60148237 Msa1258860:CDS
GGTACAATAACGACTGGTGC+TGG 0.596299 8_2:+60148698 Msa1258860:CDS
GATGGAATTGGAGATCAGAA+GGG 0.598901 8_2:+60148570 Msa1258860:CDS
CGATGACAGATTCAGCAAAG+AGG 0.599514 8_2:+60148327 Msa1258860:CDS
ATGGTTTGCAGGTGTAGGCA+TGG 0.600072 8_2:+60148199 Msa1258860:intron
CTAGTTGGTACAATAACGAC+TGG 0.602596 8_2:+60148692 Msa1258860:CDS
GCTAGTGTTCACATTGCTGG+TGG 0.603604 8_2:+60147516 Msa1258860:CDS
AATCCTACCATCAATAGCCA+AGG 0.603716 8_2:+60148286 Msa1258860:CDS
ATGGAATTGGAGATCAGAAG+GGG 0.604249 8_2:+60148571 Msa1258860:CDS
TTTACACCATCAGGAGCAGG+AGG 0.609904 8_2:+60148617 Msa1258860:CDS
CAGAAGGTGAATGGAAAGGA+TGG 0.613208 8_2:+60148552 Msa1258860:CDS
ACCCAATTGATGATTGTTGG+AGG 0.614236 8_2:+60147229 Msa1258860:CDS
TGGTCAATTAATTCAAGGGA+GGG 0.614509 8_2:+60148791 Msa1258860:three_prime_UTR
AGGCTGGTCAATTAATTCAA+GGG 0.615208 8_2:+60148787 Msa1258860:three_prime_UTR
AGGGTCTTGAAGAGGTGAAG+AGG 0.616881 8_2:-60146906 None:intergenic
ACCAAATCAGGGTCTTGAAG+AGG 0.622034 8_2:-60146914 None:intergenic
AACTTGGGGTACCTCTCATG+TGG 0.622347 8_2:+60147198 Msa1258860:CDS
CTTTGCTGAATCTGTCATCG+GGG 0.624770 8_2:-60148324 None:intergenic
GCGCCAGAAGGTGAATGGAA+AGG 0.624970 8_2:+60148548 Msa1258860:CDS
AAGCACGAGGATGCGCCAGA+AGG 0.627072 8_2:+60148536 Msa1258860:CDS
AAGGTGGGAATGCCATGGTG+AGG 0.634971 8_2:+60147607 Msa1258860:CDS
CTGGTCAATTAATTCAAGGG+AGG 0.645239 8_2:+60148790 Msa1258860:three_prime_UTR
GATCCGGTGACACCAAAACC+CGG 0.648661 8_2:+60147372 Msa1258860:CDS
AGAACAGTATCAGACGGTGA+TGG 0.653341 8_2:+60147654 Msa1258860:CDS
TCTCCACCCATAATGTCCTG+GGG 0.654071 8_2:-60147634 None:intergenic
GATAATCTTTGCAAGAGACA+TGG 0.658003 8_2:+60147434 Msa1258860:CDS
ACTCCCCAGGACATTATGGG+TGG 0.660040 8_2:+60147631 Msa1258860:CDS
TTGGAGGTGTGACCCAAACT+GGG 0.660140 8_2:+60147245 Msa1258860:CDS
TCCTGGGGAGTCCCTCACCA+TGG 0.666445 8_2:-60147619 None:intergenic
TTTGCTGAATCTGTCATCGG+GGG 0.676835 8_2:-60148323 None:intergenic
GGGTGGAGAACAGTATCAGA+CGG 0.677252 8_2:+60147648 Msa1258860:CDS
ATACATGATTGTAAACAAGG+TGG 0.686460 8_2:+60147591 Msa1258860:CDS
CTTTAGCTAGGAGAAACTTG+GGG 0.690368 8_2:+60147184 Msa1258860:CDS
TAAACAAGGTGGGAATGCCA+TGG 0.700137 8_2:+60147602 Msa1258860:CDS
GCCTTGTTCAAAGAATGCCA+AGG 0.701595 8_2:+60147895 Msa1258860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAAAAAGATAAA+CGG + chr8_2:60148002-60148021 Msa1258860:intron 10.0%
!! TATTGAAAAATTATTGATAT+TGG + chr8_2:60149086-60149105 Msa1258860:three_prime_UTR 10.0%
!! AAAAAAAGAAAAAAGATAAA+CGG + chr8_2:60148002-60148021 Msa1258860:intron 10.0%
!! TATTGAAAAATTATTGATAT+TGG + chr8_2:60149086-60149105 Msa1258860:three_prime_UTR 10.0%
!! GAAAAAATAATAATTAGCTA+GGG - chr8_2:60146991-60147010 None:intergenic 15.0%
!! AGAAAAAATAATAATTAGCT+AGG - chr8_2:60146992-60147011 None:intergenic 15.0%
!!! TTTTTGTTTATAATACTAGA+GGG - chr8_2:60147079-60147098 None:intergenic 15.0%
!!! ATTTTTGTTTATAATACTAG+AGG - chr8_2:60147080-60147099 None:intergenic 15.0%
!!! GTTTATCTTTTTTCTTTTTT+TGG - chr8_2:60148003-60148022 None:intergenic 15.0%
!! AAAAAAGAAAAAAGATAAAC+GGG + chr8_2:60148003-60148022 Msa1258860:intron 15.0%
!!! AATACATCAAATGATTTTAA+CGG + chr8_2:60148398-60148417 Msa1258860:intron 15.0%
!! ATTAATTATAGAATATGGTT+TGG + chr8_2:60148868-60148887 Msa1258860:three_prime_UTR 15.0%
!! AATCCAAAAATAAAAATTGT+AGG - chr8_2:60148948-60148967 None:intergenic 15.0%
!! AAAATTATTGATATTGGTAT+TGG + chr8_2:60149092-60149111 Msa1258860:three_prime_UTR 15.0%
!! GAAAAAATAATAATTAGCTA+GGG - chr8_2:60146991-60147010 None:intergenic 15.0%
!! AGAAAAAATAATAATTAGCT+AGG - chr8_2:60146992-60147011 None:intergenic 15.0%
!!! TTTTTGTTTATAATACTAGA+GGG - chr8_2:60147079-60147098 None:intergenic 15.0%
!!! ATTTTTGTTTATAATACTAG+AGG - chr8_2:60147080-60147099 None:intergenic 15.0%
!!! GTTTATCTTTTTTCTTTTTT+TGG - chr8_2:60148003-60148022 None:intergenic 15.0%
!! AAAAAAGAAAAAAGATAAAC+GGG + chr8_2:60148003-60148022 Msa1258860:intron 15.0%
!!! AATACATCAAATGATTTTAA+CGG + chr8_2:60148398-60148417 Msa1258860:intron 15.0%
!! ATTAATTATAGAATATGGTT+TGG + chr8_2:60148868-60148887 Msa1258860:three_prime_UTR 15.0%
!! AATCCAAAAATAAAAATTGT+AGG - chr8_2:60148948-60148967 None:intergenic 15.0%
!!! CTTTTTTCTTTTTTTGGAAA+TGG - chr8_2:60147997-60148016 None:intergenic 20.0%
!!! TAATTAGTGTTTTCAGTATA+TGG + chr8_2:60148131-60148150 Msa1258860:intron 20.0%
!!! AATTAGTGTTTTCAGTATAT+GGG + chr8_2:60148132-60148151 Msa1258860:intron 20.0%
!! AATTAGAAAAACATATGTGA+TGG + chr8_2:60148180-60148199 Msa1258860:intron 20.0%
!!! AGACGTTGAATTATTATTTT+AGG + chr8_2:60148508-60148527 Msa1258860:intron 20.0%
!!! CTTCCTACAATTTTTATTTT+TGG + chr8_2:60148942-60148961 Msa1258860:three_prime_UTR 20.0%
!!! CTTTTTTCTTTTTTTGGAAA+TGG - chr8_2:60147997-60148016 None:intergenic 20.0%
!!! TAATTAGTGTTTTCAGTATA+TGG + chr8_2:60148131-60148150 Msa1258860:intron 20.0%
!!! AATTAGTGTTTTCAGTATAT+GGG + chr8_2:60148132-60148151 Msa1258860:intron 20.0%
!! AATTAGAAAAACATATGTGA+TGG + chr8_2:60148180-60148199 Msa1258860:intron 20.0%
!!! AGACGTTGAATTATTATTTT+AGG + chr8_2:60148508-60148527 Msa1258860:intron 20.0%
!!! CTTCCTACAATTTTTATTTT+TGG + chr8_2:60148942-60148961 Msa1258860:three_prime_UTR 20.0%
! ATTTGTATGTTAAGCTAGTT+TGG - chr8_2:60146962-60146981 None:intergenic 25.0%
!!! ATAGTAAAGTATTTTTCTGC+AGG + chr8_2:60147148-60147167 Msa1258860:intron 25.0%
! ACATACTGAATTGTAATACA+TGG - chr8_2:60147543-60147562 None:intergenic 25.0%
! GTGACTAATGTTATAATACA+TGG + chr8_2:60147561-60147580 Msa1258860:CDS 25.0%
! CATATACATGATTGTAAACA+AGG + chr8_2:60147588-60147607 Msa1258860:CDS 25.0%
! AGTCATATAATTGTTAGAGA+TGG - chr8_2:60147781-60147800 None:intergenic 25.0%
!! CATGATAAAGTTATGCTTTT+GGG + chr8_2:60147804-60147823 Msa1258860:CDS 25.0%
!!! ACTATTGCTTTTAATCACTT+TGG + chr8_2:60147867-60147886 Msa1258860:CDS 25.0%
! AAAGTATATGATGATTACCT+TGG - chr8_2:60147915-60147934 None:intergenic 25.0%
!! ATTAGTGTTTTCAGTATATG+GGG + chr8_2:60148133-60148152 Msa1258860:intron 25.0%
! ACATCAAATGTATATGTGTA+CGG + chr8_2:60148461-60148480 Msa1258860:intron 25.0%
!!! TTATAGAATATGGTTTGGTT+TGG + chr8_2:60148873-60148892 Msa1258860:three_prime_UTR 25.0%
! ATTGTAGGAAGAAAGTAAAA+TGG - chr8_2:60148933-60148952 None:intergenic 25.0%
! ATTTGTATGTTAAGCTAGTT+TGG - chr8_2:60146962-60146981 None:intergenic 25.0%
!!! ATAGTAAAGTATTTTTCTGC+AGG + chr8_2:60147148-60147167 Msa1258860:intron 25.0%
! ACATACTGAATTGTAATACA+TGG - chr8_2:60147543-60147562 None:intergenic 25.0%
! GTGACTAATGTTATAATACA+TGG + chr8_2:60147561-60147580 Msa1258860:CDS 25.0%
! CATATACATGATTGTAAACA+AGG + chr8_2:60147588-60147607 Msa1258860:CDS 25.0%
! AGTCATATAATTGTTAGAGA+TGG - chr8_2:60147781-60147800 None:intergenic 25.0%
!! CATGATAAAGTTATGCTTTT+GGG + chr8_2:60147804-60147823 Msa1258860:CDS 25.0%
!!! ACTATTGCTTTTAATCACTT+TGG + chr8_2:60147867-60147886 Msa1258860:CDS 25.0%
! AAAGTATATGATGATTACCT+TGG - chr8_2:60147915-60147934 None:intergenic 25.0%
!! ATTAGTGTTTTCAGTATATG+GGG + chr8_2:60148133-60148152 Msa1258860:intron 25.0%
! ACATCAAATGTATATGTGTA+CGG + chr8_2:60148461-60148480 Msa1258860:intron 25.0%
!!! TTATAGAATATGGTTTGGTT+TGG + chr8_2:60148873-60148892 Msa1258860:three_prime_UTR 25.0%
! ATTGTAGGAAGAAAGTAAAA+TGG - chr8_2:60148933-60148952 None:intergenic 25.0%
! GTCATGTTTAAGGTTGTAAA+GGG - chr8_2:60146827-60146846 None:intergenic 30.0%
! TGTCATGTTTAAGGTTGTAA+AGG - chr8_2:60146828-60146847 None:intergenic 30.0%
! TTTTTCTGCAGGAAAATCAA+TGG + chr8_2:60147159-60147178 Msa1258860:intron 30.0%
!! TTTACCATTTTTACCACCAA+TGG - chr8_2:60147322-60147341 None:intergenic 30.0%
CTTGCAAAGATTATCCATAA+TGG - chr8_2:60147429-60147448 None:intergenic 30.0%
AATTCATTCAAGACCATTGA+TGG + chr8_2:60147486-60147505 Msa1258860:CDS 30.0%
ATACATGATTGTAAACAAGG+TGG + chr8_2:60147591-60147610 Msa1258860:CDS 30.0%
TACATGATTGTAAACAAGGT+GGG + chr8_2:60147592-60147611 Msa1258860:CDS 30.0%
TCTTTGTCTAACTGTAATGA+TGG + chr8_2:60147720-60147739 Msa1258860:CDS 30.0%
GTTTGATTGATGCTATTCAT+GGG + chr8_2:60147742-60147761 Msa1258860:CDS 30.0%
! CCAAAAGCATAACTTTATCA+TGG - chr8_2:60147806-60147825 None:intergenic 30.0%
! CCATGATAAAGTTATGCTTT+TGG + chr8_2:60147803-60147822 Msa1258860:CDS 30.0%
! ATAAACGGGTTTATGAAAAG+TGG + chr8_2:60148017-60148036 Msa1258860:intron 30.0%
! TAAACGGGTTTATGAAAAGT+GGG + chr8_2:60148018-60148037 Msa1258860:intron 30.0%
GTTTATGAAAAGTGGGAAAA+GGG + chr8_2:60148025-60148044 Msa1258860:intron 30.0%
TTTATGAAAAGTGGGAAAAG+GGG + chr8_2:60148026-60148045 Msa1258860:intron 30.0%
AGTGTAGAAATCAATGTGTA+TGG + chr8_2:60148076-60148095 Msa1258860:intron 30.0%
GTGTAGAAATCAATGTGTAT+GGG + chr8_2:60148077-60148096 Msa1258860:intron 30.0%
TAAACAATGACTATACTCAC+TGG + chr8_2:60148236-60148255 Msa1258860:CDS 30.0%
AAACAATGACTATACTCACT+GGG + chr8_2:60148237-60148256 Msa1258860:CDS 30.0%
! GTCATGTTTAAGGTTGTAAA+GGG - chr8_2:60146827-60146846 None:intergenic 30.0%
! TGTCATGTTTAAGGTTGTAA+AGG - chr8_2:60146828-60146847 None:intergenic 30.0%
! TTTTTCTGCAGGAAAATCAA+TGG + chr8_2:60147159-60147178 Msa1258860:intron 30.0%
!! TTTACCATTTTTACCACCAA+TGG - chr8_2:60147322-60147341 None:intergenic 30.0%
CTTGCAAAGATTATCCATAA+TGG - chr8_2:60147429-60147448 None:intergenic 30.0%
AATTCATTCAAGACCATTGA+TGG + chr8_2:60147486-60147505 Msa1258860:CDS 30.0%
ATACATGATTGTAAACAAGG+TGG + chr8_2:60147591-60147610 Msa1258860:CDS 30.0%
TACATGATTGTAAACAAGGT+GGG + chr8_2:60147592-60147611 Msa1258860:CDS 30.0%
TCTTTGTCTAACTGTAATGA+TGG + chr8_2:60147720-60147739 Msa1258860:CDS 30.0%
GTTTGATTGATGCTATTCAT+GGG + chr8_2:60147742-60147761 Msa1258860:CDS 30.0%
! CCAAAAGCATAACTTTATCA+TGG - chr8_2:60147806-60147825 None:intergenic 30.0%
! CCATGATAAAGTTATGCTTT+TGG + chr8_2:60147803-60147822 Msa1258860:CDS 30.0%
! ATAAACGGGTTTATGAAAAG+TGG + chr8_2:60148017-60148036 Msa1258860:intron 30.0%
! TAAACGGGTTTATGAAAAGT+GGG + chr8_2:60148018-60148037 Msa1258860:intron 30.0%
GTTTATGAAAAGTGGGAAAA+GGG + chr8_2:60148025-60148044 Msa1258860:intron 30.0%
TTTATGAAAAGTGGGAAAAG+GGG + chr8_2:60148026-60148045 Msa1258860:intron 30.0%
AGTGTAGAAATCAATGTGTA+TGG + chr8_2:60148076-60148095 Msa1258860:intron 30.0%
GTGTAGAAATCAATGTGTAT+GGG + chr8_2:60148077-60148096 Msa1258860:intron 30.0%
TAAACAATGACTATACTCAC+TGG + chr8_2:60148236-60148255 Msa1258860:CDS 30.0%
AAACAATGACTATACTCACT+GGG + chr8_2:60148237-60148256 Msa1258860:CDS 30.0%
GGTTGTAGTTGTCATGTTTA+AGG - chr8_2:60146837-60146856 None:intergenic 35.0%
AGGAAATGAGAGAAAAAGTG+AGG - chr8_2:60146889-60146908 None:intergenic 35.0%
CTTCTTGTGTAACCAAATCA+GGG - chr8_2:60146928-60146947 None:intergenic 35.0%
ACTTCTTGTGTAACCAAATC+AGG - chr8_2:60146929-60146948 None:intergenic 35.0%
TGGTTACACAAGAAGTTAAC+AGG + chr8_2:60146933-60146952 Msa1258860:CDS 35.0%
AAATCAATGGCTCTTTAGCT+AGG + chr8_2:60147172-60147191 Msa1258860:CDS 35.0%
TCTTTAGCTAGGAGAAACTT+GGG + chr8_2:60147183-60147202 Msa1258860:CDS 35.0%
! GAAACCCAATTGATGATTGT+TGG + chr8_2:60147226-60147245 Msa1258860:CDS 35.0%
ACCTCCAACAATCATCAATT+GGG - chr8_2:60147233-60147252 None:intergenic 35.0%
!!! GTCTGTTTTTTTCCCAGTTT+GGG - chr8_2:60147260-60147279 None:intergenic 35.0%
!!! TGTCTGTTTTTTTCCCAGTT+TGG - chr8_2:60147261-60147280 None:intergenic 35.0%
! AATGCCATTGGTGGTAAAAA+TGG + chr8_2:60147315-60147334 Msa1258860:CDS 35.0%
TAATGGTTCGTCTTGAATCA+CGG - chr8_2:60147412-60147431 None:intergenic 35.0%
TGATTCAAGACGAACCATTA+TGG + chr8_2:60147412-60147431 Msa1258860:CDS 35.0%
GATAATCTTTGCAAGAGACA+TGG + chr8_2:60147434-60147453 Msa1258860:CDS 35.0%
GGTTTGATTGATGCTATTCA+TGG + chr8_2:60147741-60147760 Msa1258860:CDS 35.0%
! GCTTTTAATCACTTTGGTGA+AGG + chr8_2:60147873-60147892 Msa1258860:CDS 35.0%
GGTTTATGAAAAGTGGGAAA+AGG + chr8_2:60148024-60148043 Msa1258860:intron 35.0%
TTATGAAAAGTGGGAAAAGG+GGG + chr8_2:60148027-60148046 Msa1258860:intron 35.0%
! AAACATATGTGATGGTTTGC+AGG + chr8_2:60148188-60148207 Msa1258860:intron 35.0%
GAAGGGGATTTATTGGTAAA+TGG + chr8_2:60148587-60148606 Msa1258860:CDS 35.0%
ATTGTACCAACTAGAGAAGA+TGG - chr8_2:60148686-60148705 None:intergenic 35.0%
! AGGCTGGTCAATTAATTCAA+GGG + chr8_2:60148787-60148806 Msa1258860:three_prime_UTR 35.0%
TGGTCAATTAATTCAAGGGA+GGG + chr8_2:60148791-60148810 Msa1258860:three_prime_UTR 35.0%
!! GTTTGGTTTGGTCATTTCTT+TGG + chr8_2:60148885-60148904 Msa1258860:three_prime_UTR 35.0%
CCAAAGAGATTAACAACTAG+AGG - chr8_2:60149011-60149030 None:intergenic 35.0%
CCTCTAGTTGTTAATCTCTT+TGG + chr8_2:60149008-60149027 Msa1258860:three_prime_UTR 35.0%
! CTTCTGCAATTGTTTTCTCT+TGG - chr8_2:60149055-60149074 None:intergenic 35.0%
GGTTGTAGTTGTCATGTTTA+AGG - chr8_2:60146837-60146856 None:intergenic 35.0%
AGGAAATGAGAGAAAAAGTG+AGG - chr8_2:60146889-60146908 None:intergenic 35.0%
CTTCTTGTGTAACCAAATCA+GGG - chr8_2:60146928-60146947 None:intergenic 35.0%
ACTTCTTGTGTAACCAAATC+AGG - chr8_2:60146929-60146948 None:intergenic 35.0%
TGGTTACACAAGAAGTTAAC+AGG + chr8_2:60146933-60146952 Msa1258860:CDS 35.0%
AAATCAATGGCTCTTTAGCT+AGG + chr8_2:60147172-60147191 Msa1258860:CDS 35.0%
TCTTTAGCTAGGAGAAACTT+GGG + chr8_2:60147183-60147202 Msa1258860:CDS 35.0%
! GAAACCCAATTGATGATTGT+TGG + chr8_2:60147226-60147245 Msa1258860:CDS 35.0%
ACCTCCAACAATCATCAATT+GGG - chr8_2:60147233-60147252 None:intergenic 35.0%
!!! GTCTGTTTTTTTCCCAGTTT+GGG - chr8_2:60147260-60147279 None:intergenic 35.0%
!!! TGTCTGTTTTTTTCCCAGTT+TGG - chr8_2:60147261-60147280 None:intergenic 35.0%
! AATGCCATTGGTGGTAAAAA+TGG + chr8_2:60147315-60147334 Msa1258860:CDS 35.0%
TAATGGTTCGTCTTGAATCA+CGG - chr8_2:60147412-60147431 None:intergenic 35.0%
TGATTCAAGACGAACCATTA+TGG + chr8_2:60147412-60147431 Msa1258860:CDS 35.0%
GATAATCTTTGCAAGAGACA+TGG + chr8_2:60147434-60147453 Msa1258860:CDS 35.0%
GGTTTGATTGATGCTATTCA+TGG + chr8_2:60147741-60147760 Msa1258860:CDS 35.0%
! GCTTTTAATCACTTTGGTGA+AGG + chr8_2:60147873-60147892 Msa1258860:CDS 35.0%
GGTTTATGAAAAGTGGGAAA+AGG + chr8_2:60148024-60148043 Msa1258860:intron 35.0%
TTATGAAAAGTGGGAAAAGG+GGG + chr8_2:60148027-60148046 Msa1258860:intron 35.0%
! AAACATATGTGATGGTTTGC+AGG + chr8_2:60148188-60148207 Msa1258860:intron 35.0%
GAAGGGGATTTATTGGTAAA+TGG + chr8_2:60148587-60148606 Msa1258860:CDS 35.0%
ATTGTACCAACTAGAGAAGA+TGG - chr8_2:60148686-60148705 None:intergenic 35.0%
! AGGCTGGTCAATTAATTCAA+GGG + chr8_2:60148787-60148806 Msa1258860:three_prime_UTR 35.0%
TGGTCAATTAATTCAAGGGA+GGG + chr8_2:60148791-60148810 Msa1258860:three_prime_UTR 35.0%
!! GTTTGGTTTGGTCATTTCTT+TGG + chr8_2:60148885-60148904 Msa1258860:three_prime_UTR 35.0%
CCAAAGAGATTAACAACTAG+AGG - chr8_2:60149011-60149030 None:intergenic 35.0%
CCTCTAGTTGTTAATCTCTT+TGG + chr8_2:60149008-60149027 Msa1258860:three_prime_UTR 35.0%
! CTTCTGCAATTGTTTTCTCT+TGG - chr8_2:60149055-60149074 None:intergenic 35.0%
AAGGAAGAAGAGTGAGGAAT+TGG - chr8_2:60146858-60146877 None:intergenic 40.0%
AAAAAGTGAGGAGAGAGAGA+AGG - chr8_2:60146877-60146896 None:intergenic 40.0%
CTCTTTAGCTAGGAGAAACT+TGG + chr8_2:60147182-60147201 Msa1258860:CDS 40.0%
CTTTAGCTAGGAGAAACTTG+GGG + chr8_2:60147184-60147203 Msa1258860:CDS 40.0%
! ACCCAATTGATGATTGTTGG+AGG + chr8_2:60147229-60147248 Msa1258860:CDS 40.0%
CACCTCCAACAATCATCAAT+TGG - chr8_2:60147234-60147253 None:intergenic 40.0%
AGACTAGCAGATTGTGCAAT+TGG + chr8_2:60147282-60147301 Msa1258860:CDS 40.0%
GACTAGCAGATTGTGCAATT+GGG + chr8_2:60147283-60147302 Msa1258860:CDS 40.0%
ATCTACGTCGTAACAGATTC+TGG + chr8_2:60147342-60147361 Msa1258860:CDS 40.0%
TTCAAGACCATTGATGGAAG+AGG + chr8_2:60147492-60147511 Msa1258860:CDS 40.0%
! GGTGATGGTGTTTCAATCTT+TGG + chr8_2:60147669-60147688 Msa1258860:CDS 40.0%
GATGGTGTTTCAATCTTTGG+TGG + chr8_2:60147672-60147691 Msa1258860:CDS 40.0%
TCTTTGGTGGAAGTCATGTT+TGG + chr8_2:60147685-60147704 Msa1258860:CDS 40.0%
CTTTGGTGGAAGTCATGTTT+GGG + chr8_2:60147686-60147705 Msa1258860:CDS 40.0%
GTTAGAGATGGTAATTGCAG+TGG - chr8_2:60147769-60147788 None:intergenic 40.0%
ACCTTGGCATTCTTTGAACA+AGG - chr8_2:60147899-60147918 None:intergenic 40.0%
!! TAGGCATGGTTATTTTCACG+TGG + chr8_2:60148213-60148232 Msa1258860:CDS 40.0%
CACTGGGAAATGTATGCTAT+TGG + chr8_2:60148253-60148272 Msa1258860:CDS 40.0%
TGGGAAATGTATGCTATTGG+AGG + chr8_2:60148256-60148275 Msa1258860:CDS 40.0%
AATCCTACCATCAATAGCCA+AGG + chr8_2:60148286-60148305 Msa1258860:CDS 40.0%
! TTTCCTTGGCTATTGATGGT+AGG - chr8_2:60148292-60148311 None:intergenic 40.0%
TCTGTTTCCTTGGCTATTGA+TGG - chr8_2:60148296-60148315 None:intergenic 40.0%
TCTTTGCTGAATCTGTCATC+GGG - chr8_2:60148328-60148347 None:intergenic 40.0%
CTCTTTGCTGAATCTGTCAT+CGG - chr8_2:60148329-60148348 None:intergenic 40.0%
!! ATTTTAGGTGACAAAGCACG+AGG + chr8_2:60148523-60148542 Msa1258860:intron 40.0%
GTGAATGGAAAGGATGGAAT+TGG + chr8_2:60148558-60148577 Msa1258860:CDS 40.0%
GATGGAATTGGAGATCAGAA+GGG + chr8_2:60148570-60148589 Msa1258860:CDS 40.0%
ATGGAATTGGAGATCAGAAG+GGG + chr8_2:60148571-60148590 Msa1258860:CDS 40.0%
GAGATCAGAAGGGGATTTAT+TGG + chr8_2:60148580-60148599 Msa1258860:CDS 40.0%
!!! GGTGCATTTTTTACACCATC+AGG + chr8_2:60148608-60148627 Msa1258860:CDS 40.0%
!!! TTTTTTACACCATCAGGAGC+AGG + chr8_2:60148614-60148633 Msa1258860:CDS 40.0%
! CTAGTTGGTACAATAACGAC+TGG + chr8_2:60148692-60148711 Msa1258860:CDS 40.0%
GGTGTACTTGGTTGTAAGAA+AGG + chr8_2:60148719-60148738 Msa1258860:CDS 40.0%
! CAGGCTGGTCAATTAATTCA+AGG + chr8_2:60148786-60148805 Msa1258860:three_prime_UTR 40.0%
CTGGTCAATTAATTCAAGGG+AGG + chr8_2:60148790-60148809 Msa1258860:three_prime_UTR 40.0%
TTAATTCAAGGGAGGGAAGT+TGG + chr8_2:60148798-60148817 Msa1258860:three_prime_UTR 40.0%
GTTTGGTCATTTCTTTGGCT+AGG + chr8_2:60148890-60148909 Msa1258860:three_prime_UTR 40.0%
AAGGAAGAAGAGTGAGGAAT+TGG - chr8_2:60146858-60146877 None:intergenic 40.0%
AAAAAGTGAGGAGAGAGAGA+AGG - chr8_2:60146877-60146896 None:intergenic 40.0%
CTCTTTAGCTAGGAGAAACT+TGG + chr8_2:60147182-60147201 Msa1258860:CDS 40.0%
CTTTAGCTAGGAGAAACTTG+GGG + chr8_2:60147184-60147203 Msa1258860:CDS 40.0%
! ACCCAATTGATGATTGTTGG+AGG + chr8_2:60147229-60147248 Msa1258860:CDS 40.0%
CACCTCCAACAATCATCAAT+TGG - chr8_2:60147234-60147253 None:intergenic 40.0%
AGACTAGCAGATTGTGCAAT+TGG + chr8_2:60147282-60147301 Msa1258860:CDS 40.0%
GACTAGCAGATTGTGCAATT+GGG + chr8_2:60147283-60147302 Msa1258860:CDS 40.0%
ATCTACGTCGTAACAGATTC+TGG + chr8_2:60147342-60147361 Msa1258860:CDS 40.0%
TTCAAGACCATTGATGGAAG+AGG + chr8_2:60147492-60147511 Msa1258860:CDS 40.0%
! GGTGATGGTGTTTCAATCTT+TGG + chr8_2:60147669-60147688 Msa1258860:CDS 40.0%
GATGGTGTTTCAATCTTTGG+TGG + chr8_2:60147672-60147691 Msa1258860:CDS 40.0%
TCTTTGGTGGAAGTCATGTT+TGG + chr8_2:60147685-60147704 Msa1258860:CDS 40.0%
CTTTGGTGGAAGTCATGTTT+GGG + chr8_2:60147686-60147705 Msa1258860:CDS 40.0%
GTTAGAGATGGTAATTGCAG+TGG - chr8_2:60147769-60147788 None:intergenic 40.0%
ACCTTGGCATTCTTTGAACA+AGG - chr8_2:60147899-60147918 None:intergenic 40.0%
!! TAGGCATGGTTATTTTCACG+TGG + chr8_2:60148213-60148232 Msa1258860:CDS 40.0%
CACTGGGAAATGTATGCTAT+TGG + chr8_2:60148253-60148272 Msa1258860:CDS 40.0%
TGGGAAATGTATGCTATTGG+AGG + chr8_2:60148256-60148275 Msa1258860:CDS 40.0%
AATCCTACCATCAATAGCCA+AGG + chr8_2:60148286-60148305 Msa1258860:CDS 40.0%
! TTTCCTTGGCTATTGATGGT+AGG - chr8_2:60148292-60148311 None:intergenic 40.0%
TCTGTTTCCTTGGCTATTGA+TGG - chr8_2:60148296-60148315 None:intergenic 40.0%
TCTTTGCTGAATCTGTCATC+GGG - chr8_2:60148328-60148347 None:intergenic 40.0%
CTCTTTGCTGAATCTGTCAT+CGG - chr8_2:60148329-60148348 None:intergenic 40.0%
!! ATTTTAGGTGACAAAGCACG+AGG + chr8_2:60148523-60148542 Msa1258860:intron 40.0%
GTGAATGGAAAGGATGGAAT+TGG + chr8_2:60148558-60148577 Msa1258860:CDS 40.0%
GATGGAATTGGAGATCAGAA+GGG + chr8_2:60148570-60148589 Msa1258860:CDS 40.0%
ATGGAATTGGAGATCAGAAG+GGG + chr8_2:60148571-60148590 Msa1258860:CDS 40.0%
GAGATCAGAAGGGGATTTAT+TGG + chr8_2:60148580-60148599 Msa1258860:CDS 40.0%
!!! GGTGCATTTTTTACACCATC+AGG + chr8_2:60148608-60148627 Msa1258860:CDS 40.0%
!!! TTTTTTACACCATCAGGAGC+AGG + chr8_2:60148614-60148633 Msa1258860:CDS 40.0%
! CTAGTTGGTACAATAACGAC+TGG + chr8_2:60148692-60148711 Msa1258860:CDS 40.0%
GGTGTACTTGGTTGTAAGAA+AGG + chr8_2:60148719-60148738 Msa1258860:CDS 40.0%
! CAGGCTGGTCAATTAATTCA+AGG + chr8_2:60148786-60148805 Msa1258860:three_prime_UTR 40.0%
CTGGTCAATTAATTCAAGGG+AGG + chr8_2:60148790-60148809 Msa1258860:three_prime_UTR 40.0%
TTAATTCAAGGGAGGGAAGT+TGG + chr8_2:60148798-60148817 Msa1258860:three_prime_UTR 40.0%
GTTTGGTCATTTCTTTGGCT+AGG + chr8_2:60148890-60148909 Msa1258860:three_prime_UTR 40.0%
AGAGAGAAGGAAGAAGAGTG+AGG - chr8_2:60146864-60146883 None:intergenic 45.0%
ACCTCTTCAAGACCCTGATT+TGG + chr8_2:60146913-60146932 Msa1258860:CDS 45.0%
ACCAAATCAGGGTCTTGAAG+AGG - chr8_2:60146917-60146936 None:intergenic 45.0%
GCAGATTGTGCAATTGGGTT+CGG + chr8_2:60147288-60147307 Msa1258860:CDS 45.0%
TTCGGTAAGAATGCCATTGG+TGG + chr8_2:60147306-60147325 Msa1258860:CDS 45.0%
TTGAATCACGGCGAAACGAA+GGG - chr8_2:60147400-60147419 None:intergenic 45.0%
ACTAGCTCCTCTTCCATCAA+TGG - chr8_2:60147502-60147521 None:intergenic 45.0%
TAAACAAGGTGGGAATGCCA+TGG + chr8_2:60147602-60147621 Msa1258860:CDS 45.0%
TTCTCCACCCATAATGTCCT+GGG - chr8_2:60147638-60147657 None:intergenic 45.0%
AGAACAGTATCAGACGGTGA+TGG + chr8_2:60147654-60147673 Msa1258860:CDS 45.0%
! GCCTTGTTCAAAGAATGCCA+AGG + chr8_2:60147895-60147914 Msa1258860:CDS 45.0%
! ATGTGATGGTTTGCAGGTGT+AGG + chr8_2:60148194-60148213 Msa1258860:intron 45.0%
GGGCTACAAATCTGTTTCCT+TGG - chr8_2:60148306-60148325 None:intergenic 45.0%
TTTGCTGAATCTGTCATCGG+GGG - chr8_2:60148326-60148345 None:intergenic 45.0%
CTTTGCTGAATCTGTCATCG+GGG - chr8_2:60148327-60148346 None:intergenic 45.0%
CGATGACAGATTCAGCAAAG+AGG + chr8_2:60148327-60148346 Msa1258860:CDS 45.0%
CATCCTTTCCATTCACCTTC+TGG - chr8_2:60148554-60148573 None:intergenic 45.0%
CAGAAGGTGAATGGAAAGGA+TGG + chr8_2:60148552-60148571 Msa1258860:CDS 45.0%
GGATGGAATTGGAGATCAGA+AGG + chr8_2:60148569-60148588 Msa1258860:CDS 45.0%
GCAAGACCATCTTCTCTAGT+TGG + chr8_2:60148677-60148696 Msa1258860:CDS 45.0%
AGAGACAGTTGTTTGCTCGA+GGG - chr8_2:60148765-60148784 None:intergenic 45.0%
AGAGAGAAGGAAGAAGAGTG+AGG - chr8_2:60146864-60146883 None:intergenic 45.0%
ACCTCTTCAAGACCCTGATT+TGG + chr8_2:60146913-60146932 Msa1258860:CDS 45.0%
ACCAAATCAGGGTCTTGAAG+AGG - chr8_2:60146917-60146936 None:intergenic 45.0%
GCAGATTGTGCAATTGGGTT+CGG + chr8_2:60147288-60147307 Msa1258860:CDS 45.0%
TTCGGTAAGAATGCCATTGG+TGG + chr8_2:60147306-60147325 Msa1258860:CDS 45.0%
TTGAATCACGGCGAAACGAA+GGG - chr8_2:60147400-60147419 None:intergenic 45.0%
ACTAGCTCCTCTTCCATCAA+TGG - chr8_2:60147502-60147521 None:intergenic 45.0%
TAAACAAGGTGGGAATGCCA+TGG + chr8_2:60147602-60147621 Msa1258860:CDS 45.0%
TTCTCCACCCATAATGTCCT+GGG - chr8_2:60147638-60147657 None:intergenic 45.0%
AGAACAGTATCAGACGGTGA+TGG + chr8_2:60147654-60147673 Msa1258860:CDS 45.0%
! GCCTTGTTCAAAGAATGCCA+AGG + chr8_2:60147895-60147914 Msa1258860:CDS 45.0%
! ATGTGATGGTTTGCAGGTGT+AGG + chr8_2:60148194-60148213 Msa1258860:intron 45.0%
GGGCTACAAATCTGTTTCCT+TGG - chr8_2:60148306-60148325 None:intergenic 45.0%
TTTGCTGAATCTGTCATCGG+GGG - chr8_2:60148326-60148345 None:intergenic 45.0%
CTTTGCTGAATCTGTCATCG+GGG - chr8_2:60148327-60148346 None:intergenic 45.0%
CGATGACAGATTCAGCAAAG+AGG + chr8_2:60148327-60148346 Msa1258860:CDS 45.0%
CATCCTTTCCATTCACCTTC+TGG - chr8_2:60148554-60148573 None:intergenic 45.0%
CAGAAGGTGAATGGAAAGGA+TGG + chr8_2:60148552-60148571 Msa1258860:CDS 45.0%
GGATGGAATTGGAGATCAGA+AGG + chr8_2:60148569-60148588 Msa1258860:CDS 45.0%
GCAAGACCATCTTCTCTAGT+TGG + chr8_2:60148677-60148696 Msa1258860:CDS 45.0%
AGAGACAGTTGTTTGCTCGA+GGG - chr8_2:60148765-60148784 None:intergenic 45.0%
!! AATTAATTAATTATAGAATA+TGG + chr8_2:60148863-60148882 Msa1258860:three_prime_UTR 5.0%
!! AATTAATTAATTATAGAATA+TGG + chr8_2:60148863-60148882 Msa1258860:three_prime_UTR 5.0%
AGGGTCTTGAAGAGGTGAAG+AGG - chr8_2:60146909-60146928 None:intergenic 50.0%
! AACTTGGGGTACCTCTCATG+TGG + chr8_2:60147198-60147217 Msa1258860:CDS 50.0%
GGTTTCCACTTCCACATGAG+AGG - chr8_2:60147212-60147231 None:intergenic 50.0%
! TTGGAGGTGTGACCCAAACT+GGG + chr8_2:60147245-60147264 Msa1258860:CDS 50.0%
! GGGTTCGGTAAGAATGCCAT+TGG + chr8_2:60147303-60147322 Msa1258860:CDS 50.0%
! AGATTCTGGTGACGACGATC+CGG + chr8_2:60147356-60147375 Msa1258860:CDS 50.0%
!!! AAACGAAGGGTACCGGGTTT+TGG - chr8_2:60147387-60147406 None:intergenic 50.0%
CTTGAATCACGGCGAAACGA+AGG - chr8_2:60147401-60147420 None:intergenic 50.0%
GGAGCTAGTGTTCACATTGC+TGG + chr8_2:60147513-60147532 Msa1258860:CDS 50.0%
GCTAGTGTTCACATTGCTGG+TGG + chr8_2:60147516-60147535 Msa1258860:CDS 50.0%
TCTCCACCCATAATGTCCTG+GGG - chr8_2:60147637-60147656 None:intergenic 50.0%
GTTCTCCACCCATAATGTCC+TGG - chr8_2:60147639-60147658 None:intergenic 50.0%
GGGTGGAGAACAGTATCAGA+CGG + chr8_2:60147648-60147667 Msa1258860:CDS 50.0%
TGGTGGAAGTCATGTTTGGG+TGG + chr8_2:60147689-60147708 Msa1258860:CDS 50.0%
TGAAAAGTGGGAAAAGGGGG+TGG + chr8_2:60148030-60148049 Msa1258860:intron 50.0%
GAAAAGTGGGAAAAGGGGGT+GGG + chr8_2:60148031-60148050 Msa1258860:intron 50.0%
! ATGGTTTGCAGGTGTAGGCA+TGG + chr8_2:60148199-60148218 Msa1258860:intron 50.0%
TTTACACCATCAGGAGCAGG+AGG + chr8_2:60148617-60148636 Msa1258860:CDS 50.0%
GGTACAATAACGACTGGTGC+TGG + chr8_2:60148698-60148717 Msa1258860:CDS 50.0%
GAGACAGTTGTTTGCTCGAG+GGG - chr8_2:60148764-60148783 None:intergenic 50.0%
CAGAGACAGTTGTTTGCTCG+AGG - chr8_2:60148766-60148785 None:intergenic 50.0%
GAGCAAACAACTGTCTCTGC+AGG + chr8_2:60148767-60148786 Msa1258860:three_prime_UTR 50.0%
AAACAACTGTCTCTGCAGGC+TGG + chr8_2:60148771-60148790 Msa1258860:three_prime_UTR 50.0%
AGGGTCTTGAAGAGGTGAAG+AGG - chr8_2:60146909-60146928 None:intergenic 50.0%
! AACTTGGGGTACCTCTCATG+TGG + chr8_2:60147198-60147217 Msa1258860:CDS 50.0%
GGTTTCCACTTCCACATGAG+AGG - chr8_2:60147212-60147231 None:intergenic 50.0%
! TTGGAGGTGTGACCCAAACT+GGG + chr8_2:60147245-60147264 Msa1258860:CDS 50.0%
! GGGTTCGGTAAGAATGCCAT+TGG + chr8_2:60147303-60147322 Msa1258860:CDS 50.0%
! AGATTCTGGTGACGACGATC+CGG + chr8_2:60147356-60147375 Msa1258860:CDS 50.0%
!!! AAACGAAGGGTACCGGGTTT+TGG - chr8_2:60147387-60147406 None:intergenic 50.0%
CTTGAATCACGGCGAAACGA+AGG - chr8_2:60147401-60147420 None:intergenic 50.0%
GGAGCTAGTGTTCACATTGC+TGG + chr8_2:60147513-60147532 Msa1258860:CDS 50.0%
GCTAGTGTTCACATTGCTGG+TGG + chr8_2:60147516-60147535 Msa1258860:CDS 50.0%
TCTCCACCCATAATGTCCTG+GGG - chr8_2:60147637-60147656 None:intergenic 50.0%
GTTCTCCACCCATAATGTCC+TGG - chr8_2:60147639-60147658 None:intergenic 50.0%
GGGTGGAGAACAGTATCAGA+CGG + chr8_2:60147648-60147667 Msa1258860:CDS 50.0%
TGGTGGAAGTCATGTTTGGG+TGG + chr8_2:60147689-60147708 Msa1258860:CDS 50.0%
TGAAAAGTGGGAAAAGGGGG+TGG + chr8_2:60148030-60148049 Msa1258860:intron 50.0%
GAAAAGTGGGAAAAGGGGGT+GGG + chr8_2:60148031-60148050 Msa1258860:intron 50.0%
! ATGGTTTGCAGGTGTAGGCA+TGG + chr8_2:60148199-60148218 Msa1258860:intron 50.0%
TTTACACCATCAGGAGCAGG+AGG + chr8_2:60148617-60148636 Msa1258860:CDS 50.0%
GGTACAATAACGACTGGTGC+TGG + chr8_2:60148698-60148717 Msa1258860:CDS 50.0%
GAGACAGTTGTTTGCTCGAG+GGG - chr8_2:60148764-60148783 None:intergenic 50.0%
CAGAGACAGTTGTTTGCTCG+AGG - chr8_2:60148766-60148785 None:intergenic 50.0%
GAGCAAACAACTGTCTCTGC+AGG + chr8_2:60148767-60148786 Msa1258860:three_prime_UTR 50.0%
AAACAACTGTCTCTGCAGGC+TGG + chr8_2:60148771-60148790 Msa1258860:three_prime_UTR 50.0%
GGGTACCTCTCATGTGGAAG+TGG + chr8_2:60147204-60147223 Msa1258860:CDS 55.0%
! GTTGGAGGTGTGACCCAAAC+TGG + chr8_2:60147244-60147263 Msa1258860:CDS 55.0%
GATCCGGTGACACCAAAACC+CGG + chr8_2:60147372-60147391 Msa1258860:CDS 55.0%
!!! GTACCGGGTTTTGGTGTCAC+CGG - chr8_2:60147378-60147397 None:intergenic 55.0%
AAGGTGGGAATGCCATGGTG+AGG + chr8_2:60147607-60147626 Msa1258860:CDS 55.0%
AGGTGGGAATGCCATGGTGA+GGG + chr8_2:60147608-60147627 Msa1258860:CDS 55.0%
AGGGACTCCCCAGGACATTA+TGG + chr8_2:60147627-60147646 Msa1258860:CDS 55.0%
GGGACTCCCCAGGACATTAT+GGG + chr8_2:60147628-60147647 Msa1258860:CDS 55.0%
ACTCCCCAGGACATTATGGG+TGG + chr8_2:60147631-60147650 Msa1258860:CDS 55.0%
AGGATGCGCCAGAAGGTGAA+TGG + chr8_2:60148543-60148562 Msa1258860:CDS 55.0%
GCGCCAGAAGGTGAATGGAA+AGG + chr8_2:60148548-60148567 Msa1258860:CDS 55.0%
!! ACGACTGGTGCTGGTGTACT+TGG + chr8_2:60148707-60148726 Msa1258860:CDS 55.0%
GGGTACCTCTCATGTGGAAG+TGG + chr8_2:60147204-60147223 Msa1258860:CDS 55.0%
! GTTGGAGGTGTGACCCAAAC+TGG + chr8_2:60147244-60147263 Msa1258860:CDS 55.0%
GATCCGGTGACACCAAAACC+CGG + chr8_2:60147372-60147391 Msa1258860:CDS 55.0%
!!! GTACCGGGTTTTGGTGTCAC+CGG - chr8_2:60147378-60147397 None:intergenic 55.0%
AAGGTGGGAATGCCATGGTG+AGG + chr8_2:60147607-60147626 Msa1258860:CDS 55.0%
AGGTGGGAATGCCATGGTGA+GGG + chr8_2:60147608-60147627 Msa1258860:CDS 55.0%
AGGGACTCCCCAGGACATTA+TGG + chr8_2:60147627-60147646 Msa1258860:CDS 55.0%
GGGACTCCCCAGGACATTAT+GGG + chr8_2:60147628-60147647 Msa1258860:CDS 55.0%
ACTCCCCAGGACATTATGGG+TGG + chr8_2:60147631-60147650 Msa1258860:CDS 55.0%
AGGATGCGCCAGAAGGTGAA+TGG + chr8_2:60148543-60148562 Msa1258860:CDS 55.0%
GCGCCAGAAGGTGAATGGAA+AGG + chr8_2:60148548-60148567 Msa1258860:CDS 55.0%
!! ACGACTGGTGCTGGTGTACT+TGG + chr8_2:60148707-60148726 Msa1258860:CDS 55.0%
!! ACGGCGAAACGAAGGGTACC+GGG - chr8_2:60147393-60147412 None:intergenic 60.0%
! CACGGCGAAACGAAGGGTAC+CGG - chr8_2:60147394-60147413 None:intergenic 60.0%
AAGCACGAGGATGCGCCAGA+AGG + chr8_2:60148536-60148555 Msa1258860:CDS 60.0%
GATGCTCCTCCTGCTCCTGA+TGG - chr8_2:60148626-60148645 None:intergenic 60.0%
!! ACGGCGAAACGAAGGGTACC+GGG - chr8_2:60147393-60147412 None:intergenic 60.0%
! CACGGCGAAACGAAGGGTAC+CGG - chr8_2:60147394-60147413 None:intergenic 60.0%
AAGCACGAGGATGCGCCAGA+AGG + chr8_2:60148536-60148555 Msa1258860:CDS 60.0%
GATGCTCCTCCTGCTCCTGA+TGG - chr8_2:60148626-60148645 None:intergenic 60.0%
TCCTGGGGAGTCCCTCACCA+TGG - chr8_2:60147622-60147641 None:intergenic 65.0%
TCCTGGGGAGTCCCTCACCA+TGG - chr8_2:60147622-60147641 None:intergenic 65.0%
GCCATGGTGAGGGACTCCCC+AGG + chr8_2:60147618-60147637 Msa1258860:CDS 70.0%
GCCATGGTGAGGGACTCCCC+AGG + chr8_2:60147618-60147637 Msa1258860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 60146808 60149114 60146808 ID=Msa1258860;Name=Msa1258860
chr8_2 mRNA 60146808 60149114 60146808 ID=Msa1258860-mRNA-1;Parent=Msa1258860;Name=Msa1258860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=34|1|1|1|1|1|4|360|407
chr8_2 exon 60146808 60146954 60146808 ID=Msa1258860-mRNA-1:exon:18854;Parent=Msa1258860-mRNA-1
chr8_2 exon 60147170 60147916 60147170 ID=Msa1258860-mRNA-1:exon:18855;Parent=Msa1258860-mRNA-1
chr8_2 exon 60148210 60148348 60148210 ID=Msa1258860-mRNA-1:exon:18856;Parent=Msa1258860-mRNA-1
chr8_2 exon 60148530 60149114 60148530 ID=Msa1258860-mRNA-1:exon:18857;Parent=Msa1258860-mRNA-1
chr8_2 five_prime_UTR 60146808 60146841 60146808 ID=Msa1258860-mRNA-1:five_prime_utr;Parent=Msa1258860-mRNA-1
chr8_2 CDS 60146842 60146954 60146842 ID=Msa1258860-mRNA-1:cds;Parent=Msa1258860-mRNA-1
chr8_2 CDS 60147170 60147916 60147170 ID=Msa1258860-mRNA-1:cds;Parent=Msa1258860-mRNA-1
chr8_2 CDS 60148210 60148348 60148210 ID=Msa1258860-mRNA-1:cds;Parent=Msa1258860-mRNA-1
chr8_2 CDS 60148530 60148754 60148530 ID=Msa1258860-mRNA-1:cds;Parent=Msa1258860-mRNA-1
chr8_2 three_prime_UTR 60148755 60149114 60148755 ID=Msa1258860-mRNA-1:three_prime_utr;Parent=Msa1258860-mRNA-1
Gene Sequence

>Msa1258860

ATGACAACTACAACCAATTCCTCACTCTTCTTCCTTCTCTCTCTCCTCACTTTTTCTCTCATTTCCTCTTCACCTCTTCAAGACCCTGATTTGGTTACACAAGAAGTTAACAGGAAAATCAATGGCTCTTTAGCTAGGAGAAACTTGGGGTACCTCTCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGACCCAAACTGGGAAAAAAACAGACAAAGACTAGCAGATTGTGCAATTGGGTTCGGTAAGAATGCCATTGGTGGTAAAAATGGTAAAATCTACGTCGTAACAGATTCTGGTGACGACGATCCGGTGACACCAAAACCCGGTACCCTTCGTTTCGCCGTGATTCAAGACGAACCATTATGGATAATCTTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAGCTTATAATGAATTCATTCAAGACCATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGTGGTCCATGTATTACAATTCAGTATGTGACTAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGGAATGCCATGGTGAGGGACTCCCCAGGACATTATGGGTGGAGAACAGTATCAGACGGTGATGGTGTTTCAATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATTCATGGGTCCACTGCAATTACCATCTCTAACAATTATATGACTCACCATGATAAAGTTATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGTTATTTTCACGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCTACCATCAATAGCCAAGGAAACAGATTTGTAGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCGCCAGAAGGTGAATGGAAAGGATGGAATTGGAGATCAGAAGGGGATTTATTGGTAAATGGTGCATTTTTTACACCATCAGGAGCAGGAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACGACTGGTGCTGGTGTACTTGGTTGTAAGAAAGGTTCTCGTTGCTGA
Protein sequence

>Msa1258860

MTTTTNSSLFFLLSLLTFSLISSSPLQDPDLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLVNGAFFTPSGAGGASSSYARASSLSARPSSLVGTITTGAGVLGCKKGSRC*