Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330140 | XP_003608891.1 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330140 | sp|Q94BN0|BT2_ARATH | 61.515 | 330 | 114 | 6 | 15 | 332 | 32 | 360 | 2.00e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330140 | G7JMM8 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1330140 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1258870 | Msa1330140 | 0.939381 | 1.398597e-99 | -8.615850e-47 |
| Msa1330140 | Msa1330150 | 0.995348 | 2.242284e-215 | -8.615850e-47 |
| Msa1330140 | Msa1330200 | 0.989277 | 1.955397e-177 | -8.615850e-47 |
| Msa1330140 | Msa1369800 | 0.993877 | 7.016045e-203 | -8.615850e-47 |
| Msa1208560 | Msa1330140 | 0.982044 | 4.337163e-154 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330140 | MtrunA17_Chr4g0058071 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| Msa1330140 | MtrunA17_Chr3g0116501 | 58.621 | 203 | 81 | 2 | 87 | 289 | 1 | 200 | 1.57e-86 | 260 |
| Msa1330140 | MtrunA17_Chr5g0401281 | 45.973 | 298 | 154 | 7 | 18 | 313 | 68 | 360 | 1.56e-84 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330140 | AT3G48360.1 | 61.515 | 330 | 114 | 6 | 15 | 332 | 32 | 360 | 2.03e-133 | 385 |
| Msa1330140 | AT5G63160.1 | 62.540 | 315 | 108 | 5 | 14 | 319 | 22 | 335 | 2.64e-130 | 377 |
| Msa1330140 | AT3G48360.2 | 63.636 | 286 | 92 | 5 | 15 | 289 | 32 | 316 | 3.39e-120 | 351 |
| Msa1330140 | AT5G63160.2 | 63.732 | 284 | 94 | 4 | 14 | 289 | 22 | 304 | 3.16e-119 | 347 |
| Msa1330140 | AT5G63160.3 | 64.634 | 246 | 79 | 4 | 81 | 319 | 6 | 250 | 8.10e-104 | 307 |
| Msa1330140 | AT3G48360.3 | 62.745 | 255 | 85 | 4 | 87 | 332 | 1 | 254 | 1.59e-103 | 305 |
| Msa1330140 | AT5G67480.1 | 45.364 | 302 | 159 | 6 | 18 | 317 | 61 | 358 | 7.24e-83 | 257 |
| Msa1330140 | AT5G67480.3 | 45.364 | 302 | 159 | 6 | 18 | 317 | 61 | 358 | 7.24e-83 | 257 |
| Msa1330140 | AT5G67480.2 | 45.364 | 302 | 159 | 6 | 18 | 317 | 72 | 369 | 9.61e-83 | 257 |
| Msa1330140 | AT4G37610.1 | 42.904 | 303 | 164 | 8 | 18 | 317 | 56 | 352 | 6.86e-76 | 239 |
| Msa1330140 | AT1G05690.1 | 41.528 | 301 | 170 | 5 | 18 | 317 | 55 | 350 | 1.82e-74 | 235 |
| Msa1330140 | AT1G55760.1 | 33.835 | 133 | 79 | 4 | 18 | 147 | 165 | 291 | 6.35e-13 | 69.3 |
| Msa1330140 | AT3G56230.1 | 24.845 | 161 | 120 | 1 | 25 | 184 | 120 | 280 | 2.11e-12 | 67.4 |
Find 115 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGTGTGGTCTTATTTA+AGG | 0.182537 | 8_4:-49253752 | None:intergenic |
| TGGAAGGAACGCCGTGAATT+TGG | 0.203367 | 8_4:-49254151 | None:intergenic |
| CTTGCAATGTTCCTCTTTGC+AGG | 0.245278 | 8_4:+49255059 | Msa1330140:CDS |
| TGCCCTCTCATAAGATTCTA+AGG | 0.266164 | 8_4:+49257301 | Msa1330140:three_prime_UTR |
| CCTTGCTAGTAGTTTCCATT+TGG | 0.271352 | 8_4:-49256965 | None:intergenic |
| GTGAATTTGGATTATTCTTT+CGG | 0.293435 | 8_4:-49254138 | None:intergenic |
| GTGAATAAAGACATCATATT+CGG | 0.296060 | 8_4:-49253916 | None:intergenic |
| TTTGCTTGAAATGTAAATTT+TGG | 0.310791 | 8_4:+49257245 | Msa1330140:three_prime_UTR |
| TTATAAATTTAGTGATTATT+CGG | 0.311689 | 8_4:+49257402 | Msa1330140:three_prime_UTR |
| TTCTGAGGCGATGGAGTGTT+TGG | 0.329039 | 8_4:+49254814 | Msa1330140:CDS |
| ACTTGATATCCTCCGCTTCA+TGG | 0.330110 | 8_4:+49254569 | Msa1330140:CDS |
| GACCTCCATTGGTGTGGTTT+GGG | 0.335478 | 8_4:-49253886 | None:intergenic |
| AAGGTTATTGTTAGTGTTAG+TGG | 0.335935 | 8_4:+49257191 | Msa1330140:three_prime_UTR |
| CTTGCTAGTAGTTTCCATTT+GGG | 0.348881 | 8_4:-49256964 | None:intergenic |
| AATCGTGGGATCAGATGTTT+TGG | 0.358065 | 8_4:+49257069 | Msa1330140:CDS |
| ATTTAAGGAAGGGAAGATAT+TGG | 0.363883 | 8_4:-49253737 | None:intergenic |
| CGACCTCCATTGGTGTGGTT+TGG | 0.364602 | 8_4:-49253887 | None:intergenic |
| TGCAAGAATCATCAGTTTGT+TGG | 0.365276 | 8_4:-49255042 | None:intergenic |
| TCTGATCCCACGATTGTCTA+TGG | 0.399851 | 8_4:-49257061 | None:intergenic |
| TCAATAATGTTCTCGAAAAC+AGG | 0.405232 | 8_4:-49254092 | None:intergenic |
| CAGTTGCACGGAGGATGAAA+TGG | 0.408781 | 8_4:+49254299 | Msa1330140:intron |
| AGAGGGTGAAGGGAGGCTGC+TGG | 0.412837 | 8_4:+49254972 | Msa1330140:CDS |
| AGGAGAATTATTGTGATGTT+TGG | 0.418373 | 8_4:-49253833 | None:intergenic |
| ACCAGGATGCTTGTGTGGGC+TGG | 0.439380 | 8_4:-49253960 | None:intergenic |
| TTCAAGCACAGGATCATGTT+TGG | 0.441776 | 8_4:-49254547 | None:intergenic |
| CGCCAGGCTCTGCGATGCAC+CGG | 0.448288 | 8_4:+49254446 | Msa1330140:CDS |
| CAGACAATTTCAATTGAGAA+TGG | 0.449145 | 8_4:+49256918 | Msa1330140:intron |
| CATGTGTTGTAGATTGAAAG+AGG | 0.450361 | 8_4:-49253853 | None:intergenic |
| TGAATAAAGACATCATATTC+GGG | 0.450560 | 8_4:-49253915 | None:intergenic |
| TTATTAACCTCAACATGGTA+TGG | 0.459852 | 8_4:-49254872 | None:intergenic |
| TTGAACCGCGTTGAAGTGAT+TGG | 0.469408 | 8_4:-49254499 | None:intergenic |
| TGAGAATGGAGCAAGAGAAA+AGG | 0.470643 | 8_4:+49256932 | Msa1330140:CDS |
| GATGAAAGCGGTTACGGCGG+TGG | 0.476910 | 8_4:-49254171 | None:intergenic |
| GTAGCCGATGAAAGCGGTTA+CGG | 0.477754 | 8_4:-49254177 | None:intergenic |
| GTCTTTATTCACACTTCTGA+TGG | 0.479577 | 8_4:+49253927 | Msa1330140:CDS |
| AGCAAATTCTCCACCTGTCA+AGG | 0.481574 | 8_4:+49254911 | Msa1330140:CDS |
| CTTAAATAAGACCACACCCT+TGG | 0.482693 | 8_4:+49253753 | Msa1330140:five_prime_UTR |
| TGTTAGTGGCTCTTCAATTG+AGG | 0.489370 | 8_4:+49257205 | Msa1330140:three_prime_UTR |
| AAAGGAAAGATGATCCCAAA+TGG | 0.490170 | 8_4:+49256950 | Msa1330140:CDS |
| CAGAAGCTGAAGCCCTTGAC+AGG | 0.502805 | 8_4:-49254924 | None:intergenic |
| AACTAACCAGGATGCTTGTG+TGG | 0.507204 | 8_4:-49253965 | None:intergenic |
| CTCTTTCAATCTACAACACA+TGG | 0.509417 | 8_4:+49253854 | Msa1330140:exon |
| CATCGCAGAGCCTGGCGAGT+TGG | 0.510849 | 8_4:-49254440 | None:intergenic |
| GGGTTTCAATTGTGTACGTA+AGG | 0.511616 | 8_4:+49257172 | Msa1330140:three_prime_UTR |
| TGCGGAACTTTCTGAGGCGA+TGG | 0.528118 | 8_4:+49254805 | Msa1330140:CDS |
| TCGGCTACCTCTACTCATCC+AGG | 0.528548 | 8_4:+49254192 | Msa1330140:CDS |
| TATAGAGGAGAGAGAAATCG+AGG | 0.529791 | 8_4:+49254756 | Msa1330140:intron |
| GGTGTGGTCTTATTTAAGGA+AGG | 0.535736 | 8_4:-49253748 | None:intergenic |
| GAAAGAATAATCCAAATTCA+CGG | 0.535992 | 8_4:+49254140 | Msa1330140:CDS |
| TCCAGCCCACACAAGCATCC+TGG | 0.542058 | 8_4:+49253959 | Msa1330140:CDS |
| CTCAAACAAAGATGCATCAA+AGG | 0.544591 | 8_4:+49254375 | Msa1330140:CDS |
| TCGGGTAAGACGACCTCCAT+TGG | 0.548298 | 8_4:-49253897 | None:intergenic |
| GTGTTTGGAGCATATATGTA+CGG | 0.548333 | 8_4:+49254829 | Msa1330140:CDS |
| GAGGATGAAATGGACAAATA+CGG | 0.550313 | 8_4:+49254309 | Msa1330140:CDS |
| ACCGCCGTAACCGCTTTCAT+CGG | 0.550954 | 8_4:+49254173 | Msa1330140:CDS |
| ACACGTGAGATAGTGCCAAC+AGG | 0.553618 | 8_4:-49254338 | None:intergenic |
| GTGTGGTCTTATTTAAGGAA+GGG | 0.556683 | 8_4:-49253747 | None:intergenic |
| ACATGCAAGAAGAGGGTGAA+GGG | 0.559984 | 8_4:+49254962 | Msa1330140:CDS |
| ATGGAAACTACTAGCAAGGA+AGG | 0.562140 | 8_4:+49256969 | Msa1330140:CDS |
| TGGATGTACTCCAACTCGCC+AGG | 0.562979 | 8_4:+49254430 | Msa1330140:CDS |
| CGCTTTCGTCCATGAAGCGG+AGG | 0.563948 | 8_4:-49254578 | None:intergenic |
| ATGCATCTTTGTTTGAGTTG+CGG | 0.567744 | 8_4:-49254369 | None:intergenic |
| GGGTGAAGGGAGGCTGCTGG+AGG | 0.568462 | 8_4:+49254975 | Msa1330140:CDS |
| TTTCGCTTTCGTCCATGAAG+CGG | 0.570395 | 8_4:-49254581 | None:intergenic |
| AAAGCGGTTACGGCGGTGGA+AGG | 0.571422 | 8_4:-49254167 | None:intergenic |
| GCATCAAAGGTCTTGTTCAA+CGG | 0.574251 | 8_4:+49254388 | Msa1330140:CDS |
| CAAATACGGAATCCACCTGT+TGG | 0.576636 | 8_4:+49254323 | Msa1330140:CDS |
| AAGGAAGGTTGCCTCAGCTA+AGG | 0.578016 | 8_4:+49256984 | Msa1330140:CDS |
| CCAAATGGAAACTACTAGCA+AGG | 0.585999 | 8_4:+49256965 | Msa1330140:CDS |
| CTCCTTAGAATCTTATGAGA+GGG | 0.589078 | 8_4:-49257303 | None:intergenic |
| TTGGAGCATATATGTACGGA+AGG | 0.591498 | 8_4:+49254833 | Msa1330140:CDS |
| AGGATATCAAGTTCAAGCAC+AGG | 0.591612 | 8_4:-49254558 | None:intergenic |
| GGAAGCATAGAGAGGAGCAA+GGG | 0.591806 | 8_4:+49254777 | Msa1330140:CDS |
| ATACAACGGATACGGAGATC+CGG | 0.598941 | 8_4:-49254465 | None:intergenic |
| GCAAATTCTCCACCTGTCAA+GGG | 0.602836 | 8_4:+49254912 | Msa1330140:CDS |
| GTTGTATGCGGAACTTTCTG+AGG | 0.605270 | 8_4:+49254799 | Msa1330140:CDS |
| GTAGCTTCATACAACGGATA+CGG | 0.605346 | 8_4:-49254473 | None:intergenic |
| GAATACCCAAACCACACCAA+TGG | 0.607266 | 8_4:+49253881 | Msa1330140:CDS |
| TCGGAGCTGCGTTGTTTACG+CGG | 0.613669 | 8_4:-49254119 | None:intergenic |
| AAGCTGAAGCCCTTGACAGG+TGG | 0.613763 | 8_4:-49254921 | None:intergenic |
| AGGAAGCATAGAGAGGAGCA+AGG | 0.616562 | 8_4:+49254776 | Msa1330140:CDS |
| TAAACAACTAACCTGCAAAG+AGG | 0.620623 | 8_4:-49255070 | None:intergenic |
| CCTCCTTAGAATCTTATGAG+AGG | 0.623054 | 8_4:-49257304 | None:intergenic |
| CAGGTGGAGAATTTGCTACA+CGG | 0.624063 | 8_4:-49254905 | None:intergenic |
| CGTTGGACCATACCATGTTG+AGG | 0.625619 | 8_4:+49254865 | Msa1330140:CDS |
| TACCCAAACCACACCAATGG+AGG | 0.626720 | 8_4:+49253884 | Msa1330140:CDS |
| TAAGACGACCTCCATTGGTG+TGG | 0.627752 | 8_4:-49253892 | None:intergenic |
| GATGATGATTCTGAGATCCA+AGG | 0.628950 | 8_4:-49253770 | None:intergenic |
| TCTTATGAGAGGGCAAAATG+AGG | 0.633014 | 8_4:-49257293 | None:intergenic |
| CTACAAACCTGGATGAGTAG+AGG | 0.636623 | 8_4:-49254199 | None:intergenic |
| ATATTGTAACAATAATGTCT+CGG | 0.638704 | 8_4:+49257101 | Msa1330140:CDS |
| GCTGGAGGTGCAAACGTATG+TGG | 0.643612 | 8_4:+49254990 | Msa1330140:CDS |
| TTTCTTTATTAACCTCAACA+TGG | 0.646312 | 8_4:-49254877 | None:intergenic |
| GATTCTGAGATCCAAGGGTG+TGG | 0.651578 | 8_4:-49253764 | None:intergenic |
| GAAATCGAGGAAGCATAGAG+AGG | 0.652687 | 8_4:+49254769 | Msa1330140:CDS |
| GCACAGGATCATGTTTGGTG+AGG | 0.659496 | 8_4:-49254542 | None:intergenic |
| GAGTGACCATAGACAATCGT+GGG | 0.660262 | 8_4:+49257055 | Msa1330140:CDS |
| GCCGATGAAAGCGGTTACGG+CGG | 0.661788 | 8_4:-49254174 | None:intergenic |
| TGCAAGAAGAGGGTGAAGGG+AGG | 0.663791 | 8_4:+49254965 | Msa1330140:CDS |
| CGTGAGATAGTGCCAACAGG+TGG | 0.667055 | 8_4:-49254335 | None:intergenic |
| ATGATGATTCTGAGATCCAA+GGG | 0.669791 | 8_4:-49253769 | None:intergenic |
| GGAAAACATAACCTTAGCTG+AGG | 0.673989 | 8_4:-49256995 | None:intergenic |
| GTAGAGGTAGCCGATGAAAG+CGG | 0.674697 | 8_4:-49254183 | None:intergenic |
| AACATGCAAGAAGAGGGTGA+AGG | 0.677915 | 8_4:+49254961 | Msa1330140:CDS |
| TGGAGCATATATGTACGGAA+GGG | 0.681205 | 8_4:+49254834 | Msa1330140:CDS |
| CCTCTCATAAGATTCTAAGG+AGG | 0.681421 | 8_4:+49257304 | Msa1330140:three_prime_UTR |
| AGAGGAGCAAGGGTTGTATG+CGG | 0.686478 | 8_4:+49254787 | Msa1330140:CDS |
| TGGTGAGTAGCTTCATACAA+CGG | 0.689964 | 8_4:-49254479 | None:intergenic |
| ACTAACCAGGATGCTTGTGT+GGG | 0.692654 | 8_4:-49253964 | None:intergenic |
| CTCGAAAACAGGAGATACCG+AGG | 0.700797 | 8_4:-49254081 | None:intergenic |
| AGAGTGACCATAGACAATCG+TGG | 0.708473 | 8_4:+49257054 | Msa1330140:CDS |
| ACGGTTAACATCAGAAAACG+TGG | 0.721632 | 8_4:+49254407 | Msa1330140:CDS |
| AACATGGTATGGTCCAACGT+CGG | 0.721753 | 8_4:-49254861 | None:intergenic |
| GTTAACATCAGAAAACGTGG+TGG | 0.747454 | 8_4:+49254410 | Msa1330140:CDS |
| ACTCACCAATCACTTCAACG+CGG | 0.835800 | 8_4:+49254494 | Msa1330140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATATACAATAAATTAA+CGG | - | chr8_4:49256259-49256278 | None:intergenic | 10.0% |
| !! | TATATTGTATATTTGTATAT+GGG | + | chr8_4:49256270-49256289 | Msa1330140:intron | 10.0% |
| !!! | AGATATTTATTAATTTTGAT+GGG | - | chr8_4:49256751-49256770 | None:intergenic | 10.0% |
| !!! | TAGATATTTATTAATTTTGA+TGG | - | chr8_4:49256752-49256771 | None:intergenic | 10.0% |
| !!! | AAATAATTAAGCTATTTTTT+TGG | + | chr8_4:49256888-49256907 | Msa1330140:intron | 10.0% |
| !! | TTATAAATTTAGTGATTATT+CGG | + | chr8_4:49257402-49257421 | Msa1330140:three_prime_UTR | 10.0% |
| !! | TTAAGAAAAATACAAACAAT+TGG | - | chr8_4:49253996-49254015 | None:intergenic | 15.0% |
| !! | ATAATCATGGAATTAATTAA+AGG | + | chr8_4:49255211-49255230 | Msa1330140:intron | 15.0% |
| !! | TAATCATGGAATTAATTAAA+GGG | + | chr8_4:49255212-49255231 | Msa1330140:intron | 15.0% |
| !!! | ACTTATTTTATATTTGAGAT+TGG | + | chr8_4:49255572-49255591 | Msa1330140:intron | 15.0% |
| !!! | AATTTCATTTTTGTTTAGAT+GGG | + | chr8_4:49255802-49255821 | Msa1330140:intron | 15.0% |
| !! | CATTAATTATTTCATAATCA+AGG | - | chr8_4:49256017-49256036 | None:intergenic | 15.0% |
| !!! | ATGTTCAAATATTCTTTTTT+AGG | - | chr8_4:49256104-49256123 | None:intergenic | 15.0% |
| !! | GTATATTGTATATTTGTATA+TGG | + | chr8_4:49256269-49256288 | Msa1330140:intron | 15.0% |
| !! | ATATTGTATATTTGTATATG+GGG | + | chr8_4:49256271-49256290 | Msa1330140:intron | 15.0% |
| !!! | TTTTTAGAGTTTATGGTTTT+GGG | - | chr8_4:49253810-49253829 | None:intergenic | 20.0% |
| !!! | TTTTTTAGAGTTTATGGTTT+TGG | - | chr8_4:49253811-49253830 | None:intergenic | 20.0% |
| !!! | TGTTTGTATTTTTCTTAACT+CGG | + | chr8_4:49253998-49254017 | Msa1330140:intron | 20.0% |
| !! | GTTGTAAATCAATAATTAAC+AGG | + | chr8_4:49254058-49254077 | Msa1330140:intron | 20.0% |
| !! | TGATTATTATTGTGTTATAG+AGG | + | chr8_4:49254741-49254760 | Msa1330140:intron | 20.0% |
| !! | TTATGACCGAAATAAAAAAT+CGG | - | chr8_4:49255484-49255503 | None:intergenic | 20.0% |
| !! | TTATTTCGGTCATAAATATA+AGG | + | chr8_4:49255489-49255508 | Msa1330140:intron | 20.0% |
| !!! | TATTTTATATTTGAGATTGG+AGG | + | chr8_4:49255575-49255594 | Msa1330140:intron | 20.0% |
| !!! | CAATTTCATTTTTGTTTAGA+TGG | + | chr8_4:49255801-49255820 | Msa1330140:intron | 20.0% |
| !!! | TAAGTCTCTTGATATTTTTA+GGG | + | chr8_4:49256364-49256383 | Msa1330140:intron | 20.0% |
| !!! | CTAATTTTATAGAGATGAAT+CGG | + | chr8_4:49256597-49256616 | Msa1330140:intron | 20.0% |
| !! | ATATTGTAACAATAATGTCT+CGG | + | chr8_4:49257101-49257120 | Msa1330140:CDS | 20.0% |
| !!! | TTTGCTTGAAATGTAAATTT+TGG | + | chr8_4:49257245-49257264 | Msa1330140:three_prime_UTR | 20.0% |
| !!! | TTGGTGTTTTTTAGAGTTTA+TGG | - | chr8_4:49253817-49253836 | None:intergenic | 25.0% |
| ! | TGAATAAAGACATCATATTC+GGG | - | chr8_4:49253918-49253937 | None:intergenic | 25.0% |
| ! | GTGAATAAAGACATCATATT+CGG | - | chr8_4:49253919-49253938 | None:intergenic | 25.0% |
| ! | GTGAATTTGGATTATTCTTT+CGG | - | chr8_4:49254141-49254160 | None:intergenic | 25.0% |
| ! | GAAAGAATAATCCAAATTCA+CGG | + | chr8_4:49254140-49254159 | Msa1330140:CDS | 25.0% |
| ! | TTTCTTTATTAACCTCAACA+TGG | - | chr8_4:49254880-49254899 | None:intergenic | 25.0% |
| !! | AGCTCTAACAAAAGATTATA+AGG | - | chr8_4:49255154-49255173 | None:intergenic | 25.0% |
| ! | AGAATAGTACATCATAATCA+TGG | + | chr8_4:49255198-49255217 | Msa1330140:intron | 25.0% |
| !!! | GTTGTTCCGATTTTTTATTT+CGG | + | chr8_4:49255475-49255494 | Msa1330140:intron | 25.0% |
| ! | AAAGCTGATGTATTTGATTA+AGG | + | chr8_4:49255527-49255546 | Msa1330140:intron | 25.0% |
| !!! | TTTTGTTTAGATGGGTAAAA+TGG | + | chr8_4:49255810-49255829 | Msa1330140:intron | 25.0% |
| !!! | AGAAACTATTTTGACCAAAA+TGG | - | chr8_4:49255859-49255878 | None:intergenic | 25.0% |
| ! | TGAACATTGCAATATTTGAT+TGG | - | chr8_4:49256298-49256317 | None:intergenic | 25.0% |
| !! | CTAAGTCTCTTGATATTTTT+AGG | + | chr8_4:49256363-49256382 | Msa1330140:intron | 25.0% |
| ! | AAGGTAGCTAATAATAACTT+GGG | - | chr8_4:49256669-49256688 | None:intergenic | 25.0% |
| !!! | TGCCTTATCTTATTTTGAAA+AGG | + | chr8_4:49257150-49257169 | Msa1330140:three_prime_UTR | 25.0% |
| !!! | GCCTTATCTTATTTTGAAAA+GGG | + | chr8_4:49257151-49257170 | Msa1330140:three_prime_UTR | 25.0% |
| !!! | CCTTATCTTATTTTGAAAAG+GGG | + | chr8_4:49257152-49257171 | Msa1330140:three_prime_UTR | 25.0% |
| ATTTAAGGAAGGGAAGATAT+TGG | - | chr8_4:49253740-49253759 | None:intergenic | 30.0% | |
| AGGAGAATTATTGTGATGTT+TGG | - | chr8_4:49253836-49253855 | None:intergenic | 30.0% | |
| ATAATCGTTAGTCCTTGAAT+CGG | - | chr8_4:49254027-49254046 | None:intergenic | 30.0% | |
| AATCAATAATTAACAGGCCT+CGG | + | chr8_4:49254064-49254083 | Msa1330140:intron | 30.0% | |
| TCAATAATGTTCTCGAAAAC+AGG | - | chr8_4:49254095-49254114 | None:intergenic | 30.0% | |
| ATATACAAGTACTACAAACC+TGG | - | chr8_4:49254213-49254232 | None:intergenic | 30.0% | |
| TTATTAACCTCAACATGGTA+TGG | - | chr8_4:49254875-49254894 | None:intergenic | 30.0% | |
| AATCGGAACAACATTTGTAT+GGG | - | chr8_4:49255467-49255486 | None:intergenic | 30.0% | |
| AAATCGGAACAACATTTGTA+TGG | - | chr8_4:49255468-49255487 | None:intergenic | 30.0% | |
| GATCGATTGTTACTCTTAAA+CGG | + | chr8_4:49255611-49255630 | Msa1330140:intron | 30.0% | |
| GAAAACATAGCGAATTTATC+TGG | + | chr8_4:49255944-49255963 | Msa1330140:intron | 30.0% | |
| CCACTAAGAACAAAATCTAA+CGG | - | chr8_4:49255981-49256000 | None:intergenic | 30.0% | |
| ATATATTGCTACCTGATCAA+CGG | - | chr8_4:49256207-49256226 | None:intergenic | 30.0% | |
| AATATCAAGAGACTTAGCTA+GGG | - | chr8_4:49256360-49256379 | None:intergenic | 30.0% | |
| AAATATCAAGAGACTTAGCT+AGG | - | chr8_4:49256361-49256380 | None:intergenic | 30.0% | |
| !!! | CTCTTGATATTTTTAGGGAT+TGG | + | chr8_4:49256369-49256388 | Msa1330140:intron | 30.0% |
| ! | TAATTATTGACTACGATCGA+TGG | - | chr8_4:49256421-49256440 | None:intergenic | 30.0% |
| GAAGGTAGCTAATAATAACT+TGG | - | chr8_4:49256670-49256689 | None:intergenic | 30.0% | |
| ATTATTAGCTACCTTCAACT+TGG | + | chr8_4:49256674-49256693 | Msa1330140:intron | 30.0% | |
| TTATTAGCTACCTTCAACTT+GGG | + | chr8_4:49256675-49256694 | Msa1330140:intron | 30.0% | |
| GAAAACAAACACAGAAACAT+GGG | - | chr8_4:49256802-49256821 | None:intergenic | 30.0% | |
| AGAAAACAAACACAGAAACA+TGG | - | chr8_4:49256803-49256822 | None:intergenic | 30.0% | |
| CAGACAATTTCAATTGAGAA+TGG | + | chr8_4:49256918-49256937 | Msa1330140:intron | 30.0% | |
| ! | CTTCATCTCTTTTTCTCTTA+GGG | - | chr8_4:49257029-49257048 | None:intergenic | 30.0% |
| ! | TCTTCATCTCTTTTTCTCTT+AGG | - | chr8_4:49257030-49257049 | None:intergenic | 30.0% |
| ! | CCCCTTTTCAAAATAAGATA+AGG | - | chr8_4:49257155-49257174 | None:intergenic | 30.0% |
| AAGGTTATTGTTAGTGTTAG+TGG | + | chr8_4:49257191-49257210 | Msa1330140:three_prime_UTR | 30.0% | |
| !! | GTGTGGTCTTATTTAAGGAA+GGG | - | chr8_4:49253750-49253769 | None:intergenic | 35.0% |
| !! | ATGATGATTCTGAGATCCAA+GGG | - | chr8_4:49253772-49253791 | None:intergenic | 35.0% |
| !!! | TATGGTTTTGGGTAGGAAAT+GGG | - | chr8_4:49253799-49253818 | None:intergenic | 35.0% |
| !!! | TTATGGTTTTGGGTAGGAAA+TGG | - | chr8_4:49253800-49253819 | None:intergenic | 35.0% |
| !!! | TAGAGTTTATGGTTTTGGGT+AGG | - | chr8_4:49253806-49253825 | None:intergenic | 35.0% |
| CATGTGTTGTAGATTGAAAG+AGG | - | chr8_4:49253856-49253875 | None:intergenic | 35.0% | |
| CTCTTTCAATCTACAACACA+TGG | + | chr8_4:49253854-49253873 | Msa1330140:exon | 35.0% | |
| GTCTTTATTCACACTTCTGA+TGG | + | chr8_4:49253927-49253946 | Msa1330140:CDS | 35.0% | |
| !!! | CTGGTTTTTTTACAGTTGCA+CGG | + | chr8_4:49254287-49254306 | Msa1330140:intron | 35.0% |
| GAGGATGAAATGGACAAATA+CGG | + | chr8_4:49254309-49254328 | Msa1330140:CDS | 35.0% | |
| !! | ATGCATCTTTGTTTGAGTTG+CGG | - | chr8_4:49254372-49254391 | None:intergenic | 35.0% |
| CTCAAACAAAGATGCATCAA+AGG | + | chr8_4:49254375-49254394 | Msa1330140:CDS | 35.0% | |
| CAAAGTTGTTTATGCGTAAC+TGG | + | chr8_4:49254662-49254681 | Msa1330140:intron | 35.0% | |
| TTATGCGTAACTGGTATCTA+TGG | + | chr8_4:49254671-49254690 | Msa1330140:intron | 35.0% | |
| ! | GTGTTTGGAGCATATATGTA+CGG | + | chr8_4:49254829-49254848 | Msa1330140:CDS | 35.0% |
| ! | ATTTTGCAACATGCAAGAAG+AGG | + | chr8_4:49254954-49254973 | Msa1330140:CDS | 35.0% |
| ! | TTTTGCAACATGCAAGAAGA+GGG | + | chr8_4:49254955-49254974 | Msa1330140:CDS | 35.0% |
| TGCAAGAATCATCAGTTTGT+TGG | - | chr8_4:49255045-49255064 | None:intergenic | 35.0% | |
| TAAACAACTAACCTGCAAAG+AGG | - | chr8_4:49255073-49255092 | None:intergenic | 35.0% | |
| TATGCTAGCTAAGTTGCATT+AGG | - | chr8_4:49255105-49255124 | None:intergenic | 35.0% | |
| !! | TTAAAGGGTGTTAGTAGTTG+CGG | + | chr8_4:49255227-49255246 | Msa1330140:intron | 35.0% |
| AAAAATAGAGCCAATGGTGA+TGG | + | chr8_4:49255304-49255323 | Msa1330140:intron | 35.0% | |
| GTCTAAATAACCATCACCAT+TGG | - | chr8_4:49255317-49255336 | None:intergenic | 35.0% | |
| !! | TGGTGATGGTTATTTAGACA+TGG | + | chr8_4:49255318-49255337 | Msa1330140:intron | 35.0% |
| GATGGTTATTTAGACATGGT+CGG | + | chr8_4:49255322-49255341 | Msa1330140:intron | 35.0% | |
| !!! | GGCGAGTTTTTTTTCTTTCT+TGG | + | chr8_4:49255343-49255362 | Msa1330140:intron | 35.0% |
| AGTTATGTCGATGACTATGA+TGG | + | chr8_4:49255377-49255396 | Msa1330140:intron | 35.0% | |
| ! | CCGTTAGATTTTGTTCTTAG+TGG | + | chr8_4:49255978-49255997 | Msa1330140:intron | 35.0% |
| TTCTTAGTGGAATACATGTG+TGG | + | chr8_4:49255991-49256010 | Msa1330140:intron | 35.0% | |
| CACATACTTTGGTTGTTACA+CGG | - | chr8_4:49256471-49256490 | None:intergenic | 35.0% | |
| ! | TTGATCTTTTCCACTGATGT+TGG | - | chr8_4:49256509-49256528 | None:intergenic | 35.0% |
| CACTAATTGACAGACATGTT+TGG | - | chr8_4:49256723-49256742 | None:intergenic | 35.0% | |
| ACATGTCTGTCAATTAGTGA+AGG | + | chr8_4:49256724-49256743 | Msa1330140:intron | 35.0% | |
| AAAGGAAAGATGATCCCAAA+TGG | + | chr8_4:49256950-49256969 | Msa1330140:CDS | 35.0% | |
| CTTGCTAGTAGTTTCCATTT+GGG | - | chr8_4:49256967-49256986 | None:intergenic | 35.0% | |
| CTCCTTAGAATCTTATGAGA+GGG | - | chr8_4:49257306-49257325 | None:intergenic | 35.0% | |
| !! | GGTGTGGTCTTATTTAAGGA+AGG | - | chr8_4:49253751-49253770 | None:intergenic | 40.0% |
| !! | CAAGGGTGTGGTCTTATTTA+AGG | - | chr8_4:49253755-49253774 | None:intergenic | 40.0% |
| CTTAAATAAGACCACACCCT+TGG | + | chr8_4:49253753-49253772 | Msa1330140:five_prime_UTR | 40.0% | |
| !! | GATGATGATTCTGAGATCCA+AGG | - | chr8_4:49253773-49253792 | None:intergenic | 40.0% |
| CAATTGGAGACAAACTAACC+AGG | - | chr8_4:49253980-49253999 | None:intergenic | 40.0% | |
| TTAACTCGGTATCCGATTCA+AGG | + | chr8_4:49254012-49254031 | Msa1330140:intron | 40.0% | |
| !!! | GTCATTTTTCATTCACAGCG+CGG | - | chr8_4:49254267-49254286 | None:intergenic | 40.0% |
| GCTGTGAATGAAAAATGACC+TGG | + | chr8_4:49254268-49254287 | Msa1330140:intron | 40.0% | |
| CGTGCAACTGTAAAAAAACC+AGG | - | chr8_4:49254289-49254308 | None:intergenic | 40.0% | |
| !!! | GTTTTTTTACAGTTGCACGG+AGG | + | chr8_4:49254290-49254309 | Msa1330140:intron | 40.0% |
| !! | GCATCAAAGGTCTTGTTCAA+CGG | + | chr8_4:49254388-49254407 | Msa1330140:CDS | 40.0% |
| ACGGTTAACATCAGAAAACG+TGG | + | chr8_4:49254407-49254426 | Msa1330140:CDS | 40.0% | |
| GTTAACATCAGAAAACGTGG+TGG | + | chr8_4:49254410-49254429 | Msa1330140:CDS | 40.0% | |
| GTAGCTTCATACAACGGATA+CGG | - | chr8_4:49254476-49254495 | None:intergenic | 40.0% | |
| TGGTGAGTAGCTTCATACAA+CGG | - | chr8_4:49254482-49254501 | None:intergenic | 40.0% | |
| AACGCGGTTCAAAAAACTGA+AGG | + | chr8_4:49254510-49254529 | Msa1330140:CDS | 40.0% | |
| ACGCGGTTCAAAAAACTGAA+GGG | + | chr8_4:49254511-49254530 | Msa1330140:CDS | 40.0% | |
| TTCAAGCACAGGATCATGTT+TGG | - | chr8_4:49254550-49254569 | None:intergenic | 40.0% | |
| AGGATATCAAGTTCAAGCAC+AGG | - | chr8_4:49254561-49254580 | None:intergenic | 40.0% | |
| TATAGAGGAGAGAGAAATCG+AGG | + | chr8_4:49254756-49254775 | Msa1330140:intron | 40.0% | |
| TTGGAGCATATATGTACGGA+AGG | + | chr8_4:49254833-49254852 | Msa1330140:CDS | 40.0% | |
| TGGAGCATATATGTACGGAA+GGG | + | chr8_4:49254834-49254853 | Msa1330140:CDS | 40.0% | |
| TAGCTAAGTTGCATTAGGCA+TGG | - | chr8_4:49255100-49255119 | None:intergenic | 40.0% | |
| TGTCGATGAGTGATAAAACG+TGG | + | chr8_4:49255280-49255299 | Msa1330140:intron | 40.0% | |
| GTCGATGAGTGATAAAACGT+GGG | + | chr8_4:49255281-49255300 | Msa1330140:intron | 40.0% | |
| GTTAGAGAGTTATTGCCGTA+TGG | + | chr8_4:49255399-49255418 | Msa1330140:intron | 40.0% | |
| TTCTCTCGCTGAAAATAGCA+TGG | - | chr8_4:49255927-49255946 | None:intergenic | 40.0% | |
| ATAAAGTCTCACCGTTGATC+AGG | + | chr8_4:49256193-49256212 | Msa1330140:intron | 40.0% | |
| TTCAAACACGCAATTGTGTG+TGG | + | chr8_4:49256314-49256333 | Msa1330140:intron | 40.0% | |
| AACGGCATCAAAATACAAGC+TGG | - | chr8_4:49256395-49256414 | None:intergenic | 40.0% | |
| !!! | AGCTTGTATTTTGATGCCGT+TGG | + | chr8_4:49256394-49256413 | Msa1330140:intron | 40.0% |
| TTTGGTTGTTACACGGTAGT+GGG | - | chr8_4:49256464-49256483 | None:intergenic | 40.0% | |
| CGTGTAACAACCAAAGTATG+TGG | + | chr8_4:49256469-49256488 | Msa1330140:intron | 40.0% | |
| ATGGACATGACCACATACTT+TGG | - | chr8_4:49256482-49256501 | None:intergenic | 40.0% | |
| ATTGACAGACATGTTTGGCA+TGG | - | chr8_4:49256718-49256737 | None:intergenic | 40.0% | |
| TGAGAATGGAGCAAGAGAAA+AGG | + | chr8_4:49256932-49256951 | Msa1330140:CDS | 40.0% | |
| CCTTGCTAGTAGTTTCCATT+TGG | - | chr8_4:49256968-49256987 | None:intergenic | 40.0% | |
| CCAAATGGAAACTACTAGCA+AGG | + | chr8_4:49256965-49256984 | Msa1330140:CDS | 40.0% | |
| ATGGAAACTACTAGCAAGGA+AGG | + | chr8_4:49256969-49256988 | Msa1330140:CDS | 40.0% | |
| GGAAAACATAACCTTAGCTG+AGG | - | chr8_4:49256998-49257017 | None:intergenic | 40.0% | |
| ! | TTTTCTCTTAGGGAGAGACA+AGG | - | chr8_4:49257019-49257038 | None:intergenic | 40.0% |
| ! | AATCGTGGGATCAGATGTTT+TGG | + | chr8_4:49257069-49257088 | Msa1330140:CDS | 40.0% |
| GGGTTTCAATTGTGTACGTA+AGG | + | chr8_4:49257172-49257191 | Msa1330140:three_prime_UTR | 40.0% | |
| TGTTAGTGGCTCTTCAATTG+AGG | + | chr8_4:49257205-49257224 | Msa1330140:three_prime_UTR | 40.0% | |
| TCTTATGAGAGGGCAAAATG+AGG | - | chr8_4:49257296-49257315 | None:intergenic | 40.0% | |
| TGCCCTCTCATAAGATTCTA+AGG | + | chr8_4:49257301-49257320 | Msa1330140:three_prime_UTR | 40.0% | |
| CCTCCTTAGAATCTTATGAG+AGG | - | chr8_4:49257307-49257326 | None:intergenic | 40.0% | |
| ! | CCTCTCATAAGATTCTAAGG+AGG | + | chr8_4:49257304-49257323 | Msa1330140:three_prime_UTR | 40.0% |
| GAATACCCAAACCACACCAA+TGG | + | chr8_4:49253881-49253900 | Msa1330140:CDS | 45.0% | |
| ACTAACCAGGATGCTTGTGT+GGG | - | chr8_4:49253967-49253986 | None:intergenic | 45.0% | |
| AACTAACCAGGATGCTTGTG+TGG | - | chr8_4:49253968-49253987 | None:intergenic | 45.0% | |
| CTACAAACCTGGATGAGTAG+AGG | - | chr8_4:49254202-49254221 | None:intergenic | 45.0% | |
| CAAATACGGAATCCACCTGT+TGG | + | chr8_4:49254323-49254342 | Msa1330140:CDS | 45.0% | |
| ATACAACGGATACGGAGATC+CGG | - | chr8_4:49254468-49254487 | None:intergenic | 45.0% | |
| ACTCACCAATCACTTCAACG+CGG | + | chr8_4:49254494-49254513 | Msa1330140:CDS | 45.0% | |
| TTGAACCGCGTTGAAGTGAT+TGG | - | chr8_4:49254502-49254521 | None:intergenic | 45.0% | |
| CGGTTCAAAAAACTGAAGGG+TGG | + | chr8_4:49254514-49254533 | Msa1330140:CDS | 45.0% | |
| ACTTGATATCCTCCGCTTCA+TGG | + | chr8_4:49254569-49254588 | Msa1330140:CDS | 45.0% | |
| TTTCGCTTTCGTCCATGAAG+CGG | - | chr8_4:49254584-49254603 | None:intergenic | 45.0% | |
| ! | GAAATCGAGGAAGCATAGAG+AGG | + | chr8_4:49254769-49254788 | Msa1330140:CDS | 45.0% |
| GTTGTATGCGGAACTTTCTG+AGG | + | chr8_4:49254799-49254818 | Msa1330140:CDS | 45.0% | |
| AACATGGTATGGTCCAACGT+CGG | - | chr8_4:49254864-49254883 | None:intergenic | 45.0% | |
| !! | CAGGTGGAGAATTTGCTACA+CGG | - | chr8_4:49254908-49254927 | None:intergenic | 45.0% |
| AGCAAATTCTCCACCTGTCA+AGG | + | chr8_4:49254911-49254930 | Msa1330140:CDS | 45.0% | |
| GCAAATTCTCCACCTGTCAA+GGG | + | chr8_4:49254912-49254931 | Msa1330140:CDS | 45.0% | |
| AACATGCAAGAAGAGGGTGA+AGG | + | chr8_4:49254961-49254980 | Msa1330140:CDS | 45.0% | |
| ACATGCAAGAAGAGGGTGAA+GGG | + | chr8_4:49254962-49254981 | Msa1330140:CDS | 45.0% | |
| CTTGCAATGTTCCTCTTTGC+AGG | + | chr8_4:49255059-49255078 | Msa1330140:CDS | 45.0% | |
| CGTGGGAAAAATAGAGCCAA+TGG | + | chr8_4:49255298-49255317 | Msa1330140:intron | 45.0% | |
| CCCACACTATCATCACCATA+CGG | - | chr8_4:49255417-49255436 | None:intergenic | 45.0% | |
| ! | CCGTATGGTGATGATAGTGT+GGG | + | chr8_4:49255414-49255433 | Msa1330140:intron | 45.0% |
| ! | TATGGTGATGATAGTGTGGG+TGG | + | chr8_4:49255417-49255436 | Msa1330140:intron | 45.0% |
| CAGTTATATACTCTCTCGCG+AGG | + | chr8_4:49256040-49256059 | Msa1330140:intron | 45.0% | |
| CTTTGGTTGTTACACGGTAG+TGG | - | chr8_4:49256465-49256484 | None:intergenic | 45.0% | |
| !! | TTCCACTGATGTTGGTGTCA+TGG | - | chr8_4:49256501-49256520 | None:intergenic | 45.0% |
| TACCTTCAACTTGGGAAGCA+TGG | + | chr8_4:49256683-49256702 | Msa1330140:intron | 45.0% | |
| ! | AACCATGCTTCCCAAGTTGA+AGG | - | chr8_4:49256688-49256707 | None:intergenic | 45.0% |
| AGAGTGACCATAGACAATCG+TGG | + | chr8_4:49257054-49257073 | Msa1330140:CDS | 45.0% | |
| GAGTGACCATAGACAATCGT+GGG | + | chr8_4:49257055-49257074 | Msa1330140:CDS | 45.0% | |
| TCTGATCCCACGATTGTCTA+TGG | - | chr8_4:49257064-49257083 | None:intergenic | 45.0% | |
| !! | GATTCTGAGATCCAAGGGTG+TGG | - | chr8_4:49253767-49253786 | None:intergenic | 50.0% |
| TACCCAAACCACACCAATGG+AGG | + | chr8_4:49253884-49253903 | Msa1330140:CDS | 50.0% | |
| GACCTCCATTGGTGTGGTTT+GGG | - | chr8_4:49253889-49253908 | None:intergenic | 50.0% | |
| TAAGACGACCTCCATTGGTG+TGG | - | chr8_4:49253895-49253914 | None:intergenic | 50.0% | |
| CTCGAAAACAGGAGATACCG+AGG | - | chr8_4:49254084-49254103 | None:intergenic | 50.0% | |
| TGGAAGGAACGCCGTGAATT+TGG | - | chr8_4:49254154-49254173 | None:intergenic | 50.0% | |
| GTAGCCGATGAAAGCGGTTA+CGG | - | chr8_4:49254180-49254199 | None:intergenic | 50.0% | |
| GTAGAGGTAGCCGATGAAAG+CGG | - | chr8_4:49254186-49254205 | None:intergenic | 50.0% | |
| CAGTTGCACGGAGGATGAAA+TGG | + | chr8_4:49254299-49254318 | Msa1330140:intron | 50.0% | |
| ACACGTGAGATAGTGCCAAC+AGG | - | chr8_4:49254341-49254360 | None:intergenic | 50.0% | |
| ! | GCACAGGATCATGTTTGGTG+AGG | - | chr8_4:49254545-49254564 | None:intergenic | 50.0% |
| ! | AGGAAGCATAGAGAGGAGCA+AGG | + | chr8_4:49254776-49254795 | Msa1330140:CDS | 50.0% |
| ! | GGAAGCATAGAGAGGAGCAA+GGG | + | chr8_4:49254777-49254796 | Msa1330140:CDS | 50.0% |
| AGAGGAGCAAGGGTTGTATG+CGG | + | chr8_4:49254787-49254806 | Msa1330140:CDS | 50.0% | |
| !! | TTCTGAGGCGATGGAGTGTT+TGG | + | chr8_4:49254814-49254833 | Msa1330140:CDS | 50.0% |
| CGTTGGACCATACCATGTTG+AGG | + | chr8_4:49254865-49254884 | Msa1330140:CDS | 50.0% | |
| ! | GCCGTATGGTGATGATAGTG+TGG | + | chr8_4:49255413-49255432 | Msa1330140:intron | 50.0% |
| ! | ATGATAGTGTGGGTGGTGGT+CGG | + | chr8_4:49255424-49255443 | Msa1330140:intron | 50.0% |
| TGGTCACACCAACACACTCA+CGG | + | chr8_4:49255830-49255849 | Msa1330140:intron | 50.0% | |
| AATGGATGCCGTGAGTGTGT+TGG | - | chr8_4:49255841-49255860 | None:intergenic | 50.0% | |
| ! | CACACTCACGGCATCCATTT+TGG | + | chr8_4:49255842-49255861 | Msa1330140:intron | 50.0% |
| ATACTCTCTCGCGAGGTTGT+CGG | + | chr8_4:49256047-49256066 | Msa1330140:intron | 50.0% | |
| GACTACGATCGATGGACCAA+CGG | - | chr8_4:49256413-49256432 | None:intergenic | 50.0% | |
| GTCCATGACACCAACATCAG+TGG | + | chr8_4:49256496-49256515 | Msa1330140:intron | 50.0% | |
| AAGGAAGGTTGCCTCAGCTA+AGG | + | chr8_4:49256984-49257003 | Msa1330140:CDS | 50.0% | |
| CGACCTCCATTGGTGTGGTT+TGG | - | chr8_4:49253890-49253909 | None:intergenic | 55.0% | |
| TCGGGTAAGACGACCTCCAT+TGG | - | chr8_4:49253900-49253919 | None:intergenic | 55.0% | |
| TCGGAGCTGCGTTGTTTACG+CGG | - | chr8_4:49254122-49254141 | None:intergenic | 55.0% | |
| ACCGCCGTAACCGCTTTCAT+CGG | + | chr8_4:49254173-49254192 | Msa1330140:CDS | 55.0% | |
| TCGGCTACCTCTACTCATCC+AGG | + | chr8_4:49254192-49254211 | Msa1330140:CDS | 55.0% | |
| CGTGAGATAGTGCCAACAGG+TGG | - | chr8_4:49254338-49254357 | None:intergenic | 55.0% | |
| TGGATGTACTCCAACTCGCC+AGG | + | chr8_4:49254430-49254449 | Msa1330140:CDS | 55.0% | |
| !! | TGCGGAACTTTCTGAGGCGA+TGG | + | chr8_4:49254805-49254824 | Msa1330140:CDS | 55.0% |
| AAGCTGAAGCCCTTGACAGG+TGG | - | chr8_4:49254924-49254943 | None:intergenic | 55.0% | |
| CAGAAGCTGAAGCCCTTGAC+AGG | - | chr8_4:49254927-49254946 | None:intergenic | 55.0% | |
| TGCAAGAAGAGGGTGAAGGG+AGG | + | chr8_4:49254965-49254984 | Msa1330140:CDS | 55.0% | |
| ! | GCTGGAGGTGCAAACGTATG+TGG | + | chr8_4:49254990-49255009 | Msa1330140:CDS | 55.0% |
| ! | GGTGATGATAGTGTGGGTGG+TGG | + | chr8_4:49255420-49255439 | Msa1330140:intron | 55.0% |
| TCCAGCCCACACAAGCATCC+TGG | + | chr8_4:49253959-49253978 | Msa1330140:CDS | 60.0% | |
| ACCAGGATGCTTGTGTGGGC+TGG | - | chr8_4:49253963-49253982 | None:intergenic | 60.0% | |
| AAAGCGGTTACGGCGGTGGA+AGG | - | chr8_4:49254170-49254189 | None:intergenic | 60.0% | |
| GATGAAAGCGGTTACGGCGG+TGG | - | chr8_4:49254174-49254193 | None:intergenic | 60.0% | |
| GCCGATGAAAGCGGTTACGG+CGG | - | chr8_4:49254177-49254196 | None:intergenic | 60.0% | |
| CGCTTTCGTCCATGAAGCGG+AGG | - | chr8_4:49254581-49254600 | None:intergenic | 60.0% | |
| CATCGCAGAGCCTGGCGAGT+TGG | - | chr8_4:49254443-49254462 | None:intergenic | 65.0% | |
| ATCCGGTGCATCGCAGAGCC+TGG | - | chr8_4:49254451-49254470 | None:intergenic | 65.0% | |
| ! | ACGGAAGGGTGCACCGACGT+TGG | + | chr8_4:49254848-49254867 | Msa1330140:CDS | 65.0% |
| AGAGGGTGAAGGGAGGCTGC+TGG | + | chr8_4:49254972-49254991 | Msa1330140:CDS | 65.0% | |
| CGCCAGGCTCTGCGATGCAC+CGG | + | chr8_4:49254446-49254465 | Msa1330140:CDS | 70.0% | |
| GGGTGAAGGGAGGCTGCTGG+AGG | + | chr8_4:49254975-49254994 | Msa1330140:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49253729 | 49257425 | 49253729 | ID=Msa1330140;Name=Msa1330140 |
| chr8_4 | mRNA | 49253729 | 49257425 | 49253729 | ID=Msa1330140-mRNA-1;Parent=Msa1330140;Name=Msa1330140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144|1|1|1|1|1|5|279|363 |
| chr8_4 | exon | 49253729 | 49253980 | 49253729 | ID=Msa1330140-mRNA-1:exon:14210;Parent=Msa1330140-mRNA-1 |
| chr8_4 | exon | 49254080 | 49254213 | 49254080 | ID=Msa1330140-mRNA-1:exon:14211;Parent=Msa1330140-mRNA-1 |
| chr8_4 | exon | 49254302 | 49254605 | 49254302 | ID=Msa1330140-mRNA-1:exon:14212;Parent=Msa1330140-mRNA-1 |
| chr8_4 | exon | 49254761 | 49255080 | 49254761 | ID=Msa1330140-mRNA-1:exon:14213;Parent=Msa1330140-mRNA-1 |
| chr8_4 | exon | 49256921 | 49257425 | 49256921 | ID=Msa1330140-mRNA-1:exon:14214;Parent=Msa1330140-mRNA-1 |
| chr8_4 | five_prime_UTR | 49253729 | 49253872 | 49253729 | ID=Msa1330140-mRNA-1:five_prime_utr;Parent=Msa1330140-mRNA-1 |
| chr8_4 | CDS | 49253873 | 49253980 | 49253873 | ID=Msa1330140-mRNA-1:cds;Parent=Msa1330140-mRNA-1 |
| chr8_4 | CDS | 49254080 | 49254213 | 49254080 | ID=Msa1330140-mRNA-1:cds;Parent=Msa1330140-mRNA-1 |
| chr8_4 | CDS | 49254302 | 49254605 | 49254302 | ID=Msa1330140-mRNA-1:cds;Parent=Msa1330140-mRNA-1 |
| chr8_4 | CDS | 49254761 | 49255080 | 49254761 | ID=Msa1330140-mRNA-1:cds;Parent=Msa1330140-mRNA-1 |
| chr8_4 | CDS | 49256921 | 49257146 | 49256921 | ID=Msa1330140-mRNA-1:cds;Parent=Msa1330140-mRNA-1 |
| chr8_4 | three_prime_UTR | 49257147 | 49257425 | 49257147 | ID=Msa1330140-mRNA-1:three_prime_utr;Parent=Msa1330140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
