AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1338130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338130 MtrunA17_Chr8g0348021 97.093 344 10 0 3 346 680 1023 0.0 707
Msa1338130 MtrunA17_Chr1g0197621 50.909 330 154 5 4 326 709 1037 1.80e-106 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338130 AT4G01210.1 70.845 343 97 3 6 346 687 1028 1.63e-168 496
Msa1338130 AT5G04480.1 50.453 331 156 5 3 326 720 1049 7.08e-107 336
Msa1338130 AT5G04480.2 50.606 330 155 5 4 326 706 1034 8.23e-107 335

Find 103 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAACCTCCTGCATTAA+TGG 0.111874 tig0001664:+20880 None:intergenic
TGTGCAATATATTCCATATT+TGG 0.157335 tig0001664:-19173 Msa1338130:three_prime_UTR
ACGGGGATACATTATATTTC+TGG 0.193517 tig0001664:-20964 Msa1338130:CDS
CGAGATGTACTAGGTGAATT+TGG 0.213222 tig0001664:-21256 Msa1338130:CDS
TCCTGCATTACACCGGTTTC+CGG 0.219473 tig0001664:+19802 None:intergenic
TGGCCACAACCAGTGTTTAT+TGG 0.251752 tig0001664:+19669 None:intergenic
AGCTCCCTCTAATCCAAATA+TGG 0.299700 tig0001664:+19160 None:intergenic
ATGAGAGGGAGAGAAGTTTA+AGG 0.304691 tig0001664:-19615 Msa1338130:CDS
GGCCACAACCAGTGTTTATT+GGG 0.317679 tig0001664:+19670 None:intergenic
TGTGAAGCCTCCACCAGATT+TGG 0.322661 tig0001664:-19503 Msa1338130:CDS
TTAGAGCTTTCTTCCAAATC+TGG 0.324471 tig0001664:+19490 None:intergenic
TCCCAAAAGAATAAAATTAC+AGG 0.341637 tig0001664:+19275 None:intergenic
TTGCCTCCCATGCCCGTAGA+TGG 0.352250 tig0001664:-20701 Msa1338130:CDS
CCTGCATTACACCGGTTTCC+GGG 0.357619 tig0001664:+19803 None:intergenic
ATATTCCATATTTGGATTAG+AGG 0.365479 tig0001664:-19165 None:intergenic
CTTGGATTGGATTTCAGTCT+TGG 0.367794 tig0001664:-21186 Msa1338130:CDS
ACCCTTCACAGAAAGACTTT+TGG 0.372816 tig0001664:-20916 Msa1338130:CDS
ATGGTTAGGTTCTTTATTCT+AGG 0.381140 tig0001664:-19253 Msa1338130:three_prime_UTR
CGACATCGACAACAAGTAAT+CGG 0.395243 tig0001664:-19532 Msa1338130:CDS
AGGTTCTTTATTCTAGGAAA+TGG 0.399050 tig0001664:-19247 Msa1338130:three_prime_UTR
ATTATTCAAAGCAGAAGTTC+CGG 0.401791 tig0001664:-19434 Msa1338130:three_prime_UTR
CCGCCTTTGCCATTGCAAAC+AGG 0.409018 tig0001664:-21231 Msa1338130:CDS
CATGGTCTGTCATGCTGAGT+TGG 0.417197 tig0001664:-20673 Msa1338130:CDS
CACTGGTTGTGGCCATCAAC+CGG 0.420363 tig0001664:-19661 Msa1338130:CDS
ATGGTCTGTCATGCTGAGTT+GGG 0.438199 tig0001664:-20672 Msa1338130:CDS
CGGGGATACATTATATTTCT+GGG 0.442919 tig0001664:-20963 Msa1338130:CDS
TCTGGCAAAGGTCGAAGGCC+AGG 0.449196 tig0001664:-21334 Msa1338130:CDS
TAGAGTTTGTGATGTTCTCC+AGG 0.452937 tig0001664:-20628 Msa1338130:intron
GAGGTAAAATGTGGATCAAA+TGG 0.454661 tig0001664:-19756 Msa1338130:CDS
GAGGAGAATGTATGGGGTAC+AGG 0.465906 tig0001664:-20738 Msa1338130:CDS
TTTATTCTAGGAAATGGTGT+GGG 0.469299 tig0001664:-19241 Msa1338130:three_prime_UTR
CTTTCTTCCAAATCTGGTGG+AGG 0.475659 tig0001664:+19496 None:intergenic
GTATTTGTGAACCCGGAAAC+CGG 0.478011 tig0001664:-19814 Msa1338130:CDS
GAAGCGATGAGGAGAATGTA+TGG 0.479125 tig0001664:-20746 Msa1338130:CDS
TATTCCATATTTGGATTAGA+GGG 0.479533 tig0001664:-19164 None:intergenic
AGACCATGTGTCACCATCTA+CGG 0.483630 tig0001664:+20688 None:intergenic
ACCAAAAGTCTTTCTGTGAA+GGG 0.484824 tig0001664:+20915 None:intergenic
TTGAGCTTCTTGTAAACGTG+TGG 0.491219 tig0001664:-19861 Msa1338130:CDS
TTATTCTAGGAAATGGTGTG+GGG 0.492632 tig0001664:-19240 Msa1338130:three_prime_UTR
GACCAAAAGTCTTTCTGTGA+AGG 0.494411 tig0001664:+20914 None:intergenic
GCTTATTATCGAGATGTACT+AGG 0.497421 tig0001664:-21265 Msa1338130:CDS
CCCGGAAACCGGTGTAATGC+AGG 0.500427 tig0001664:-19803 Msa1338130:CDS
TCTTTCTGTGAAGGGTTTCG+CGG 0.504740 tig0001664:+20923 None:intergenic
ATTATATTTCTGGGTGCGGA+TGG 0.509950 tig0001664:-20954 Msa1338130:CDS
ATTCTAGGAAATGGTGTGGG+GGG 0.516735 tig0001664:-19238 Msa1338130:three_prime_UTR
CTTTATTCTAGGAAATGGTG+TGG 0.524244 tig0001664:-19242 Msa1338130:three_prime_UTR
GTATTCACATGTTCACAGTC+TGG 0.530222 tig0001664:-21352 Msa1338130:CDS
CATCCTCCTTGCGCTGTGGT+AGG 0.531118 tig0001664:+19837 None:intergenic
TTTCTGGGTGCGGATGGATA+CGG 0.531157 tig0001664:-20948 Msa1338130:CDS
ATACATTATATTTCTGGGTG+CGG 0.533401 tig0001664:-20958 Msa1338130:CDS
GACCATGTGTCACCATCTAC+GGG 0.533729 tig0001664:+20689 None:intergenic
TTGGAGAGCAACAGCAAGGA+AGG 0.534391 tig0001664:-21167 Msa1338130:intron
CAGAATGTTTGTAGATGCAC+TGG 0.535442 tig0001664:-20482 Msa1338130:CDS
AGCTGAGTTATCAGATTCTG+AGG 0.535762 tig0001664:-19695 Msa1338130:CDS
ATCCCAATAAACACTGGTTG+TGG 0.537370 tig0001664:-19672 Msa1338130:CDS
GACATCGACAACAAGTAATC+GGG 0.538295 tig0001664:-19531 Msa1338130:CDS
CTGTCCTTTGAGTTTGTCGA+AGG 0.542286 tig0001664:-20422 Msa1338130:intron
GAGCTTTCTTCCAAATCTGG+TGG 0.543362 tig0001664:+19493 None:intergenic
TGTGTCACCATCTACGGGCA+TGG 0.544387 tig0001664:+20694 None:intergenic
TTTGGCAAGGTTTATATGAG+AGG 0.546690 tig0001664:-19630 Msa1338130:CDS
TTGGCAAGGTTTATATGAGA+GGG 0.550339 tig0001664:-19629 Msa1338130:CDS
TGAGCTTCTTGTAAACGTGT+GGG 0.551828 tig0001664:-19860 Msa1338130:CDS
TAATAAGCATTGTTAAGCAA+TGG 0.553372 tig0001664:+21280 None:intergenic
CCCAAAAGAATAAAATTACA+GGG 0.558219 tig0001664:+19276 None:intergenic
CAAACTCAAAGGACAGTGTC+CGG 0.559268 tig0001664:+20429 None:intergenic
GGGCATGGGAGGCAAAGAAT+CGG 0.567837 tig0001664:+20709 None:intergenic
TGCGATTCCATTAATGCAGG+AGG 0.570143 tig0001664:-20887 Msa1338130:CDS
CACAGTCTGGCAAAGGTCGA+AGG 0.570214 tig0001664:-21339 Msa1338130:CDS
GTGTCACCATCTACGGGCAT+GGG 0.571564 tig0001664:+20695 None:intergenic
CTGGCAAAGGTCGAAGGCCA+GGG 0.572173 tig0001664:-21333 Msa1338130:CDS
AAGCGATGAGGAGAATGTAT+GGG 0.573370 tig0001664:-20745 Msa1338130:CDS
CCTGTTTGCAATGGCAAAGG+CGG 0.573462 tig0001664:+21231 None:intergenic
AGGACAAGCACTGCTACTCA+AGG 0.574453 tig0001664:-19888 Msa1338130:CDS
CCTCATCGCTTCTGAGAAAG+CGG 0.578187 tig0001664:+20757 None:intergenic
CTACCACAGCGCAAGGAGGA+TGG 0.579052 tig0001664:-19836 Msa1338130:CDS
TATTCTAGGAAATGGTGTGG+GGG 0.586016 tig0001664:-19239 Msa1338130:three_prime_UTR
TGTGGGCCTACCACAGCGCA+AGG 0.590873 tig0001664:-19843 Msa1338130:CDS
GCATCAAAATCATCTCTCCC+TGG 0.592807 tig0001664:+21316 None:intergenic
CACAAGTTCAAGAGCCGTAG+AGG 0.593174 tig0001664:-19775 Msa1338130:CDS
GTGTTGTTCCTGCATTACAC+CGG 0.593994 tig0001664:+19795 None:intergenic
ACGATCAATCCTGTTTGCAA+TGG 0.595857 tig0001664:+21222 None:intergenic
TCACCATCTACGGGCATGGG+AGG 0.602080 tig0001664:+20698 None:intergenic
ACATGTTCACAGTCTGGCAA+AGG 0.602310 tig0001664:-21346 Msa1338130:CDS
TTACAACACACTGAAGAACA+TGG 0.603274 tig0001664:-19728 Msa1338130:CDS
AATCCTGTTTGCAATGGCAA+AGG 0.604520 tig0001664:+21228 None:intergenic
GGAGAGAAGTTTAAGGCACA+AGG 0.605935 tig0001664:-19608 Msa1338130:CDS
GGCACAAGGAGAAAGAAAAG+AGG 0.606007 tig0001664:-19594 Msa1338130:CDS
TTAAGCAATGGAAGACGAGA+AGG 0.609691 tig0001664:+21292 None:intergenic
GTCACCTTCGACAAACTCAA+AGG 0.616958 tig0001664:+20418 None:intergenic
AGTCTTGGAGAGCAACAGCA+AGG 0.617660 tig0001664:-21171 Msa1338130:CDS
CACACTGAAGAACATGGATG+AGG 0.619414 tig0001664:-19722 Msa1338130:CDS
GAGGATGGTATTTGTGAACC+CGG 0.621629 tig0001664:-19821 Msa1338130:CDS
CTGAGGATCCCAATAAACAC+TGG 0.623324 tig0001664:-19678 Msa1338130:CDS
TATGATGAACATCATTCCAC+CGG 0.630963 tig0001664:-20448 Msa1338130:CDS
GGACAAGCACTGCTACTCAA+GGG 0.633281 tig0001664:-19887 Msa1338130:CDS
TGCCCGTAGATGGTGACACA+TGG 0.646414 tig0001664:-20691 Msa1338130:CDS
CCGCTTTCTCAGAAGCGATG+AGG 0.650880 tig0001664:-20757 Msa1338130:CDS
AGAGCCGTAGAGGTAAAATG+TGG 0.658391 tig0001664:-19765 Msa1338130:CDS
ATACCATCCTCCTTGCGCTG+TGG 0.665035 tig0001664:+19833 None:intergenic
AGCGATGAGGAGAATGTATG+GGG 0.668638 tig0001664:-20744 Msa1338130:CDS
ACTCAAAGGACAGTGTCCGG+TGG 0.677184 tig0001664:+20432 None:intergenic
CCAAAAGAATAAAATTACAG+GGG 0.687060 tig0001664:+19277 None:intergenic
GGGCCTACCACAGCGCAAGG+AGG 0.724672 tig0001664:-19840 Msa1338130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTATGTTTTCTTTA+TGG + tig0001664:20368-20387 None:intergenic 10.0%
!!! TATTATTTATGTTTTCTTTA+TGG + tig0001664:20368-20387 None:intergenic 10.0%
!!! ACAAATATTTTAGTTTTCTA+TGG - tig0001664:20217-20236 Msa1338130:intron 15.0%
!! AAGATATCTACTTTAAATTA+CGG - tig0001664:20277-20296 Msa1338130:intron 15.0%
!! TTAATTAATGTCTTAGTTAA+TGG - tig0001664:20446-20465 Msa1338130:CDS 15.0%
!! TAGAAAAATTAAATAGAATG+AGG - tig0001664:20957-20976 Msa1338130:CDS 15.0%
!! AGAAAAAAAGAATTTATATC+CGG + tig0001664:21103-21122 None:intergenic 15.0%
!!! ACAAATATTTTAGTTTTCTA+TGG - tig0001664:20217-20236 Msa1338130:intron 15.0%
!! AAGATATCTACTTTAAATTA+CGG - tig0001664:20277-20296 Msa1338130:intron 15.0%
!! TTAATTAATGTCTTAGTTAA+TGG - tig0001664:20446-20465 Msa1338130:CDS 15.0%
!! TAGAAAAATTAAATAGAATG+AGG - tig0001664:20957-20976 Msa1338130:CDS 15.0%
!! AGAAAAAAAGAATTTATATC+CGG + tig0001664:21103-21122 None:intergenic 15.0%
!!! ATTTGTCTTCATACAATTTT+CGG - tig0001664:19377-19396 Msa1338130:three_prime_UTR 20.0%
!! CAAAAAAAAAAACAAGAATG+AGG + tig0001664:19445-19464 None:intergenic 20.0%
!!! CTCATTCTTGTTTTTTTTTT+TGG - tig0001664:19443-19462 Msa1338130:three_prime_UTR 20.0%
!! TTTCATATATTTGGATAAAG+TGG + tig0001664:20602-20621 None:intergenic 20.0%
!!! ATTTGTCTTCATACAATTTT+CGG - tig0001664:19377-19396 Msa1338130:three_prime_UTR 20.0%
!! CAAAAAAAAAAACAAGAATG+AGG + tig0001664:19445-19464 None:intergenic 20.0%
!!! CTCATTCTTGTTTTTTTTTT+TGG - tig0001664:19443-19462 Msa1338130:three_prime_UTR 20.0%
!! TTTCATATATTTGGATAAAG+TGG + tig0001664:20602-20621 None:intergenic 20.0%
!! TAATAAGCATTGTTAAGCAA+TGG + tig0001664:19238-19257 None:intergenic 25.0%
!!! AACACATATAATGGGTTTAA+AGG + tig0001664:19667-19686 None:intergenic 25.0%
!! AACTCTAAAAATGATCTTGT+GGG + tig0001664:19874-19893 None:intergenic 25.0%
!! AAACTCTAAAAATGATCTTG+TGG + tig0001664:19875-19894 None:intergenic 25.0%
! AAGAAATCCATTAATGAAAC+CGG + tig0001664:19920-19939 None:intergenic 25.0%
!!! CATTAATGGATTTCTTTCAT+TGG - tig0001664:19924-19943 Msa1338130:intron 25.0%
!! ATTTGTTTCCTTTGTTTGTT+TGG - tig0001664:20135-20154 Msa1338130:intron 25.0%
! ATTAAACCATGAGGATAAAA+TGG + tig0001664:20167-20186 None:intergenic 25.0%
! ATATGAAAGATTAAACCATG+AGG + tig0001664:20176-20195 None:intergenic 25.0%
! TCCAAATATATGAAAATTGC+AGG - tig0001664:20607-20626 Msa1338130:intron 25.0%
!! TCCTGCAATTTTCATATATT+TGG + tig0001664:20611-20630 None:intergenic 25.0%
!! ATTGTGATTTTCATTCAGTA+AGG - tig0001664:21148-21167 Msa1338130:intron 25.0%
! CCAAAAGAATAAAATTACAG+GGG + tig0001664:21241-21260 None:intergenic 25.0%
! CCCAAAAGAATAAAATTACA+GGG + tig0001664:21242-21261 None:intergenic 25.0%
!! CCCTGTAATTTTATTCTTTT+GGG - tig0001664:21239-21258 Msa1338130:CDS 25.0%
! TCCCAAAAGAATAAAATTAC+AGG + tig0001664:21243-21262 None:intergenic 25.0%
!!! GTAATTTTATTCTTTTGGGA+TGG - tig0001664:21243-21262 Msa1338130:CDS 25.0%
! TGTGCAATATATTCCATATT+TGG - tig0001664:21342-21361 Msa1338130:CDS 25.0%
!! TAATAAGCATTGTTAAGCAA+TGG + tig0001664:19238-19257 None:intergenic 25.0%
!!! AACACATATAATGGGTTTAA+AGG + tig0001664:19667-19686 None:intergenic 25.0%
!! AACTCTAAAAATGATCTTGT+GGG + tig0001664:19874-19893 None:intergenic 25.0%
!! AAACTCTAAAAATGATCTTG+TGG + tig0001664:19875-19894 None:intergenic 25.0%
! AAGAAATCCATTAATGAAAC+CGG + tig0001664:19920-19939 None:intergenic 25.0%
!!! CATTAATGGATTTCTTTCAT+TGG - tig0001664:19924-19943 Msa1338130:intron 25.0%
!! ATTTGTTTCCTTTGTTTGTT+TGG - tig0001664:20135-20154 Msa1338130:intron 25.0%
! ATTAAACCATGAGGATAAAA+TGG + tig0001664:20167-20186 None:intergenic 25.0%
! ATATGAAAGATTAAACCATG+AGG + tig0001664:20176-20195 None:intergenic 25.0%
! TCCAAATATATGAAAATTGC+AGG - tig0001664:20607-20626 Msa1338130:intron 25.0%
!! TCCTGCAATTTTCATATATT+TGG + tig0001664:20611-20630 None:intergenic 25.0%
!! ATTGTGATTTTCATTCAGTA+AGG - tig0001664:21148-21167 Msa1338130:intron 25.0%
! CCAAAAGAATAAAATTACAG+GGG + tig0001664:21241-21260 None:intergenic 25.0%
! CCCAAAAGAATAAAATTACA+GGG + tig0001664:21242-21261 None:intergenic 25.0%
!! CCCTGTAATTTTATTCTTTT+GGG - tig0001664:21239-21258 Msa1338130:CDS 25.0%
! TCCCAAAAGAATAAAATTAC+AGG + tig0001664:21243-21262 None:intergenic 25.0%
!!! GTAATTTTATTCTTTTGGGA+TGG - tig0001664:21243-21262 Msa1338130:CDS 25.0%
! TGTGCAATATATTCCATATT+TGG - tig0001664:21342-21361 Msa1338130:CDS 25.0%
ATCGTTTACACAAAAATGCT+TGG - tig0001664:19311-19330 Msa1338130:three_prime_UTR 30.0%
TTACACAAAAATGCTTGGAT+TGG - tig0001664:19316-19335 Msa1338130:three_prime_UTR 30.0%
!! ATACATTATATTTCTGGGTG+CGG - tig0001664:19557-19576 Msa1338130:CDS 30.0%
TCGTGAGAAACACATATAAT+GGG + tig0001664:19675-19694 None:intergenic 30.0%
AGAAATCCATTAATGAAACC+GGG + tig0001664:19919-19938 None:intergenic 30.0%
!! TTCCTTTGTTTGTTTGGTTT+TGG - tig0001664:20141-20160 Msa1338130:intron 30.0%
AGATATCTTCGACAAACTAT+TGG + tig0001664:20266-20285 None:intergenic 30.0%
GGTGCAAGTAAAATAATCAA+TGG - tig0001664:20423-20442 Msa1338130:CDS 30.0%
CAACTTTACTGTCAAGAATA+GGG + tig0001664:20489-20508 None:intergenic 30.0%
ACAACTTTACTGTCAAGAAT+AGG + tig0001664:20490-20509 None:intergenic 30.0%
ATTATTCAAAGCAGAAGTTC+CGG - tig0001664:21081-21100 Msa1338130:intron 30.0%
! CCCCTGTAATTTTATTCTTT+TGG - tig0001664:21238-21257 Msa1338130:CDS 30.0%
!!! TTTATTCTTTTGGGATGGTT+AGG - tig0001664:21248-21267 Msa1338130:CDS 30.0%
ATGGTTAGGTTCTTTATTCT+AGG - tig0001664:21262-21281 Msa1338130:CDS 30.0%
! AGGTTCTTTATTCTAGGAAA+TGG - tig0001664:21268-21287 Msa1338130:CDS 30.0%
! TTTATTCTAGGAAATGGTGT+GGG - tig0001664:21274-21293 Msa1338130:CDS 30.0%
ATCGTTTACACAAAAATGCT+TGG - tig0001664:19311-19330 Msa1338130:three_prime_UTR 30.0%
TTACACAAAAATGCTTGGAT+TGG - tig0001664:19316-19335 Msa1338130:three_prime_UTR 30.0%
!! ATACATTATATTTCTGGGTG+CGG - tig0001664:19557-19576 Msa1338130:CDS 30.0%
TCGTGAGAAACACATATAAT+GGG + tig0001664:19675-19694 None:intergenic 30.0%
AGAAATCCATTAATGAAACC+GGG + tig0001664:19919-19938 None:intergenic 30.0%
!! TTCCTTTGTTTGTTTGGTTT+TGG - tig0001664:20141-20160 Msa1338130:intron 30.0%
AGATATCTTCGACAAACTAT+TGG + tig0001664:20266-20285 None:intergenic 30.0%
GGTGCAAGTAAAATAATCAA+TGG - tig0001664:20423-20442 Msa1338130:CDS 30.0%
CAACTTTACTGTCAAGAATA+GGG + tig0001664:20489-20508 None:intergenic 30.0%
ACAACTTTACTGTCAAGAAT+AGG + tig0001664:20490-20509 None:intergenic 30.0%
ATTATTCAAAGCAGAAGTTC+CGG - tig0001664:21081-21100 Msa1338130:intron 30.0%
! CCCCTGTAATTTTATTCTTT+TGG - tig0001664:21238-21257 Msa1338130:CDS 30.0%
!!! TTTATTCTTTTGGGATGGTT+AGG - tig0001664:21248-21267 Msa1338130:CDS 30.0%
ATGGTTAGGTTCTTTATTCT+AGG - tig0001664:21262-21281 Msa1338130:CDS 30.0%
! AGGTTCTTTATTCTAGGAAA+TGG - tig0001664:21268-21287 Msa1338130:CDS 30.0%
! TTTATTCTAGGAAATGGTGT+GGG - tig0001664:21274-21293 Msa1338130:CDS 30.0%
GCTTATTATCGAGATGTACT+AGG - tig0001664:19250-19269 Msa1338130:three_prime_UTR 35.0%
! TAATGTATCCCCGTTCTTTT+TGG + tig0001664:19545-19564 None:intergenic 35.0%
ACGGGGATACATTATATTTC+TGG - tig0001664:19551-19570 Msa1338130:CDS 35.0%
CGGGGATACATTATATTTCT+GGG - tig0001664:19552-19571 Msa1338130:CDS 35.0%
ACCAAAAGTCTTTCTGTGAA+GGG + tig0001664:19603-19622 None:intergenic 35.0%
! TTTTGCGATTCCATTAATGC+AGG - tig0001664:19625-19644 Msa1338130:CDS 35.0%
CTCGTGAGAAACACATATAA+TGG + tig0001664:19676-19695 None:intergenic 35.0%
ATGTGTTTCTCACGAGTATA+TGG - tig0001664:19680-19699 Msa1338130:CDS 35.0%
TATGATGAACATCATTCCAC+CGG - tig0001664:20067-20086 Msa1338130:intron 35.0%
!! TTTTGGCCATTTTATCCTCA+TGG - tig0001664:20158-20177 Msa1338130:intron 35.0%
TGAATTAGGCACAGAAAAGA+TGG + tig0001664:20333-20352 None:intergenic 35.0%
! CTTTTCTGTGCCTAATTCAA+TGG - tig0001664:20334-20353 Msa1338130:intron 35.0%
! TGATCCACATTTTACCTCTA+CGG + tig0001664:20757-20776 None:intergenic 35.0%
GAGGTAAAATGTGGATCAAA+TGG - tig0001664:20759-20778 Msa1338130:CDS 35.0%
TTACAACACACTGAAGAACA+TGG - tig0001664:20787-20806 Msa1338130:intron 35.0%
TTTGGCAAGGTTTATATGAG+AGG - tig0001664:20885-20904 Msa1338130:CDS 35.0%
TTGGCAAGGTTTATATGAGA+GGG - tig0001664:20886-20905 Msa1338130:CDS 35.0%
TTAGAGCTTTCTTCCAAATC+TGG + tig0001664:21028-21047 None:intergenic 35.0%
! CTTTATTCTAGGAAATGGTG+TGG - tig0001664:21273-21292 Msa1338130:CDS 35.0%
! TTATTCTAGGAAATGGTGTG+GGG - tig0001664:21275-21294 Msa1338130:CDS 35.0%
GCTTATTATCGAGATGTACT+AGG - tig0001664:19250-19269 Msa1338130:three_prime_UTR 35.0%
! TAATGTATCCCCGTTCTTTT+TGG + tig0001664:19545-19564 None:intergenic 35.0%
ACGGGGATACATTATATTTC+TGG - tig0001664:19551-19570 Msa1338130:CDS 35.0%
CGGGGATACATTATATTTCT+GGG - tig0001664:19552-19571 Msa1338130:CDS 35.0%
ACCAAAAGTCTTTCTGTGAA+GGG + tig0001664:19603-19622 None:intergenic 35.0%
! TTTTGCGATTCCATTAATGC+AGG - tig0001664:19625-19644 Msa1338130:CDS 35.0%
CTCGTGAGAAACACATATAA+TGG + tig0001664:19676-19695 None:intergenic 35.0%
ATGTGTTTCTCACGAGTATA+TGG - tig0001664:19680-19699 Msa1338130:CDS 35.0%
TATGATGAACATCATTCCAC+CGG - tig0001664:20067-20086 Msa1338130:intron 35.0%
!! TTTTGGCCATTTTATCCTCA+TGG - tig0001664:20158-20177 Msa1338130:intron 35.0%
TGAATTAGGCACAGAAAAGA+TGG + tig0001664:20333-20352 None:intergenic 35.0%
! CTTTTCTGTGCCTAATTCAA+TGG - tig0001664:20334-20353 Msa1338130:intron 35.0%
! TGATCCACATTTTACCTCTA+CGG + tig0001664:20757-20776 None:intergenic 35.0%
GAGGTAAAATGTGGATCAAA+TGG - tig0001664:20759-20778 Msa1338130:CDS 35.0%
TTACAACACACTGAAGAACA+TGG - tig0001664:20787-20806 Msa1338130:intron 35.0%
TTTGGCAAGGTTTATATGAG+AGG - tig0001664:20885-20904 Msa1338130:CDS 35.0%
TTGGCAAGGTTTATATGAGA+GGG - tig0001664:20886-20905 Msa1338130:CDS 35.0%
TTAGAGCTTTCTTCCAAATC+TGG + tig0001664:21028-21047 None:intergenic 35.0%
! CTTTATTCTAGGAAATGGTG+TGG - tig0001664:21273-21292 Msa1338130:CDS 35.0%
! TTATTCTAGGAAATGGTGTG+GGG - tig0001664:21275-21294 Msa1338130:CDS 35.0%
TTAAGCAATGGAAGACGAGA+AGG + tig0001664:19226-19245 None:intergenic 40.0%
CGAGATGTACTAGGTGAATT+TGG - tig0001664:19259-19278 Msa1338130:three_prime_UTR 40.0%
AATCCTGTTTGCAATGGCAA+AGG + tig0001664:19290-19309 None:intergenic 40.0%
ACGATCAATCCTGTTTGCAA+TGG + tig0001664:19296-19315 None:intergenic 40.0%
! CTTGGATTGGATTTCAGTCT+TGG - tig0001664:19329-19348 Msa1338130:three_prime_UTR 40.0%
!!! TTTTTGGTTGACGTTTTGCG+TGG - tig0001664:19459-19478 Msa1338130:exon 40.0%
!! TTTTGGTTGACGTTTTGCGT+GGG - tig0001664:19460-19479 Msa1338130:exon 40.0%
! TAATGCATTTTCAGCAGCTC+TGG + tig0001664:19506-19525 None:intergenic 40.0%
GCTGTCCAATCCAAAAAGAA+CGG - tig0001664:19532-19551 Msa1338130:CDS 40.0%
CTGTCCAATCCAAAAAGAAC+GGG - tig0001664:19533-19552 Msa1338130:CDS 40.0%
TGTCCAATCCAAAAAGAACG+GGG - tig0001664:19534-19553 Msa1338130:CDS 40.0%
! TATCCCCGTTCTTTTTGGAT+TGG + tig0001664:19540-19559 None:intergenic 40.0%
!! ATTATATTTCTGGGTGCGGA+TGG - tig0001664:19561-19580 Msa1338130:CDS 40.0%
! ACCCTTCACAGAAAGACTTT+TGG - tig0001664:19599-19618 Msa1338130:CDS 40.0%
GACCAAAAGTCTTTCTGTGA+AGG + tig0001664:19604-19623 None:intergenic 40.0%
AAGCGATGAGGAGAATGTAT+GGG - tig0001664:19770-19789 Msa1338130:CDS 40.0%
TAGAGTTTGTGATGTTCTCC+AGG - tig0001664:19887-19906 Msa1338130:CDS 40.0%
TACACACCCGGTTTCATTAA+TGG - tig0001664:19910-19929 Msa1338130:intron 40.0%
CAGAATGTTTGTAGATGCAC+TGG - tig0001664:20033-20052 Msa1338130:intron 40.0%
GGCCAAAACCAAACAAACAA+AGG + tig0001664:20146-20165 None:intergenic 40.0%
! TTGACCAGCTTTTACTTCGT+CGG - tig0001664:20402-20421 Msa1338130:intron 40.0%
TTGAGCTTCTTGTAAACGTG+TGG - tig0001664:20654-20673 Msa1338130:CDS 40.0%
TGAGCTTCTTGTAAACGTGT+GGG - tig0001664:20655-20674 Msa1338130:CDS 40.0%
AGCTGAGTTATCAGATTCTG+AGG - tig0001664:20820-20839 Msa1338130:intron 40.0%
! ATCCCAATAAACACTGGTTG+TGG - tig0001664:20843-20862 Msa1338130:intron 40.0%
! CAAAAAACTTCACCGGTTGA+TGG + tig0001664:20869-20888 None:intergenic 40.0%
!!! CATCAACCGGTGAAGTTTTT+TGG - tig0001664:20867-20886 Msa1338130:intron 40.0%
ACCTTGCCAAAAAACTTCAC+CGG + tig0001664:20876-20895 None:intergenic 40.0%
ATGAGAGGGAGAGAAGTTTA+AGG - tig0001664:20900-20919 Msa1338130:CDS 40.0%
CGACATCGACAACAAGTAAT+CGG - tig0001664:20983-21002 Msa1338130:CDS 40.0%
GACATCGACAACAAGTAATC+GGG - tig0001664:20984-21003 Msa1338130:CDS 40.0%
! TATTCTAGGAAATGGTGTGG+GGG - tig0001664:21276-21295 Msa1338130:CDS 40.0%
TTAAGCAATGGAAGACGAGA+AGG + tig0001664:19226-19245 None:intergenic 40.0%
CGAGATGTACTAGGTGAATT+TGG - tig0001664:19259-19278 Msa1338130:three_prime_UTR 40.0%
AATCCTGTTTGCAATGGCAA+AGG + tig0001664:19290-19309 None:intergenic 40.0%
ACGATCAATCCTGTTTGCAA+TGG + tig0001664:19296-19315 None:intergenic 40.0%
! CTTGGATTGGATTTCAGTCT+TGG - tig0001664:19329-19348 Msa1338130:three_prime_UTR 40.0%
!!! TTTTTGGTTGACGTTTTGCG+TGG - tig0001664:19459-19478 Msa1338130:exon 40.0%
!! TTTTGGTTGACGTTTTGCGT+GGG - tig0001664:19460-19479 Msa1338130:exon 40.0%
! TAATGCATTTTCAGCAGCTC+TGG + tig0001664:19506-19525 None:intergenic 40.0%
GCTGTCCAATCCAAAAAGAA+CGG - tig0001664:19532-19551 Msa1338130:CDS 40.0%
CTGTCCAATCCAAAAAGAAC+GGG - tig0001664:19533-19552 Msa1338130:CDS 40.0%
TGTCCAATCCAAAAAGAACG+GGG - tig0001664:19534-19553 Msa1338130:CDS 40.0%
! TATCCCCGTTCTTTTTGGAT+TGG + tig0001664:19540-19559 None:intergenic 40.0%
!! ATTATATTTCTGGGTGCGGA+TGG - tig0001664:19561-19580 Msa1338130:CDS 40.0%
! ACCCTTCACAGAAAGACTTT+TGG - tig0001664:19599-19618 Msa1338130:CDS 40.0%
GACCAAAAGTCTTTCTGTGA+AGG + tig0001664:19604-19623 None:intergenic 40.0%
AAGCGATGAGGAGAATGTAT+GGG - tig0001664:19770-19789 Msa1338130:CDS 40.0%
TAGAGTTTGTGATGTTCTCC+AGG - tig0001664:19887-19906 Msa1338130:CDS 40.0%
TACACACCCGGTTTCATTAA+TGG - tig0001664:19910-19929 Msa1338130:intron 40.0%
CAGAATGTTTGTAGATGCAC+TGG - tig0001664:20033-20052 Msa1338130:intron 40.0%
GGCCAAAACCAAACAAACAA+AGG + tig0001664:20146-20165 None:intergenic 40.0%
! TTGACCAGCTTTTACTTCGT+CGG - tig0001664:20402-20421 Msa1338130:intron 40.0%
TTGAGCTTCTTGTAAACGTG+TGG - tig0001664:20654-20673 Msa1338130:CDS 40.0%
TGAGCTTCTTGTAAACGTGT+GGG - tig0001664:20655-20674 Msa1338130:CDS 40.0%
AGCTGAGTTATCAGATTCTG+AGG - tig0001664:20820-20839 Msa1338130:intron 40.0%
! ATCCCAATAAACACTGGTTG+TGG - tig0001664:20843-20862 Msa1338130:intron 40.0%
! CAAAAAACTTCACCGGTTGA+TGG + tig0001664:20869-20888 None:intergenic 40.0%
!!! CATCAACCGGTGAAGTTTTT+TGG - tig0001664:20867-20886 Msa1338130:intron 40.0%
ACCTTGCCAAAAAACTTCAC+CGG + tig0001664:20876-20895 None:intergenic 40.0%
ATGAGAGGGAGAGAAGTTTA+AGG - tig0001664:20900-20919 Msa1338130:CDS 40.0%
CGACATCGACAACAAGTAAT+CGG - tig0001664:20983-21002 Msa1338130:CDS 40.0%
GACATCGACAACAAGTAATC+GGG - tig0001664:20984-21003 Msa1338130:CDS 40.0%
! TATTCTAGGAAATGGTGTGG+GGG - tig0001664:21276-21295 Msa1338130:CDS 40.0%
ACATGTTCACAGTCTGGCAA+AGG - tig0001664:19169-19188 Msa1338130:three_prime_UTR 45.0%
GCATCAAAATCATCTCTCCC+TGG + tig0001664:19202-19221 None:intergenic 45.0%
! TTTGGTTGACGTTTTGCGTG+GGG - tig0001664:19461-19480 Msa1338130:exon 45.0%
!! GTTTTGCGTGGGGTTTTAAC+AGG - tig0001664:19471-19490 Msa1338130:CDS 45.0%
TCTTTCTGTGAAGGGTTTCG+CGG + tig0001664:19595-19614 None:intergenic 45.0%
TGCGATTCCATTAATGCAGG+AGG - tig0001664:19628-19647 Msa1338130:CDS 45.0%
CTTGCAACCTCCTGCATTAA+TGG + tig0001664:19638-19657 None:intergenic 45.0%
GAAGCGATGAGGAGAATGTA+TGG - tig0001664:19769-19788 Msa1338130:CDS 45.0%
AGCGATGAGGAGAATGTATG+GGG - tig0001664:19771-19790 Msa1338130:CDS 45.0%
AGACCATGTGTCACCATCTA+CGG + tig0001664:19830-19849 None:intergenic 45.0%
ATGGTCTGTCATGCTGAGTT+GGG - tig0001664:19843-19862 Msa1338130:CDS 45.0%
CAAACTCAAAGGACAGTGTC+CGG + tig0001664:20089-20108 None:intergenic 45.0%
! CTGTCCTTTGAGTTTGTCGA+AGG - tig0001664:20093-20112 Msa1338130:intron 45.0%
GTCACCTTCGACAAACTCAA+AGG + tig0001664:20100-20119 None:intergenic 45.0%
CTGAACACATGCACAGAAGA+TGG + tig0001664:20310-20329 None:intergenic 45.0%
GGTCTCTCAGCCATTGAATT+AGG + tig0001664:20347-20366 None:intergenic 45.0%
GAGGATGGTATTTGTGAACC+CGG - tig0001664:20694-20713 Msa1338130:CDS 45.0%
GTATTTGTGAACCCGGAAAC+CGG - tig0001664:20701-20720 Msa1338130:CDS 45.0%
! GTGTTGTTCCTGCATTACAC+CGG + tig0001664:20723-20742 None:intergenic 45.0%
AGAGCCGTAGAGGTAAAATG+TGG - tig0001664:20750-20769 Msa1338130:CDS 45.0%
CACACTGAAGAACATGGATG+AGG - tig0001664:20793-20812 Msa1338130:intron 45.0%
CTGAGGATCCCAATAAACAC+TGG - tig0001664:20837-20856 Msa1338130:intron 45.0%
GGCCACAACCAGTGTTTATT+GGG + tig0001664:20848-20867 None:intergenic 45.0%
TGGCCACAACCAGTGTTTAT+TGG + tig0001664:20849-20868 None:intergenic 45.0%
!!! ACCGGTGAAGTTTTTTGGCA+AGG - tig0001664:20872-20891 Msa1338130:intron 45.0%
! GGAGAGAAGTTTAAGGCACA+AGG - tig0001664:20907-20926 Msa1338130:CDS 45.0%
GGCACAAGGAGAAAGAAAAG+AGG - tig0001664:20921-20940 Msa1338130:CDS 45.0%
CTTTCTTCCAAATCTGGTGG+AGG + tig0001664:21022-21041 None:intergenic 45.0%
GAGCTTTCTTCCAAATCTGG+TGG + tig0001664:21025-21044 None:intergenic 45.0%
! ATTCTAGGAAATGGTGTGGG+GGG - tig0001664:21277-21296 Msa1338130:CDS 45.0%
ACATGTTCACAGTCTGGCAA+AGG - tig0001664:19169-19188 Msa1338130:three_prime_UTR 45.0%
GCATCAAAATCATCTCTCCC+TGG + tig0001664:19202-19221 None:intergenic 45.0%
! TTTGGTTGACGTTTTGCGTG+GGG - tig0001664:19461-19480 Msa1338130:exon 45.0%
!! GTTTTGCGTGGGGTTTTAAC+AGG - tig0001664:19471-19490 Msa1338130:CDS 45.0%
TCTTTCTGTGAAGGGTTTCG+CGG + tig0001664:19595-19614 None:intergenic 45.0%
TGCGATTCCATTAATGCAGG+AGG - tig0001664:19628-19647 Msa1338130:CDS 45.0%
CTTGCAACCTCCTGCATTAA+TGG + tig0001664:19638-19657 None:intergenic 45.0%
GAAGCGATGAGGAGAATGTA+TGG - tig0001664:19769-19788 Msa1338130:CDS 45.0%
AGCGATGAGGAGAATGTATG+GGG - tig0001664:19771-19790 Msa1338130:CDS 45.0%
AGACCATGTGTCACCATCTA+CGG + tig0001664:19830-19849 None:intergenic 45.0%
ATGGTCTGTCATGCTGAGTT+GGG - tig0001664:19843-19862 Msa1338130:CDS 45.0%
CAAACTCAAAGGACAGTGTC+CGG + tig0001664:20089-20108 None:intergenic 45.0%
! CTGTCCTTTGAGTTTGTCGA+AGG - tig0001664:20093-20112 Msa1338130:intron 45.0%
GTCACCTTCGACAAACTCAA+AGG + tig0001664:20100-20119 None:intergenic 45.0%
CTGAACACATGCACAGAAGA+TGG + tig0001664:20310-20329 None:intergenic 45.0%
GGTCTCTCAGCCATTGAATT+AGG + tig0001664:20347-20366 None:intergenic 45.0%
GAGGATGGTATTTGTGAACC+CGG - tig0001664:20694-20713 Msa1338130:CDS 45.0%
GTATTTGTGAACCCGGAAAC+CGG - tig0001664:20701-20720 Msa1338130:CDS 45.0%
! GTGTTGTTCCTGCATTACAC+CGG + tig0001664:20723-20742 None:intergenic 45.0%
AGAGCCGTAGAGGTAAAATG+TGG - tig0001664:20750-20769 Msa1338130:CDS 45.0%
CACACTGAAGAACATGGATG+AGG - tig0001664:20793-20812 Msa1338130:intron 45.0%
CTGAGGATCCCAATAAACAC+TGG - tig0001664:20837-20856 Msa1338130:intron 45.0%
GGCCACAACCAGTGTTTATT+GGG + tig0001664:20848-20867 None:intergenic 45.0%
TGGCCACAACCAGTGTTTAT+TGG + tig0001664:20849-20868 None:intergenic 45.0%
!!! ACCGGTGAAGTTTTTTGGCA+AGG - tig0001664:20872-20891 Msa1338130:intron 45.0%
! GGAGAGAAGTTTAAGGCACA+AGG - tig0001664:20907-20926 Msa1338130:CDS 45.0%
GGCACAAGGAGAAAGAAAAG+AGG - tig0001664:20921-20940 Msa1338130:CDS 45.0%
CTTTCTTCCAAATCTGGTGG+AGG + tig0001664:21022-21041 None:intergenic 45.0%
GAGCTTTCTTCCAAATCTGG+TGG + tig0001664:21025-21044 None:intergenic 45.0%
! ATTCTAGGAAATGGTGTGGG+GGG - tig0001664:21277-21296 Msa1338130:CDS 45.0%
CCTGTTTGCAATGGCAAAGG+CGG + tig0001664:19287-19306 None:intergenic 50.0%
AGTCTTGGAGAGCAACAGCA+AGG - tig0001664:19344-19363 Msa1338130:three_prime_UTR 50.0%
TTGGAGAGCAACAGCAAGGA+AGG - tig0001664:19348-19367 Msa1338130:three_prime_UTR 50.0%
TTTCTGGGTGCGGATGGATA+CGG - tig0001664:19567-19586 Msa1338130:CDS 50.0%
! CCTCATCGCTTCTGAGAAAG+CGG + tig0001664:19761-19780 None:intergenic 50.0%
GAGGAGAATGTATGGGGTAC+AGG - tig0001664:19777-19796 Msa1338130:CDS 50.0%
GACCATGTGTCACCATCTAC+GGG + tig0001664:19829-19848 None:intergenic 50.0%
CATGGTCTGTCATGCTGAGT+TGG - tig0001664:19842-19861 Msa1338130:CDS 50.0%
ATGTTCTCCAGGTACACACC+CGG - tig0001664:19898-19917 Msa1338130:intron 50.0%
AATGAAACCGGGTGTGTACC+TGG + tig0001664:19908-19927 None:intergenic 50.0%
! TGCACCGACGAAGTAAAAGC+TGG + tig0001664:20409-20428 None:intergenic 50.0%
! AGGACAAGCACTGCTACTCA+AGG - tig0001664:20627-20646 Msa1338130:intron 50.0%
! GGACAAGCACTGCTACTCAA+GGG - tig0001664:20628-20647 Msa1338130:intron 50.0%
!! TCCTGCATTACACCGGTTTC+CGG + tig0001664:20716-20735 None:intergenic 50.0%
CACAAGTTCAAGAGCCGTAG+AGG - tig0001664:20740-20759 Msa1338130:CDS 50.0%
TGTGAAGCCTCCACCAGATT+TGG - tig0001664:21012-21031 Msa1338130:CDS 50.0%
CCTGTTTGCAATGGCAAAGG+CGG + tig0001664:19287-19306 None:intergenic 50.0%
AGTCTTGGAGAGCAACAGCA+AGG - tig0001664:19344-19363 Msa1338130:three_prime_UTR 50.0%
TTGGAGAGCAACAGCAAGGA+AGG - tig0001664:19348-19367 Msa1338130:three_prime_UTR 50.0%
TTTCTGGGTGCGGATGGATA+CGG - tig0001664:19567-19586 Msa1338130:CDS 50.0%
! CCTCATCGCTTCTGAGAAAG+CGG + tig0001664:19761-19780 None:intergenic 50.0%
GAGGAGAATGTATGGGGTAC+AGG - tig0001664:19777-19796 Msa1338130:CDS 50.0%
GACCATGTGTCACCATCTAC+GGG + tig0001664:19829-19848 None:intergenic 50.0%
CATGGTCTGTCATGCTGAGT+TGG - tig0001664:19842-19861 Msa1338130:CDS 50.0%
ATGTTCTCCAGGTACACACC+CGG - tig0001664:19898-19917 Msa1338130:intron 50.0%
AATGAAACCGGGTGTGTACC+TGG + tig0001664:19908-19927 None:intergenic 50.0%
! TGCACCGACGAAGTAAAAGC+TGG + tig0001664:20409-20428 None:intergenic 50.0%
! AGGACAAGCACTGCTACTCA+AGG - tig0001664:20627-20646 Msa1338130:intron 50.0%
! GGACAAGCACTGCTACTCAA+GGG - tig0001664:20628-20647 Msa1338130:intron 50.0%
!! TCCTGCATTACACCGGTTTC+CGG + tig0001664:20716-20735 None:intergenic 50.0%
CACAAGTTCAAGAGCCGTAG+AGG - tig0001664:20740-20759 Msa1338130:CDS 50.0%
TGTGAAGCCTCCACCAGATT+TGG - tig0001664:21012-21031 Msa1338130:CDS 50.0%
CACAGTCTGGCAAAGGTCGA+AGG - tig0001664:19176-19195 Msa1338130:three_prime_UTR 55.0%
CCGCCTTTGCCATTGCAAAC+AGG - tig0001664:19284-19303 Msa1338130:three_prime_UTR 55.0%
CCGCTTTCTCAGAAGCGATG+AGG - tig0001664:19758-19777 Msa1338130:CDS 55.0%
GGGCATGGGAGGCAAAGAAT+CGG + tig0001664:19809-19828 None:intergenic 55.0%
GTGTCACCATCTACGGGCAT+GGG + tig0001664:19823-19842 None:intergenic 55.0%
TGTGTCACCATCTACGGGCA+TGG + tig0001664:19824-19843 None:intergenic 55.0%
TGCCCGTAGATGGTGACACA+TGG - tig0001664:19824-19843 Msa1338130:CDS 55.0%
ACTCAAAGGACAGTGTCCGG+TGG + tig0001664:20086-20105 None:intergenic 55.0%
ATACCATCCTCCTTGCGCTG+TGG + tig0001664:20685-20704 None:intergenic 55.0%
!! CCTGCATTACACCGGTTTCC+GGG + tig0001664:20715-20734 None:intergenic 55.0%
! CACTGGTTGTGGCCATCAAC+CGG - tig0001664:20854-20873 Msa1338130:intron 55.0%
CACAGTCTGGCAAAGGTCGA+AGG - tig0001664:19176-19195 Msa1338130:three_prime_UTR 55.0%
CCGCCTTTGCCATTGCAAAC+AGG - tig0001664:19284-19303 Msa1338130:three_prime_UTR 55.0%
CCGCTTTCTCAGAAGCGATG+AGG - tig0001664:19758-19777 Msa1338130:CDS 55.0%
GGGCATGGGAGGCAAAGAAT+CGG + tig0001664:19809-19828 None:intergenic 55.0%
GTGTCACCATCTACGGGCAT+GGG + tig0001664:19823-19842 None:intergenic 55.0%
TGTGTCACCATCTACGGGCA+TGG + tig0001664:19824-19843 None:intergenic 55.0%
TGCCCGTAGATGGTGACACA+TGG - tig0001664:19824-19843 Msa1338130:CDS 55.0%
ACTCAAAGGACAGTGTCCGG+TGG + tig0001664:20086-20105 None:intergenic 55.0%
ATACCATCCTCCTTGCGCTG+TGG + tig0001664:20685-20704 None:intergenic 55.0%
!! CCTGCATTACACCGGTTTCC+GGG + tig0001664:20715-20734 None:intergenic 55.0%
! CACTGGTTGTGGCCATCAAC+CGG - tig0001664:20854-20873 Msa1338130:intron 55.0%
TCTGGCAAAGGTCGAAGGCC+AGG - tig0001664:19181-19200 Msa1338130:three_prime_UTR 60.0%
CTGGCAAAGGTCGAAGGCCA+GGG - tig0001664:19182-19201 Msa1338130:three_prime_UTR 60.0%
TTGCCTCCCATGCCCGTAGA+TGG - tig0001664:19814-19833 Msa1338130:CDS 60.0%
TCACCATCTACGGGCATGGG+AGG + tig0001664:19820-19839 None:intergenic 60.0%
CATCCTCCTTGCGCTGTGGT+AGG + tig0001664:20681-20700 None:intergenic 60.0%
CTACCACAGCGCAAGGAGGA+TGG - tig0001664:20679-20698 Msa1338130:CDS 60.0%
CCCGGAAACCGGTGTAATGC+AGG - tig0001664:20712-20731 Msa1338130:CDS 60.0%
TCTGGCAAAGGTCGAAGGCC+AGG - tig0001664:19181-19200 Msa1338130:three_prime_UTR 60.0%
CTGGCAAAGGTCGAAGGCCA+GGG - tig0001664:19182-19201 Msa1338130:three_prime_UTR 60.0%
TTGCCTCCCATGCCCGTAGA+TGG - tig0001664:19814-19833 Msa1338130:CDS 60.0%
TCACCATCTACGGGCATGGG+AGG + tig0001664:19820-19839 None:intergenic 60.0%
CATCCTCCTTGCGCTGTGGT+AGG + tig0001664:20681-20700 None:intergenic 60.0%
CTACCACAGCGCAAGGAGGA+TGG - tig0001664:20679-20698 Msa1338130:CDS 60.0%
CCCGGAAACCGGTGTAATGC+AGG - tig0001664:20712-20731 Msa1338130:CDS 60.0%
TGTGGGCCTACCACAGCGCA+AGG - tig0001664:20672-20691 Msa1338130:CDS 65.0%
TGTGGGCCTACCACAGCGCA+AGG - tig0001664:20672-20691 Msa1338130:CDS 65.0%
GGGCCTACCACAGCGCAAGG+AGG - tig0001664:20675-20694 Msa1338130:CDS 70.0%
GGGCCTACCACAGCGCAAGG+AGG - tig0001664:20675-20694 Msa1338130:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0001664 gene 19166 21371 19166 ID=Msa1338130;Name=Msa1338130
tig0001664 mRNA 19166 21371 19166 ID=Msa1338130-mRNA-1;Parent=Msa1338130;Name=Msa1338130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|5|302|346
tig0001664 exon 19166 19908 19166 ID=Msa1338130-mRNA-1:exon:1498;Parent=Msa1338130-mRNA-1
tig0001664 exon 20423 20501 20423 ID=Msa1338130-mRNA-1:exon:1497;Parent=Msa1338130-mRNA-1
tig0001664 exon 20629 20781 20629 ID=Msa1338130-mRNA-1:exon:1496;Parent=Msa1338130-mRNA-1
tig0001664 exon 20881 21044 20881 ID=Msa1338130-mRNA-1:exon:1495;Parent=Msa1338130-mRNA-1
tig0001664 exon 21168 21371 21168 ID=Msa1338130-mRNA-1:exon:1494;Parent=Msa1338130-mRNA-1
tig0001664 CDS 21168 21371 21168 ID=Msa1338130-mRNA-1:cds;Parent=Msa1338130-mRNA-1
tig0001664 CDS 20881 21044 20881 ID=Msa1338130-mRNA-1:cds;Parent=Msa1338130-mRNA-1
tig0001664 CDS 20629 20781 20629 ID=Msa1338130-mRNA-1:cds;Parent=Msa1338130-mRNA-1
tig0001664 CDS 20423 20501 20423 ID=Msa1338130-mRNA-1:cds;Parent=Msa1338130-mRNA-1
tig0001664 CDS 19468 19908 19468 ID=Msa1338130-mRNA-1:cds;Parent=Msa1338130-mRNA-1
tig0001664 three_prime_UTR 19166 19467 19166 ID=Msa1338130-mRNA-1:three_prime_utr;Parent=Msa1338130-mRNA-1
Gene Sequence

>Msa1338130

TTCACATGTTCACAGTCTGGCAAAGGTCGAAGGCCAGGGAGAGATGATTTTGATGCACCTTCTCGTCTTCCATTGCTTAACAATGCTTATTATCGAGATGTACTAGGTGAATTTGGAGCCGCCTTTGCCATTGCAAACAGGATTGATCGTTTACACAAAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGGCTTCTTTATCCAGAGCTGCTGAAAATGCATTACTAGACGCTGTCCAATCCAAAAAGAACGGGGATACATTATATTTCTGGGTGCGGATGGATACGGATCCGCGAAACCCTTCACAGAAAGACTTTTGGTCATTTTGCGATTCCATTAATGCAGGAGGTTGCAAATCCGCTTTCTCAGAAGCGATGAGGAGAATGTATGGGGTACAGGCTGATGCCGATTCTTTGCCTCCCATGCCCGTAGATGGTGACACATGGTCTGTCATGCTGAGTTGGGCTCTACCCACAAGATCATTTTTAGAGTTTGTGATGTTCTCCAGAATGTTTGTAGATGCACTGGATGCACAGATGTATGATGAACATCATTCCACCGGACACTGTCCTTTGAGTTTGTCGAAGGACAAGCACTGCTACTCAAGGGTTCTTGAGCTTCTTGTAAACGTGTGGGCCTACCACAGCGCAAGGAGGATGGTATTTGTGAACCCGGAAACCGGTGTAATGCAGGAACAACACAAGTTCAAGAGCCGTAGAGGTAAAATGTGGATCAAATGGTTCTCTTACAACACACTGAAGAACATGGATGAGGATTTAGCTGAGTTATCAGATTCTGAGGATCCCAATAAACACTGGTTGTGGCCATCAACCGGTGAAGTTTTTTGGCAAGGTTTATATGAGAGGGAGAGAAGTTTAAGGCACAAGGAGAAAGAAAAGAGGAAGCAAAAGAGTTTAGAAAAATTAAATAGAATGAGGAAGCGACATCGACAACAAGTAATCGGGAAATATGTGAAGCCTCCACCAGATTTGGAAGAAAGCTCTAATTCAACTTTGCTTGCAGTATAA
Protein sequence

>Msa1338130

FTCSQSGKGRRPGRDDFDAPSRLPLLNNAYYRDVLGEFGAAFAIANRIDRLHKNAWIGFQSWRATARKASLSRAAENALLDAVQSKKNGDTLYFWVRMDTDPRNPSQKDFWSFCDSINAGGCKSAFSEAMRRMYGVQADADSLPPMPVDGDTWSVMLSWALPTRSFLEFVMFSRMFVDALDAQMYDEHHSTGHCPLSLSKDKHCYSRVLELLVNVWAYHSARRMVFVNPETGVMQEQHKFKSRRGKMWIKWFSYNTLKNMDEDLAELSDSEDPNKHWLWPSTGEVFWQGLYERERSLRHKEKEKRKQKSLEKLNRMRKRHRQQVIGKYVKPPPDLEESSNSTLLAV*