AlfalfaGEDB | Msa1369800

M. sativa cultivar zhongmu-4 / Msa1369800

KEGG: K10523
GO: GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009743 GO:0009751 GO:0009753 GO:0009755 GO:0009756 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010182 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0045935 GO:0046677 GO:0048229 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051246 GO:0051252 GO:0051338 GO:0051347 GO:0051603 GO:0051716 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071365 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2000278 GO:2000573 GO:2001141
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369800	XP_003608891.1	97.796	363	7	1	1	363	1	362	0.0	744

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369800	sp\|Q94BN0\|BT2_ARATH	61.515	330	114	6	15	332	32	360	2.00e-132	385

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369800	G7JMM8	97.796	363	7	1	1	363	1	362	0.0	744

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TFs/TRs:

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Gene ID	Type	Classification
Msa1369800	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1208560	Msa1369800	0.988916	6.236413e-176	-8.615850e-47
Msa1258870	Msa1369800	0.931953	1.759222e-94	-8.615850e-47
Msa1330140	Msa1369800	0.993877	7.016045e-203	-8.615850e-47
Msa1330150	Msa1369800	0.995394	7.810570e-216	-8.615850e-47
Msa1330200	Msa1369800	0.995593	7.640772e-218	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369800	MtrunA17_Chr4g0058071	97.796	363	7	1	1	363	1	362	0.0	744
Msa1369800	MtrunA17_Chr3g0116501	58.621	203	81	2	87	289	1	200	1.57e-86	260
Msa1369800	MtrunA17_Chr5g0401281	45.973	298	154	7	18	313	68	360	1.56e-84	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369800	AT3G48360.1	61.515	330	114	6	15	332	32	360	2.03e-133	385
Msa1369800	AT5G63160.1	62.540	315	108	5	14	319	22	335	2.64e-130	377
Msa1369800	AT3G48360.2	63.636	286	92	5	15	289	32	316	3.39e-120	351
Msa1369800	AT5G63160.2	63.732	284	94	4	14	289	22	304	3.16e-119	347
Msa1369800	AT5G63160.3	64.634	246	79	4	81	319	6	250	8.10e-104	307
Msa1369800	AT3G48360.3	62.745	255	85	4	87	332	1	254	1.59e-103	305
Msa1369800	AT5G67480.1	45.364	302	159	6	18	317	61	358	7.24e-83	257
Msa1369800	AT5G67480.3	45.364	302	159	6	18	317	61	358	7.24e-83	257
Msa1369800	AT5G67480.2	45.364	302	159	6	18	317	72	369	9.61e-83	257
Msa1369800	AT4G37610.1	42.904	303	164	8	18	317	56	352	6.86e-76	239

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Find 116 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGGTTACGGCGGTGGA+AGG	0.571422	tig0018912:+56433	None:intergenic
AAAGGAAAGATGATCCCAAA+TGG	0.490170	tig0018912:-53645	Msa1369800:CDS
AACATGCAAGAAGAGGGTGA+AGG	0.677915	tig0018912:-55639	Msa1369800:CDS
AACATGGTATGGTCCAACGT+CGG	0.721753	tig0018912:+55739	None:intergenic
AACTAACCAGGATGCTTGTG+TGG	0.507204	tig0018912:+56635	None:intergenic
AAGCTGAAGCCCTTGACAGG+TGG	0.613763	tig0018912:+55679	None:intergenic
AAGGAAGGTTGCCTCAGCTA+AGG	0.578016	tig0018912:-53611	Msa1369800:CDS
AAGGGGTGTGGTCTTATTTA+AGG	0.194843	tig0018912:+56849	None:intergenic
AAGGTTATTGTTAGTGTTAG+TGG	0.335935	tig0018912:-53404	Msa1369800:three_prime_UTR
AATCGTGGGATCAGATGTTT+TGG	0.358065	tig0018912:-53526	Msa1369800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTAAGGAAGGGAAGATAT+TGG	+	tig0018912:53203-53222	None:intergenic	30.0%
AGGAGAATTATTGTGATGTT+TGG	+	tig0018912:53300-53319	None:intergenic	30.0%
ATAATCGTTAGTCCTTGAAT+CGG	+	tig0018912:53491-53510	None:intergenic	30.0%
AATCAATAATTAACAGGCCT+CGG	-	tig0018912:53528-53547	Msa1369800:CDS	30.0%
TCAATAATGTTCTCGAAAAC+AGG	+	tig0018912:53559-53578	None:intergenic	30.0%
ATATACAAGTACTACAAACC+TGG	+	tig0018912:53677-53696	None:intergenic	30.0%
TTATTAACCTCAACATGGTA+TGG	+	tig0018912:54339-54358	None:intergenic	30.0%
AATCGGAACAACATTTGTAT+GGG	+	tig0018912:54931-54950	None:intergenic	30.0%
AAATCGGAACAACATTTGTA+TGG	+	tig0018912:54932-54951	None:intergenic	30.0%
GATCGATTGTTACTCTTAAA+CGG	-	tig0018912:55074-55093	Msa1369800:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018912	gene	53192	56894	53192	ID=Msa1369800;Name=Msa1369800
tig0018912	mRNA	53192	56894	53192	ID=Msa1369800-mRNA-1;Parent=Msa1369800;Name=Msa1369800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=145\|1\|1\|1\|1\|1\|5\|279\|363
tig0018912	exon	53192	53696	53192	ID=Msa1369800-mRNA-1:exon:1350;Parent=Msa1369800-mRNA-1
tig0018912	exon	55542	55861	55542	ID=Msa1369800-mRNA-1:exon:1349;Parent=Msa1369800-mRNA-1
tig0018912	exon	56017	56320	56017	ID=Msa1369800-mRNA-1:exon:1348;Parent=Msa1369800-mRNA-1
tig0018912	exon	56409	56542	56409	ID=Msa1369800-mRNA-1:exon:1347;Parent=Msa1369800-mRNA-1
tig0018912	exon	56642	56894	56642	ID=Msa1369800-mRNA-1:exon:1346;Parent=Msa1369800-mRNA-1
tig0018912	five_prime_UTR	56750	56894	56750	ID=Msa1369800-mRNA-1:five_prime_utr;Parent=Msa1369800-mRNA-1
tig0018912	CDS	56642	56749	56642	ID=Msa1369800-mRNA-1:cds;Parent=Msa1369800-mRNA-1
tig0018912	CDS	56409	56542	56409	ID=Msa1369800-mRNA-1:cds;Parent=Msa1369800-mRNA-1
tig0018912	CDS	56017	56320	56017	ID=Msa1369800-mRNA-1:cds;Parent=Msa1369800-mRNA-1
tig0018912	CDS	55542	55861	55542	ID=Msa1369800-mRNA-1:cds;Parent=Msa1369800-mRNA-1
tig0018912	CDS	53471	53696	53471	ID=Msa1369800-mRNA-1:cds;Parent=Msa1369800-mRNA-1
tig0018912	three_prime_UTR	53192	53470	53192	ID=Msa1369800-mRNA-1:three_prime_utr;Parent=Msa1369800-mRNA-1

Gene Sequence

>Msa1369800

ATGGAAATGAATACCCAAACCACACCAATGGAGGTCGTCTTACCCGAATATGATGTCTTTATTCACACTTCTGATGGCACACGCATTCCAGCCCACACAAGCATCCTGGCCTCGGTATCTCCTGTTTTCGAGAACATTATTGATCAACCGCGTAAACAACGCAGCTCCGAAAGAATAATCCAAATTCACGGCGTTCCTTCCACCGCCGTAACCGCTTTCATCGGCTACCTCTACTCATCCAGTTGCACGGAGGATGAAATGGACAAATACGGAATCCACCTGTTGGCACTATCTCACGTGTACAATGTGCCGCAACTCAAACAAAGATGCATCAAAGGTCTTGTTCAACGGTTAACATCAGAAAACGTGGTGGATGTACTCCAACTCGCCAGGCTCTGCGATGCACCGGATCTCCGTATCCGTTGTATGAAGCTACTCACCAATCACTTCAACGCGGTTCAAAAAACTGAAGGGTGGAAGTTCCTCACCAAACATGATCCTGTGCTTGAACTTGATATCCTCCGCTTCATGGACGAAAGCGAAACAAGGAGAGAGAAATCGAGGAAGCATAGAGAGGAGCAAGGGTTGTATGCGGAACTTTCTGAGGCGATGGAGTGTTTGGAGCATATATGTACGGAAGGGTGCACCGACGTTGGACCATACCATGTTGAGGTTAATAAAGAAAAGAAACCGTGTAGCAAATTCTCCACCTGTCAAGGGCTTCAGCTTCTGATTCGTCATTTTGCAACATGCAAGAAGAGGGTGAAGGGAGGCTGCTGGAGGTGCAAACGTATGTGGCAGCTGTTTAGATTGCATTCGTATGTTTGCCAACAAACTGATGATTCTTGCAATGTTCCTCTTTGCAGACAATTTCAATTGAGAATGGAGCAAGAGAAAAGGAAAGATGATCCCAAATGGAAACTACTAGCAAGGAAGGTTGCCTCAGCTAAGGTTATGTTTTCCTTGTCTCTCCCTAAGAGAAAAAGAGATGAAGAAATGAGAGTGACCATAGACAATCGTGGGATCAGATGTTTTGGTTACAATGAATATTGTAACAATAATGTCTCGGACAATCGATGTGTTTCATGTTGA

Protein sequence

>Msa1369800

MEMNTQTTPMEVVLPEYDVFIHTSDGTRIPAHTSILASVSPVFENIIDQPRKQRSSERIIQIHGVPSTAVTAFIGYLYSSSCTEDEMDKYGIHLLALSHVYNVPQLKQRCIKGLVQRLTSENVVDVLQLARLCDAPDLRIRCMKLLTNHFNAVQKTEGWKFLTKHDPVLELDILRFMDESETRREKSRKHREEQGLYAELSEAMECLEHICTEGCTDVGPYHVEVNKEKKPCSKFSTCQGLQLLIRHFATCKKRVKGGCWRCKRMWQLFRLHSYVCQQTDDSCNVPLCRQFQLRMEQEKRKDDPKWKLLARKVASAKVMFSLSLPKRKRDEEMRVTIDNRGIRCFGYNEYCNNNVSDNRCVSC*