AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1333160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1333160 MtrunA17_Chr4g0068951 99.602 502 2 0 1 502 1 502 0.0 1015
Msa1333160 MtrunA17_Chr2g0294661 35.892 482 286 11 26 490 72 547 5.65e-76 249
Msa1333160 MtrunA17_Chr4g0068201 35.388 503 294 11 5 490 56 544 6.30e-76 249
Msa1333160 MtrunA17_Chr6g0462411 31.263 467 285 10 40 486 26 476 3.24e-61 208
Msa1333160 MtrunA17_Chr1g0184771 27.959 490 320 11 15 486 47 521 6.23e-49 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1333160 AT1G48030.2 85.827 508 65 4 1 502 1 507 0.0 874
Msa1333160 AT1G48030.5 85.827 508 65 4 1 502 1 507 0.0 874
Msa1333160 AT1G48030.3 85.827 508 65 4 1 502 1 507 0.0 874
Msa1333160 AT1G48030.1 85.827 508 65 4 1 502 1 507 0.0 874
Msa1333160 AT1G48030.4 85.827 508 65 4 1 502 1 507 0.0 874
Msa1333160 AT3G17240.1 85.630 508 66 3 1 502 1 507 0.0 872
Msa1333160 AT3G17240.3 85.630 508 66 3 1 502 1 507 0.0 872
Msa1333160 AT3G16950.1 34.989 463 257 11 55 490 103 548 6.92e-73 241
Msa1333160 AT4G16155.1 35.637 463 253 12 55 490 101 545 7.11e-73 241
Msa1333160 AT3G16950.2 34.989 463 257 11 55 490 103 548 2.11e-72 241
Msa1333160 AT3G24170.1 29.374 463 299 11 40 486 27 477 5.90e-53 187
Msa1333160 AT3G24170.2 29.374 463 299 11 40 486 27 477 5.90e-53 187
Msa1333160 AT3G24170.3 29.374 463 299 11 40 486 27 477 5.90e-53 187
Msa1333160 AT3G54660.1 27.400 500 323 11 9 486 53 534 4.22e-43 161
Msa1333160 AT3G17240.2 73.196 97 19 3 1 91 1 96 3.23e-32 120

Find 188 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCACTTCTGGACTTAATT+TGG 0.142487 8_4:+53203785 Msa1333160:CDS
CCAATGACATAAATATTTCT+TGG 0.252710 8_4:+53201575 Msa1333160:five_prime_UTR
GTGGTTGGAGTTGATACTTC+TGG 0.261463 8_4:+53203669 Msa1333160:CDS
CCCGATAACTACAAGCTTCT+TGG 0.267642 8_4:-53203478 None:intergenic
TTTCATCTTCCTTTGTTCAC+TGG 0.270946 8_4:+53204652 Msa1333160:three_prime_UTR
CCTTTGTGGAGGGCCATTAT+TGG 0.278288 8_4:-53201540 None:intergenic
TGACAAGGTAGGACGCATTT+TGG 0.289967 8_4:+53203827 Msa1333160:CDS
ACCAAGCTGAGCAGCTTTAA+TGG 0.289980 8_4:-53201892 None:intergenic
CCAAGAAATATTTATGTCAT+TGG 0.292164 8_4:-53201575 None:intergenic
GGTAGGACTCCATTCACTTC+TGG 0.310454 8_4:+53203774 Msa1333160:CDS
GACAACATCTGCTTCAATTA+TGG 0.320224 8_4:-53203739 None:intergenic
TTATAAATATTAAAGAAAAT+AGG 0.320426 8_4:+53201634 Msa1333160:five_prime_UTR
AAAGGCTGAATTTGCATTGC+AGG 0.320989 8_4:+53201476 Msa1333160:five_prime_UTR
AAGAAAATTGTATCATCAAC+AGG 0.323435 8_4:+53203432 Msa1333160:CDS
TGTGTGTTAAATTTAGATTC+AGG 0.327781 8_4:+53204436 Msa1333160:three_prime_UTR
CTTTGTGGAGGGCCATTATT+GGG 0.328504 8_4:-53201539 None:intergenic
AGGTCAAGAGGTTTCGCTTC+CGG 0.337458 8_4:+53201813 Msa1333160:CDS
TGTTGGGAAGTTCCCTTTCA+TGG 0.353483 8_4:+53204085 Msa1333160:CDS
CCCAAGAAGCTTGTAGTTAT+CGG 0.353692 8_4:+53203477 Msa1333160:CDS
AAAGGAGACGGACAAAATAT+TGG 0.354741 8_4:+53204166 Msa1333160:CDS
TTCATCTTCCTTTGTTCACT+GGG 0.355584 8_4:+53204653 Msa1333160:three_prime_UTR
GAGGAGCAGGTTAAGGAAAC+TGG 0.355744 8_4:+53204050 Msa1333160:CDS
CAGGCTCTTCAAATGTGAAT+TGG 0.356810 8_4:-53204347 None:intergenic
AATTGCCTTCGCCCTGCTAT+TGG 0.359778 8_4:-53204108 None:intergenic
CCGATAACTACAAGCTTCTT+GGG 0.373836 8_4:-53203477 None:intergenic
TTAACAGCCTCACTCATTGT+TGG 0.377486 8_4:-53204296 None:intergenic
AAGGAGACGGACAAAATATT+GGG 0.381037 8_4:+53204167 Msa1333160:CDS
GCAATTGGTGATGTAATTCC+CGG 0.389033 8_4:+53203888 Msa1333160:CDS
ATGAATGAGTTCTCCTGCAT+TGG 0.396625 8_4:-53204207 None:intergenic
GGCTAGAGATGGGCTCTGTA+TGG 0.404513 8_4:+53203514 Msa1333160:CDS
TCCCTTTCATGGCCAATAGC+AGG 0.405072 8_4:+53204096 Msa1333160:CDS
TGTCAAGATAATTGCTGAAA+AGG 0.408222 8_4:+53204148 Msa1333160:CDS
GAAGATGAAAATAAATCATA+TGG 0.409180 8_4:-53204639 None:intergenic
CCAAGAAGCTTGTAGTTATC+GGG 0.414079 8_4:+53203478 Msa1333160:CDS
GGCTCTGTATGGGGACGAAT+TGG 0.414655 8_4:+53203525 Msa1333160:CDS
TGGTTGGAGTTGATACTTCT+GGG 0.417457 8_4:+53203670 Msa1333160:CDS
CGAAGTCAAGGTAAAATCCT+TGG 0.419162 8_4:-53204402 None:intergenic
AATATTTATGTCATTGGACT+TGG 0.421046 8_4:-53201569 None:intergenic
TCCGTTACACTTTCTCTCTA+AGG 0.422319 8_4:+53201793 Msa1333160:CDS
GGACTTAATTTGGACAAGAT+AGG 0.423938 8_4:+53203795 Msa1333160:CDS
GAAGACAGAGGAGCAGGTTA+AGG 0.424716 8_4:+53204043 Msa1333160:CDS
GCTAGAGATGGGCTCTGTAT+GGG 0.427257 8_4:+53203515 Msa1333160:CDS
GGACTTGGATGATGCCTTTG+TGG 0.427326 8_4:-53201554 None:intergenic
GTCATCATCGGTGGTGGTCC+CGG 0.435774 8_4:+53201855 Msa1333160:CDS
TGTTGAGTACTTAGCTGGTA+AGG 0.436084 8_4:+53203953 Msa1333160:CDS
GCCATTAAAGCTGCTCAGCT+TGG 0.436823 8_4:+53201891 Msa1333160:CDS
CTGGAGTTCAATACCGTGTT+GGG 0.438229 8_4:+53204069 Msa1333160:CDS
AACGATGGCTATGGCGAACT+TGG 0.445916 8_4:+53201728 Msa1333160:exon
GAGAACGCTGAAACTGCTTC+CGG 0.449447 8_4:-53203608 None:intergenic
AACATTCATTTGCCAACCAT+GGG 0.450908 8_4:+53203148 Msa1333160:CDS
CTTCCGGATTTCTCCATCCA+TGG 0.451603 8_4:-53203592 None:intergenic
AATCGAAATGGAACCTTGGA+AGG 0.456741 8_4:-53201981 None:intergenic
GTCTGTTCACCACCAGCTGC+TGG 0.459349 8_4:-53203717 None:intergenic
AATCTGACCCGGGGTATTGA+AGG 0.459866 8_4:+53203237 Msa1333160:CDS
CAAGAGAATAAAGAAGCAAC+AGG 0.460671 8_4:-53204366 None:intergenic
TCTGCCTTGTGTGCCAACAT+TGG 0.464020 8_4:-53203912 None:intergenic
AGTACTTAGCTGGTAAGGTT+GGG 0.465511 8_4:+53203958 Msa1333160:CDS
TTATCGGGGCAGGTTACATT+GGG 0.466168 8_4:+53203493 Msa1333160:CDS
GCTTGTGTTGAGTACTTAGC+TGG 0.469925 8_4:+53203948 Msa1333160:CDS
ATATGGATCACTCAAATTGT+TGG 0.470792 8_4:-53204622 None:intergenic
CGTTGGTTGCATCCCTTCCA+AGG 0.471575 8_4:+53201968 Msa1333160:CDS
CATATTATGGCACCCAATGC+AGG 0.471769 8_4:+53204194 Msa1333160:CDS
TTCCCTACAGAAGCAACCTC+GGG 0.473270 8_4:-53204023 None:intergenic
CTGAATTTGCATTGCAGGTG+AGG 0.473656 8_4:+53201481 Msa1333160:five_prime_UTR
GGAGTTGATACTTCTGGGGA+TGG 0.475245 8_4:+53203675 Msa1333160:CDS
CAAATGAATGTTTAGCCTCA+TGG 0.478496 8_4:-53203137 None:intergenic
TGAATGAGTTCTCCTGCATT+GGG 0.481793 8_4:-53204206 None:intergenic
GTTATCGGGGCAGGTTACAT+TGG 0.485635 8_4:+53203492 Msa1333160:CDS
AGGTTACATTGGGCTAGAGA+TGG 0.486720 8_4:+53203503 Msa1333160:CDS
GAGTACTTAGCTGGTAAGGT+TGG 0.487434 8_4:+53203957 Msa1333160:CDS
CGGTCCAATGTTGGCACACA+AGG 0.493606 8_4:+53203908 Msa1333160:CDS
GTCTCGGGTGTCTATGCAAT+TGG 0.495457 8_4:+53203873 Msa1333160:CDS
GGCGAACTTGGCTCGTAGGA+AGG 0.497240 8_4:+53201740 Msa1333160:CDS
CCCTGCTATTGGCCATGAAA+GGG 0.502849 8_4:-53204097 None:intergenic
ATCGAAAAGCGTGGTGCTCT+TGG 0.503316 8_4:+53201930 Msa1333160:CDS
ATAGACACCCGAGACATTTG+TGG 0.506046 8_4:-53203865 None:intergenic
ACCCCGAGGTTGCTTCTGTA+GGG 0.507942 8_4:+53204021 Msa1333160:CDS
TGTAGGGAAGACAGAGGAGC+AGG 0.508653 8_4:+53204037 Msa1333160:CDS
GGGTTCCGCTCTTCTTTCAT+CGG 0.511274 8_4:+53201761 Msa1333160:CDS
GATGTTGTCCTTGTATCTGC+TGG 0.512028 8_4:+53203753 Msa1333160:CDS
GCCCTGCTATTGGCCATGAA+AGG 0.515476 8_4:-53204098 None:intergenic
CGGATTTCTCCATCCATGGA+TGG 0.518110 8_4:-53203588 None:intergenic
TAATATATATCTCTCCTCTC+AGG 0.519824 8_4:+53204544 Msa1333160:three_prime_UTR
GAAAACGACGTCGTCATCAT+CGG 0.520382 8_4:+53201843 Msa1333160:CDS
CTAGAGATGGGCTCTGTATG+GGG 0.523383 8_4:+53203516 Msa1333160:CDS
CATCCATGGATGGAGAAATC+CGG 0.523667 8_4:+53203589 Msa1333160:CDS
GTAACATATGTCAAAGGATA+CGG 0.525267 8_4:+53203279 Msa1333160:CDS
CAGCGTTCTCTTGAAAAGCA+AGG 0.526866 8_4:+53203621 Msa1333160:CDS
GCACACAAGGCAGAAGAAGA+TGG 0.528923 8_4:+53203921 Msa1333160:CDS
CCCTTTCATGGCCAATAGCA+GGG 0.531192 8_4:+53204097 Msa1333160:CDS
CATTTGAAACTTTGACCCCA+TGG 0.533125 8_4:-53203164 None:intergenic
GAAAAGCGTGGTGCTCTTGG+TGG 0.534842 8_4:+53201933 Msa1333160:CDS
TGAAACTTTGACCCCATGGT+TGG 0.535838 8_4:-53203160 None:intergenic
AAGCTTGTAGTTATCGGGGC+AGG 0.538965 8_4:+53203483 Msa1333160:CDS
ATCGCAGATTGTTCCATCCA+TGG 0.542630 8_4:+53203575 Msa1333160:CDS
AGCTGGTAAGGTTGGGCATG+TGG 0.543166 8_4:+53203965 Msa1333160:CDS
TGAATTTGCATTGCAGGTGA+GGG 0.546116 8_4:+53201482 Msa1333160:five_prime_UTR
CTTCCCTACAGAAGCAACCT+CGG 0.546875 8_4:-53204024 None:intergenic
GGTTACATTGGGCTAGAGAT+GGG 0.547643 8_4:+53203504 Msa1333160:CDS
AAAATTCCTTTCACCATCTG+AGG 0.547911 8_4:+53203302 Msa1333160:CDS
AAACATTCATTTGCCAACCA+TGG 0.549901 8_4:+53203147 Msa1333160:CDS
CAAATTGTTGGTCAGAAGCG+TGG 0.550148 8_4:-53204610 None:intergenic
CTAACTGTTGAACCAGCAGC+TGG 0.550199 8_4:+53203705 Msa1333160:CDS
AATGGCGGCGACGTAACCGC+CGG 0.551240 8_4:-53201874 None:intergenic
GATGCAACCAACGTTGAGAC+AGG 0.551664 8_4:-53201958 None:intergenic
AAGCTGTTTCTAATCTGACC+CGG 0.552292 8_4:+53203226 Msa1333160:CDS
TTGGATGATGCCTTTGTGGA+GGG 0.553519 8_4:-53201550 None:intergenic
CTATGGCGAACTTGGCTCGT+AGG 0.555334 8_4:+53201736 Msa1333160:CDS
GAGTCCTACCAGCAGATACA+AGG 0.558562 8_4:-53203761 None:intergenic
GTCTCTGTAGACACCGTTGA+AGG 0.558670 8_4:+53203324 Msa1333160:CDS
AAGCTGAATACCAAGGTGGT+TGG 0.558857 8_4:+53203654 Msa1333160:CDS
GCGAACTTGGCTCGTAGGAA+GGG 0.560636 8_4:+53201741 Msa1333160:CDS
TTGTCCTTGTATCTGCTGGT+AGG 0.563808 8_4:+53203757 Msa1333160:CDS
GATTGACTTAGCTGCCATGA+TGG 0.564118 8_4:+53203191 Msa1333160:CDS
ATGGCGGCGACGTAACCGCC+GGG 0.564412 8_4:-53201873 None:intergenic
AACCCCGAGGTTGCTTCTGT+AGG 0.567406 8_4:+53204020 Msa1333160:CDS
AAGAATCTTAACGATGGCTA+TGG 0.567804 8_4:+53201719 Msa1333160:exon
AAATTAAGTCCAGAAGTGAA+TGG 0.568714 8_4:-53203783 None:intergenic
AAATAGGCCTTCAATACCCC+GGG 0.569237 8_4:-53203244 None:intergenic
TGTAATTCCCGGTCCAATGT+TGG 0.569254 8_4:+53203899 Msa1333160:CDS
ACTTTCTCTCTAAGGTCAAG+AGG 0.569811 8_4:+53201801 Msa1333160:CDS
GTTTAGCCTCATGGTACATG+TGG 0.570391 8_4:-53203128 None:intergenic
AGCTGTTTCTAATCTGACCC+GGG 0.571089 8_4:+53203227 Msa1333160:CDS
TAAATAGGCCTTCAATACCC+CGG 0.573925 8_4:-53203245 None:intergenic
CAGATTGTTCCATCCATGGA+TGG 0.574676 8_4:+53203579 Msa1333160:CDS
GGCTGTTAAAGAAGCCGCAA+TGG 0.578312 8_4:+53204310 Msa1333160:CDS
GACGTCGTCATCATCGGTGG+TGG 0.579886 8_4:+53201849 Msa1333160:CDS
CAGAGACCTCAGATGGTGAA+AGG 0.580741 8_4:-53203308 None:intergenic
CTTGTGTGCCAACATTGGAC+CGG 0.581579 8_4:-53203907 None:intergenic
AAATTGTTGGTCAGAAGCGT+GGG 0.582349 8_4:-53204609 None:intergenic
CTTGGATGATGCCTTTGTGG+AGG 0.584619 8_4:-53201551 None:intergenic
ACTGGAGTTCAATACCGTGT+TGG 0.590339 8_4:+53204068 Msa1333160:CDS
GAGATATATATTATTCAGCA+AGG 0.591234 8_4:-53204534 None:intergenic
AACAAGGTAACATATGTCAA+AGG 0.591345 8_4:+53203273 Msa1333160:CDS
AAGGTATCTTCTCGAAGTCA+AGG 0.591582 8_4:-53204414 None:intergenic
AAGCATATCATTATAGCCAC+CGG 0.595212 8_4:+53203369 Msa1333160:CDS
TTCCGCTCTTCTTTCATCGG+CGG 0.602872 8_4:+53201764 Msa1333160:CDS
GTGAATTGGCTTGTCATAAG+TGG 0.602908 8_4:-53204333 None:intergenic
GTGGACTATGACAAAGTACC+AGG 0.603832 8_4:+53203984 Msa1333160:CDS
GGTGAAAATACTGTTGTGAA+AGG 0.605474 8_4:+53203345 Msa1333160:CDS
CATGGCCAATAGCAGGGCGA+AGG 0.605899 8_4:+53204103 Msa1333160:CDS
CGATAACTACAAGCTTCTTG+GGG 0.608524 8_4:-53203476 None:intergenic
CCAATAATGGCCCTCCACAA+AGG 0.609921 8_4:+53201540 Msa1333160:five_prime_UTR
GGTTGGAGTTGATACTTCTG+GGG 0.615833 8_4:+53203671 Msa1333160:CDS
GATAATTGCTGAAAAGGAGA+CGG 0.617580 8_4:+53204154 Msa1333160:CDS
CTAATAAGAATAGAAAGCAA+AGG 0.619702 8_4:+53201458 None:intergenic
GGTGGTACCTGTCTCAACGT+TGG 0.621896 8_4:+53201951 Msa1333160:CDS
AGTATCAACTCCAACCACCT+TGG 0.623456 8_4:-53203664 None:intergenic
ATGGGGACGAATTGGCTCTG+AGG 0.627284 8_4:+53203533 Msa1333160:CDS
ACCTTAGAGAGAAAGTGTAA+CGG 0.630266 8_4:-53201794 None:intergenic
AAGGCAATTGATAACGCTGA+AGG 0.632613 8_4:+53204122 Msa1333160:CDS
TTGTGTGCCAACATTGGACC+GGG 0.636415 8_4:-53203906 None:intergenic
GGAGTTGAAACTGACAAGGT+AGG 0.637183 8_4:+53203816 Msa1333160:CDS
TGGGGTCAAAGTTTCAAATG+TGG 0.638191 8_4:+53203167 Msa1333160:CDS
TCAGATGTAAAATCTCTACC+TGG 0.641837 8_4:+53203393 Msa1333160:CDS
GGGTTTGTATAGACAACACC+TGG 0.647094 8_4:-53204002 None:intergenic
AGAAAATTGTATCATCAACA+GGG 0.647191 8_4:+53203433 Msa1333160:CDS
TAGAAGAAGAATCTTAACGA+TGG 0.649345 8_4:+53201713 Msa1333160:exon
AACTTAAACCCAGTGAACAA+AGG 0.649997 8_4:-53204661 None:intergenic
GTGTCTACAGAGACCTCAGA+TGG 0.651528 8_4:-53203315 None:intergenic
ATTACAAGATTGCTCCTGAG+AGG 0.653847 8_4:-53204558 None:intergenic
CAAGAAGCTTGTAGTTATCG+GGG 0.654159 8_4:+53203479 Msa1333160:CDS
AACGACGTCGTCATCATCGG+TGG 0.658246 8_4:+53201846 Msa1333160:CDS
TGCACATCCAACAATGAGTG+AGG 0.658611 8_4:+53204289 Msa1333160:CDS
TTTAGCCTCATGGTACATGT+GGG 0.660235 8_4:-53203127 None:intergenic
AGGAGACGGACAAAATATTG+GGG 0.662760 8_4:+53204168 Msa1333160:CDS
GCAGTATGATGCATCAAGTG+AGG 0.668547 8_4:+53204247 Msa1333160:CDS
GCTGTTTCTAATCTGACCCG+GGG 0.668806 8_4:+53203228 Msa1333160:CDS
TGAAAGGGAACTTCCCAACA+CGG 0.669482 8_4:-53204082 None:intergenic
ATCGAAATGGAACCTTGGAA+GGG 0.671194 8_4:-53201980 None:intergenic
GAATCTAAATTTAACACACA+AGG 0.671699 8_4:-53204433 None:intergenic
ACCACTTGCATCGAAAAGCG+TGG 0.672031 8_4:+53201921 Msa1333160:CDS
CTCCGCCGATGAAAGAAGAG+CGG 0.675152 8_4:-53201766 None:intergenic
GAAATTCAAGCTGAATACCA+AGG 0.679504 8_4:+53203647 Msa1333160:CDS
GAAAATTGTATCATCAACAG+GGG 0.680955 8_4:+53203434 Msa1333160:CDS
GGAGACGGACAAAATATTGG+GGG 0.685454 8_4:+53204169 Msa1333160:CDS
CTTGTCATAAGTGGCCATTG+CGG 0.687064 8_4:-53204324 None:intergenic
TGCATCATACTGCAATGCAA+TGG 0.690908 8_4:-53204237 None:intergenic
TCCCTACAGAAGCAACCTCG+GGG 0.694823 8_4:-53204022 None:intergenic
AAGCTGAGCAGCTTTAATGG+CGG 0.697561 8_4:-53201889 None:intergenic
ACTGTTGAACCAGCAGCTGG+TGG 0.697745 8_4:+53203708 Msa1333160:CDS
ACATTCATTTGCCAACCATG+GGG 0.697828 8_4:+53203149 Msa1333160:CDS
GATAGGAGTTGAAACTGACA+AGG 0.698372 8_4:+53203812 Msa1333160:CDS
ATCATCGGTGGTGGTCCCGG+CGG 0.698397 8_4:+53201858 Msa1333160:CDS
TGCTTCTGTAGGGAAGACAG+AGG 0.698830 8_4:+53204031 Msa1333160:CDS
TTCTTCCCACATGTACCATG+AGG 0.705759 8_4:+53203122 Msa1333160:CDS
ATTCAAGCTGAATACCAAGG+TGG 0.721568 8_4:+53203650 Msa1333160:CDS
TGTTGTCTATACAAACCCCG+AGG 0.780319 8_4:+53204007 Msa1333160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTATTAAAATAATACAT+GGG - chr8_4:53203062-53203081 None:intergenic 10.0%
!! ATTACTATTAAAATAATACA+TGG - chr8_4:53203063-53203082 None:intergenic 10.0%
!! ATATTAAAAAATCCCAATAA+TGG + chr8_4:53201527-53201546 Msa1333160:five_prime_UTR 15.0%
!!! TTTTTAATTGATTAAGTTGA+AGG + chr8_4:53202091-53202110 Msa1333160:intron 15.0%
!!! TTTTTGTTATTTTCGATTTT+TGG + chr8_4:53202122-53202141 Msa1333160:intron 15.0%
!! CTAAAACAAAAGATAAAATA+AGG + chr8_4:53202367-53202386 Msa1333160:intron 15.0%
!! AGCATATTATATTAAATCAT+TGG + chr8_4:53202872-53202891 Msa1333160:intron 15.0%
!! ATATCATTTAACATACAATT+TGG - chr8_4:53202940-53202959 None:intergenic 15.0%
!! AAATTGTATGTTAAATGATA+TGG + chr8_4:53202939-53202958 Msa1333160:intron 15.0%
!! TACTATTAAAATAATACATG+GGG - chr8_4:53203061-53203080 None:intergenic 15.0%
!! CTATATGAGAAAAAATGAAT+AGG - chr8_4:53202023-53202042 None:intergenic 20.0%
!! AATTAAAAAATACTTGACAC+AGG - chr8_4:53202769-53202788 None:intergenic 20.0%
!!! TTACCTTGTTTTTCTTAAAT+AGG - chr8_4:53203263-53203282 None:intergenic 20.0%
!!! AATCTTGTAATTTTGACAAT+TGG + chr8_4:53204570-53204589 Msa1333160:three_prime_UTR 20.0%
!!! ATCTTGTAATTTTGACAATT+GGG + chr8_4:53204571-53204590 Msa1333160:three_prime_UTR 20.0%
!! GAAGATGAAAATAAATCATA+TGG - chr8_4:53204642-53204661 None:intergenic 20.0%
! AATATTTATGTCATTGGACT+TGG - chr8_4:53201572-53201591 None:intergenic 25.0%
! CCAAGAAATATTTATGTCAT+TGG - chr8_4:53201578-53201597 None:intergenic 25.0%
! CCAATGACATAAATATTTCT+TGG + chr8_4:53201575-53201594 Msa1333160:five_prime_UTR 25.0%
! TTCTCATATAGATATAGATG+TGG + chr8_4:53202032-53202051 Msa1333160:intron 25.0%
!! TGTTTATATTTCTGTGTCTT+TGG + chr8_4:53202206-53202225 Msa1333160:intron 25.0%
! ATTATTAGATTTAGCTGGAT+GGG + chr8_4:53202597-53202616 Msa1333160:intron 25.0%
! AGAGAGTAAACATATTGTTA+TGG + chr8_4:53202815-53202834 Msa1333160:intron 25.0%
! ACATTCAATTCGTTAATCAA+CGG - chr8_4:53202842-53202861 None:intergenic 25.0%
! AAGAAAATTGTATCATCAAC+AGG + chr8_4:53203432-53203451 Msa1333160:CDS 25.0%
! AGAAAATTGTATCATCAACA+GGG + chr8_4:53203433-53203452 Msa1333160:CDS 25.0%
! GAATCTAAATTTAACACACA+AGG - chr8_4:53204436-53204455 None:intergenic 25.0%
! TGTGTGTTAAATTTAGATTC+AGG + chr8_4:53204436-53204455 Msa1333160:three_prime_UTR 25.0%
! GAGATATATATTATTCAGCA+AGG - chr8_4:53204537-53204556 None:intergenic 25.0%
TAGAAGAAGAATCTTAACGA+TGG + chr8_4:53201713-53201732 Msa1333160:exon 30.0%
AGTAGAAAAGTGAATCGAAA+TGG - chr8_4:53201996-53202015 None:intergenic 30.0%
!! CTTTGATTTTGGATGAACAT+CGG + chr8_4:53202182-53202201 Msa1333160:intron 30.0%
TTAAGCTGTTTATCCAAACA+GGG - chr8_4:53202301-53202320 None:intergenic 30.0%
ATTAAGCTGTTTATCCAAAC+AGG - chr8_4:53202302-53202321 None:intergenic 30.0%
ATGAATAGCGCTTATGTATA+AGG + chr8_4:53202339-53202358 Msa1333160:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr8_4:53202452-53202471 Msa1333160:intron 30.0%
TCCAGCTAAATCTAATAATC+CGG - chr8_4:53202596-53202615 None:intergenic 30.0%
GATTATTAGATTTAGCTGGA+TGG + chr8_4:53202596-53202615 Msa1333160:intron 30.0%
! TAACTTTTCGTAGAGTCATT+TGG + chr8_4:53202676-53202695 Msa1333160:intron 30.0%
!!! CTCTTTTTTAAAGTCTACTC+TGG + chr8_4:53202710-53202729 Msa1333160:intron 30.0%
CTAAACTTGTATTAACCTCT+TGG + chr8_4:53202740-53202759 Msa1333160:intron 30.0%
ATGTTTACTCTCTAACATCT+GGG - chr8_4:53202808-53202827 None:intergenic 30.0%
TATGTTTACTCTCTAACATC+TGG - chr8_4:53202809-53202828 None:intergenic 30.0%
! ACTCTTGATTTTCTCACTTT+AGG + chr8_4:53202910-53202929 Msa1333160:intron 30.0%
! CTCTTGATTTTCTCACTTTA+GGG + chr8_4:53202911-53202930 Msa1333160:intron 30.0%
! TCTTGATTTTCTCACTTTAG+GGG + chr8_4:53202912-53202931 Msa1333160:intron 30.0%
GTATGTTAAATGATATGGTC+TGG + chr8_4:53202944-53202963 Msa1333160:intron 30.0%
! TAAATGATATGGTCTGGAAT+TGG + chr8_4:53202950-53202969 Msa1333160:intron 30.0%
AGGCCTATTTAAGAAAAACA+AGG + chr8_4:53203257-53203276 Msa1333160:CDS 30.0%
AACAAGGTAACATATGTCAA+AGG + chr8_4:53203273-53203292 Msa1333160:CDS 30.0%
GTAACATATGTCAAAGGATA+CGG + chr8_4:53203279-53203298 Msa1333160:CDS 30.0%
! AACAGTATTTTCACCTTCAA+CGG - chr8_4:53203340-53203359 None:intergenic 30.0%
! TAGAGATTTTACATCTGAAC+CGG - chr8_4:53203391-53203410 None:intergenic 30.0%
GAAAATTGTATCATCAACAG+GGG + chr8_4:53203434-53203453 Msa1333160:CDS 30.0%
AAATTAAGTCCAGAAGTGAA+TGG - chr8_4:53203786-53203805 None:intergenic 30.0%
ATTCACTTCTGGACTTAATT+TGG + chr8_4:53203785-53203804 Msa1333160:CDS 30.0%
TGTCAAGATAATTGCTGAAA+AGG + chr8_4:53204148-53204167 Msa1333160:CDS 30.0%
!! CTTGTTTTCATTTTTGTCCA+AGG + chr8_4:53204385-53204404 Msa1333160:three_prime_UTR 30.0%
TAATATATATCTCTCCTCTC+AGG + chr8_4:53204544-53204563 Msa1333160:three_prime_UTR 30.0%
ATATGGATCACTCAAATTGT+TGG - chr8_4:53204625-53204644 None:intergenic 30.0%
AAGAATCTTAACGATGGCTA+TGG + chr8_4:53201719-53201738 Msa1333160:exon 35.0%
! ACCTTAGAGAGAAAGTGTAA+CGG - chr8_4:53201797-53201816 None:intergenic 35.0%
!!! CAAGTTAGTTTTTTCTGCTG+AGG + chr8_4:53202150-53202169 Msa1333160:intron 35.0%
TCTTGATTTAATGCCCTGTT+TGG + chr8_4:53202285-53202304 Msa1333160:intron 35.0%
AAACATTTGCGAGACTGTTT+GGG - chr8_4:53202507-53202526 None:intergenic 35.0%
AAAACATTTGCGAGACTGTT+TGG - chr8_4:53202508-53202527 None:intergenic 35.0%
ACCGGATTATTAGATTTAGC+TGG + chr8_4:53202592-53202611 Msa1333160:intron 35.0%
AAAACCATATTCCACTAGGT+GGG - chr8_4:53203018-53203037 None:intergenic 35.0%
AACCAAAACCATATTCCACT+AGG - chr8_4:53203022-53203041 None:intergenic 35.0%
TTGTGTTGCCTTCATATTTC+AGG + chr8_4:53203089-53203108 Msa1333160:intron 35.0%
CAAATGAATGTTTAGCCTCA+TGG - chr8_4:53203140-53203159 None:intergenic 35.0%
AAACATTCATTTGCCAACCA+TGG + chr8_4:53203147-53203166 Msa1333160:CDS 35.0%
AACATTCATTTGCCAACCAT+GGG + chr8_4:53203148-53203167 Msa1333160:CDS 35.0%
AAAATTCCTTTCACCATCTG+AGG + chr8_4:53203302-53203321 Msa1333160:CDS 35.0%
GGTGAAAATACTGTTGTGAA+AGG + chr8_4:53203345-53203364 Msa1333160:CDS 35.0%
AAGCATATCATTATAGCCAC+CGG + chr8_4:53203369-53203388 Msa1333160:CDS 35.0%
TCAGATGTAAAATCTCTACC+TGG + chr8_4:53203393-53203412 Msa1333160:CDS 35.0%
GAAATTCAAGCTGAATACCA+AGG + chr8_4:53203647-53203666 Msa1333160:CDS 35.0%
GACAACATCTGCTTCAATTA+TGG - chr8_4:53203742-53203761 None:intergenic 35.0%
! GGACTTAATTTGGACAAGAT+AGG + chr8_4:53203795-53203814 Msa1333160:CDS 35.0%
!! GACGCATTTTGGTAAATGAA+AGG + chr8_4:53203838-53203857 Msa1333160:CDS 35.0%
! AAGGTTTTCCACAAATGTCT+CGG + chr8_4:53203857-53203876 Msa1333160:CDS 35.0%
GATAATTGCTGAAAAGGAGA+CGG + chr8_4:53204154-53204173 Msa1333160:CDS 35.0%
AAAGGAGACGGACAAAATAT+TGG + chr8_4:53204166-53204185 Msa1333160:CDS 35.0%
AAGGAGACGGACAAAATATT+GGG + chr8_4:53204167-53204186 Msa1333160:CDS 35.0%
! AATATTGGGGGTGCATATTA+TGG + chr8_4:53204181-53204200 Msa1333160:CDS 35.0%
CAAGAGAATAAAGAAGCAAC+AGG - chr8_4:53204369-53204388 None:intergenic 35.0%
TTTCATCTTCCTTTGTTCAC+TGG + chr8_4:53204652-53204671 Msa1333160:three_prime_UTR 35.0%
TTCATCTTCCTTTGTTCACT+GGG + chr8_4:53204653-53204672 Msa1333160:three_prime_UTR 35.0%
AACTTAAACCCAGTGAACAA+AGG - chr8_4:53204664-53204683 None:intergenic 35.0%
AAAGGCTGAATTTGCATTGC+AGG + chr8_4:53201476-53201495 Msa1333160:five_prime_UTR 40.0%
TGAATTTGCATTGCAGGTGA+GGG + chr8_4:53201482-53201501 Msa1333160:five_prime_UTR 40.0%
!! TAGGTTTTGCTGTGTGTGTT+AGG + chr8_4:53201653-53201672 Msa1333160:five_prime_UTR 40.0%
TCCGTTACACTTTCTCTCTA+AGG + chr8_4:53201793-53201812 Msa1333160:CDS 40.0%
!! ACTTTCTCTCTAAGGTCAAG+AGG + chr8_4:53201801-53201820 Msa1333160:CDS 40.0%
ATCGAAATGGAACCTTGGAA+GGG - chr8_4:53201983-53202002 None:intergenic 40.0%
AATCGAAATGGAACCTTGGA+AGG - chr8_4:53201984-53202003 None:intergenic 40.0%
AGTGAATCGAAATGGAACCT+TGG - chr8_4:53201988-53202007 None:intergenic 40.0%
!!! GTTAGTTTTTTCTGCTGAGG+TGG + chr8_4:53202153-53202172 Msa1333160:intron 40.0%
!!! GGTGGAGAGTACTTTGATTT+TGG + chr8_4:53202171-53202190 Msa1333160:intron 40.0%
AAACCATATTCCACTAGGTG+GGG - chr8_4:53203017-53203036 None:intergenic 40.0%
CAAAACCATATTCCACTAGG+TGG - chr8_4:53203019-53203038 None:intergenic 40.0%
! CACCTAGTGGAATATGGTTT+TGG + chr8_4:53203017-53203036 Msa1333160:intron 40.0%
!! CAAAAGCGCCTGAAATATGA+AGG - chr8_4:53203100-53203119 None:intergenic 40.0%
TTTAGCCTCATGGTACATGT+GGG - chr8_4:53203130-53203149 None:intergenic 40.0%
ACATTCATTTGCCAACCATG+GGG + chr8_4:53203149-53203168 Msa1333160:CDS 40.0%
! CATTTGAAACTTTGACCCCA+TGG - chr8_4:53203167-53203186 None:intergenic 40.0%
TGGGGTCAAAGTTTCAAATG+TGG + chr8_4:53203167-53203186 Msa1333160:CDS 40.0%
! TTTGTCTTTTTGCGCCATCA+TGG - chr8_4:53203208-53203227 None:intergenic 40.0%
!! AAGCTGTTTCTAATCTGACC+CGG + chr8_4:53203226-53203245 Msa1333160:CDS 40.0%
TAAATAGGCCTTCAATACCC+CGG - chr8_4:53203248-53203267 None:intergenic 40.0%
! AGATTTTACATCTGAACCGG+TGG - chr8_4:53203388-53203407 None:intergenic 40.0%
! TTTTCATCAATAGTGACGCC+AGG - chr8_4:53203414-53203433 None:intergenic 40.0%
CGATAACTACAAGCTTCTTG+GGG - chr8_4:53203479-53203498 None:intergenic 40.0%
CCGATAACTACAAGCTTCTT+GGG - chr8_4:53203480-53203499 None:intergenic 40.0%
CCCAAGAAGCTTGTAGTTAT+CGG + chr8_4:53203477-53203496 Msa1333160:CDS 40.0%
CCAAGAAGCTTGTAGTTATC+GGG + chr8_4:53203478-53203497 Msa1333160:CDS 40.0%
CAAGAAGCTTGTAGTTATCG+GGG + chr8_4:53203479-53203498 Msa1333160:CDS 40.0%
ATTCAAGCTGAATACCAAGG+TGG + chr8_4:53203650-53203669 Msa1333160:CDS 40.0%
!! TGGTTGGAGTTGATACTTCT+GGG + chr8_4:53203670-53203689 Msa1333160:CDS 40.0%
GATAGGAGTTGAAACTGACA+AGG + chr8_4:53203812-53203831 Msa1333160:CDS 40.0%
! AGGTTTTCCACAAATGTCTC+GGG + chr8_4:53203858-53203877 Msa1333160:CDS 40.0%
!! GCAATTGGTGATGTAATTCC+CGG + chr8_4:53203888-53203907 Msa1333160:CDS 40.0%
TGTTGAGTACTTAGCTGGTA+AGG + chr8_4:53203953-53203972 Msa1333160:CDS 40.0%
AGTACTTAGCTGGTAAGGTT+GGG + chr8_4:53203958-53203977 Msa1333160:CDS 40.0%
!! AAGGCAATTGATAACGCTGA+AGG + chr8_4:53204122-53204141 Msa1333160:CDS 40.0%
AGGAGACGGACAAAATATTG+GGG + chr8_4:53204168-53204187 Msa1333160:CDS 40.0%
TGAATGAGTTCTCCTGCATT+GGG - chr8_4:53204209-53204228 None:intergenic 40.0%
ATGAATGAGTTCTCCTGCAT+TGG - chr8_4:53204210-53204229 None:intergenic 40.0%
TGCATCATACTGCAATGCAA+TGG - chr8_4:53204240-53204259 None:intergenic 40.0%
TTAACAGCCTCACTCATTGT+TGG - chr8_4:53204299-53204318 None:intergenic 40.0%
!! GTGAATTGGCTTGTCATAAG+TGG - chr8_4:53204336-53204355 None:intergenic 40.0%
CAGGCTCTTCAAATGTGAAT+TGG - chr8_4:53204350-53204369 None:intergenic 40.0%
CGAAGTCAAGGTAAAATCCT+TGG - chr8_4:53204405-53204424 None:intergenic 40.0%
! AAGGTATCTTCTCGAAGTCA+AGG - chr8_4:53204417-53204436 None:intergenic 40.0%
ATTACAAGATTGCTCCTGAG+AGG - chr8_4:53204561-53204580 None:intergenic 40.0%
! AAATTGTTGGTCAGAAGCGT+GGG - chr8_4:53204612-53204631 None:intergenic 40.0%
CTGAATTTGCATTGCAGGTG+AGG + chr8_4:53201481-53201500 Msa1333160:five_prime_UTR 45.0%
CTTTGTGGAGGGCCATTATT+GGG - chr8_4:53201542-53201561 None:intergenic 45.0%
TTGGATGATGCCTTTGTGGA+GGG - chr8_4:53201553-53201572 None:intergenic 45.0%
!! GACGTCGTTTTCATCAGATC+CGG - chr8_4:53201835-53201854 None:intergenic 45.0%
GAAAACGACGTCGTCATCAT+CGG + chr8_4:53201843-53201862 Msa1333160:CDS 45.0%
! AAGCTGAGCAGCTTTAATGG+CGG - chr8_4:53201892-53201911 None:intergenic 45.0%
! ACCAAGCTGAGCAGCTTTAA+TGG - chr8_4:53201895-53201914 None:intergenic 45.0%
!! GCTGTTTTCTTAAGCTGTCG+TGG + chr8_4:53202417-53202436 Msa1333160:intron 45.0%
AAGCTGTCGTGGAGAACTTA+TGG + chr8_4:53202428-53202447 Msa1333160:intron 45.0%
GACAAGCGCTTAGACATGAA+GGG - chr8_4:53202569-53202588 None:intergenic 45.0%
AGACAAGCGCTTAGACATGA+AGG - chr8_4:53202570-53202589 None:intergenic 45.0%
GTCTAAGCGCTTGTCTTAAC+CGG + chr8_4:53202574-53202593 Msa1333160:intron 45.0%
ACTTGACACAGGAAACCAAG+AGG - chr8_4:53202758-53202777 None:intergenic 45.0%
TTCTTCCCACATGTACCATG+AGG + chr8_4:53203122-53203141 Msa1333160:CDS 45.0%
GTTTAGCCTCATGGTACATG+TGG - chr8_4:53203131-53203150 None:intergenic 45.0%
TGAAACTTTGACCCCATGGT+TGG - chr8_4:53203163-53203182 None:intergenic 45.0%
! GATTGACTTAGCTGCCATGA+TGG + chr8_4:53203191-53203210 Msa1333160:CDS 45.0%
!! AGCTGTTTCTAATCTGACCC+GGG + chr8_4:53203227-53203246 Msa1333160:CDS 45.0%
AAATAGGCCTTCAATACCCC+GGG - chr8_4:53203247-53203266 None:intergenic 45.0%
CCCGATAACTACAAGCTTCT+TGG - chr8_4:53203481-53203500 None:intergenic 45.0%
TTATCGGGGCAGGTTACATT+GGG + chr8_4:53203493-53203512 Msa1333160:CDS 45.0%
! AGGTTACATTGGGCTAGAGA+TGG + chr8_4:53203503-53203522 Msa1333160:CDS 45.0%
! GGTTACATTGGGCTAGAGAT+GGG + chr8_4:53203504-53203523 Msa1333160:CDS 45.0%
ATCGCAGATTGTTCCATCCA+TGG + chr8_4:53203575-53203594 Msa1333160:CDS 45.0%
CAGATTGTTCCATCCATGGA+TGG + chr8_4:53203579-53203598 Msa1333160:CDS 45.0%
CATCCATGGATGGAGAAATC+CGG + chr8_4:53203589-53203608 Msa1333160:CDS 45.0%
CAGCGTTCTCTTGAAAAGCA+AGG + chr8_4:53203621-53203640 Msa1333160:CDS 45.0%
AAGCTGAATACCAAGGTGGT+TGG + chr8_4:53203654-53203673 Msa1333160:CDS 45.0%
AGTATCAACTCCAACCACCT+TGG - chr8_4:53203667-53203686 None:intergenic 45.0%
!! GTGGTTGGAGTTGATACTTC+TGG + chr8_4:53203669-53203688 Msa1333160:CDS 45.0%
!! GGTTGGAGTTGATACTTCTG+GGG + chr8_4:53203671-53203690 Msa1333160:CDS 45.0%
GATGTTGTCCTTGTATCTGC+TGG + chr8_4:53203753-53203772 Msa1333160:CDS 45.0%
TTGTCCTTGTATCTGCTGGT+AGG + chr8_4:53203757-53203776 Msa1333160:CDS 45.0%
GGAGTTGAAACTGACAAGGT+AGG + chr8_4:53203816-53203835 Msa1333160:CDS 45.0%
! TGACAAGGTAGGACGCATTT+TGG + chr8_4:53203827-53203846 Msa1333160:CDS 45.0%
ATAGACACCCGAGACATTTG+TGG - chr8_4:53203868-53203887 None:intergenic 45.0%
TGTAATTCCCGGTCCAATGT+TGG + chr8_4:53203899-53203918 Msa1333160:CDS 45.0%
GCTTGTGTTGAGTACTTAGC+TGG + chr8_4:53203948-53203967 Msa1333160:CDS 45.0%
GAGTACTTAGCTGGTAAGGT+TGG + chr8_4:53203957-53203976 Msa1333160:CDS 45.0%
! GTGGACTATGACAAAGTACC+AGG + chr8_4:53203984-53204003 Msa1333160:CDS 45.0%
GGGTTTGTATAGACAACACC+TGG - chr8_4:53204005-53204024 None:intergenic 45.0%
TGTTGTCTATACAAACCCCG+AGG + chr8_4:53204007-53204026 Msa1333160:CDS 45.0%
ACTGGAGTTCAATACCGTGT+TGG + chr8_4:53204068-53204087 Msa1333160:CDS 45.0%
CTGGAGTTCAATACCGTGTT+GGG + chr8_4:53204069-53204088 Msa1333160:CDS 45.0%
TGAAAGGGAACTTCCCAACA+CGG - chr8_4:53204085-53204104 None:intergenic 45.0%
TGTTGGGAAGTTCCCTTTCA+TGG + chr8_4:53204085-53204104 Msa1333160:CDS 45.0%
GGAGACGGACAAAATATTGG+GGG + chr8_4:53204169-53204188 Msa1333160:CDS 45.0%
CATATTATGGCACCCAATGC+AGG + chr8_4:53204194-53204213 Msa1333160:CDS 45.0%
GCAGTATGATGCATCAAGTG+AGG + chr8_4:53204247-53204266 Msa1333160:CDS 45.0%
TGCACATCCAACAATGAGTG+AGG + chr8_4:53204289-53204308 Msa1333160:CDS 45.0%
CTTGTCATAAGTGGCCATTG+CGG - chr8_4:53204327-53204346 None:intergenic 45.0%
CAAATTGTTGGTCAGAAGCG+TGG - chr8_4:53204613-53204632 None:intergenic 45.0%
!! TTATAAATATTAAAGAAAAT+AGG + chr8_4:53201634-53201653 Msa1333160:five_prime_UTR 5.0%
CCTTTGTGGAGGGCCATTAT+TGG - chr8_4:53201543-53201562 None:intergenic 50.0%
CCAATAATGGCCCTCCACAA+AGG + chr8_4:53201540-53201559 Msa1333160:five_prime_UTR 50.0%
CTTGGATGATGCCTTTGTGG+AGG - chr8_4:53201554-53201573 None:intergenic 50.0%
GGACTTGGATGATGCCTTTG+TGG - chr8_4:53201557-53201576 None:intergenic 50.0%
AACGATGGCTATGGCGAACT+TGG + chr8_4:53201728-53201747 Msa1333160:exon 50.0%
GGGTTCCGCTCTTCTTTCAT+CGG + chr8_4:53201761-53201780 Msa1333160:CDS 50.0%
TTCCGCTCTTCTTTCATCGG+CGG + chr8_4:53201764-53201783 Msa1333160:CDS 50.0%
AGGTCAAGAGGTTTCGCTTC+CGG + chr8_4:53201813-53201832 Msa1333160:CDS 50.0%
GCCATTAAAGCTGCTCAGCT+TGG + chr8_4:53201891-53201910 Msa1333160:CDS 50.0%
ACCACTTGCATCGAAAAGCG+TGG + chr8_4:53201921-53201940 Msa1333160:CDS 50.0%
! ACCACGCTTTTCGATGCAAG+TGG - chr8_4:53201925-53201944 None:intergenic 50.0%
! ATCGAAAAGCGTGGTGCTCT+TGG + chr8_4:53201930-53201949 Msa1333160:CDS 50.0%
GATGCAACCAACGTTGAGAC+AGG - chr8_4:53201961-53201980 None:intergenic 50.0%
CACTAGGTGGGGTGACTATA+TGG - chr8_4:53203006-53203025 None:intergenic 50.0%
CATATAGTCACCCCACCTAG+TGG + chr8_4:53203004-53203023 Msa1333160:intron 50.0%
TCACCCCACCTAGTGGAATA+TGG + chr8_4:53203011-53203030 Msa1333160:intron 50.0%
!! GCTGTTTCTAATCTGACCCG+GGG + chr8_4:53203228-53203247 Msa1333160:CDS 50.0%
!! AATCTGACCCGGGGTATTGA+AGG + chr8_4:53203237-53203256 Msa1333160:CDS 50.0%
CAGAGACCTCAGATGGTGAA+AGG - chr8_4:53203311-53203330 None:intergenic 50.0%
GTGTCTACAGAGACCTCAGA+TGG - chr8_4:53203318-53203337 None:intergenic 50.0%
GTCTCTGTAGACACCGTTGA+AGG + chr8_4:53203324-53203343 Msa1333160:CDS 50.0%
AAGCTTGTAGTTATCGGGGC+AGG + chr8_4:53203483-53203502 Msa1333160:CDS 50.0%
GTTATCGGGGCAGGTTACAT+TGG + chr8_4:53203492-53203511 Msa1333160:CDS 50.0%
! GCTAGAGATGGGCTCTGTAT+GGG + chr8_4:53203515-53203534 Msa1333160:CDS 50.0%
! CTAGAGATGGGCTCTGTATG+GGG + chr8_4:53203516-53203535 Msa1333160:CDS 50.0%
CGGATTTCTCCATCCATGGA+TGG - chr8_4:53203591-53203610 None:intergenic 50.0%
CTTCCGGATTTCTCCATCCA+TGG - chr8_4:53203595-53203614 None:intergenic 50.0%
GAGAACGCTGAAACTGCTTC+CGG - chr8_4:53203611-53203630 None:intergenic 50.0%
!! GGAGTTGATACTTCTGGGGA+TGG + chr8_4:53203675-53203694 Msa1333160:CDS 50.0%
CTAACTGTTGAACCAGCAGC+TGG + chr8_4:53203705-53203724 Msa1333160:CDS 50.0%
GAGTCCTACCAGCAGATACA+AGG - chr8_4:53203764-53203783 None:intergenic 50.0%
GGTAGGACTCCATTCACTTC+TGG + chr8_4:53203774-53203793 Msa1333160:CDS 50.0%
GTCTCGGGTGTCTATGCAAT+TGG + chr8_4:53203873-53203892 Msa1333160:CDS 50.0%
TTGTGTGCCAACATTGGACC+GGG - chr8_4:53203909-53203928 None:intergenic 50.0%
CTTGTGTGCCAACATTGGAC+CGG - chr8_4:53203910-53203929 None:intergenic 50.0%
TCTGCCTTGTGTGCCAACAT+TGG - chr8_4:53203915-53203934 None:intergenic 50.0%
GCACACAAGGCAGAAGAAGA+TGG + chr8_4:53203921-53203940 Msa1333160:CDS 50.0%
TTCCCTACAGAAGCAACCTC+GGG - chr8_4:53204026-53204045 None:intergenic 50.0%
CTTCCCTACAGAAGCAACCT+CGG - chr8_4:53204027-53204046 None:intergenic 50.0%
TGCTTCTGTAGGGAAGACAG+AGG + chr8_4:53204031-53204050 Msa1333160:CDS 50.0%
GAAGACAGAGGAGCAGGTTA+AGG + chr8_4:53204043-53204062 Msa1333160:CDS 50.0%
GAGGAGCAGGTTAAGGAAAC+TGG + chr8_4:53204050-53204069 Msa1333160:CDS 50.0%
TCCCTTTCATGGCCAATAGC+AGG + chr8_4:53204096-53204115 Msa1333160:CDS 50.0%
CCCTGCTATTGGCCATGAAA+GGG - chr8_4:53204100-53204119 None:intergenic 50.0%
CCCTTTCATGGCCAATAGCA+GGG + chr8_4:53204097-53204116 Msa1333160:CDS 50.0%
AATTGCCTTCGCCCTGCTAT+TGG - chr8_4:53204111-53204130 None:intergenic 50.0%
GGCTGTTAAAGAAGCCGCAA+TGG + chr8_4:53204310-53204329 Msa1333160:CDS 50.0%
! CTATGGCGAACTTGGCTCGT+AGG + chr8_4:53201736-53201755 Msa1333160:CDS 55.0%
! GCGAACTTGGCTCGTAGGAA+GGG + chr8_4:53201741-53201760 Msa1333160:CDS 55.0%
CTCCGCCGATGAAAGAAGAG+CGG - chr8_4:53201769-53201788 None:intergenic 55.0%
AACGACGTCGTCATCATCGG+TGG + chr8_4:53201846-53201865 Msa1333160:CDS 55.0%
! GAAAAGCGTGGTGCTCTTGG+TGG + chr8_4:53201933-53201952 Msa1333160:CDS 55.0%
GGTGGTACCTGTCTCAACGT+TGG + chr8_4:53201951-53201970 Msa1333160:CDS 55.0%
! CGTTGGTTGCATCCCTTCCA+AGG + chr8_4:53201968-53201987 Msa1333160:CDS 55.0%
! GGCTAGAGATGGGCTCTGTA+TGG + chr8_4:53203514-53203533 Msa1333160:CDS 55.0%
GGCTCTGTATGGGGACGAAT+TGG + chr8_4:53203525-53203544 Msa1333160:CDS 55.0%
!! ATGGGGACGAATTGGCTCTG+AGG + chr8_4:53203533-53203552 Msa1333160:CDS 55.0%
ACTGTTGAACCAGCAGCTGG+TGG + chr8_4:53203708-53203727 Msa1333160:CDS 55.0%
CGGTCCAATGTTGGCACACA+AGG + chr8_4:53203908-53203927 Msa1333160:CDS 55.0%
AGCTGGTAAGGTTGGGCATG+TGG + chr8_4:53203965-53203984 Msa1333160:CDS 55.0%
AACCCCGAGGTTGCTTCTGT+AGG + chr8_4:53204020-53204039 Msa1333160:CDS 55.0%
ACCCCGAGGTTGCTTCTGTA+GGG + chr8_4:53204021-53204040 Msa1333160:CDS 55.0%
TCCCTACAGAAGCAACCTCG+GGG - chr8_4:53204025-53204044 None:intergenic 55.0%
TGTAGGGAAGACAGAGGAGC+AGG + chr8_4:53204037-53204056 Msa1333160:CDS 55.0%
GCCCTGCTATTGGCCATGAA+AGG - chr8_4:53204101-53204120 None:intergenic 55.0%
! GGCGAACTTGGCTCGTAGGA+AGG + chr8_4:53201740-53201759 Msa1333160:CDS 60.0%
GACGTCGTCATCATCGGTGG+TGG + chr8_4:53201849-53201868 Msa1333160:CDS 60.0%
! GTCATCATCGGTGGTGGTCC+CGG + chr8_4:53201855-53201874 Msa1333160:CDS 60.0%
GTCTGTTCACCACCAGCTGC+TGG - chr8_4:53203720-53203739 None:intergenic 60.0%
CATGGCCAATAGCAGGGCGA+AGG + chr8_4:53204103-53204122 Msa1333160:CDS 60.0%
! ATCATCGGTGGTGGTCCCGG+CGG + chr8_4:53201858-53201877 Msa1333160:CDS 65.0%
AATGGCGGCGACGTAACCGC+CGG - chr8_4:53201877-53201896 None:intergenic 65.0%
ATGGCGGCGACGTAACCGCC+GGG - chr8_4:53201876-53201895 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 53201463 53204737 53201463 ID=Msa1333160;Name=Msa1333160
chr8_4 mRNA 53201463 53204737 53201463 ID=Msa1333160-mRNA-1;Parent=Msa1333160;Name=Msa1333160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=269|1|1|1|1|1|2|376|502
chr8_4 exon 53201463 53201989 53201463 ID=Msa1333160-mRNA-1:exon:16230;Parent=Msa1333160-mRNA-1
chr8_4 exon 53203111 53204737 53203111 ID=Msa1333160-mRNA-1:exon:16231;Parent=Msa1333160-mRNA-1
chr8_4 five_prime_UTR 53201463 53201731 53201463 ID=Msa1333160-mRNA-1:five_prime_utr;Parent=Msa1333160-mRNA-1
chr8_4 CDS 53201732 53201989 53201732 ID=Msa1333160-mRNA-1:cds;Parent=Msa1333160-mRNA-1
chr8_4 CDS 53203111 53204361 53203111 ID=Msa1333160-mRNA-1:cds;Parent=Msa1333160-mRNA-1
chr8_4 three_prime_UTR 53204362 53204737 53204362 ID=Msa1333160-mRNA-1:three_prime_utr;Parent=Msa1333160-mRNA-1
Gene Sequence

>Msa1333160

ATGGCTATGGCGAACTTGGCTCGTAGGAAGGGTTCCGCTCTTCTTTCATCGGCGGAGACTCTCCGTTACACTTTCTCTCTAAGGTCAAGAGGTTTCGCTTCCGGATCTGATGAAAACGACGTCGTCATCATCGGTGGTGGTCCCGGCGGTTACGTCGCCGCCATTAAAGCTGCTCAGCTTGGTTTCAAAACCACTTGCATCGAAAAGCGTGGTGCTCTTGGTGGTACCTGTCTCAACGTTGGTTGCATCCCTTCCAAGGCGCTTTTGCATTCTTCCCACATGTACCATGAGGCTAAACATTCATTTGCCAACCATGGGGTCAAAGTTTCAAATGTGGAGATTGACTTAGCTGCCATGATGGCGCAAAAAGACAAAGCTGTTTCTAATCTGACCCGGGGTATTGAAGGCCTATTTAAGAAAAACAAGGTAACATATGTCAAAGGATACGGAAAATTCCTTTCACCATCTGAGGTCTCTGTAGACACCGTTGAAGGTGAAAATACTGTTGTGAAAGGAAAGCATATCATTATAGCCACCGGTTCAGATGTAAAATCTCTACCTGGCGTCACTATTGATGAAAAGAAAATTGTATCATCAACAGGGGCTCTCGCATTGACTGAAATCCCCAAGAAGCTTGTAGTTATCGGGGCAGGTTACATTGGGCTAGAGATGGGCTCTGTATGGGGACGAATTGGCTCTGAGGTAACTGTTGTTGAGTTTGCATCGCAGATTGTTCCATCCATGGATGGAGAAATCCGGAAGCAGTTTCAGCGTTCTCTTGAAAAGCAAGGCATGAAATTCAAGCTGAATACCAAGGTGGTTGGAGTTGATACTTCTGGGGATGGTGTGAAGCTAACTGTTGAACCAGCAGCTGGTGGTGAACAGACCATAATTGAAGCAGATGTTGTCCTTGTATCTGCTGGTAGGACTCCATTCACTTCTGGACTTAATTTGGACAAGATAGGAGTTGAAACTGACAAGGTAGGACGCATTTTGGTAAATGAAAGGTTTTCCACAAATGTCTCGGGTGTCTATGCAATTGGTGATGTAATTCCCGGTCCAATGTTGGCACACAAGGCAGAAGAAGATGGAGTTGCTTGTGTTGAGTACTTAGCTGGTAAGGTTGGGCATGTGGACTATGACAAAGTACCAGGTGTTGTCTATACAAACCCCGAGGTTGCTTCTGTAGGGAAGACAGAGGAGCAGGTTAAGGAAACTGGAGTTCAATACCGTGTTGGGAAGTTCCCTTTCATGGCCAATAGCAGGGCGAAGGCAATTGATAACGCTGAAGGACTTGTCAAGATAATTGCTGAAAAGGAGACGGACAAAATATTGGGGGTGCATATTATGGCACCCAATGCAGGAGAACTCATTCATGAAGCAGCCATTGCATTGCAGTATGATGCATCAAGTGAGGACATAGCACGTGTTTGTCATGCACATCCAACAATGAGTGAGGCTGTTAAAGAAGCCGCAATGGCCACTTATGACAAGCCAATTCACATTTGA
Protein sequence

>Msa1333160

MAMANLARRKGSALLSSAETLRYTFSLRSRGFASGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFLSPSEVSVDTVEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALTEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASQIVPSMDGEIRKQFQRSLEKQGMKFKLNTKVVGVDTSGDGVKLTVEPAAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKVGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVQYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAVKEAAMATYDKPIHI*