Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330200 | XP_003608891.1 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330200 | sp|Q94BN0|BT2_ARATH | 61.515 | 330 | 114 | 6 | 15 | 332 | 32 | 360 | 2.00e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330200 | G7JMM8 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1330200 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1258870 | Msa1330200 | 0.915455 | 5.767389e-85 | -8.615850e-47 |
| Msa1330140 | Msa1330200 | 0.989277 | 1.955397e-177 | -8.615850e-47 |
| Msa1330150 | Msa1330200 | 0.991618 | 1.289351e-188 | -8.615850e-47 |
| Msa1330200 | Msa1369800 | 0.995593 | 7.640772e-218 | -8.615850e-47 |
| Msa1208560 | Msa1330200 | 0.989009 | 2.582209e-176 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330200 | MtrunA17_Chr4g0058071 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| Msa1330200 | MtrunA17_Chr3g0116501 | 58.621 | 203 | 81 | 2 | 87 | 289 | 1 | 200 | 1.57e-86 | 260 |
| Msa1330200 | MtrunA17_Chr5g0401281 | 45.973 | 298 | 154 | 7 | 18 | 313 | 68 | 360 | 1.56e-84 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330200 | AT3G48360.1 | 61.515 | 330 | 114 | 6 | 15 | 332 | 32 | 360 | 2.03e-133 | 385 |
| Msa1330200 | AT5G63160.1 | 62.540 | 315 | 108 | 5 | 14 | 319 | 22 | 335 | 2.64e-130 | 377 |
| Msa1330200 | AT3G48360.2 | 63.636 | 286 | 92 | 5 | 15 | 289 | 32 | 316 | 3.39e-120 | 351 |
| Msa1330200 | AT5G63160.2 | 63.732 | 284 | 94 | 4 | 14 | 289 | 22 | 304 | 3.16e-119 | 347 |
| Msa1330200 | AT5G63160.3 | 64.634 | 246 | 79 | 4 | 81 | 319 | 6 | 250 | 8.10e-104 | 307 |
| Msa1330200 | AT3G48360.3 | 62.745 | 255 | 85 | 4 | 87 | 332 | 1 | 254 | 1.59e-103 | 305 |
| Msa1330200 | AT5G67480.1 | 45.364 | 302 | 159 | 6 | 18 | 317 | 61 | 358 | 7.24e-83 | 257 |
| Msa1330200 | AT5G67480.3 | 45.364 | 302 | 159 | 6 | 18 | 317 | 61 | 358 | 7.24e-83 | 257 |
| Msa1330200 | AT5G67480.2 | 45.364 | 302 | 159 | 6 | 18 | 317 | 72 | 369 | 9.61e-83 | 257 |
| Msa1330200 | AT4G37610.1 | 42.904 | 303 | 164 | 8 | 18 | 317 | 56 | 352 | 6.86e-76 | 239 |
| Msa1330200 | AT1G05690.1 | 41.528 | 301 | 170 | 5 | 18 | 317 | 55 | 350 | 1.82e-74 | 235 |
| Msa1330200 | AT1G55760.1 | 33.835 | 133 | 79 | 4 | 18 | 147 | 165 | 291 | 6.35e-13 | 69.3 |
| Msa1330200 | AT3G56230.1 | 24.845 | 161 | 120 | 1 | 25 | 184 | 120 | 280 | 2.11e-12 | 67.4 |
Find 116 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGGTGTGGTCTTATTTA+AGG | 0.194843 | 8_4:+49345576 | None:intergenic |
| TGGAAGGAACGCCGTGAATT+TGG | 0.203367 | 8_4:+49345177 | None:intergenic |
| CTTGCAATGTTCCTCTTTGC+AGG | 0.245278 | 8_4:-49344263 | Msa1330200:intron |
| TGCCCTCTCATAAGATTCTA+AGG | 0.266164 | 8_4:-49342202 | Msa1330200:three_prime_UTR |
| CCTTGCTAGTAGTTTCCATT+TGG | 0.271352 | 8_4:+49342538 | None:intergenic |
| GTGAATTTGGATTATTCTTT+CGG | 0.293435 | 8_4:+49345190 | None:intergenic |
| GTGAATAAAGACATCATATT+CGG | 0.296060 | 8_4:+49345411 | None:intergenic |
| TTTGCTTGAAATGTAAATTT+TGG | 0.310791 | 8_4:-49342258 | Msa1330200:three_prime_UTR |
| TTATAAATTTAGTGATTATT+CGG | 0.311689 | 8_4:-49342104 | Msa1330200:three_prime_UTR |
| TTCTGAGGCGATGGAGTGTT+TGG | 0.329039 | 8_4:-49344508 | Msa1330200:CDS |
| ACTTGATATCCTCCGCTTCA+TGG | 0.330110 | 8_4:-49344759 | Msa1330200:CDS |
| GACCTCCATTGGTGTGGTTT+GGG | 0.335478 | 8_4:+49345441 | None:intergenic |
| AAGGTTATTGTTAGTGTTAG+TGG | 0.335935 | 8_4:-49342312 | Msa1330200:three_prime_UTR |
| CTTGCTAGTAGTTTCCATTT+GGG | 0.348881 | 8_4:+49342539 | None:intergenic |
| AATCGTGGGATCAGATGTTT+TGG | 0.358065 | 8_4:-49342434 | Msa1330200:CDS |
| ATTTAAGGAAGGGAAGATAT+TGG | 0.363883 | 8_4:+49345591 | None:intergenic |
| CGACCTCCATTGGTGTGGTT+TGG | 0.364602 | 8_4:+49345440 | None:intergenic |
| TGCAAGAATCATCAGTTTGT+TGG | 0.365276 | 8_4:+49344280 | None:intergenic |
| TGGGTAGGAAATGGGAATGA+TGG | 0.395593 | 8_4:+49345538 | None:intergenic |
| TCTGATCCCACGATTGTCTA+TGG | 0.399851 | 8_4:+49342442 | None:intergenic |
| TCAATAATGTTCTCGAAAAC+AGG | 0.405232 | 8_4:+49345236 | None:intergenic |
| CAGTTGCACGGAGGATGAAA+TGG | 0.408781 | 8_4:-49345029 | Msa1330200:CDS |
| AGAGGGTGAAGGGAGGCTGC+TGG | 0.412837 | 8_4:-49344350 | Msa1330200:CDS |
| ACCAGGATGCTTGTGTGGGC+TGG | 0.439380 | 8_4:+49345367 | None:intergenic |
| TTCAAGCACAGGATCATGTT+TGG | 0.441776 | 8_4:+49344781 | None:intergenic |
| CGCCAGGCTCTGCGATGCAC+CGG | 0.448288 | 8_4:-49344882 | Msa1330200:CDS |
| CAGACAATTTCAATTGAGAA+TGG | 0.449145 | 8_4:-49342585 | Msa1330200:CDS |
| TGAATAAAGACATCATATTC+GGG | 0.450560 | 8_4:+49345412 | None:intergenic |
| TTATTAACCTCAACATGGTA+TGG | 0.459852 | 8_4:+49344450 | None:intergenic |
| TTGAACCGCGTTGAAGTGAT+TGG | 0.469408 | 8_4:+49344829 | None:intergenic |
| TGAGAATGGAGCAAGAGAAA+AGG | 0.470643 | 8_4:-49342571 | Msa1330200:CDS |
| CCATGTGTGTAGATTGAAAG+AGG | 0.472787 | 8_4:+49345473 | None:intergenic |
| GATGAAAGCGGTTACGGCGG+TGG | 0.476910 | 8_4:+49345157 | None:intergenic |
| GTAGCCGATGAAAGCGGTTA+CGG | 0.477754 | 8_4:+49345151 | None:intergenic |
| GTCTTTATTCACACTTCTGA+TGG | 0.479577 | 8_4:-49345400 | Msa1330200:CDS |
| AGCAAATTCTCCACCTGTCA+AGG | 0.481574 | 8_4:-49344411 | Msa1330200:CDS |
| TGTTAGTGGCTCTTCAATTG+AGG | 0.489370 | 8_4:-49342298 | Msa1330200:three_prime_UTR |
| AAAGGAAAGATGATCCCAAA+TGG | 0.490170 | 8_4:-49342553 | Msa1330200:CDS |
| TTAAATAAGACCACACCCCT+TGG | 0.498034 | 8_4:-49345574 | Msa1330200:five_prime_UTR |
| CAGAAGCTGAAGCCCTTGAC+AGG | 0.502805 | 8_4:+49344398 | None:intergenic |
| AACTAACCAGGATGCTTGTG+TGG | 0.507204 | 8_4:+49345362 | None:intergenic |
| CATCGCAGAGCCTGGCGAGT+TGG | 0.510849 | 8_4:+49344888 | None:intergenic |
| GGGTTTCAATTGTGTACGTA+AGG | 0.511616 | 8_4:-49342331 | Msa1330200:three_prime_UTR |
| TGCGGAACTTTCTGAGGCGA+TGG | 0.528118 | 8_4:-49344517 | Msa1330200:CDS |
| TCGGCTACCTCTACTCATCC+AGG | 0.528548 | 8_4:-49345136 | Msa1330200:intron |
| TATAGAGGAGAGAGAAATCG+AGG | 0.529791 | 8_4:-49344566 | Msa1330200:intron |
| CCTCTTTCAATCTACACACA+TGG | 0.533451 | 8_4:-49345473 | Msa1330200:exon |
| GAAAGAATAATCCAAATTCA+CGG | 0.535992 | 8_4:-49345188 | Msa1330200:CDS |
| TCCAGCCCACACAAGCATCC+TGG | 0.542058 | 8_4:-49345368 | Msa1330200:intron |
| CTCAAACAAAGATGCATCAA+AGG | 0.544591 | 8_4:-49344953 | Msa1330200:CDS |
| GGTGTGGTCTTATTTAAGGA+AGG | 0.546701 | 8_4:+49345580 | None:intergenic |
| TCGGGTAAGACGACCTCCAT+TGG | 0.548298 | 8_4:+49345430 | None:intergenic |
| GTGTTTGGAGCATATATGTA+CGG | 0.548333 | 8_4:-49344493 | Msa1330200:CDS |
| GAGGATGAAATGGACAAATA+CGG | 0.550313 | 8_4:-49345019 | Msa1330200:CDS |
| ACCGCCGTAACCGCTTTCAT+CGG | 0.550954 | 8_4:-49345155 | Msa1330200:CDS |
| ACACGTGAGATAGTGCCAAC+AGG | 0.553618 | 8_4:+49344990 | None:intergenic |
| ACATGCAAGAAGAGGGTGAA+GGG | 0.559984 | 8_4:-49344360 | Msa1330200:CDS |
| ATGGAAACTACTAGCAAGGA+AGG | 0.562140 | 8_4:-49342534 | Msa1330200:CDS |
| TGGATGTACTCCAACTCGCC+AGG | 0.562979 | 8_4:-49344898 | Msa1330200:CDS |
| CGCTTTCGTCCATGAAGCGG+AGG | 0.563948 | 8_4:+49344750 | None:intergenic |
| ATGCATCTTTGTTTGAGTTG+CGG | 0.567744 | 8_4:+49344959 | None:intergenic |
| GGGTGAAGGGAGGCTGCTGG+AGG | 0.568462 | 8_4:-49344347 | Msa1330200:CDS |
| TTTCGCTTTCGTCCATGAAG+CGG | 0.570395 | 8_4:+49344747 | None:intergenic |
| AAAGCGGTTACGGCGGTGGA+AGG | 0.571422 | 8_4:+49345161 | None:intergenic |
| GCATCAAAGGTCTTGTTCAA+CGG | 0.574251 | 8_4:-49344940 | Msa1330200:CDS |
| CAAATACGGAATCCACCTGT+TGG | 0.576636 | 8_4:-49345005 | Msa1330200:CDS |
| AAGGAAGGTTGCCTCAGCTA+AGG | 0.578016 | 8_4:-49342519 | Msa1330200:CDS |
| ATGGATGATTCTGAGATCCA+AGG | 0.583285 | 8_4:+49345557 | None:intergenic |
| CCAAATGGAAACTACTAGCA+AGG | 0.585999 | 8_4:-49342538 | Msa1330200:CDS |
| CTCCTTAGAATCTTATGAGA+GGG | 0.589078 | 8_4:+49342200 | None:intergenic |
| GTGTGGTCTTATTTAAGGAA+GGG | 0.591375 | 8_4:+49345581 | None:intergenic |
| TTGGAGCATATATGTACGGA+AGG | 0.591498 | 8_4:-49344489 | Msa1330200:CDS |
| AGGATATCAAGTTCAAGCAC+AGG | 0.591612 | 8_4:+49344770 | None:intergenic |
| GGAAGCATAGAGAGGAGCAA+GGG | 0.591806 | 8_4:-49344545 | Msa1330200:CDS |
| ATACAACGGATACGGAGATC+CGG | 0.598941 | 8_4:+49344863 | None:intergenic |
| GCAAATTCTCCACCTGTCAA+GGG | 0.602836 | 8_4:-49344410 | Msa1330200:CDS |
| ATTCTGAGATCCAAGGGGTG+TGG | 0.604175 | 8_4:+49345564 | None:intergenic |
| GTTGTATGCGGAACTTTCTG+AGG | 0.605270 | 8_4:-49344523 | Msa1330200:CDS |
| GTAGCTTCATACAACGGATA+CGG | 0.605346 | 8_4:+49344855 | None:intergenic |
| GAATACCCAAACCACACCAA+TGG | 0.607266 | 8_4:-49345446 | Msa1330200:CDS |
| TGGATGATTCTGAGATCCAA+GGG | 0.608581 | 8_4:+49345558 | None:intergenic |
| TCGGAGCTGCGTTGTTTACG+CGG | 0.613669 | 8_4:+49345209 | None:intergenic |
| AAGCTGAAGCCCTTGACAGG+TGG | 0.613763 | 8_4:+49344401 | None:intergenic |
| AGGAAGCATAGAGAGGAGCA+AGG | 0.616562 | 8_4:-49344546 | Msa1330200:CDS |
| TAAACAACTAACCTGCAAAG+AGG | 0.620623 | 8_4:+49344252 | None:intergenic |
| CCTCCTTAGAATCTTATGAG+AGG | 0.623054 | 8_4:+49342199 | None:intergenic |
| CAGGTGGAGAATTTGCTACA+CGG | 0.624063 | 8_4:+49344417 | None:intergenic |
| CGTTGGACCATACCATGTTG+AGG | 0.625619 | 8_4:-49344457 | Msa1330200:CDS |
| TACCCAAACCACACCAATGG+AGG | 0.626720 | 8_4:-49345443 | Msa1330200:CDS |
| TAAGACGACCTCCATTGGTG+TGG | 0.627752 | 8_4:+49345435 | None:intergenic |
| TCTTATGAGAGGGCAAAATG+AGG | 0.633014 | 8_4:+49342210 | None:intergenic |
| CTACAAACCTGGATGAGTAG+AGG | 0.636623 | 8_4:+49345129 | None:intergenic |
| ATATTGTAACAATAATGTCT+CGG | 0.638704 | 8_4:-49342402 | Msa1330200:CDS |
| GCTGGAGGTGCAAACGTATG+TGG | 0.643612 | 8_4:-49344332 | Msa1330200:CDS |
| TTTCTTTATTAACCTCAACA+TGG | 0.646312 | 8_4:+49344445 | None:intergenic |
| GAAATCGAGGAAGCATAGAG+AGG | 0.652687 | 8_4:-49344553 | Msa1330200:CDS |
| GCACAGGATCATGTTTGGTG+AGG | 0.659496 | 8_4:+49344786 | None:intergenic |
| GAGTGACCATAGACAATCGT+GGG | 0.660262 | 8_4:-49342448 | Msa1330200:CDS |
| GCCGATGAAAGCGGTTACGG+CGG | 0.661788 | 8_4:+49345154 | None:intergenic |
| TGCAAGAAGAGGGTGAAGGG+AGG | 0.663791 | 8_4:-49344357 | Msa1330200:CDS |
| CGTGAGATAGTGCCAACAGG+TGG | 0.667055 | 8_4:+49344993 | None:intergenic |
| GGAAAACATAACCTTAGCTG+AGG | 0.673989 | 8_4:+49342508 | None:intergenic |
| GTAGAGGTAGCCGATGAAAG+CGG | 0.674697 | 8_4:+49345145 | None:intergenic |
| AACATGCAAGAAGAGGGTGA+AGG | 0.677915 | 8_4:-49344361 | Msa1330200:CDS |
| TGGAGCATATATGTACGGAA+GGG | 0.681205 | 8_4:-49344488 | Msa1330200:CDS |
| CCTCTCATAAGATTCTAAGG+AGG | 0.681421 | 8_4:-49342199 | Msa1330200:three_prime_UTR |
| AGAGGAGCAAGGGTTGTATG+CGG | 0.686478 | 8_4:-49344535 | Msa1330200:CDS |
| TGGTGAGTAGCTTCATACAA+CGG | 0.689964 | 8_4:+49344849 | None:intergenic |
| ACTAACCAGGATGCTTGTGT+GGG | 0.692654 | 8_4:+49345363 | None:intergenic |
| CTCGAAAACAGGAGATACCG+AGG | 0.700797 | 8_4:+49345247 | None:intergenic |
| AGAGTGACCATAGACAATCG+TGG | 0.708473 | 8_4:-49342449 | Msa1330200:CDS |
| ACGGTTAACATCAGAAAACG+TGG | 0.721632 | 8_4:-49344921 | Msa1330200:CDS |
| AACATGGTATGGTCCAACGT+CGG | 0.721753 | 8_4:+49344461 | None:intergenic |
| GTTAACATCAGAAAACGTGG+TGG | 0.747454 | 8_4:-49344918 | Msa1330200:CDS |
| GGATGATTCTGAGATCCAAG+GGG | 0.809972 | 8_4:+49345559 | None:intergenic |
| ACTCACCAATCACTTCAACG+CGG | 0.835800 | 8_4:-49344834 | Msa1330200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATATACAATAAATTAA+CGG | + | chr8_4:49344460-49344479 | None:intergenic | 10.0% |
| !! | TATATTGTATATTTGTATAT+GGG | - | chr8_4:49344471-49344490 | Msa1330200:CDS | 10.0% |
| !!! | AGATATTTATTAATTTTGAT+GGG | + | chr8_4:49344950-49344969 | None:intergenic | 10.0% |
| !!! | TAGATATTTATTAATTTTGA+TGG | + | chr8_4:49344951-49344970 | None:intergenic | 10.0% |
| !!! | AAATAATTAAGCTATTTTTT+TGG | - | chr8_4:49345087-49345106 | Msa1330200:intron | 10.0% |
| !! | TTATAAATTTAGTGATTATT+CGG | - | chr8_4:49345598-49345617 | Msa1330200:five_prime_UTR | 10.0% |
| !! | ATAATCATGGAATTAATTAA+AGG | - | chr8_4:49343591-49343610 | Msa1330200:intron | 15.0% |
| !! | TAATCATGGAATTAATTAAA+GGG | - | chr8_4:49343592-49343611 | Msa1330200:intron | 15.0% |
| !!! | ACTTATTTTATATTTGAGAT+TGG | - | chr8_4:49343951-49343970 | Msa1330200:intron | 15.0% |
| !!! | AATTTCATTTTTGTTTAGAT+GGG | - | chr8_4:49344182-49344201 | Msa1330200:intron | 15.0% |
| !! | GTATATTGTATATTTGTATA+TGG | - | chr8_4:49344470-49344489 | Msa1330200:CDS | 15.0% |
| !! | ATATTGTATATTTGTATATG+GGG | - | chr8_4:49344472-49344491 | Msa1330200:CDS | 15.0% |
| !!! | TTTTTAGAGTTTATGGTTTT+GGG | + | chr8_4:49342186-49342205 | None:intergenic | 20.0% |
| !!! | TTTTTTAGAGTTTATGGTTT+TGG | + | chr8_4:49342187-49342206 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTTAGAGTTTA+TGG | + | chr8_4:49342193-49342212 | None:intergenic | 20.0% |
| !! | GTTAAAAAAATACGAACAAT+TGG | + | chr8_4:49342371-49342390 | None:intergenic | 20.0% |
| !!! | TTGTTCGTATTTTTTTAACT+CGG | - | chr8_4:49342372-49342391 | Msa1330200:exon | 20.0% |
| !! | GTTGTAAATCAATAATTAAC+AGG | - | chr8_4:49342432-49342451 | Msa1330200:CDS | 20.0% |
| !! | TGATTATTATTGTGTTATAG+AGG | - | chr8_4:49343121-49343140 | Msa1330200:intron | 20.0% |
| !!! | TATTTTATATTTGAGATTGG+AGG | - | chr8_4:49343954-49343973 | Msa1330200:intron | 20.0% |
| !!! | CAATTTCATTTTTGTTTAGA+TGG | - | chr8_4:49344181-49344200 | Msa1330200:intron | 20.0% |
| !!! | TAAGTCTCTTGATATTTTTA+GGG | - | chr8_4:49344565-49344584 | Msa1330200:intron | 20.0% |
| !!! | CTAATTTTATAGAGATGAAT+CGG | - | chr8_4:49344797-49344816 | Msa1330200:CDS | 20.0% |
| !! | ATATTGTAACAATAATGTCT+CGG | - | chr8_4:49345300-49345319 | Msa1330200:intron | 20.0% |
| !!! | TTTGCTTGAAATGTAAATTT+TGG | - | chr8_4:49345444-49345463 | Msa1330200:CDS | 20.0% |
| ! | TGAATAAAGACATCATATTC+GGG | + | chr8_4:49342293-49342312 | None:intergenic | 25.0% |
| ! | GTGAATAAAGACATCATATT+CGG | + | chr8_4:49342294-49342313 | None:intergenic | 25.0% |
| ! | GTGAATTTGGATTATTCTTT+CGG | + | chr8_4:49342515-49342534 | None:intergenic | 25.0% |
| ! | GAAAGAATAATCCAAATTCA+CGG | - | chr8_4:49342514-49342533 | Msa1330200:CDS | 25.0% |
| ! | TTTCTTTATTAACCTCAACA+TGG | + | chr8_4:49343260-49343279 | None:intergenic | 25.0% |
| !! | AGCTCTAACAAAAGATTATA+AGG | + | chr8_4:49343534-49343553 | None:intergenic | 25.0% |
| ! | AGAATAGTACATCATAATCA+TGG | - | chr8_4:49343578-49343597 | Msa1330200:intron | 25.0% |
| !!! | GTTGTTGCGATTTTTTATTT+CGG | - | chr8_4:49343855-49343874 | Msa1330200:intron | 25.0% |
| ! | TTATTTCGGTCATAAATGTA+AGG | - | chr8_4:49343869-49343888 | Msa1330200:intron | 25.0% |
| ! | AAAGCTGATGTATTTGATTA+AGG | - | chr8_4:49343906-49343925 | Msa1330200:intron | 25.0% |
| !!! | TTTTGTTTAGATGGGTAAAA+TGG | - | chr8_4:49344190-49344209 | Msa1330200:intron | 25.0% |
| ! | TGAACATTGCAATATTTGAT+TGG | + | chr8_4:49344499-49344518 | None:intergenic | 25.0% |
| !! | CTAAGTCTCTTGATATTTTT+AGG | - | chr8_4:49344564-49344583 | Msa1330200:CDS | 25.0% |
| ! | AAGGTAGCTAATAATAACTT+GGG | + | chr8_4:49344868-49344887 | None:intergenic | 25.0% |
| !!! | TGCCTTATCTTATTTTGAAA+AGG | - | chr8_4:49345349-49345368 | Msa1330200:intron | 25.0% |
| !!! | GCCTTATCTTATTTTGAAAA+GGG | - | chr8_4:49345350-49345369 | Msa1330200:intron | 25.0% |
| !!! | CCTTATCTTATTTTGAAAAG+GGG | - | chr8_4:49345351-49345370 | Msa1330200:intron | 25.0% |
| ATTTAAGGAAGGGAAGATAT+TGG | + | chr8_4:49342114-49342133 | None:intergenic | 30.0% | |
| ATAATCGTTAGTCCTTGAAT+CGG | + | chr8_4:49342401-49342420 | None:intergenic | 30.0% | |
| AATCAATAATTAACAGGCCT+CGG | - | chr8_4:49342438-49342457 | Msa1330200:CDS | 30.0% | |
| TCAATAATGTTCTCGAAAAC+AGG | + | chr8_4:49342469-49342488 | None:intergenic | 30.0% | |
| ATATACAAGTACTACAAACC+TGG | + | chr8_4:49342587-49342606 | None:intergenic | 30.0% | |
| TTATTAACCTCAACATGGTA+TGG | + | chr8_4:49343255-49343274 | None:intergenic | 30.0% | |
| TTAGAGAGTTATTGCCTTTA+TGG | - | chr8_4:49343779-49343798 | Msa1330200:intron | 30.0% | |
| AATCGCAACAACATTTGTAT+GGG | + | chr8_4:49343847-49343866 | None:intergenic | 30.0% | |
| AAATCGCAACAACATTTGTA+TGG | + | chr8_4:49343848-49343867 | None:intergenic | 30.0% | |
| GATCGATTGTTACTCTTAAA+CGG | - | chr8_4:49343990-49344009 | Msa1330200:intron | 30.0% | |
| !!! | CTATTTTTGGACCAAAACAA+TGG | + | chr8_4:49344240-49344259 | None:intergenic | 30.0% |
| ! | TTGCTAGCAAGAACTATTTT+TGG | + | chr8_4:49344253-49344272 | None:intergenic | 30.0% |
| ATATATTGCTACCTGATCAA+CGG | + | chr8_4:49344408-49344427 | None:intergenic | 30.0% | |
| AATATCAAGAGACTTAGCTA+GGG | + | chr8_4:49344561-49344580 | None:intergenic | 30.0% | |
| AAATATCAAGAGACTTAGCT+AGG | + | chr8_4:49344562-49344581 | None:intergenic | 30.0% | |
| !!! | CTCTTGATATTTTTAGGGAT+TGG | - | chr8_4:49344570-49344589 | Msa1330200:intron | 30.0% |
| ! | TAATTATTGACTACGATCGA+TGG | + | chr8_4:49344622-49344641 | None:intergenic | 30.0% |
| GAAGGTAGCTAATAATAACT+TGG | + | chr8_4:49344869-49344888 | None:intergenic | 30.0% | |
| ATTATTAGCTACCTTCAACT+TGG | - | chr8_4:49344873-49344892 | Msa1330200:CDS | 30.0% | |
| TTATTAGCTACCTTCAACTT+GGG | - | chr8_4:49344874-49344893 | Msa1330200:CDS | 30.0% | |
| GAAAACAAACACAGAAACAT+GGG | + | chr8_4:49345001-49345020 | None:intergenic | 30.0% | |
| AGAAAACAAACACAGAAACA+TGG | + | chr8_4:49345002-49345021 | None:intergenic | 30.0% | |
| CAGACAATTTCAATTGAGAA+TGG | - | chr8_4:49345117-49345136 | Msa1330200:intron | 30.0% | |
| ! | CTTCATCTCTTTTTCTCTTA+GGG | + | chr8_4:49345228-49345247 | None:intergenic | 30.0% |
| ! | TCTTCATCTCTTTTTCTCTT+AGG | + | chr8_4:49345229-49345248 | None:intergenic | 30.0% |
| ! | CCCCTTTTCAAAATAAGATA+AGG | + | chr8_4:49345354-49345373 | None:intergenic | 30.0% |
| AAGGTTATTGTTAGTGTTAG+TGG | - | chr8_4:49345390-49345409 | Msa1330200:CDS | 30.0% | |
| !! | GTGTGGTCTTATTTAAGGAA+GGG | + | chr8_4:49342124-49342143 | None:intergenic | 35.0% |
| !!! | TATGGTTTTGGGTAGGAAAT+GGG | + | chr8_4:49342175-49342194 | None:intergenic | 35.0% |
| !!! | TTATGGTTTTGGGTAGGAAA+TGG | + | chr8_4:49342176-49342195 | None:intergenic | 35.0% |
| !!! | TAGAGTTTATGGTTTTGGGT+AGG | + | chr8_4:49342182-49342201 | None:intergenic | 35.0% |
| GTCTTTATTCACACTTCTGA+TGG | - | chr8_4:49342302-49342321 | Msa1330200:three_prime_UTR | 35.0% | |
| GAGGATGAAATGGACAAATA+CGG | - | chr8_4:49342683-49342702 | Msa1330200:intron | 35.0% | |
| !! | ATGCATCTTTGTTTGAGTTG+CGG | + | chr8_4:49342746-49342765 | None:intergenic | 35.0% |
| CTCAAACAAAGATGCATCAA+AGG | - | chr8_4:49342749-49342768 | Msa1330200:intron | 35.0% | |
| CAAAGTTGTTTATGCGTAAC+TGG | - | chr8_4:49343036-49343055 | Msa1330200:intron | 35.0% | |
| TTATGCGTAACTGGTATCTA+TGG | - | chr8_4:49343045-49343064 | Msa1330200:intron | 35.0% | |
| ! | GTGTTTGGAGCATATATGTA+CGG | - | chr8_4:49343209-49343228 | Msa1330200:intron | 35.0% |
| ! | ATTTTGCAACATGCAAGAAG+AGG | - | chr8_4:49343334-49343353 | Msa1330200:intron | 35.0% |
| ! | TTTTGCAACATGCAAGAAGA+GGG | - | chr8_4:49343335-49343354 | Msa1330200:intron | 35.0% |
| TGCAAGAATCATCAGTTTGT+TGG | + | chr8_4:49343425-49343444 | None:intergenic | 35.0% | |
| TAAACAACTAACCTGCAAAG+AGG | + | chr8_4:49343453-49343472 | None:intergenic | 35.0% | |
| TATGCTAGCTAAGTTGCATT+AGG | + | chr8_4:49343485-49343504 | None:intergenic | 35.0% | |
| !! | TTAAAGGGTGTTAGTAGTTG+CGG | - | chr8_4:49343607-49343626 | Msa1330200:intron | 35.0% |
| AAAAATAGAGCCAATGGTGA+TGG | - | chr8_4:49343684-49343703 | Msa1330200:intron | 35.0% | |
| GTCTAAATAACCATCACCAT+TGG | + | chr8_4:49343697-49343716 | None:intergenic | 35.0% | |
| !! | TGGTGATGGTTATTTAGACA+TGG | - | chr8_4:49343698-49343717 | Msa1330200:intron | 35.0% |
| GATGGTTATTTAGACATGGT+CGG | - | chr8_4:49343702-49343721 | Msa1330200:intron | 35.0% | |
| !!! | GGCGAGTTTTTTTTCTTTCT+TGG | - | chr8_4:49343723-49343742 | Msa1330200:intron | 35.0% |
| AGTTATGTCGATGACTATGA+TGG | - | chr8_4:49343756-49343775 | Msa1330200:intron | 35.0% | |
| ! | CTTTATGGTGATGATAGTGT+GGG | - | chr8_4:49343794-49343813 | Msa1330200:intron | 35.0% |
| CACATACTTTGGTTGTTACA+CGG | + | chr8_4:49344674-49344693 | None:intergenic | 35.0% | |
| ! | TTGATCTTTTCCACTGATGT+TGG | + | chr8_4:49344712-49344731 | None:intergenic | 35.0% |
| CACTAATTGACAGACATGTT+TGG | + | chr8_4:49344922-49344941 | None:intergenic | 35.0% | |
| ACATGTCTGTCAATTAGTGA+AGG | - | chr8_4:49344923-49344942 | Msa1330200:CDS | 35.0% | |
| AAAGGAAAGATGATCCCAAA+TGG | - | chr8_4:49345149-49345168 | Msa1330200:CDS | 35.0% | |
| CTTGCTAGTAGTTTCCATTT+GGG | + | chr8_4:49345166-49345185 | None:intergenic | 35.0% | |
| CTCCTTAGAATCTTATGAGA+GGG | + | chr8_4:49345505-49345524 | None:intergenic | 35.0% | |
| !! | GGTGTGGTCTTATTTAAGGA+AGG | + | chr8_4:49342125-49342144 | None:intergenic | 40.0% |
| !! | AAGGGGTGTGGTCTTATTTA+AGG | + | chr8_4:49342129-49342148 | None:intergenic | 40.0% |
| TTAAATAAGACCACACCCCT+TGG | - | chr8_4:49342128-49342147 | Msa1330200:three_prime_UTR | 40.0% | |
| !! | TGGATGATTCTGAGATCCAA+GGG | + | chr8_4:49342147-49342166 | None:intergenic | 40.0% |
| !! | ATGGATGATTCTGAGATCCA+AGG | + | chr8_4:49342148-49342167 | None:intergenic | 40.0% |
| CCATGTGTGTAGATTGAAAG+AGG | + | chr8_4:49342232-49342251 | None:intergenic | 40.0% | |
| CCTCTTTCAATCTACACACA+TGG | - | chr8_4:49342229-49342248 | Msa1330200:three_prime_UTR | 40.0% | |
| CAATTGGAGACAAACTAACC+AGG | + | chr8_4:49342355-49342374 | None:intergenic | 40.0% | |
| TTAACTCGGTATCCGATTCA+AGG | - | chr8_4:49342386-49342405 | Msa1330200:CDS | 40.0% | |
| GCTGTGAATGAAAAATGACC+TGG | - | chr8_4:49342643-49342662 | Msa1330200:intron | 40.0% | |
| !!! | CCTGGTTTTTTACAGTTGCA+CGG | - | chr8_4:49342661-49342680 | Msa1330200:intron | 40.0% |
| !! | GCATCAAAGGTCTTGTTCAA+CGG | - | chr8_4:49342762-49342781 | Msa1330200:intron | 40.0% |
| ACGGTTAACATCAGAAAACG+TGG | - | chr8_4:49342781-49342800 | Msa1330200:intron | 40.0% | |
| GTTAACATCAGAAAACGTGG+TGG | - | chr8_4:49342784-49342803 | Msa1330200:intron | 40.0% | |
| GTAGCTTCATACAACGGATA+CGG | + | chr8_4:49342850-49342869 | None:intergenic | 40.0% | |
| TGGTGAGTAGCTTCATACAA+CGG | + | chr8_4:49342856-49342875 | None:intergenic | 40.0% | |
| AACGCGGTTCAAAAAACTGA+AGG | - | chr8_4:49342884-49342903 | Msa1330200:intron | 40.0% | |
| ACGCGGTTCAAAAAACTGAA+GGG | - | chr8_4:49342885-49342904 | Msa1330200:intron | 40.0% | |
| TTCAAGCACAGGATCATGTT+TGG | + | chr8_4:49342924-49342943 | None:intergenic | 40.0% | |
| AGGATATCAAGTTCAAGCAC+AGG | + | chr8_4:49342935-49342954 | None:intergenic | 40.0% | |
| TATAGAGGAGAGAGAAATCG+AGG | - | chr8_4:49343136-49343155 | Msa1330200:intron | 40.0% | |
| TTGGAGCATATATGTACGGA+AGG | - | chr8_4:49343213-49343232 | Msa1330200:intron | 40.0% | |
| TGGAGCATATATGTACGGAA+GGG | - | chr8_4:49343214-49343233 | Msa1330200:intron | 40.0% | |
| TAGCTAAGTTGCATTAGGCA+TGG | + | chr8_4:49343480-49343499 | None:intergenic | 40.0% | |
| TGTCGATGAGTGATAAAACG+TGG | - | chr8_4:49343660-49343679 | Msa1330200:intron | 40.0% | |
| GTCGATGAGTGATAAAACGT+GGG | - | chr8_4:49343661-49343680 | Msa1330200:intron | 40.0% | |
| CCACACTATCATCACCATAA+AGG | + | chr8_4:49343796-49343815 | None:intergenic | 40.0% | |
| ! | CCTTTATGGTGATGATAGTG+TGG | - | chr8_4:49343793-49343812 | Msa1330200:intron | 40.0% |
| TTCAAACACGCAATTGTGTG+TGG | - | chr8_4:49344515-49344534 | Msa1330200:CDS | 40.0% | |
| AACGGCATCAAAATACAAGC+TGG | + | chr8_4:49344596-49344615 | None:intergenic | 40.0% | |
| !!! | AGCTTGTATTTTGATGCCGT+TGG | - | chr8_4:49344595-49344614 | Msa1330200:intron | 40.0% |
| TTTGGTTGTTACACGGTAGT+GGG | + | chr8_4:49344667-49344686 | None:intergenic | 40.0% | |
| CGTGTAACAACCAAAGTATG+TGG | - | chr8_4:49344672-49344691 | Msa1330200:intron | 40.0% | |
| ATGGACATGACCACATACTT+TGG | + | chr8_4:49344685-49344704 | None:intergenic | 40.0% | |
| ATTGACAGACATGTTTGGCA+TGG | + | chr8_4:49344917-49344936 | None:intergenic | 40.0% | |
| TGAGAATGGAGCAAGAGAAA+AGG | - | chr8_4:49345131-49345150 | Msa1330200:intron | 40.0% | |
| CCTTGCTAGTAGTTTCCATT+TGG | + | chr8_4:49345167-49345186 | None:intergenic | 40.0% | |
| CCAAATGGAAACTACTAGCA+AGG | - | chr8_4:49345164-49345183 | Msa1330200:CDS | 40.0% | |
| ATGGAAACTACTAGCAAGGA+AGG | - | chr8_4:49345168-49345187 | Msa1330200:CDS | 40.0% | |
| GGAAAACATAACCTTAGCTG+AGG | + | chr8_4:49345197-49345216 | None:intergenic | 40.0% | |
| ! | TTTTCTCTTAGGGAGAGACA+AGG | + | chr8_4:49345218-49345237 | None:intergenic | 40.0% |
| ! | AATCGTGGGATCAGATGTTT+TGG | - | chr8_4:49345268-49345287 | Msa1330200:intron | 40.0% |
| GGGTTTCAATTGTGTACGTA+AGG | - | chr8_4:49345371-49345390 | Msa1330200:CDS | 40.0% | |
| TGTTAGTGGCTCTTCAATTG+AGG | - | chr8_4:49345404-49345423 | Msa1330200:CDS | 40.0% | |
| TCTTATGAGAGGGCAAAATG+AGG | + | chr8_4:49345495-49345514 | None:intergenic | 40.0% | |
| TGCCCTCTCATAAGATTCTA+AGG | - | chr8_4:49345500-49345519 | Msa1330200:five_prime_UTR | 40.0% | |
| CCTCCTTAGAATCTTATGAG+AGG | + | chr8_4:49345506-49345525 | None:intergenic | 40.0% | |
| ! | CCTCTCATAAGATTCTAAGG+AGG | - | chr8_4:49345503-49345522 | Msa1330200:five_prime_UTR | 40.0% |
| !! | GGATGATTCTGAGATCCAAG+GGG | + | chr8_4:49342146-49342165 | None:intergenic | 45.0% |
| TGGGTAGGAAATGGGAATGA+TGG | + | chr8_4:49342167-49342186 | None:intergenic | 45.0% | |
| GAATACCCAAACCACACCAA+TGG | - | chr8_4:49342256-49342275 | Msa1330200:three_prime_UTR | 45.0% | |
| ACTAACCAGGATGCTTGTGT+GGG | + | chr8_4:49342342-49342361 | None:intergenic | 45.0% | |
| AACTAACCAGGATGCTTGTG+TGG | + | chr8_4:49342343-49342362 | None:intergenic | 45.0% | |
| CTACAAACCTGGATGAGTAG+AGG | + | chr8_4:49342576-49342595 | None:intergenic | 45.0% | |
| ! | CATTTTTCATTCACAGCGCG+CGG | + | chr8_4:49342640-49342659 | None:intergenic | 45.0% |
| CCGTGCAACTGTAAAAAACC+AGG | + | chr8_4:49342664-49342683 | None:intergenic | 45.0% | |
| !!! | GGTTTTTTACAGTTGCACGG+AGG | - | chr8_4:49342664-49342683 | Msa1330200:intron | 45.0% |
| CAAATACGGAATCCACCTGT+TGG | - | chr8_4:49342697-49342716 | Msa1330200:intron | 45.0% | |
| ATACAACGGATACGGAGATC+CGG | + | chr8_4:49342842-49342861 | None:intergenic | 45.0% | |
| ACTCACCAATCACTTCAACG+CGG | - | chr8_4:49342868-49342887 | Msa1330200:intron | 45.0% | |
| TTGAACCGCGTTGAAGTGAT+TGG | + | chr8_4:49342876-49342895 | None:intergenic | 45.0% | |
| CGGTTCAAAAAACTGAAGGG+TGG | - | chr8_4:49342888-49342907 | Msa1330200:intron | 45.0% | |
| ACTTGATATCCTCCGCTTCA+TGG | - | chr8_4:49342943-49342962 | Msa1330200:intron | 45.0% | |
| TTTCGCTTTCGTCCATGAAG+CGG | + | chr8_4:49342958-49342977 | None:intergenic | 45.0% | |
| ! | GAAATCGAGGAAGCATAGAG+AGG | - | chr8_4:49343149-49343168 | Msa1330200:intron | 45.0% |
| GTTGTATGCGGAACTTTCTG+AGG | - | chr8_4:49343179-49343198 | Msa1330200:intron | 45.0% | |
| AACATGGTATGGTCCAACGT+CGG | + | chr8_4:49343244-49343263 | None:intergenic | 45.0% | |
| !! | CAGGTGGAGAATTTGCTACA+CGG | + | chr8_4:49343288-49343307 | None:intergenic | 45.0% |
| AGCAAATTCTCCACCTGTCA+AGG | - | chr8_4:49343291-49343310 | Msa1330200:intron | 45.0% | |
| GCAAATTCTCCACCTGTCAA+GGG | - | chr8_4:49343292-49343311 | Msa1330200:intron | 45.0% | |
| AACATGCAAGAAGAGGGTGA+AGG | - | chr8_4:49343341-49343360 | Msa1330200:intron | 45.0% | |
| ACATGCAAGAAGAGGGTGAA+GGG | - | chr8_4:49343342-49343361 | Msa1330200:intron | 45.0% | |
| CTTGCAATGTTCCTCTTTGC+AGG | - | chr8_4:49343439-49343458 | Msa1330200:intron | 45.0% | |
| CGTGGGAAAAATAGAGCCAA+TGG | - | chr8_4:49343678-49343697 | Msa1330200:intron | 45.0% | |
| ! | TATGGTGATGATAGTGTGGG+TGG | - | chr8_4:49343797-49343816 | Msa1330200:intron | 45.0% |
| ! | ACTCACGGCATCCATTGTTT+TGG | - | chr8_4:49344226-49344245 | Msa1330200:intron | 45.0% |
| AAAGTCTCTCACCGTTGATC+AGG | - | chr8_4:49344394-49344413 | Msa1330200:CDS | 45.0% | |
| CTTTGGTTGTTACACGGTAG+TGG | + | chr8_4:49344668-49344687 | None:intergenic | 45.0% | |
| !! | TTCCACTGATGTTGGTGTCA+TGG | + | chr8_4:49344704-49344723 | None:intergenic | 45.0% |
| TACCTTCAACTTGGGAAGCA+TGG | - | chr8_4:49344882-49344901 | Msa1330200:CDS | 45.0% | |
| ! | AACCATGCTTCCCAAGTTGA+AGG | + | chr8_4:49344887-49344906 | None:intergenic | 45.0% |
| AGAGTGACCATAGACAATCG+TGG | - | chr8_4:49345253-49345272 | Msa1330200:intron | 45.0% | |
| GAGTGACCATAGACAATCGT+GGG | - | chr8_4:49345254-49345273 | Msa1330200:intron | 45.0% | |
| TCTGATCCCACGATTGTCTA+TGG | + | chr8_4:49345263-49345282 | None:intergenic | 45.0% | |
| !! | ATTCTGAGATCCAAGGGGTG+TGG | + | chr8_4:49342141-49342160 | None:intergenic | 50.0% |
| TACCCAAACCACACCAATGG+AGG | - | chr8_4:49342259-49342278 | Msa1330200:three_prime_UTR | 50.0% | |
| GACCTCCATTGGTGTGGTTT+GGG | + | chr8_4:49342264-49342283 | None:intergenic | 50.0% | |
| TAAGACGACCTCCATTGGTG+TGG | + | chr8_4:49342270-49342289 | None:intergenic | 50.0% | |
| CTCGAAAACAGGAGATACCG+AGG | + | chr8_4:49342458-49342477 | None:intergenic | 50.0% | |
| TGGAAGGAACGCCGTGAATT+TGG | + | chr8_4:49342528-49342547 | None:intergenic | 50.0% | |
| GTAGCCGATGAAAGCGGTTA+CGG | + | chr8_4:49342554-49342573 | None:intergenic | 50.0% | |
| GTAGAGGTAGCCGATGAAAG+CGG | + | chr8_4:49342560-49342579 | None:intergenic | 50.0% | |
| CAGTTGCACGGAGGATGAAA+TGG | - | chr8_4:49342673-49342692 | Msa1330200:intron | 50.0% | |
| ACACGTGAGATAGTGCCAAC+AGG | + | chr8_4:49342715-49342734 | None:intergenic | 50.0% | |
| ! | GCACAGGATCATGTTTGGTG+AGG | + | chr8_4:49342919-49342938 | None:intergenic | 50.0% |
| ! | AGGAAGCATAGAGAGGAGCA+AGG | - | chr8_4:49343156-49343175 | Msa1330200:intron | 50.0% |
| ! | GGAAGCATAGAGAGGAGCAA+GGG | - | chr8_4:49343157-49343176 | Msa1330200:intron | 50.0% |
| AGAGGAGCAAGGGTTGTATG+CGG | - | chr8_4:49343167-49343186 | Msa1330200:intron | 50.0% | |
| !! | TTCTGAGGCGATGGAGTGTT+TGG | - | chr8_4:49343194-49343213 | Msa1330200:intron | 50.0% |
| CGTTGGACCATACCATGTTG+AGG | - | chr8_4:49343245-49343264 | Msa1330200:intron | 50.0% | |
| ! | ATGATAGTGTGGGTGGTGGT+CGG | - | chr8_4:49343804-49343823 | Msa1330200:intron | 50.0% |
| GGTCACACACAACACACTCA+CGG | - | chr8_4:49344211-49344230 | Msa1330200:intron | 50.0% | |
| GACTACGATCGATGGACCAA+CGG | + | chr8_4:49344614-49344633 | None:intergenic | 50.0% | |
| GTCCATGACACCAACATCAG+TGG | - | chr8_4:49344699-49344718 | Msa1330200:intron | 50.0% | |
| AAGGAAGGTTGCCTCAGCTA+AGG | - | chr8_4:49345183-49345202 | Msa1330200:CDS | 50.0% | |
| CGACCTCCATTGGTGTGGTT+TGG | + | chr8_4:49342265-49342284 | None:intergenic | 55.0% | |
| TCGGGTAAGACGACCTCCAT+TGG | + | chr8_4:49342275-49342294 | None:intergenic | 55.0% | |
| TCGGAGCTGCGTTGTTTACG+CGG | + | chr8_4:49342496-49342515 | None:intergenic | 55.0% | |
| ACCGCCGTAACCGCTTTCAT+CGG | - | chr8_4:49342547-49342566 | Msa1330200:CDS | 55.0% | |
| TCGGCTACCTCTACTCATCC+AGG | - | chr8_4:49342566-49342585 | Msa1330200:CDS | 55.0% | |
| CGTGAGATAGTGCCAACAGG+TGG | + | chr8_4:49342712-49342731 | None:intergenic | 55.0% | |
| TGGATGTACTCCAACTCGCC+AGG | - | chr8_4:49342804-49342823 | Msa1330200:intron | 55.0% | |
| !! | TGCGGAACTTTCTGAGGCGA+TGG | - | chr8_4:49343185-49343204 | Msa1330200:intron | 55.0% |
| AAGCTGAAGCCCTTGACAGG+TGG | + | chr8_4:49343304-49343323 | None:intergenic | 55.0% | |
| CAGAAGCTGAAGCCCTTGAC+AGG | + | chr8_4:49343307-49343326 | None:intergenic | 55.0% | |
| TGCAAGAAGAGGGTGAAGGG+AGG | - | chr8_4:49343345-49343364 | Msa1330200:intron | 55.0% | |
| ! | GCTGGAGGTGCAAACGTATG+TGG | - | chr8_4:49343370-49343389 | Msa1330200:intron | 55.0% |
| ! | GGTGATGATAGTGTGGGTGG+TGG | - | chr8_4:49343800-49343819 | Msa1330200:intron | 55.0% |
| TCCAGCCCACACAAGCATCC+TGG | - | chr8_4:49342334-49342353 | Msa1330200:three_prime_UTR | 60.0% | |
| ACCAGGATGCTTGTGTGGGC+TGG | + | chr8_4:49342338-49342357 | None:intergenic | 60.0% | |
| AAAGCGGTTACGGCGGTGGA+AGG | + | chr8_4:49342544-49342563 | None:intergenic | 60.0% | |
| GATGAAAGCGGTTACGGCGG+TGG | + | chr8_4:49342548-49342567 | None:intergenic | 60.0% | |
| GCCGATGAAAGCGGTTACGG+CGG | + | chr8_4:49342551-49342570 | None:intergenic | 60.0% | |
| CGCTTTCGTCCATGAAGCGG+AGG | + | chr8_4:49342955-49342974 | None:intergenic | 60.0% | |
| CATCGCAGAGCCTGGCGAGT+TGG | + | chr8_4:49342817-49342836 | None:intergenic | 65.0% | |
| ATCCGGTGCATCGCAGAGCC+TGG | + | chr8_4:49342825-49342844 | None:intergenic | 65.0% | |
| ! | ACGGAAGGGTGCACCGACGT+TGG | - | chr8_4:49343228-49343247 | Msa1330200:intron | 65.0% |
| AGAGGGTGAAGGGAGGCTGC+TGG | - | chr8_4:49343352-49343371 | Msa1330200:intron | 65.0% | |
| CGCCAGGCTCTGCGATGCAC+CGG | - | chr8_4:49342820-49342839 | Msa1330200:intron | 70.0% | |
| GGGTGAAGGGAGGCTGCTGG+AGG | - | chr8_4:49343355-49343374 | Msa1330200:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49342103 | 49345621 | 49342103 | ID=Msa1330200;Name=Msa1330200 |
| chr8_4 | mRNA | 49342103 | 49345621 | 49342103 | ID=Msa1330200-mRNA-1;Parent=Msa1330200;Name=Msa1330200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=145|1|1|1|1|1|5|276|363 |
| chr8_4 | exon | 49342103 | 49342604 | 49342103 | ID=Msa1330200-mRNA-1:exon:14259;Parent=Msa1330200-mRNA-1 |
| chr8_4 | exon | 49344264 | 49344583 | 49344264 | ID=Msa1330200-mRNA-1:exon:14258;Parent=Msa1330200-mRNA-1 |
| chr8_4 | exon | 49344745 | 49345048 | 49344745 | ID=Msa1330200-mRNA-1:exon:14257;Parent=Msa1330200-mRNA-1 |
| chr8_4 | exon | 49345137 | 49345270 | 49345137 | ID=Msa1330200-mRNA-1:exon:14256;Parent=Msa1330200-mRNA-1 |
| chr8_4 | exon | 49345369 | 49345621 | 49345369 | ID=Msa1330200-mRNA-1:exon:14255;Parent=Msa1330200-mRNA-1 |
| chr8_4 | five_prime_UTR | 49345477 | 49345621 | 49345477 | ID=Msa1330200-mRNA-1:five_prime_utr;Parent=Msa1330200-mRNA-1 |
| chr8_4 | CDS | 49345369 | 49345476 | 49345369 | ID=Msa1330200-mRNA-1:cds;Parent=Msa1330200-mRNA-1 |
| chr8_4 | CDS | 49345137 | 49345270 | 49345137 | ID=Msa1330200-mRNA-1:cds;Parent=Msa1330200-mRNA-1 |
| chr8_4 | CDS | 49344745 | 49345048 | 49344745 | ID=Msa1330200-mRNA-1:cds;Parent=Msa1330200-mRNA-1 |
| chr8_4 | CDS | 49344264 | 49344583 | 49344264 | ID=Msa1330200-mRNA-1:cds;Parent=Msa1330200-mRNA-1 |
| chr8_4 | CDS | 49342379 | 49342604 | 49342379 | ID=Msa1330200-mRNA-1:cds;Parent=Msa1330200-mRNA-1 |
| chr8_4 | three_prime_UTR | 49342103 | 49342378 | 49342103 | ID=Msa1330200-mRNA-1:three_prime_utr;Parent=Msa1330200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
