AlfalfaGEDB | Msa0572480

M. sativa cultivar zhongmu-4 / Msa0572480

KEGG: K20283
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959
PFAM: PF07765.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572480	XP_013447167.2	94.313	1354	77	0	1	1354	1	1354	0.0	2438

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572480	sp\|F4JZY1\|CIP1_ARATH	28.694	1279	623	33	137	1352	528	1580	1.43e-74	277
Msa0572480	sp\|F4JZY1\|CIP1_ARATH	31.299	770	456	12	1	746	1	721	5.10e-59	228

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572480	A0A396GSE1	94.313	1354	77	0	1	1354	1	1354	0.0	2438

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0572480	-0.832451	9.384845e-56	-8.615850e-47
Msa0002230	Msa0572480	0.801551	8.536750e-49	-8.615850e-47
Msa0003050	Msa0572480	0.809766	1.609105e-50	-8.615850e-47
Msa0003300	Msa0572480	0.859720	3.401391e-63	-8.615850e-47
Msa0006110	Msa0572480	0.852519	4.377773e-61	-8.615850e-47
Msa0008290	Msa0572480	0.812790	3.549962e-51	-8.615850e-47
Msa0008670	Msa0572480	0.802171	6.367712e-49	-8.615850e-47
Msa0011250	Msa0572480	0.809954	1.465488e-50	-8.615850e-47
Msa0011500	Msa0572480	0.806986	6.300243e-50	-8.615850e-47
Msa0014570	Msa0572480	0.843762	1.147943e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572480	MtrunA17_Chr8g0387891	94.313	1354	77	0	1	1354	1	1354	0.0	2438
Msa0572480	MtrunA17_Chr8g0387911	65.527	702	163	7	687	1354	3	659	0.0	796
Msa0572480	MtrunA17_Chr8g0387911	33.333	687	315	21	423	1024	1	629	2.49e-49	187
Msa0572480	MtrunA17_Chr8g0387881	28.309	816	446	17	551	1348	83	777	1.07e-59	221
Msa0572480	MtrunA17_Chr8g0387881	30.328	366	229	7	340	683	99	460	6.41e-20	96.3
Msa0572480	MtrunA17_Chr8g0387901	84.286	70	11	0	1285	1354	1	70	9.28e-25	99.0
Msa0572480	MtrunA17_Chr5g0432781	23.711	582	361	18	7	544	18	560	2.31e-13	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572480	AT5G41790.1	28.694	1279	623	33	137	1352	528	1580	1.46e-75	277
Msa0572480	AT5G41790.1	31.299	770	456	12	1	746	1	721	5.19e-60	228
Msa0572480	AT5G41790.2	28.694	1279	623	33	137	1352	528	1580	1.46e-75	277
Msa0572480	AT5G41790.2	31.299	770	456	12	1	746	1	721	5.19e-60	228
Msa0572480	AT1G64330.1	42.017	238	117	4	1	238	1	217	1.45e-38	153
Msa0572480	AT5G41780.2	28.571	308	159	8	1039	1345	284	531	9.32e-15	79.3
Msa0572480	AT5G41780.3	28.571	308	159	8	1039	1345	284	531	9.32e-15	79.3
Msa0572480	AT5G41780.1	28.571	308	159	8	1039	1345	284	531	9.32e-15	79.3
Msa0572480	AT5G41780.4	28.571	308	159	8	1039	1345	284	531	9.32e-15	79.3
Msa0572480	AT1G64320.2	32.609	184	121	1	359	539	105	288	3.08e-14	78.2

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Find 239 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAAGCAATATTTA+AGG	0.207712	4_1:-75381476	Msa0572480:intron
AAAAGAGACCTGGAGGAGAA+AGG	0.542883	4_1:-75376113	Msa0572480:CDS
AAAATAGATCATTCGGAGAG+AGG	0.578565	4_1:-75376584	Msa0572480:CDS
AAACATCTCCCATGAGCTTC+AGG	0.394831	4_1:-75375769	Msa0572480:CDS
AAACCTAGTTGATCAATTGA+AGG	0.498028	4_1:-75378664	Msa0572480:CDS
AAACTTAGAGATAGAGAGTT+AGG	0.328511	4_1:+75382488	None:intergenic
AAAGCAAATAAGTGCTAACC+GGG	0.615043	4_1:-75376651	Msa0572480:CDS
AAAGGAAGATAGCTTTAGAA+AGG	0.556622	4_1:-75375991	Msa0572480:CDS
AAATCAATTGGTATTGATTG+TGG	0.500035	4_1:+75379222	None:intergenic
AAATCATATCGAAGACACGC+AGG	0.576181	4_1:-75375410	Msa0572480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTGAAGATGAAAGATGC+TGG	-	chr4_1:75375418-75375437	Msa0572480:CDS	30.0%
AAACTTAGAGATAGAGAGTT+AGG	+	chr4_1:75375587-75375606	None:intergenic	30.0%
GTTGAAAAAGAAGATGATGA+AGG	+	chr4_1:75375614-75375633	None:intergenic	30.0%
AAAACCATATCCAATTTCTG+CGG	+	chr4_1:75375896-75375915	None:intergenic	30.0%
TTCTGCTCTTTACTTTACTT+TGG	-	chr4_1:75376010-75376029	Msa0572480:CDS	30.0%
GCTTAATAGATTCAGAAAAG+AGG	-	chr4_1:75376565-75376584	Msa0572480:CDS	30.0%
GATTCAGAAAAGAGGATATA+AGG	-	chr4_1:75376573-75376592	Msa0572480:CDS	30.0%
TTAATTAATTAACGCACCAC+TGG	+	chr4_1:75377040-75377059	None:intergenic	30.0%
ACTGTTACTAAACCAAAATG+TGG	+	chr4_1:75377073-75377092	None:intergenic	30.0%
TGTCAAAAAGATACTAGATG+CGG	+	chr4_1:75377107-75377126	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	75375392	75382702	75375392	ID=Msa0572480;Name=Msa0572480
chr4_1	mRNA	75375392	75382702	75375392	ID=Msa0572480-mRNA-1;Parent=Msa0572480;Name=Msa0572480-mRNA-1;_AED=0.22;_eAED=0.22;_QI=493\|1\|0.8\|1\|0.25\|0.4\|5\|0\|1354
chr4_1	exon	75375392	75379362	75375392	ID=Msa0572480-mRNA-1:exon:26093;Parent=Msa0572480-mRNA-1
chr4_1	exon	75379509	75379683	75379509	ID=Msa0572480-mRNA-1:exon:26092;Parent=Msa0572480-mRNA-1
chr4_1	exon	75381477	75381552	75381477	ID=Msa0572480-mRNA-1:exon:26091;Parent=Msa0572480-mRNA-1
chr4_1	exon	75382273	75382356	75382273	ID=Msa0572480-mRNA-1:exon:26090;Parent=Msa0572480-mRNA-1
chr4_1	exon	75382451	75382702	75382451	ID=Msa0572480-mRNA-1:exon:26089;Parent=Msa0572480-mRNA-1
chr4_1	five_prime_UTR	75382451	75382702	75382451	ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1	five_prime_UTR	75382273	75382356	75382273	ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1	five_prime_UTR	75381477	75381552	75381477	ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1	five_prime_UTR	75379603	75379683	75379603	ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1	CDS	75379509	75379602	75379509	ID=Msa0572480-mRNA-1:cds;Parent=Msa0572480-mRNA-1
chr4_1	CDS	75375392	75379362	75375392	ID=Msa0572480-mRNA-1:cds;Parent=Msa0572480-mRNA-1

Gene Sequence

>Msa0572480

ATGGTGAAACATCACTTGAGAAAGTCTATAAAATCGCTGTTTGAAAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGGAGCTAAAACAGAAATTGAAGACAAAGTTAAAAGGATATTGAAACTTATTAAAGATGACAACCTTGAAGAGGATGGTACCTCAGCAGAAATTTTGAAGAGGGAACCGCTTGCTGAATTGATTGAGGATATCCACAATCAATACCAATTGATTTACACACAGCATGATCATCTGACAGGTGAGTTAAAGAAAAGGATCAAAGGCAAGCGAGAAAAAGGAAGTTCTTCATCCAGCTCTGATTCAGATTCGGATTCGGATTATTCTTCAAAGGACAGAGGCAGCAAAAATGGTCAACTGCAAAATGAGTTTCAAAAGATAATTGATGGATTAAAGCAAGAACTTGAAGTGGCGCATAAGGAAGTCGCTGACTTAAATCAGAAGTTGACAGTTACACATGAAGAGAAGGAGAACATAAGTTCAAAACACCTTGCAGCATTGACCAAGATACAAGAAGCAGACAAGGTTAGTATGAATTTGAAAACTGATGCTGAGGCATTTGAGATACAAATATCAAAACTTTTGGCTGAGAATACTGAACTAAATAAGCAACTGGACATTGCTGGTAGAGTAGAAGCTGAACTGAGTCAAAAATTGGAGGATATGAAGACAGAAAACAATAGCTTGGCCATGGAGAAAGAGACAGCTCTCCAACAGATTGGTGAGGAAAGGAAGATTACAGATGACCTGAGAAACCTAGTTGATCAATTGAAGGATGATAAGTCAGTGATTGCAAAGGAATTACAAGCAGCAACAGATGAACTTTCTATTCTGAAGCAGCAATTGAAACATGCAGAACAACAAATAACAACAATAAGCCACAATCTGGAGGTTACAGAGGAAGAAAATAAATCATTAAAAGCAGAAATTTCACAAGCTTCAAATGAGATTCAGCTGTCTCAGAACAGAATACAGGAATTTGCATCTGAATTAAGTCAGTTAAAGGAGAAACATGATGAGAAAGACAGGGAAGTGTCAACCCTCACTCAGATCCACGAAGGGCATAAGAATGAGTCCTCAAATCTTATCAGGGAACTAGAGACACAAATCACAAATCTGGGGATGGAATTAGCATCACTGCAAAACGAGAAAAAAGATATGGAGGATCAACTTAAGAGCAGCACCACTGAAAAAAGAGAACTGGAAGAGCGCAATTTAGGCTTGCTAAACCAAATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATCTGCTATCATGAAGAAACTCAAAGATAATGGGGATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGCTCGCTGATTTAAGCTCATTACATGCTCAGAAAACTGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAACTCGAGTTGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATAGAAGACAGAGAACATTTTACAAAAGAAAGAGAAGAGGAACTATCTGATATCATGAAGAAACTCCAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAAATCAAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCAGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGGCAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTTACAAAAGAAAGAGAAGCGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGAAAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATTATTTTTAAAAGTAATGAAGCCTCAACTCGAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACGACACCAGAAATCTGACCTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAGAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTAACCAGGCAGATAAAGAATCTGGAACTGGAGATAAGCTCCATCAAGAGCAAAAATAGCAAAGATGAAGAGCAAATAAGGACCAACGTCCAAGTGATCAATCATCTCCAGGATAAAATTCATATGGCAGAGATAGAAGGTTCAACCCAAATAGTTGCCTTTGGTGAGCAAATTAAGAATCTTCAACTTAATTTGGCACAGGAACTAGCGCAGCAGCGCAAAAAAATGGAGTTGGAGCTGGATTCCATACGCAGCCAGAAGAGTGAAGTTGAAGAGCAGTTAAGAGCCAAAGACCGCGAGTTGAACACTTTAGAGCAAAAAGAAAGTGAATACGCAAAGCAAATAAGTGCTAACCGGGATGAGATCAGTAAACTGGCACAGGAAAATTTGGAGCTAGCAGACAAAATAGATCATTCGGAGAGAGGATTAGCAACAAGAGAATTTGAGTTCTCTGCGCTTCAGGATAAACTTTATAAGGCAGAGGAAGAGGCTTCAGGAAAAACAATTGCCTTCACAGCTCAAGTTGACAATCTGAAAAAGGACTTGCTTTCCTTGCAGAAAACAAAAGAAGAATTGGAGCTCTGCTGTGAAAATATCAAAGAAGAACACACAGAAGTCCTCAGAATGGTTGACAATGAAAAGAATGAATTAGCCAACAAAAACATGGATCTTCAGAGAACATTGGAAGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAATTGGTTTAATGAATACAAGGTCAAACTTGAAGTTGCTGAGAGGAAAATGGAAGAAATGGCAGAAGAGTTTCGTGAAGGCATTGGGTCAAAAGATCAGATGGTAACTGATTTGGAACAGCAAGTTGAAGACCTGAAAAGAGACCTGGAGGAGAAAGGAGATGAAGTCAGCACTTTGTTTGAGAATGTCAGGAATCTTGAGGTAAAGCTTCGCCTGTCAAACCAAAAGCTCCGGGTTACAGAACAATTGCTAAGTGAAAAGGAAGATAGCTTTAGAAAGGCGGAACAAGAGTTTCAGCAAGTTCAGAGAGAACTTGAAGACAGGATTGCTACTCTGGTAGCTACAATCACCGCTAACAATGAAGCTTTTCATGAAACTATCACAAGTGTTAAAGTGTGTGTCAACAGTGTGATATCTGGGATAGATACTGTGAGCAGGAAATTTTCCGACGAAAGCAAAAATCATGAGAACTACATCTCAAACATCTCCCATGAGCTTCAGGTTGCAAAAGAATCTGTCAGCGAGATGAATAGGGTGAAGGGGCAGTTACAGAGAGATAAAGATCGTTTGTTGGAGGAACTGCAGGGTAAAAAGGAAGAGGAATTAACTCTGAGGGAAAAGGTTGAGAAGCTAGAGGCGAAGGCAAGAAAGGAGGAATCAGAGAAGATGAATGTGACATCAACTGTTGTTGAACTTAAGAAGACGGTTGAGGCGCTAGAGAAGTTGATGAAAGAGAAAGAGGAAGGCATGTTGGACTTGGGAGAGGAAAAGAGGGAGGCCATCAGGCAGCTCTGTTTGTGGATTGATTATCACCGCGAGTGTAGTGACTATCTCAAGGAAATCATATCGAAGACACGCAGGGGCCAGAGAGCAGCATAA

Protein sequence

>Msa0572480

MVKHHLRKSIKSLFESHIDPDKEEQLQGAKTEIEDKVKRILKLIKDDNLEEDGTSAEILKREPLAELIEDIHNQYQLIYTQHDHLTGELKKRIKGKREKGSSSSSSDSDSDSDYSSKDRGSKNGQLQNEFQKIIDGLKQELEVAHKEVADLNQKLTVTHEEKENISSKHLAALTKIQEADKVSMNLKTDAEAFEIQISKLLAENTELNKQLDIAGRVEAELSQKLEDMKTENNSLAMEKETALQQIGEERKITDDLRNLVDQLKDDKSVIAKELQAATDELSILKQQLKHAEQQITTISHNLEVTEEENKSLKAEISQASNEIQLSQNRIQEFASELSQLKEKHDEKDREVSTLTQIHEGHKNESSNLIRELETQITNLGMELASLQNEKKDMEDQLKSSTTEKRELEERNLGLLNQISELEMKSKEREEELSAIMKKLKDNGDESSSKISDLTSQIDNLLADLSSLHAQKTELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLIEDREHFTKEREEELSDIMKKLQDNENESSSKISDLTSQIDNLLADISSLHAQKNELEEQIIFKSNEASNQVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVGRKSLEQERLMEDRENFTKEREAELSDIMKKLKDNENESSSKISDLTSQIENLLADISSLHAQKNELEEQIIFKSNEASTRVESITNELNVLQQEVESLRHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLMEDRENLTRQIKNLELEISSIKSKNSKDEEQIRTNVQVINHLQDKIHMAEIEGSTQIVAFGEQIKNLQLNLAQELAQQRKKMELELDSIRSQKSEVEEQLRAKDRELNTLEQKESEYAKQISANRDEISKLAQENLELADKIDHSERGLATREFEFSALQDKLYKAEEEASGKTIAFTAQVDNLKKDLLSLQKTKEELELCCENIKEEHTEVLRMVDNEKNELANKNMDLQRTLEEREDAYQKLNEEYKQIDNWFNEYKVKLEVAERKMEEMAEEFREGIGSKDQMVTDLEQQVEDLKRDLEEKGDEVSTLFENVRNLEVKLRLSNQKLRVTEQLLSEKEDSFRKAEQEFQQVQRELEDRIATLVATITANNEAFHETITSVKVCVNSVISGIDTVSRKFSDESKNHENYISNISHELQVAKESVSEMNRVKGQLQRDKDRLLEELQGKKEEELTLREKVEKLEAKARKEESEKMNVTSTVVELKKTVEALEKLMKEKEEGMLDLGEEKREAIRQLCLWIDYHRECSDYLKEIISKTRRGQRAA*