AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572480 MtrunA17_Chr8g0387891 94.313 1354 77 0 1 1354 1 1354 0.0 2438
Msa0572480 MtrunA17_Chr8g0387911 65.527 702 163 7 687 1354 3 659 0.0 796
Msa0572480 MtrunA17_Chr8g0387911 33.333 687 315 21 423 1024 1 629 2.49e-49 187
Msa0572480 MtrunA17_Chr8g0387881 28.309 816 446 17 551 1348 83 777 1.07e-59 221
Msa0572480 MtrunA17_Chr8g0387881 30.328 366 229 7 340 683 99 460 6.41e-20 96.3
Msa0572480 MtrunA17_Chr8g0387901 84.286 70 11 0 1285 1354 1 70 9.28e-25 99.0
Msa0572480 MtrunA17_Chr5g0432781 23.711 582 361 18 7 544 18 560 2.31e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572480 AT5G41790.1 28.694 1279 623 33 137 1352 528 1580 1.46e-75 277
Msa0572480 AT5G41790.1 31.299 770 456 12 1 746 1 721 5.19e-60 228
Msa0572480 AT5G41790.2 28.694 1279 623 33 137 1352 528 1580 1.46e-75 277
Msa0572480 AT5G41790.2 31.299 770 456 12 1 746 1 721 5.19e-60 228
Msa0572480 AT1G64330.1 42.017 238 117 4 1 238 1 217 1.45e-38 153
Msa0572480 AT5G41780.2 28.571 308 159 8 1039 1345 284 531 9.32e-15 79.3
Msa0572480 AT5G41780.3 28.571 308 159 8 1039 1345 284 531 9.32e-15 79.3
Msa0572480 AT5G41780.1 28.571 308 159 8 1039 1345 284 531 9.32e-15 79.3
Msa0572480 AT5G41780.4 28.571 308 159 8 1039 1345 284 531 9.32e-15 79.3
Msa0572480 AT1G64320.2 32.609 184 121 1 359 539 105 288 3.08e-14 78.2
Msa0572480 AT1G64320.2 24.474 666 349 21 693 1347 96 618 1.61e-11 69.3
Msa0572480 AT1G64320.1 32.609 184 121 1 359 539 105 288 3.08e-14 78.2
Msa0572480 AT1G64320.1 24.474 666 349 21 693 1347 96 618 1.61e-11 69.3

Find 239 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAAGTTCTGAAATT+TGG 0.142967 4_1:+75378187 None:intergenic
TAAGAATCTTCAACTTAATT+TGG 0.157767 4_1:-75376813 Msa0572480:CDS
GAACTTCCAGGTCAGATTTC+TGG 0.200021 4_1:+75377125 None:intergenic
AATATAAACAAATTGATAAT+TGG 0.205472 4_1:-75376265 Msa0572480:CDS
AAAACTTGAAGCAATATTTA+AGG 0.207712 4_1:-75381476 Msa0572480:intron
TGGAGCTGCTCTTCTTTATC+AGG 0.210060 4_1:+75379523 None:intergenic
GCTCACCAAAGGCAACTATT+TGG 0.214310 4_1:+75376840 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 4_1:+75377306 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 4_1:+75377699 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 4_1:+75378092 None:intergenic
TAGTTCCTCTTCTCTTTCTT+TGG 0.220995 4_1:+75378161 None:intergenic
ATCTGAATTAAGTCAGTTAA+AGG 0.235617 4_1:-75378433 Msa0572480:CDS
AATTTCATGAATGGAATCTT+TGG 0.249338 4_1:+75382673 None:intergenic
TAAACTGGCACAGGAAAATT+TGG 0.249711 4_1:-75376618 Msa0572480:CDS
CTTGTCTGCTTCTTGTATCT+TGG 0.254462 4_1:+75378914 None:intergenic
ATGAGTCCTCAAATCTTATC+AGG 0.261640 4_1:-75378347 Msa0572480:CDS
GAACTTCCAAGTCAGATTTC+TGG 0.263958 4_1:+75377518 None:intergenic
GAACTTCCAAGTCAGATTTC+TGG 0.263958 4_1:+75377911 None:intergenic
ATCAAAGGCAAGCGAGAAAA+AGG 0.270364 4_1:-75379158 Msa0572480:CDS
TCAAGTTGACAATCTGAAAA+AGG 0.281841 4_1:-75376468 Msa0572480:CDS
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 4_1:+75377023 None:intergenic
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 4_1:+75377416 None:intergenic
GCAAAGATGAAGAGCAAATA+AGG 0.284452 4_1:-75376928 Msa0572480:CDS
ATGAAGAAACTCAAAGATAA+TGG 0.288409 4_1:-75378129 Msa0572480:CDS
GATTCAGAAAAGAGGATATA+AGG 0.290887 4_1:-75381499 Msa0572480:five_prime_UTR
CTATAAGTCTCTCTTGTTCC+AGG 0.293435 4_1:+75377809 None:intergenic
GCTCTTCAACTTCACTCTTC+TGG 0.295087 4_1:+75376732 None:intergenic
GCTTCAGGATAAACTTTATA+AGG 0.298812 4_1:-75376531 Msa0572480:CDS
GATACAAATATCAAAACTTT+TGG 0.303373 4_1:-75378853 Msa0572480:CDS
TTTCCACAAGCTGAACTTCC+AGG 0.314911 4_1:+75377113 None:intergenic
AGATCAGATGGTAACTGATT+TGG 0.316800 4_1:-75376156 Msa0572480:CDS
ATGATTCATTCTCATTATCT+TGG 0.317997 4_1:+75377725 None:intergenic
CTCACCAAAGGCAACTATTT+GGG 0.320192 4_1:+75376841 None:intergenic
GTTCTGTAACCCGGAGCTTT+TGG 0.321991 4_1:+75376027 None:intergenic
TGTAAACTTAATTAAACTAT+AGG 0.326875 4_1:-75382553 Msa0572480:five_prime_UTR
AAACTTAGAGATAGAGAGTT+AGG 0.328511 4_1:+75382488 None:intergenic
GAGTTTCAAAAGATAATTGA+TGG 0.329519 4_1:-75379050 Msa0572480:CDS
ATTTGAGTTCTCTGCGCTTC+AGG 0.332437 4_1:-75376546 Msa0572480:CDS
GCAGAAAACAAAAGAAGAAT+TGG 0.332606 4_1:-75376432 Msa0572480:CDS
TGAAGAAACTCAAAGATAAT+GGG 0.336542 4_1:-75378128 Msa0572480:CDS
TGAAGTTGCTGAGAGGAAAA+TGG 0.336584 4_1:-75376219 Msa0572480:CDS
GAACTGGAAGAGCGCAATTT+AGG 0.347892 4_1:-75378219 Msa0572480:CDS
AGAGACACAAATCACAAATC+TGG 0.348240 4_1:-75378319 Msa0572480:CDS
GGAGGAACTGCAGGGTAAAA+AGG 0.350540 4_1:-75375676 Msa0572480:CDS
AGTGTTCAACTCGCGGTCTT+TGG 0.356053 4_1:+75376700 None:intergenic
AATCTGTCAGCGAGATGAAT+AGG 0.370727 4_1:-75375737 Msa0572480:CDS
CTCTGATTCAGATTCGGATT+CGG 0.379482 4_1:-75379120 Msa0572480:CDS
AAATTGAAGACAAAGTTAAA+AGG 0.385979 4_1:-75379340 Msa0572480:CDS
CCATCAGGCAGCTCTGTTTG+TGG 0.387435 4_1:-75375470 Msa0572480:CDS
CTGAGGTACCATCCTCTTCA+AGG 0.389764 4_1:+75379291 None:intergenic
AAGGCAGAGGAAGAGGCTTC+AGG 0.392378 4_1:-75376512 Msa0572480:CDS
AAACATCTCCCATGAGCTTC+AGG 0.394831 4_1:-75375769 Msa0572480:CDS
TCATCTTCAAATTTCATGAA+TGG 0.394962 4_1:+75382664 None:intergenic
CAAAGCAAATAAGTGCTAAC+CGG 0.397945 4_1:-75376652 Msa0572480:CDS
CCTGGAGATGATTGATCACT+TGG 0.398053 4_1:+75376897 None:intergenic
TCCTTTCCTCACCAATCTGT+TGG 0.398228 4_1:+75378706 None:intergenic
AACCAGGCAGATAAAGAATC+TGG 0.399619 4_1:-75376984 Msa0572480:CDS
TTCCAGATTCTTTATCTGCC+TGG 0.400921 4_1:+75376982 None:intergenic
AGAGGAAGGCATGTTGGACT+TGG 0.402054 4_1:-75375511 Msa0572480:CDS
ATCCAGCTCTGATTCAGATT+CGG 0.402519 4_1:-75379126 Msa0572480:CDS
GCACTTTGTTTGAGAATGTC+AGG 0.405597 4_1:-75376079 Msa0572480:CDS
CTTCATCTCCTTTCTCCTCC+AGG 0.406034 4_1:+75376105 None:intergenic
TTGTTCACCATGTAGATTCC+AGG 0.410812 4_1:+75379651 None:intergenic
AGGAAAAGAGGGAGGCCATC+AGG 0.414307 4_1:-75375485 Msa0572480:CDS
GCCTGTCAAACCAAAAGCTC+CGG 0.415656 4_1:-75376037 Msa0572480:CDS
CAGCTCCAGGGAGCTAAAAC+AGG 0.419836 4_1:-75379508 Msa0572480:intron
ATTGATCAACTAGGTTTCTC+AGG 0.421379 4_1:+75378670 None:intergenic
TAGTTCCCTGATAAGATTTG+AGG 0.422432 4_1:+75378341 None:intergenic
TCAACCCAAATAGTTGCCTT+TGG 0.424305 4_1:-75376845 Msa0572480:CDS
AACAACAATAAGCCACAATC+TGG 0.428884 4_1:-75378550 Msa0572480:CDS
TGAAGACAGGATTGCTACTC+TGG 0.430102 4_1:-75375934 Msa0572480:CDS
GAAGTTGATGAAAGAGAAAG+AGG 0.436821 4_1:-75375529 Msa0572480:CDS
AAGAGTTTCGTGAAGGCATT+GGG 0.436849 4_1:-75376184 Msa0572480:CDS
ATTCATATGGCAGAGATAGA+AGG 0.439111 4_1:-75376869 Msa0572480:CDS
TCGTTTGTTGGAGGAACTGC+AGG 0.439419 4_1:-75375685 Msa0572480:CDS
AGCAGACAAAATAGATCATT+CGG 0.441030 4_1:-75376591 Msa0572480:CDS
AGAAACATGATGAGAAAGAC+AGG 0.442189 4_1:-75378410 Msa0572480:CDS
AATGCTTTCGACTTGATTTG+AGG 0.442769 4_1:+75377588 None:intergenic
TGAGAGGAAAATGGAAGAAA+TGG 0.442900 4_1:-75376210 Msa0572480:CDS
ACTTGATATTGCTAAGAAGT+TGG 0.446043 4_1:-75379618 Msa0572480:five_prime_UTR
CCTGGAACAAGAGAGACTTA+TGG 0.446554 4_1:-75377023 Msa0572480:CDS
CCTGGAACAAGAGAGACTTA+TGG 0.446554 4_1:-75377416 Msa0572480:CDS
TGTGTCAACAGTGTGATATC+TGG 0.447261 4_1:-75375852 Msa0572480:CDS
AGAACTTGAAGTGGCGCATA+AGG 0.448377 4_1:-75379018 Msa0572480:CDS
TTGGATATCAGTGGAGAAGA+TGG 0.448774 4_1:-75379599 Msa0572480:exon
TACTGAACTAAATAAGCAAC+TGG 0.449051 4_1:-75378823 Msa0572480:CDS
AATAAGCAACTGGACATTGC+TGG 0.450405 4_1:-75378813 Msa0572480:CDS
GAAGAGTTTCGTGAAGGCAT+TGG 0.453185 4_1:-75376185 Msa0572480:CDS
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 4_1:+75377024 None:intergenic
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 4_1:+75377417 None:intergenic
GAAGGACTTATGCTGCTCTC+TGG 0.459241 4_1:+75375385 None:intergenic
ACTCATTCTTATGCCCTTCG+TGG 0.460651 4_1:+75378364 None:intergenic
CCGGGATGAGATCAGTAAAC+TGG 0.460817 4_1:-75376633 Msa0572480:CDS
ATCTCAGATAGAAAATTTGT+TGG 0.461527 4_1:-75377287 Msa0572480:CDS
GGACTTGGGAGAGGAAAAGA+GGG 0.461535 4_1:-75375496 Msa0572480:CDS
AATAATAATGGAATGAAAAG+TGG 0.461986 4_1:+75382604 None:intergenic
GAGACACAAATCACAAATCT+GGG 0.465332 4_1:-75378318 Msa0572480:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 4_1:-75377161 Msa0572480:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 4_1:-75377554 Msa0572480:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 4_1:-75377947 Msa0572480:CDS
ACATGCTCAGAAAACTGAAC+TGG 0.466249 4_1:-75378034 Msa0572480:CDS
TCTCCAGGATAAAATTCATA+TGG 0.467977 4_1:-75376882 Msa0572480:CDS
GAGAGATAAAGATCGTTTGT+TGG 0.470868 4_1:-75375697 Msa0572480:CDS
CATCCTTCAATTGATCAACT+AGG 0.470968 4_1:+75378661 None:intergenic
AGAACAATTGCTAAGTGAAA+AGG 0.470987 4_1:-75376009 Msa0572480:CDS
ATGAAAAGCTTCATTGTTAG+CGG 0.473067 4_1:+75375899 None:intergenic
TATAAGTCTCTCTTGTTCCA+GGG 0.474446 4_1:+75377810 None:intergenic
GCTAGAGGCGAAGGCAAGAA+AGG 0.475163 4_1:-75375619 Msa0572480:CDS
ATCTGTCAGCGAGATGAATA+GGG 0.476754 4_1:-75375736 Msa0572480:CDS
ATCTCAGATAGACAATTTGT+TGG 0.478113 4_1:-75377680 Msa0572480:CDS
TGATAAAGAAGAGCAGCTCC+AGG 0.481731 4_1:-75379521 Msa0572480:CDS
ACTTTATAAGGCAGAGGAAG+AGG 0.486519 4_1:-75376519 Msa0572480:CDS
TGGACTTGGGAGAGGAAAAG+AGG 0.486625 4_1:-75375497 Msa0572480:CDS
GGAATTAACTCTGAGGGAAA+AGG 0.491576 4_1:-75375649 Msa0572480:CDS
GCAGATAAAGAATCTGGAAC+TGG 0.493067 4_1:-75376978 Msa0572480:CDS
CCTCTGTAACCTCCAGATTG+TGG 0.497168 4_1:+75378538 None:intergenic
ATGATTGATCACTTGGACGT+TGG 0.497533 4_1:+75376904 None:intergenic
TTCACTCTTCTGGCTGCGTA+TGG 0.497591 4_1:+75376742 None:intergenic
TTCAGAGAGAACTTGAAGAC+AGG 0.497857 4_1:-75375947 Msa0572480:CDS
AAACCTAGTTGATCAATTGA+AGG 0.498028 4_1:-75378664 Msa0572480:CDS
AGAGATAGAGAGTTAGGAAG+AGG 0.498876 4_1:+75382494 None:intergenic
AAATCAATTGGTATTGATTG+TGG 0.500035 4_1:+75379222 None:intergenic
CATGCTGTGTGTAAATCAAT+TGG 0.500843 4_1:+75379210 None:intergenic
GAGAGCTGTCTCTTTCTCCA+TGG 0.510229 4_1:+75378728 None:intergenic
GGAGCTGCTCTTCTTTATCA+GGG 0.518143 4_1:+75379524 None:intergenic
GCTGTCTCAGAACAGAATAC+AGG 0.519724 4_1:-75378463 Msa0572480:CDS
ATTCTTAATTTGCTCACCAA+AGG 0.522434 4_1:+75376829 None:intergenic
GGTTGAGAAGCTAGAGGCGA+AGG 0.522512 4_1:-75375628 Msa0572480:CDS
ACCGCTTGCTGAATTGATTG+AGG 0.523412 4_1:-75379249 Msa0572480:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 4_1:-75377455 Msa0572480:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 4_1:-75377848 Msa0572480:CDS
TAATTGGTTTAATGAATACA+AGG 0.524529 4_1:-75376249 Msa0572480:CDS
CCTCTTCAAAATTTCTGCTG+AGG 0.526955 4_1:+75379274 None:intergenic
ATCCGAATCTGAATCAGAGC+TGG 0.527732 4_1:+75379124 None:intergenic
GCTTAATAGATTCAGAAAAG+AGG 0.529190 4_1:-75381507 Msa0572480:five_prime_UTR
CCAAGTGATCAATCATCTCC+AGG 0.530449 4_1:-75376897 Msa0572480:CDS
GGAGGTTGGCAGAAAATCCC+TGG 0.530652 4_1:-75377434 Msa0572480:CDS
ATTGTCAACTTGAGCTGTGA+AGG 0.530781 4_1:+75376478 None:intergenic
CTGAATTTGAATTGAACACT+CGG 0.531534 4_1:+75377075 None:intergenic
TCTTCAACTTAATTTGGCAC+AGG 0.532614 4_1:-75376807 Msa0572480:CDS
TTGATGAAAGAGAAAGAGGA+AGG 0.532949 4_1:-75375525 Msa0572480:CDS
GAAGACAGAAAACAATAGCT+TGG 0.533835 4_1:-75378751 Msa0572480:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 4_1:-75377041 Msa0572480:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 4_1:-75377827 Msa0572480:CDS
GGATAAACTTTATAAGGCAG+AGG 0.539603 4_1:-75376525 Msa0572480:CDS
GACAGTTACACATGAAGAGA+AGG 0.541075 4_1:-75378970 Msa0572480:CDS
AAAAGAGACCTGGAGGAGAA+AGG 0.542883 4_1:-75376113 Msa0572480:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 4_1:-75377167 Msa0572480:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 4_1:-75377560 Msa0572480:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 4_1:-75377953 Msa0572480:CDS
AGCGAGATGAATAGGGTGAA+GGG 0.545897 4_1:-75375729 Msa0572480:CDS
TGAACTTAAGAAGACGGTTG+AGG 0.546303 4_1:-75375559 Msa0572480:CDS
AGAGAAAGAGGAAGGCATGT+TGG 0.551950 4_1:-75375517 Msa0572480:CDS
GAGACAGCTCTCCAACAGAT+TGG 0.552178 4_1:-75378717 Msa0572480:CDS
GCCCTTCGTGGATCTGAGTG+AGG 0.552709 4_1:+75378376 None:intergenic
GGATTCGGATTATTCTTCAA+AGG 0.553942 4_1:-75379105 Msa0572480:CDS
TGAGATCAGTAAACTGGCAC+AGG 0.554312 4_1:-75376627 Msa0572480:CDS
GAAGTCCAAAGAAAGAGAAG+AGG 0.554619 4_1:-75378166 Msa0572480:CDS
TGACAGGTGAGTTAAAGAAA+AGG 0.555026 4_1:-75379181 Msa0572480:CDS
TTTCATTGTCAACCATTCTG+AGG 0.555248 4_1:+75376369 None:intergenic
TGAAGACCTGAAAAGAGACC+TGG 0.555585 4_1:-75376123 Msa0572480:CDS
AAAGGAAGATAGCTTTAGAA+AGG 0.556622 4_1:-75375991 Msa0572480:CDS
AGGCATGTTGGACTTGGGAG+AGG 0.561691 4_1:-75375505 Msa0572480:CDS
CCTGTCAAACCAAAAGCTCC+GGG 0.563571 4_1:-75376036 Msa0572480:CDS
TCAAATTCAGAGTCTGAAAG+AGG 0.564270 4_1:-75377062 Msa0572480:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 4_1:-75377524 Msa0572480:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 4_1:-75377917 Msa0572480:CDS
TTGAATTTGAATTGAACACT+CGG 0.566781 4_1:+75377861 None:intergenic
TAAAGATGACAACCTTGAAG+AGG 0.567802 4_1:-75379303 Msa0572480:CDS
AGAAAACAATAGCTTGGCCA+TGG 0.568696 4_1:-75378745 Msa0572480:CDS
CATGGATCTTCAGAGAACAT+TGG 0.568700 4_1:-75376324 Msa0572480:CDS
CTGGGATAGATACTGTGAGC+AGG 0.568744 4_1:-75375833 Msa0572480:CDS
TCCTCAATCAATTCAGCAAG+CGG 0.569949 4_1:+75379248 None:intergenic
TGTTGTTGAACTTAAGAAGA+CGG 0.572100 4_1:-75375565 Msa0572480:CDS
CAAAGTCTGAAAGAGGAGGT+TGG 0.573897 4_1:-75377448 Msa0572480:CDS
TTCACTTCCTGGAATCTACA+TGG 0.574341 4_1:-75379658 Msa0572480:five_prime_UTR
TCCAACAGATTGGTGAGGAA+AGG 0.575028 4_1:-75378707 Msa0572480:CDS
CAGCGAGATGAATAGGGTGA+AGG 0.575295 4_1:-75375730 Msa0572480:CDS
GTGTCAACAGTGTGATATCT+GGG 0.575454 4_1:-75375851 Msa0572480:CDS
AAATCATATCGAAGACACGC+AGG 0.576181 4_1:-75375410 Msa0572480:CDS
GAGGAAGGCATGTTGGACTT+GGG 0.576737 4_1:-75375510 Msa0572480:CDS
ACGACACCAGAAATCTGACC+TGG 0.577406 4_1:-75377131 Msa0572480:CDS
AAAATAGATCATTCGGAGAG+AGG 0.578565 4_1:-75376584 Msa0572480:CDS
CATTGGGTCAAAAGATCAGA+TGG 0.581037 4_1:-75376168 Msa0572480:CDS
GGAAGAGGAATTAACTCTGA+GGG 0.583443 4_1:-75375655 Msa0572480:CDS
GTATCTTGGTCAATGCTGCA+AGG 0.590088 4_1:+75378928 None:intergenic
TTAGCAATTGTTCTGTAACC+CGG 0.590403 4_1:+75376018 None:intergenic
TGAGAATGTCAGGAATCTTG+AGG 0.591834 4_1:-75376069 Msa0572480:CDS
AATGCTTTCGACTCGAGTTG+AGG 0.594442 4_1:+75377195 None:intergenic
GATGACAACCTTGAAGAGGA+TGG 0.594910 4_1:-75379299 Msa0572480:CDS
AGATAAAGATCGTTTGTTGG+AGG 0.595739 4_1:-75375694 Msa0572480:CDS
ACACAGCATGATCATCTGAC+AGG 0.595806 4_1:-75379197 Msa0572480:CDS
CCACAAACAGAGCTGCCTGA+TGG 0.597178 4_1:+75375470 None:intergenic
CCAGTTTACTGATCTCATCC+CGG 0.597565 4_1:+75376633 None:intergenic
CAAGATACAAGAAGCAGACA+AGG 0.599113 4_1:-75378913 Msa0572480:CDS
AATGCTTTCAACTCGAGTTG+AGG 0.603109 4_1:+75377981 None:intergenic
GAGTTAAAGAAAAGGATCAA+AGG 0.606217 4_1:-75379173 Msa0572480:CDS
TGAGTCCTCAAATCTTATCA+GGG 0.607053 4_1:-75378346 Msa0572480:CDS
GAAGAAACTCAAAGATAATG+GGG 0.608727 4_1:-75378127 Msa0572480:CDS
AAAGCAAATAAGTGCTAACC+GGG 0.615043 4_1:-75376651 Msa0572480:CDS
GCTCTAAAGTGTTCAACTCG+CGG 0.617860 4_1:+75376693 None:intergenic
CCCTTCGTGGATCTGAGTGA+GGG 0.618747 4_1:+75378377 None:intergenic
ACAAATCACAAATCTGGGGA+TGG 0.618881 4_1:-75378313 Msa0572480:CDS
AACAATAAGCCACAATCTGG+AGG 0.619268 4_1:-75378547 Msa0572480:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.620184 4_1:-75377452 Msa0572480:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.620184 4_1:-75377845 Msa0572480:CDS
ATTAAAGCAAGAACTTGAAG+TGG 0.625206 4_1:-75379027 Msa0572480:CDS
GGAAGATAGCTTTAGAAAGG+CGG 0.626186 4_1:-75375988 Msa0572480:CDS
AATCATATCGAAGACACGCA+GGG 0.626640 4_1:-75375409 Msa0572480:CDS
AATTCAGAGTCTGAAAGAGG+AGG 0.627004 4_1:-75377059 Msa0572480:CDS
CGAGTGTAGTGACTATCTCA+AGG 0.629222 4_1:-75375433 Msa0572480:CDS
GCTAAGAAGTTGGATATCAG+TGG 0.632704 4_1:-75379608 Msa0572480:five_prime_UTR
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 4_1:-75377509 Msa0572480:CDS
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 4_1:-75377902 Msa0572480:CDS
AATTTGAAGATGAAAGATGC+TGG 0.634012 4_1:-75382654 Msa0572480:five_prime_UTR
GCGAGATGAATAGGGTGAAG+GGG 0.634109 4_1:-75375728 Msa0572480:CDS
CCACAATCTGGAGGTTACAG+AGG 0.642292 4_1:-75378538 Msa0572480:CDS
TGATAAGTCAGTGATTGCAA+AGG 0.648880 4_1:-75378640 Msa0572480:CDS
GATAAAGAAGAGCAGCTCCA+GGG 0.649142 4_1:-75379520 Msa0572480:CDS
AGAGGCGAAGGCAAGAAAGG+AGG 0.649964 4_1:-75375616 Msa0572480:CDS
CCCTCACTCAGATCCACGAA+GGG 0.650909 4_1:-75378377 Msa0572480:CDS
GAATTTGAAAACTGATGCTG+AGG 0.656206 4_1:-75378883 Msa0572480:CDS
ACACACAGAAGTCCTCAGAA+TGG 0.656732 4_1:-75376381 Msa0572480:CDS
TGACCTGGAAGTTCAGCTTG+TGG 0.658835 4_1:-75377116 Msa0572480:CDS
AGGAAGAGGAATTAACTCTG+AGG 0.661623 4_1:-75375656 Msa0572480:CDS
GGAAAAGGTTGAGAAGCTAG+AGG 0.669571 4_1:-75375634 Msa0572480:CDS
GATTATTCTTCAAAGGACAG+AGG 0.677313 4_1:-75379098 Msa0572480:CDS
ATGGCAGAAGAGTTTCGTGA+AGG 0.678129 4_1:-75376191 Msa0572480:CDS
AGCTCTCCAACAGATTGGTG+AGG 0.679320 4_1:-75378712 Msa0572480:CDS
ACCCTCACTCAGATCCACGA+AGG 0.680192 4_1:-75378378 Msa0572480:CDS
TGAGATAGTCACTACACTCG+CGG 0.682863 4_1:+75375436 None:intergenic
AAGACAGAGAAAATTTAACC+AGG 0.687147 4_1:-75377000 Msa0572480:CDS
CGTTTGTTGGAGGAACTGCA+GGG 0.687309 4_1:-75375684 Msa0572480:CDS
TCAAACTTGAAGTTGCTGAG+AGG 0.688408 4_1:-75376226 Msa0572480:CDS
ATCATATCGAAGACACGCAG+GGG 0.689585 4_1:-75375408 Msa0572480:CDS
AGACACAAATCACAAATCTG+GGG 0.699067 4_1:-75378317 Msa0572480:CDS
AGACCTGAAAAGAGACCTGG+AGG 0.702321 4_1:-75376120 Msa0572480:CDS
GAAACATGATGAGAAAGACA+GGG 0.703452 4_1:-75378409 Msa0572480:CDS
CTTGGGAGAGGAAAAGAGGG+AGG 0.705635 4_1:-75375493 Msa0572480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCGTAAAATAATAATAA+TGG + chr4_1:75375483-75375502 None:intergenic 10.0%
!! ATTAAAAATAATCTATAAGT+TGG - chr4_1:75376235-75376254 Msa0572480:CDS 10.0%
!!! TATAACAATTATCAATATTT+TGG + chr4_1:75376638-75376657 None:intergenic 10.0%
!! AAATAAAAACATTGAAATAT+GGG + chr4_1:75377280-75377299 None:intergenic 10.0%
!! AAAATAAAAACATTGAAATA+TGG + chr4_1:75377281-75377300 None:intergenic 10.0%
!! ATAATAATTTAATGAAGATA+TGG + chr4_1:75377759-75377778 None:intergenic 10.0%
!!! AATATAAACAAATTGATAAT+TGG - chr4_1:75381807-75381826 Msa0572480:intron 10.0%
!! TGTAAACTTAATTAAACTAT+AGG - chr4_1:75375519-75375538 Msa0572480:CDS 15.0%
!! GAAATGAAAAATTTGAAAAA+CGG + chr4_1:75375660-75375679 None:intergenic 15.0%
!! ACAATAAATAATTCAGATTA+AGG + chr4_1:75375950-75375969 None:intergenic 15.0%
!! TTTATTAATCTTGTAAAAGA+TGG - chr4_1:75375974-75375993 Msa0572480:CDS 15.0%
!! TAAGAAATAAAAATCTAACA+AGG - chr4_1:75376037-75376056 Msa0572480:CDS 15.0%
!!! TTATCAATATTTTGGTAAAT+TGG + chr4_1:75376630-75376649 None:intergenic 15.0%
!!! TTTTTTTTCCATTTTTTTCT+TGG - chr4_1:75376755-75376774 Msa0572480:CDS 15.0%
!! AAAGATTGTATAATTATTTG+GGG + chr4_1:75377257-75377276 None:intergenic 15.0%
!! GAAAGATTGTATAATTATTT+GGG + chr4_1:75377258-75377277 None:intergenic 15.0%
!! TCTTTAGTTATCAATTATAT+AGG + chr4_1:75377527-75377546 None:intergenic 15.0%
!!! ATATAATTGATAACTAAAGA+TGG - chr4_1:75377527-75377546 Msa0572480:CDS 15.0%
!! TTAACATAAGATGATATAAA+TGG + chr4_1:75378174-75378193 None:intergenic 15.0%
!!! GTAATTGTATATTTTTTGAA+TGG + chr4_1:75378225-75378244 None:intergenic 15.0%
!!! AATTATTTTTCTTTTCCTTT+AGG - chr4_1:75378298-75378317 Msa0572480:CDS 15.0%
!!! AATAATAATGGAATGAAAAG+TGG + chr4_1:75375471-75375490 None:intergenic 20.0%
!!! AATAATAGTTGATAAGTTAG+CGG - chr4_1:75376082-75376101 Msa0572480:CDS 20.0%
!!! ATTAAATTAGCTTAGTCAAT+TGG - chr4_1:75376357-75376376 Msa0572480:CDS 20.0%
!!! AATTTTTTCCTTTTCTTTGT+AGG - chr4_1:75376520-75376539 Msa0572480:CDS 20.0%
!! AAAACTTGAAGCAATATTTA+AGG - chr4_1:75376596-75376615 Msa0572480:CDS 20.0%
!!! CGTTTCTTTCTTTTATTTTT+TGG - chr4_1:75376898-75376917 Msa0572480:CDS 20.0%
!! CGTTAATTAATTAAGAGTTT+GGG - chr4_1:75377046-75377065 Msa0572480:CDS 20.0%
!! AAAAAAAGGGAAGAAAAAAA+AGG + chr4_1:75377137-75377156 None:intergenic 20.0%
!! GGAAAGATTGTATAATTATT+TGG + chr4_1:75377259-75377278 None:intergenic 20.0%
!! ATGGAATACATTAATTATCA+AGG - chr4_1:75377546-75377565 Msa0572480:CDS 20.0%
!! TAATTTAATGAAGATATGGA+GGG + chr4_1:75377755-75377774 None:intergenic 20.0%
!! ATAATTTAATGAAGATATGG+AGG + chr4_1:75377756-75377775 None:intergenic 20.0%
!!! ATATAAATGGTTGAGATTTT+AGG + chr4_1:75378161-75378180 None:intergenic 20.0%
!!! TTGTATATTTTTTGAATGGA+TGG + chr4_1:75378221-75378240 None:intergenic 20.0%
!! AAAATGTAAAATAACAGTGT+AGG + chr4_1:75378261-75378280 None:intergenic 20.0%
!! AAATTGAAGACAAAGTTAAA+AGG - chr4_1:75378732-75378751 Msa0572480:CDS 20.0%
!!! GATACAAATATCAAAACTTT+TGG - chr4_1:75379219-75379238 Msa0572480:CDS 20.0%
!! TAAGAATCTTCAACTTAATT+TGG - chr4_1:75381259-75381278 Msa0572480:intron 20.0%
!!! TAATTGGTTTAATGAATACA+AGG - chr4_1:75381823-75381842 Msa0572480:intron 20.0%
! AATTTCATGAATGGAATCTT+TGG + chr4_1:75375402-75375421 None:intergenic 25.0%
! TCATCTTCAAATTTCATGAA+TGG + chr4_1:75375411-75375430 None:intergenic 25.0%
! GATGATAATAAAAACACCAA+AGG + chr4_1:75376436-75376455 None:intergenic 25.0%
! TAACATAATCCCCAATATAT+AGG + chr4_1:75376672-75376691 None:intergenic 25.0%
! ACTACTATCCAAGAAAAAAA+TGG + chr4_1:75376766-75376785 None:intergenic 25.0%
! AATCCGTATAGCTTAAAATT+TGG - chr4_1:75377013-75377032 Msa0572480:CDS 25.0%
! GCGTTAATTAATTAAGAGTT+TGG - chr4_1:75377045-75377064 Msa0572480:CDS 25.0%
! TGGTTTAGTAACAGTAATTA+TGG - chr4_1:75377078-75377097 Msa0572480:CDS 25.0%
!! TGTTTCATATGATGGAAATT+GGG + chr4_1:75377210-75377229 None:intergenic 25.0%
!! ATGTTTCATATGATGGAAAT+TGG + chr4_1:75377211-75377230 None:intergenic 25.0%
! ACTACTAATGTTTCATATGA+TGG + chr4_1:75377218-75377237 None:intergenic 25.0%
!!! ATTTGTTTTGGATAGTTAGT+CGG + chr4_1:75377888-75377907 None:intergenic 25.0%
!!! TATGGTTGTTTGATTTGTTT+TGG + chr4_1:75377900-75377919 None:intergenic 25.0%
!! TTTCGTTAGTAGAGATATTT+TGG + chr4_1:75377942-75377961 None:intergenic 25.0%
! ATATCTCTACTAACGAAATA+TGG - chr4_1:75377944-75377963 Msa0572480:CDS 25.0%
!!! AGTTAAGGTTTAATTTGCTT+TGG + chr4_1:75378125-75378144 None:intergenic 25.0%
!!! GAATCTGTTTTTTTACCTAA+AGG + chr4_1:75378316-75378335 None:intergenic 25.0%
! TATTTGATATTTGAGCAATG+AGG + chr4_1:75378372-75378391 None:intergenic 25.0%
! ATCAATTGTTGATCAACATA+AGG + chr4_1:75378686-75378705 None:intergenic 25.0%
!!! AAATCAATTGGTATTGATTG+TGG + chr4_1:75378853-75378872 None:intergenic 25.0%
! GAGTTTCAAAAGATAATTGA+TGG - chr4_1:75379022-75379041 Msa0572480:CDS 25.0%
! ATCTGAATTAAGTCAGTTAA+AGG - chr4_1:75379639-75379658 Msa0572480:five_prime_UTR 25.0%
!!! TCATTTCAAGTTCTGAAATT+TGG + chr4_1:75379888-75379907 None:intergenic 25.0%
! ATGAAGAAACTCAAAGATAA+TGG - chr4_1:75379943-75379962 Msa0572480:intron 25.0%
! TGAAGAAACTCAAAGATAAT+GGG - chr4_1:75379944-75379963 Msa0572480:intron 25.0%
!! AGATGTCAAATCTGATATTT+TGG + chr4_1:75379983-75380002 None:intergenic 25.0%
! TTGAATTTGAATTGAACACT+CGG + chr4_1:75380214-75380233 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+AGG - chr4_1:75380299-75380318 Msa0572480:intron 25.0%
! ATGATTCATTCTCATTATCT+TGG + chr4_1:75380350-75380369 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+CGG - chr4_1:75380299-75380318 Msa0572480:intron 25.0%
!! AGATGTCAAATCTGATATTT+TGG + chr4_1:75379983-75380002 None:intergenic 25.0%
! ATCTCAGATAGAAAATTTGT+TGG - chr4_1:75380785-75380804 Msa0572480:intron 25.0%
AATTTGAAGATGAAAGATGC+TGG - chr4_1:75375418-75375437 Msa0572480:CDS 30.0%
!!! AAAAGTGGCTTTGTTTTGTT+TGG + chr4_1:75375456-75375475 None:intergenic 30.0%
AAACTTAGAGATAGAGAGTT+AGG + chr4_1:75375587-75375606 None:intergenic 30.0%
GTTGAAAAAGAAGATGATGA+AGG + chr4_1:75375614-75375633 None:intergenic 30.0%
AAAACCATATCCAATTTCTG+CGG + chr4_1:75375896-75375915 None:intergenic 30.0%
TTCTGCTCTTTACTTTACTT+TGG - chr4_1:75376010-75376029 Msa0572480:CDS 30.0%
!! ATAAGTTGGTGAAAAAGTGA+AGG - chr4_1:75376249-75376268 Msa0572480:CDS 30.0%
! CTAGTATTTCTATTTGCCTT+TGG - chr4_1:75376417-75376436 Msa0572480:CDS 30.0%
GCTTAATAGATTCAGAAAAG+AGG - chr4_1:75376565-75376584 Msa0572480:CDS 30.0%
GATTCAGAAAAGAGGATATA+AGG - chr4_1:75376573-75376592 Msa0572480:CDS 30.0%
!! AGAGTATTGAGCCTATATAT+TGG - chr4_1:75376658-75376677 Msa0572480:CDS 30.0%
!! GAGTATTGAGCCTATATATT+GGG - chr4_1:75376659-75376678 Msa0572480:CDS 30.0%
! AGTATTGAGCCTATATATTG+GGG - chr4_1:75376660-75376679 Msa0572480:CDS 30.0%
!!! CAAGATGCACTTATTTTTGA+AGG + chr4_1:75376961-75376980 None:intergenic 30.0%
! GGTCCAAATTTTAAGCTATA+CGG + chr4_1:75377019-75377038 None:intergenic 30.0%
TTAATTAATTAACGCACCAC+TGG + chr4_1:75377040-75377059 None:intergenic 30.0%
ACTGTTACTAAACCAAAATG+TGG + chr4_1:75377073-75377092 None:intergenic 30.0%
TGTCAAAAAGATACTAGATG+CGG + chr4_1:75377107-75377126 None:intergenic 30.0%
CGGATTATATGTGATTAACT+GGG + chr4_1:75377179-75377198 None:intergenic 30.0%
! ACGGATTATATGTGATTAAC+TGG + chr4_1:75377180-75377199 None:intergenic 30.0%
AGATAGCAAACAATACAAAG+AGG - chr4_1:75377380-75377399 Msa0572480:CDS 30.0%
!! TCATGATTGTTTGGTTTGAT+TGG + chr4_1:75377423-75377442 None:intergenic 30.0%
!! TCAATTATATAGGCTCTGAA+GGG + chr4_1:75377517-75377536 None:intergenic 30.0%
! ATCAATTATATAGGCTCTGA+AGG + chr4_1:75377518-75377537 None:intergenic 30.0%
! AATTGGAGTTTTCATTATGC+AGG + chr4_1:75377844-75377863 None:intergenic 30.0%
AATGTTTGTTCAGTCTGAAT+TGG + chr4_1:75377861-75377880 None:intergenic 30.0%
AATTAAGAACCTGAGAGTTA+TGG + chr4_1:75377918-75377937 None:intergenic 30.0%
CAGATTAGATGATGTTATGT+TGG + chr4_1:75378068-75378087 None:intergenic 30.0%
AAAGAGCTATCTTAAGATCA+TGG + chr4_1:75378094-75378113 None:intergenic 30.0%
! CTTAAGATAGCTCTTTTGAT+AGG - chr4_1:75378098-75378117 Msa0572480:CDS 30.0%
ACTTGATATTGCTAAGAAGT+TGG - chr4_1:75378454-75378473 Msa0572480:CDS 30.0%
GAGTTAAAGAAAAGGATCAA+AGG - chr4_1:75378899-75378918 Msa0572480:CDS 30.0%
ATTAAAGCAAGAACTTGAAG+TGG - chr4_1:75379045-75379064 Msa0572480:CDS 30.0%
TACTGAACTAAATAAGCAAC+TGG - chr4_1:75379249-75379268 Msa0572480:CDS 30.0%
AAACCTAGTTGATCAATTGA+AGG - chr4_1:75379408-75379427 Msa0572480:intron 30.0%
GCAAAACGAGAAAAAAGATA+TGG - chr4_1:75379795-75379814 Msa0572480:intron 30.0%
AAACGAGAAAAAAGATATGG+AGG - chr4_1:75379798-75379817 Msa0572480:intron 30.0%
GAAGAAACTCAAAGATAATG+GGG - chr4_1:75379945-75379964 Msa0572480:intron 30.0%
TCAAATTCAAAGTCTGAAAG+AGG - chr4_1:75380224-75380243 Msa0572480:intron 30.0%
ATCTCAGATAGACAATTTGT+TGG - chr4_1:75380392-75380411 Msa0572480:intron 30.0%
! TTGAACACTCTGAATTTTCT+TGG + chr4_1:75380596-75380615 None:intergenic 30.0%
TCAAATTCAAAGTCTGAAAG+AGG - chr4_1:75380224-75380243 Msa0572480:intron 30.0%
CTGAATTTGAATTGAACACT+CGG + chr4_1:75381000-75381019 None:intergenic 30.0%
AAGACAGAGAAAATTTAACC+AGG - chr4_1:75381072-75381091 Msa0572480:intron 30.0%
!!! TTTGCTATTTTTGCTCTTGA+TGG + chr4_1:75381129-75381148 None:intergenic 30.0%
TCTCCAGGATAAAATTCATA+TGG - chr4_1:75381190-75381209 Msa0572480:intron 30.0%
!! ATTCTTAATTTGCTCACCAA+AGG + chr4_1:75381246-75381265 None:intergenic 30.0%
AGCAGACAAAATAGATCATT+CGG - chr4_1:75381481-75381500 Msa0572480:five_prime_UTR 30.0%
GCTTCAGGATAAACTTTATA+AGG - chr4_1:75381541-75381560 Msa0572480:intron 30.0%
!! TCAAGTTGACAATCTGAAAA+AGG - chr4_1:75381604-75381623 Msa0572480:intron 30.0%
!!! TTCTTCTTTTGTTTTCTGCA+AGG + chr4_1:75381639-75381658 None:intergenic 30.0%
GCAGAAAACAAAAGAAGAAT+TGG - chr4_1:75381640-75381659 Msa0572480:intron 30.0%
TGAATTAGCCAACAAAAACA+TGG - chr4_1:75381730-75381749 Msa0572480:intron 30.0%
AGAACAATTGCTAAGTGAAA+AGG - chr4_1:75382063-75382082 Msa0572480:intron 30.0%
!! AAAGGAAGATAGCTTTAGAA+AGG - chr4_1:75382081-75382100 Msa0572480:intron 30.0%
ATGAAAAGCTTCATTGTTAG+CGG + chr4_1:75382176-75382195 None:intergenic 30.0%
TGTTGTTGAACTTAAGAAGA+CGG - chr4_1:75382507-75382526 Msa0572480:five_prime_UTR 30.0%
!!! TTCTTTTTCAACTCTCACAG+AGG - chr4_1:75375622-75375641 Msa0572480:CDS 35.0%
TGAAGTGAAAACGAAGAAGA+AGG + chr4_1:75375682-75375701 None:intergenic 35.0%
!!! GCTCTTTAGTTTTCAGCTTT+TGG - chr4_1:75375754-75375773 Msa0572480:CDS 35.0%
TTTGTATACTCCGCAGAAAT+TGG - chr4_1:75375883-75375902 Msa0572480:CDS 35.0%
CAGATTAAGGATCAAGATAC+AGG + chr4_1:75375937-75375956 None:intergenic 35.0%
AGCGGAAAAACTTATACTAG+TGG - chr4_1:75376100-75376119 Msa0572480:CDS 35.0%
ATATACTGATACTGAGTAGC+AGG + chr4_1:75376396-75376415 None:intergenic 35.0%
ATTCTTGAAAGTTGTTGTCG+TGG - chr4_1:75376836-75376855 Msa0572480:CDS 35.0%
CACGATTCTATTACTGAGAA+CGG + chr4_1:75376990-75377009 None:intergenic 35.0%
TAGCTTAAAATTTGGACCAG+TGG - chr4_1:75377021-75377040 Msa0572480:CDS 35.0%
ATGGAAATTGGGTTCAGTTA+CGG + chr4_1:75377199-75377218 None:intergenic 35.0%
! ATTTGGGGTTTATTCGAACA+AGG + chr4_1:75377242-75377261 None:intergenic 35.0%
TTAAAAAACTCCACATGCAC+AGG - chr4_1:75377342-75377361 Msa0572480:CDS 35.0%
AGGTTGTGTTCATGATTGTT+TGG + chr4_1:75377432-75377451 None:intergenic 35.0%
!! CAATTATATAGGCTCTGAAG+GGG + chr4_1:75377516-75377535 None:intergenic 35.0%
ATTAGAATGCTATGAGGCTT+GGG + chr4_1:75377597-75377616 None:intergenic 35.0%
CAACAGATTAGAATGCTATG+AGG + chr4_1:75377603-75377622 None:intergenic 35.0%
!! GTTATACTTGGCTTGCAAAA+TGG + chr4_1:75377641-75377660 None:intergenic 35.0%
! TGCAGTATAGGTGTTATACT+TGG + chr4_1:75377653-75377672 None:intergenic 35.0%
TTTCCTAAAGTGAAGTACAC+TGG + chr4_1:75377708-75377727 None:intergenic 35.0%
! TTCACTTTAGGAAACCAAAC+AGG - chr4_1:75377714-75377733 Msa0572480:CDS 35.0%
!! ATATGGAGGGATTGTTGTTT+GGG + chr4_1:75377742-75377761 None:intergenic 35.0%
GTGGAGAAAACATGTATCAT+CGG + chr4_1:75377784-75377803 None:intergenic 35.0%
!! TTCATTATGCAGGTTGGTTT+GGG + chr4_1:75377834-75377853 None:intergenic 35.0%
!! TTTCATTATGCAGGTTGGTT+TGG + chr4_1:75377835-75377854 None:intergenic 35.0%
ATCAAACAACCATAACTCTC+AGG - chr4_1:75377906-75377925 Msa0572480:CDS 35.0%
AGCTATATGGATAGAAGTGA+GGG + chr4_1:75377986-75378005 None:intergenic 35.0%
ATATCATTTCAGCTGTCATG+GGG + chr4_1:75378618-75378637 None:intergenic 35.0%
GATATCATTTCAGCTGTCAT+GGG + chr4_1:75378619-75378638 None:intergenic 35.0%
TGATATCATTTCAGCTGTCA+TGG + chr4_1:75378620-75378639 None:intergenic 35.0%
TGACAGCTGAAATGATATCA+TGG - chr4_1:75378620-75378639 Msa0572480:CDS 35.0%
TGATATCATGGAAGATCACT+AGG - chr4_1:75378632-75378651 Msa0572480:CDS 35.0%
TAAAGATGACAACCTTGAAG+AGG - chr4_1:75378769-75378788 Msa0572480:CDS 35.0%
!! CTCAGCAGAAATTTTGAAGA+GGG - chr4_1:75378799-75378818 Msa0572480:CDS 35.0%
CATGCTGTGTGTAAATCAAT+TGG + chr4_1:75378865-75378884 None:intergenic 35.0%
TGACAGGTGAGTTAAAGAAA+AGG - chr4_1:75378891-75378910 Msa0572480:CDS 35.0%
GGATTCGGATTATTCTTCAA+AGG - chr4_1:75378967-75378986 Msa0572480:CDS 35.0%
GATTATTCTTCAAAGGACAG+AGG - chr4_1:75378974-75378993 Msa0572480:CDS 35.0%
GAATTTGAAAACTGATGCTG+AGG - chr4_1:75379189-75379208 Msa0572480:CDS 35.0%
AGCTGAACTGAGTCAAAAAT+TGG - chr4_1:75379291-75379310 Msa0572480:CDS 35.0%
TGAACTGAGTCAAAAATTGG+AGG - chr4_1:75379294-75379313 Msa0572480:CDS 35.0%
GAAGACAGAAAACAATAGCT+TGG - chr4_1:75379321-75379340 Msa0572480:CDS 35.0%
ATTGATCAACTAGGTTTCTC+AGG + chr4_1:75379405-75379424 None:intergenic 35.0%
CATCCTTCAATTGATCAACT+AGG + chr4_1:75379414-75379433 None:intergenic 35.0%
TGATAAGTCAGTGATTGCAA+AGG - chr4_1:75379432-75379451 Msa0572480:intron 35.0%
AACAACAATAAGCCACAATC+TGG - chr4_1:75379522-75379541 Msa0572480:CDS 35.0%
AGAAACATGATGAGAAAGAC+AGG - chr4_1:75379662-75379681 Msa0572480:five_prime_UTR 35.0%
GAAACATGATGAGAAAGACA+GGG - chr4_1:75379663-75379682 Msa0572480:five_prime_UTR 35.0%
ATGAGTCCTCAAATCTTATC+AGG - chr4_1:75379725-75379744 Msa0572480:intron 35.0%
TGAGTCCTCAAATCTTATCA+GGG - chr4_1:75379726-75379745 Msa0572480:intron 35.0%
TAGTTCCCTGATAAGATTTG+AGG + chr4_1:75379734-75379753 None:intergenic 35.0%
AGAGACACAAATCACAAATC+TGG - chr4_1:75379753-75379772 Msa0572480:intron 35.0%
GAGACACAAATCACAAATCT+GGG - chr4_1:75379754-75379773 Msa0572480:intron 35.0%
AGACACAAATCACAAATCTG+GGG - chr4_1:75379755-75379774 Msa0572480:intron 35.0%
!!! TTCCAGTTCTCTTTTTTCAG+TGG + chr4_1:75379842-75379861 None:intergenic 35.0%
TAGTTCCTCTTCTCTTTCTT+TGG + chr4_1:75379914-75379933 None:intergenic 35.0%
! TTGAACACTCGGAATTTTCT+TGG + chr4_1:75380203-75380222 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG - chr4_1:75380227-75380246 Msa0572480:intron 35.0%
TATAAGTCTCTCTTGTTCCA+GGG + chr4_1:75380265-75380284 None:intergenic 35.0%
ACATGCTCAGAAAAATGAAC+TGG - chr4_1:75380431-75380450 Msa0572480:intron 35.0%
! AATGCTTTCGACTTGATTTG+AGG + chr4_1:75380487-75380506 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG - chr4_1:75380227-75380246 Msa0572480:intron 35.0%
ACATGCTCAGAAAAATGAAC+TGG - chr4_1:75380431-75380450 Msa0572480:intron 35.0%
! TTGAACACTCGGAATTTTCT+TGG + chr4_1:75380203-75380222 None:intergenic 35.0%
TCAAATTCAGAGTCTGAAAG+AGG - chr4_1:75381010-75381029 Msa0572480:intron 35.0%
GCAAAGATGAAGAGCAAATA+AGG - chr4_1:75381144-75381163 Msa0572480:intron 35.0%
! CTGCCATATGAATTTTATCC+TGG + chr4_1:75381196-75381215 None:intergenic 35.0%
ATTCATATGGCAGAGATAGA+AGG - chr4_1:75381203-75381222 Msa0572480:intron 35.0%
! TCTTCAACTTAATTTGGCAC+AGG - chr4_1:75381265-75381284 Msa0572480:intron 35.0%
CAAAGCAAATAAGTGCTAAC+CGG - chr4_1:75381420-75381439 Msa0572480:intron 35.0%
AAAGCAAATAAGTGCTAACC+GGG - chr4_1:75381421-75381440 Msa0572480:intron 35.0%
TAAACTGGCACAGGAAAATT+TGG - chr4_1:75381454-75381473 Msa0572480:intron 35.0%
AAAATAGATCATTCGGAGAG+AGG - chr4_1:75381488-75381507 Msa0572480:five_prime_UTR 35.0%
GGATAAACTTTATAAGGCAG+AGG - chr4_1:75381547-75381566 Msa0572480:intron 35.0%
TTTCATTGTCAACCATTCTG+AGG + chr4_1:75381706-75381725 None:intergenic 35.0%
!! CTGAAGATCCATGTTTTTGT+TGG + chr4_1:75381741-75381760 None:intergenic 35.0%
TGAGAGGAAAATGGAAGAAA+TGG - chr4_1:75381862-75381881 Msa0572480:intron 35.0%
AGATCAGATGGTAACTGATT+TGG - chr4_1:75381916-75381935 Msa0572480:intron 35.0%
TTAGCAATTGTTCTGTAACC+CGG + chr4_1:75382057-75382076 None:intergenic 35.0%
! CTCATGATTTTTGCTTTCGT+CGG + chr4_1:75382272-75382291 None:intergenic 35.0%
GAGAGATAAAGATCGTTTGT+TGG - chr4_1:75382375-75382394 Msa0572480:intron 35.0%
! AGATAAAGATCGTTTGTTGG+AGG - chr4_1:75382378-75382397 Msa0572480:intron 35.0%
!! GAAGTTGATGAAAGAGAAAG+AGG - chr4_1:75382543-75382562 Msa0572480:five_prime_UTR 35.0%
TTGATGAAAGAGAAAGAGGA+AGG - chr4_1:75382547-75382566 Msa0572480:five_prime_UTR 35.0%
AGAGATAGAGAGTTAGGAAG+AGG + chr4_1:75375581-75375600 None:intergenic 40.0%
TACTCCGCAGAAATTGGATA+TGG - chr4_1:75375889-75375908 Msa0572480:CDS 40.0%
TGCAGCAACCTACAAAGAAA+AGG + chr4_1:75376531-75376550 None:intergenic 40.0%
!! AAGAGTTTGGGACCACATTT+TGG - chr4_1:75377058-75377077 Msa0572480:CDS 40.0%
GATTAGAATGCTATGAGGCT+TGG + chr4_1:75377598-75377617 None:intergenic 40.0%
CTATTGGATGGTTGCAGTAT+AGG + chr4_1:75377665-75377684 None:intergenic 40.0%
ATACTGCAACCATCCAATAG+AGG - chr4_1:75377665-75377684 Msa0572480:CDS 40.0%
CAACCAGTGTACTTCACTTT+AGG - chr4_1:75377702-75377721 Msa0572480:CDS 40.0%
! GATATGGAGGGATTGTTGTT+TGG + chr4_1:75377743-75377762 None:intergenic 40.0%
! GTAGAGGTGTAATTCTTGTG+TGG + chr4_1:75377803-75377822 None:intergenic 40.0%
! GGAGTTTTCATTATGCAGGT+TGG + chr4_1:75377840-75377859 None:intergenic 40.0%
CAGCTATATGGATAGAAGTG+AGG + chr4_1:75377987-75378006 None:intergenic 40.0%
!! AGGTGTTGTTTGCAGCTATA+TGG + chr4_1:75377999-75378018 None:intergenic 40.0%
AACCTTAACTGAGATGATGC+AGG - chr4_1:75378135-75378154 Msa0572480:CDS 40.0%
! ATTTTCAGCTCTTCACTTCC+TGG - chr4_1:75378403-75378422 Msa0572480:CDS 40.0%
TTCACTTCCTGGAATCTACA+TGG - chr4_1:75378414-75378433 Msa0572480:CDS 40.0%
TTGTTCACCATGTAGATTCC+AGG + chr4_1:75378424-75378443 None:intergenic 40.0%
GCTAAGAAGTTGGATATCAG+TGG - chr4_1:75378464-75378483 Msa0572480:CDS 40.0%
TTGGATATCAGTGGAGAAGA+TGG - chr4_1:75378473-75378492 Msa0572480:CDS 40.0%
CCTCTTCAAAATTTCTGCTG+AGG + chr4_1:75378801-75378820 None:intergenic 40.0%
!! CCTCAGCAGAAATTTTGAAG+AGG - chr4_1:75378798-75378817 Msa0572480:CDS 40.0%
TCCTCAATCAATTCAGCAAG+CGG + chr4_1:75378827-75378846 None:intergenic 40.0%
ATCAAAGGCAAGCGAGAAAA+AGG - chr4_1:75378914-75378933 Msa0572480:CDS 40.0%
! ATCCAGCTCTGATTCAGATT+CGG - chr4_1:75378946-75378965 Msa0572480:CDS 40.0%
CTCTGATTCAGATTCGGATT+CGG - chr4_1:75378952-75378971 Msa0572480:CDS 40.0%
GACAGTTACACATGAAGAGA+AGG - chr4_1:75379102-75379121 Msa0572480:CDS 40.0%
CTTGTCTGCTTCTTGTATCT+TGG + chr4_1:75379161-75379180 None:intergenic 40.0%
CAAGATACAAGAAGCAGACA+AGG - chr4_1:75379159-75379178 Msa0572480:CDS 40.0%
AATAAGCAACTGGACATTGC+TGG - chr4_1:75379259-75379278 Msa0572480:CDS 40.0%
AGAAAACAATAGCTTGGCCA+TGG - chr4_1:75379327-75379346 Msa0572480:CDS 40.0%
AACAATAAGCCACAATCTGG+AGG - chr4_1:75379525-75379544 Msa0572480:CDS 40.0%
ACAAATCACAAATCTGGGGA+TGG - chr4_1:75379759-75379778 Msa0572480:intron 40.0%
CACCACTGAAAAAAGAGAAC+TGG - chr4_1:75379837-75379856 Msa0572480:intron 40.0%
GAAGTCCAAAGAAAGAGAAG+AGG - chr4_1:75379906-75379925 Msa0572480:intron 40.0%
ACATGCTCAGAAAACTGAAC+TGG - chr4_1:75380038-75380057 Msa0572480:intron 40.0%
! AATGCTTTCAACTCGAGTTG+AGG + chr4_1:75380094-75380113 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG - chr4_1:75380155-75380174 Msa0572480:intron 40.0%
GAACTTCCAAGTCAGATTTC+TGG + chr4_1:75380164-75380183 None:intergenic 40.0%
CTATAAGTCTCTCTTGTTCC+AGG + chr4_1:75380266-75380285 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG - chr4_1:75380155-75380174 Msa0572480:intron 40.0%
GAACTTCCAAGTCAGATTTC+TGG + chr4_1:75380164-75380183 None:intergenic 40.0%
CATAAGTCTCTCTTGTTCCA+GGG + chr4_1:75380658-75380677 None:intergenic 40.0%
AATTCAGAGTCTGAAAGAGG+AGG - chr4_1:75381013-75381032 Msa0572480:intron 40.0%
CATAAGTCTCTCTTGTTCCA+GGG + chr4_1:75380658-75380677 None:intergenic 40.0%
AACCAGGCAGATAAAGAATC+TGG - chr4_1:75381088-75381107 Msa0572480:intron 40.0%
TTCCAGATTCTTTATCTGCC+TGG + chr4_1:75381093-75381112 None:intergenic 40.0%
! GCAGATAAAGAATCTGGAAC+TGG - chr4_1:75381094-75381113 Msa0572480:intron 40.0%
ATGATTGATCACTTGGACGT+TGG + chr4_1:75381171-75381190 None:intergenic 40.0%
TCAACCCAAATAGTTGCCTT+TGG - chr4_1:75381227-75381246 Msa0572480:intron 40.0%
CTCACCAAAGGCAACTATTT+GGG + chr4_1:75381234-75381253 None:intergenic 40.0%
CAAAAAAATGGAGTTGGAGC+TGG - chr4_1:75381304-75381323 Msa0572480:intron 40.0%
ACTTTATAAGGCAGAGGAAG+AGG - chr4_1:75381553-75381572 Msa0572480:intron 40.0%
ATTGTCAACTTGAGCTGTGA+AGG + chr4_1:75381597-75381616 None:intergenic 40.0%
CATGGATCTTCAGAGAACAT+TGG - chr4_1:75381748-75381767 Msa0572480:intron 40.0%
TCAAACTTGAAGTTGCTGAG+AGG - chr4_1:75381846-75381865 Msa0572480:intron 40.0%
TGAAGTTGCTGAGAGGAAAA+TGG - chr4_1:75381853-75381872 Msa0572480:intron 40.0%
!! AAGAGTTTCGTGAAGGCATT+GGG - chr4_1:75381888-75381907 Msa0572480:intron 40.0%
CATTGGGTCAAAAGATCAGA+TGG - chr4_1:75381904-75381923 Msa0572480:intron 40.0%
! GCACTTTGTTTGAGAATGTC+AGG - chr4_1:75381993-75382012 Msa0572480:intron 40.0%
TGAGAATGTCAGGAATCTTG+AGG - chr4_1:75382003-75382022 Msa0572480:intron 40.0%
!! GGAAGATAGCTTTAGAAAGG+CGG - chr4_1:75382084-75382103 Msa0572480:intron 40.0%
TTCAGAGAGAACTTGAAGAC+AGG - chr4_1:75382125-75382144 Msa0572480:intron 40.0%
TGTGTCAACAGTGTGATATC+TGG - chr4_1:75382220-75382239 Msa0572480:intron 40.0%
GTGTCAACAGTGTGATATCT+GGG - chr4_1:75382221-75382240 Msa0572480:intron 40.0%
! TTTTGCAACCTGAAGCTCAT+GGG + chr4_1:75382314-75382333 None:intergenic 40.0%
AATCTGTCAGCGAGATGAAT+AGG - chr4_1:75382335-75382354 Msa0572480:five_prime_UTR 40.0%
ATCTGTCAGCGAGATGAATA+GGG - chr4_1:75382336-75382355 Msa0572480:five_prime_UTR 40.0%
AGGAAGAGGAATTAACTCTG+AGG - chr4_1:75382416-75382435 Msa0572480:intron 40.0%
GGAAGAGGAATTAACTCTGA+GGG - chr4_1:75382417-75382436 Msa0572480:intron 40.0%
! GGAATTAACTCTGAGGGAAA+AGG - chr4_1:75382423-75382442 Msa0572480:intron 40.0%
TGAACTTAAGAAGACGGTTG+AGG - chr4_1:75382513-75382532 Msa0572480:five_prime_UTR 40.0%
AAATCATATCGAAGACACGC+AGG - chr4_1:75382662-75382681 Msa0572480:five_prime_UTR 40.0%
AATCATATCGAAGACACGCA+GGG - chr4_1:75382663-75382682 Msa0572480:five_prime_UTR 40.0%
CTTGAAAGTTGTTGTCGTGG+CGG - chr4_1:75376839-75376858 Msa0572480:CDS 45.0%
CTGTAGCTGAGTTGTAGTCT+TGG - chr4_1:75376866-75376885 Msa0572480:CDS 45.0%
TAGCGCAAACACATGTTGCA+GGG + chr4_1:75377304-75377323 None:intergenic 45.0%
ATAGCGCAAACACATGTTGC+AGG + chr4_1:75377305-75377324 None:intergenic 45.0%
! AGTTTGGCAGTGTGGCTTTT+AGG + chr4_1:75377452-75377471 None:intergenic 45.0%
GGTTGATTGCCTCTATTGGA+TGG + chr4_1:75377677-75377696 None:intergenic 45.0%
! GAGAGGTTGATTGCCTCTAT+TGG + chr4_1:75377681-75377700 None:intergenic 45.0%
! TGAAGTACACTGGTTGTGAG+AGG + chr4_1:75377698-75377717 None:intergenic 45.0%
!! TTGTTGTTTGGGCTCCTGTT+TGG + chr4_1:75377731-75377750 None:intergenic 45.0%
TAATTGGGAAGGCTGTGTCA+AGG + chr4_1:75378019-75378038 None:intergenic 45.0%
CTGGCTGGAAATAATTGGGA+AGG + chr4_1:75378030-75378049 None:intergenic 45.0%
!! CGTGCTGGCTGGAAATAATT+GGG + chr4_1:75378034-75378053 None:intergenic 45.0%
!! TCGTGCTGGCTGGAAATAAT+TGG + chr4_1:75378035-75378054 None:intergenic 45.0%
GGAGCTGCTCTTCTTTATCA+GGG + chr4_1:75378551-75378570 None:intergenic 45.0%
TGGAGCTGCTCTTCTTTATC+AGG + chr4_1:75378552-75378571 None:intergenic 45.0%
TGATAAAGAAGAGCAGCTCC+AGG - chr4_1:75378551-75378570 Msa0572480:CDS 45.0%
GATAAAGAAGAGCAGCTCCA+GGG - chr4_1:75378552-75378571 Msa0572480:CDS 45.0%
GATGACAACCTTGAAGAGGA+TGG - chr4_1:75378773-75378792 Msa0572480:CDS 45.0%
! ACCGCTTGCTGAATTGATTG+AGG - chr4_1:75378823-75378842 Msa0572480:CDS 45.0%
ACACAGCATGATCATCTGAC+AGG - chr4_1:75378875-75378894 Msa0572480:CDS 45.0%
ATCCGAATCTGAATCAGAGC+TGG + chr4_1:75378951-75378970 None:intergenic 45.0%
AAGGACAGAGGCAGCAAAAA+TGG - chr4_1:75378986-75379005 Msa0572480:CDS 45.0%
AGAACTTGAAGTGGCGCATA+AGG - chr4_1:75379054-75379073 Msa0572480:CDS 45.0%
GTATCTTGGTCAATGCTGCA+AGG + chr4_1:75379147-75379166 None:intergenic 45.0%
TCCAACAGATTGGTGAGGAA+AGG - chr4_1:75379365-75379384 Msa0572480:intron 45.0%
TCCTTTCCTCACCAATCTGT+TGG + chr4_1:75379369-75379388 None:intergenic 45.0%
GCTGTCTCAGAACAGAATAC+AGG - chr4_1:75379609-75379628 Msa0572480:five_prime_UTR 45.0%
ACTCATTCTTATGCCCTTCG+TGG + chr4_1:75379711-75379730 None:intergenic 45.0%
! GAACTGGAAGAGCGCAATTT+AGG - chr4_1:75379853-75379872 Msa0572480:intron 45.0%
TGAGCTGAATGTATTGCAGC+AGG - chr4_1:75380119-75380138 Msa0572480:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - chr4_1:75380125-75380144 Msa0572480:intron 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG - chr4_1:75380170-75380189 Msa0572480:intron 45.0%
TGAGCTGAATGTATTGCAGC+AGG - chr4_1:75380119-75380138 Msa0572480:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - chr4_1:75380125-75380144 Msa0572480:intron 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG - chr4_1:75380170-75380189 Msa0572480:intron 45.0%
CAAAGTCTGAAAGAGGAGGT+TGG - chr4_1:75380231-75380250 Msa0572480:intron 45.0%
CCATAAGTCTCTCTTGTTCC+AGG + chr4_1:75380659-75380678 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG - chr4_1:75380263-75380282 Msa0572480:intron 45.0%
! AATGCTTTCGACTCGAGTTG+AGG + chr4_1:75380880-75380899 None:intergenic 45.0%
TGAGCTGAATGTATTGCAGC+AGG - chr4_1:75380119-75380138 Msa0572480:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - chr4_1:75380125-75380144 Msa0572480:intron 45.0%
GAACTTCCAGGTCAGATTTC+TGG + chr4_1:75380950-75380969 None:intergenic 45.0%
TTTCCACAAGCTGAACTTCC+AGG + chr4_1:75380176-75380195 None:intergenic 45.0%
CCATAAGTCTCTCTTGTTCC+AGG + chr4_1:75380659-75380678 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG - chr4_1:75380263-75380282 Msa0572480:intron 45.0%
CCTGGAGATGATTGATCACT+TGG + chr4_1:75381178-75381197 None:intergenic 45.0%
CCAAGTGATCAATCATCTCC+AGG - chr4_1:75381175-75381194 Msa0572480:intron 45.0%
GCTCACCAAAGGCAACTATT+TGG + chr4_1:75381235-75381254 None:intergenic 45.0%
GCAGCGCAAAAAAATGGAGT+TGG - chr4_1:75381298-75381317 Msa0572480:intron 45.0%
GCTCTTCAACTTCACTCTTC+TGG + chr4_1:75381343-75381362 None:intergenic 45.0%
!! GCTCTAAAGTGTTCAACTCG+CGG + chr4_1:75381382-75381401 None:intergenic 45.0%
CCAGTTTACTGATCTCATCC+CGG + chr4_1:75381442-75381461 None:intergenic 45.0%
TGAGATCAGTAAACTGGCAC+AGG - chr4_1:75381445-75381464 Msa0572480:intron 45.0%
! ATTTGAGTTCTCTGCGCTTC+AGG - chr4_1:75381526-75381545 Msa0572480:five_prime_UTR 45.0%
ACACACAGAAGTCCTCAGAA+TGG - chr4_1:75381691-75381710 Msa0572480:intron 45.0%
ATGGCAGAAGAGTTTCGTGA+AGG - chr4_1:75381881-75381900 Msa0572480:intron 45.0%
! GAAGAGTTTCGTGAAGGCAT+TGG - chr4_1:75381887-75381906 Msa0572480:intron 45.0%
TGAAGACCTGAAAAGAGACC+TGG - chr4_1:75381949-75381968 Msa0572480:intron 45.0%
AAAAGAGACCTGGAGGAGAA+AGG - chr4_1:75381959-75381978 Msa0572480:intron 45.0%
TGAAGACAGGATTGCTACTC+TGG - chr4_1:75382138-75382157 Msa0572480:intron 45.0%
AAACATCTCCCATGAGCTTC+AGG - chr4_1:75382303-75382322 Msa0572480:five_prime_UTR 45.0%
! CTTTTGCAACCTGAAGCTCA+TGG + chr4_1:75382315-75382334 None:intergenic 45.0%
AGCGAGATGAATAGGGTGAA+GGG - chr4_1:75382343-75382362 Msa0572480:intron 45.0%
ACTGCAGGGTAAAAAGGAAG+AGG - chr4_1:75382402-75382421 Msa0572480:intron 45.0%
GGAAAAGGTTGAGAAGCTAG+AGG - chr4_1:75382438-75382457 Msa0572480:intron 45.0%
! AGAGAAAGAGGAAGGCATGT+TGG - chr4_1:75382555-75382574 Msa0572480:five_prime_UTR 45.0%
TGAGATAGTCACTACACTCG+CGG + chr4_1:75382639-75382658 None:intergenic 45.0%
CGAGTGTAGTGACTATCTCA+AGG - chr4_1:75382639-75382658 Msa0572480:five_prime_UTR 45.0%
ATCATATCGAAGACACGCAG+GGG - chr4_1:75382664-75382683 Msa0572480:five_prime_UTR 45.0%
!! AAATACAAAAAAAAAAAAAA+GGG + chr4_1:75377150-75377169 None:intergenic 5.0%
!! AAAATACAAAAAAAAAAAAA+AGG + chr4_1:75377151-75377170 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGTATTTT+AGG - chr4_1:75377151-75377170 Msa0572480:CDS 5.0%
!!! TTTTTTTTTTTTGTATTTTA+GGG - chr4_1:75377152-75377171 Msa0572480:CDS 5.0%
TTGTGCACATCCTGTGCATG+TGG + chr4_1:75377355-75377374 None:intergenic 50.0%
ATGCACAGGATGTGCACAAG+TGG - chr4_1:75377356-75377375 Msa0572480:CDS 50.0%
CTGCCAAACTGTGCAGGAAT+TGG - chr4_1:75377462-75377481 Msa0572480:CDS 50.0%
GTGCCAATTCCTGCACAGTT+TGG + chr4_1:75377468-75377487 None:intergenic 50.0%
GGTTTGGGAGATTGCAGTAG+AGG + chr4_1:75377819-75377838 None:intergenic 50.0%
TTGGTTGTGTCTCATCGTGC+TGG + chr4_1:75378049-75378068 None:intergenic 50.0%
GGCCTGCATCATCTCAGTTA+AGG + chr4_1:75378140-75378159 None:intergenic 50.0%
!!! TCGTACCTGTTTTAGCTCCC+TGG + chr4_1:75378572-75378591 None:intergenic 50.0%
CATGGGGCAGAGTGTAATTG+TGG + chr4_1:75378602-75378621 None:intergenic 50.0%
! CTGAGGTACCATCCTCTTCA+AGG + chr4_1:75378784-75378803 None:intergenic 50.0%
GAGAGCTGTCTCTTTCTCCA+TGG + chr4_1:75379347-75379366 None:intergenic 50.0%
GAGACAGCTCTCCAACAGAT+TGG - chr4_1:75379355-75379374 Msa0572480:intron 50.0%
AGCTCTCCAACAGATTGGTG+AGG - chr4_1:75379360-75379379 Msa0572480:intron 50.0%
CCTCTGTAACCTCCAGATTG+TGG + chr4_1:75379537-75379556 None:intergenic 50.0%
CCACAATCTGGAGGTTACAG+AGG - chr4_1:75379534-75379553 Msa0572480:CDS 50.0%
GGAGGTTGACAGAAAATCCC+TGG - chr4_1:75380245-75380264 Msa0572480:intron 50.0%
ACGACACCAGAAATCTGACC+TGG - chr4_1:75380941-75380960 Msa0572480:intron 50.0%
TGACCTGGAAGTTCAGCTTG+TGG - chr4_1:75380956-75380975 Msa0572480:intron 50.0%
GGAGGTTGACAGAAAATCCC+TGG - chr4_1:75380245-75380264 Msa0572480:intron 50.0%
AGCGCAGCAGCGCAAAAAAA+TGG - chr4_1:75381292-75381311 Msa0572480:intron 50.0%
! TTCACTCTTCTGGCTGCGTA+TGG + chr4_1:75381333-75381352 None:intergenic 50.0%
AGTGTTCAACTCGCGGTCTT+TGG + chr4_1:75381375-75381394 None:intergenic 50.0%
CCGGGATGAGATCAGTAAAC+TGG - chr4_1:75381439-75381458 Msa0572480:intron 50.0%
AGACCTGAAAAGAGACCTGG+AGG - chr4_1:75381952-75381971 Msa0572480:intron 50.0%
! TCTCCTCCAGGTCTCTTTTC+AGG + chr4_1:75381958-75381977 None:intergenic 50.0%
CTTCATCTCCTTTCTCCTCC+AGG + chr4_1:75381970-75381989 None:intergenic 50.0%
GCCTGTCAAACCAAAAGCTC+CGG - chr4_1:75382035-75382054 Msa0572480:intron 50.0%
CCTGTCAAACCAAAAGCTCC+GGG - chr4_1:75382036-75382055 Msa0572480:intron 50.0%
! GTTCTGTAACCCGGAGCTTT+TGG + chr4_1:75382048-75382067 None:intergenic 50.0%
CTGGGATAGATACTGTGAGC+AGG - chr4_1:75382239-75382258 Msa0572480:intron 50.0%
CAGCGAGATGAATAGGGTGA+AGG - chr4_1:75382342-75382361 Msa0572480:intron 50.0%
GCGAGATGAATAGGGTGAAG+GGG - chr4_1:75382344-75382363 Msa0572480:intron 50.0%
! TCGTTTGTTGGAGGAACTGC+AGG - chr4_1:75382387-75382406 Msa0572480:intron 50.0%
! CGTTTGTTGGAGGAACTGCA+GGG - chr4_1:75382388-75382407 Msa0572480:intron 50.0%
GGAGGAACTGCAGGGTAAAA+AGG - chr4_1:75382396-75382415 Msa0572480:intron 50.0%
! AGAGGAAGGCATGTTGGACT+TGG - chr4_1:75382561-75382580 Msa0572480:five_prime_UTR 50.0%
! GAGGAAGGCATGTTGGACTT+GGG - chr4_1:75382562-75382581 Msa0572480:five_prime_UTR 50.0%
TGGACTTGGGAGAGGAAAAG+AGG - chr4_1:75382575-75382594 Msa0572480:five_prime_UTR 50.0%
GGACTTGGGAGAGGAAAAGA+GGG - chr4_1:75382576-75382595 Msa0572480:five_prime_UTR 50.0%
TCCTGCACAGTTTGGCAGTG+TGG + chr4_1:75377460-75377479 None:intergenic 55.0%
! TTGTGTCTCATCGTGCTGGC+TGG + chr4_1:75378045-75378064 None:intergenic 55.0%
CAGCTCCAGGGAGCTAAAAC+AGG - chr4_1:75378564-75378583 Msa0572480:CDS 55.0%
ACCCTCACTCAGATCCACGA+AGG - chr4_1:75379694-75379713 Msa0572480:intron 55.0%
CCCTTCGTGGATCTGAGTGA+GGG + chr4_1:75379698-75379717 None:intergenic 55.0%
CCCTCACTCAGATCCACGAA+GGG - chr4_1:75379695-75379714 Msa0572480:intron 55.0%
GGAGGTTGGCAGAAAATCCC+TGG - chr4_1:75380638-75380657 Msa0572480:intron 55.0%
AAGGCAGAGGAAGAGGCTTC+AGG - chr4_1:75381560-75381579 Msa0572480:intron 55.0%
!!! CCCGGAGCTTTTGGTTTGAC+AGG + chr4_1:75382039-75382058 None:intergenic 55.0%
GGTTGAGAAGCTAGAGGCGA+AGG - chr4_1:75382444-75382463 Msa0572480:intron 55.0%
GCTAGAGGCGAAGGCAAGAA+AGG - chr4_1:75382453-75382472 Msa0572480:five_prime_UTR 55.0%
AGAGGCGAAGGCAAGAAAGG+AGG - chr4_1:75382456-75382475 Msa0572480:five_prime_UTR 55.0%
AGGCATGTTGGACTTGGGAG+AGG - chr4_1:75382567-75382586 Msa0572480:five_prime_UTR 55.0%
CTTGGGAGAGGAAAAGAGGG+AGG - chr4_1:75382579-75382598 Msa0572480:five_prime_UTR 55.0%
AGGAAAAGAGGGAGGCCATC+AGG - chr4_1:75382587-75382606 Msa0572480:five_prime_UTR 55.0%
CCACAAACAGAGCTGCCTGA+TGG + chr4_1:75382605-75382624 None:intergenic 55.0%
CCATCAGGCAGCTCTGTTTG+TGG - chr4_1:75382602-75382621 Msa0572480:five_prime_UTR 55.0%
GCCACACTGCCAAACTGTGC+AGG - chr4_1:75377456-75377475 Msa0572480:CDS 60.0%
GCCCTTCGTGGATCTGAGTG+AGG + chr4_1:75379699-75379718 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75375392 75382702 75375392 ID=Msa0572480;Name=Msa0572480
chr4_1 mRNA 75375392 75382702 75375392 ID=Msa0572480-mRNA-1;Parent=Msa0572480;Name=Msa0572480-mRNA-1;_AED=0.22;_eAED=0.22;_QI=493|1|0.8|1|0.25|0.4|5|0|1354
chr4_1 exon 75375392 75379362 75375392 ID=Msa0572480-mRNA-1:exon:26093;Parent=Msa0572480-mRNA-1
chr4_1 exon 75379509 75379683 75379509 ID=Msa0572480-mRNA-1:exon:26092;Parent=Msa0572480-mRNA-1
chr4_1 exon 75381477 75381552 75381477 ID=Msa0572480-mRNA-1:exon:26091;Parent=Msa0572480-mRNA-1
chr4_1 exon 75382273 75382356 75382273 ID=Msa0572480-mRNA-1:exon:26090;Parent=Msa0572480-mRNA-1
chr4_1 exon 75382451 75382702 75382451 ID=Msa0572480-mRNA-1:exon:26089;Parent=Msa0572480-mRNA-1
chr4_1 five_prime_UTR 75382451 75382702 75382451 ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1 five_prime_UTR 75382273 75382356 75382273 ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1 five_prime_UTR 75381477 75381552 75381477 ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1 five_prime_UTR 75379603 75379683 75379603 ID=Msa0572480-mRNA-1:five_prime_utr;Parent=Msa0572480-mRNA-1
chr4_1 CDS 75379509 75379602 75379509 ID=Msa0572480-mRNA-1:cds;Parent=Msa0572480-mRNA-1
chr4_1 CDS 75375392 75379362 75375392 ID=Msa0572480-mRNA-1:cds;Parent=Msa0572480-mRNA-1
Gene Sequence

>Msa0572480

ATGGTGAAACATCACTTGAGAAAGTCTATAAAATCGCTGTTTGAAAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGGAGCTAAAACAGAAATTGAAGACAAAGTTAAAAGGATATTGAAACTTATTAAAGATGACAACCTTGAAGAGGATGGTACCTCAGCAGAAATTTTGAAGAGGGAACCGCTTGCTGAATTGATTGAGGATATCCACAATCAATACCAATTGATTTACACACAGCATGATCATCTGACAGGTGAGTTAAAGAAAAGGATCAAAGGCAAGCGAGAAAAAGGAAGTTCTTCATCCAGCTCTGATTCAGATTCGGATTCGGATTATTCTTCAAAGGACAGAGGCAGCAAAAATGGTCAACTGCAAAATGAGTTTCAAAAGATAATTGATGGATTAAAGCAAGAACTTGAAGTGGCGCATAAGGAAGTCGCTGACTTAAATCAGAAGTTGACAGTTACACATGAAGAGAAGGAGAACATAAGTTCAAAACACCTTGCAGCATTGACCAAGATACAAGAAGCAGACAAGGTTAGTATGAATTTGAAAACTGATGCTGAGGCATTTGAGATACAAATATCAAAACTTTTGGCTGAGAATACTGAACTAAATAAGCAACTGGACATTGCTGGTAGAGTAGAAGCTGAACTGAGTCAAAAATTGGAGGATATGAAGACAGAAAACAATAGCTTGGCCATGGAGAAAGAGACAGCTCTCCAACAGATTGGTGAGGAAAGGAAGATTACAGATGACCTGAGAAACCTAGTTGATCAATTGAAGGATGATAAGTCAGTGATTGCAAAGGAATTACAAGCAGCAACAGATGAACTTTCTATTCTGAAGCAGCAATTGAAACATGCAGAACAACAAATAACAACAATAAGCCACAATCTGGAGGTTACAGAGGAAGAAAATAAATCATTAAAAGCAGAAATTTCACAAGCTTCAAATGAGATTCAGCTGTCTCAGAACAGAATACAGGAATTTGCATCTGAATTAAGTCAGTTAAAGGAGAAACATGATGAGAAAGACAGGGAAGTGTCAACCCTCACTCAGATCCACGAAGGGCATAAGAATGAGTCCTCAAATCTTATCAGGGAACTAGAGACACAAATCACAAATCTGGGGATGGAATTAGCATCACTGCAAAACGAGAAAAAAGATATGGAGGATCAACTTAAGAGCAGCACCACTGAAAAAAGAGAACTGGAAGAGCGCAATTTAGGCTTGCTAAACCAAATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATCTGCTATCATGAAGAAACTCAAAGATAATGGGGATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGCTCGCTGATTTAAGCTCATTACATGCTCAGAAAACTGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAACTCGAGTTGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATAGAAGACAGAGAACATTTTACAAAAGAAAGAGAAGAGGAACTATCTGATATCATGAAGAAACTCCAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAAATCAAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCAGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGGCAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTTACAAAAGAAAGAGAAGCGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGAAAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATTATTTTTAAAAGTAATGAAGCCTCAACTCGAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACGACACCAGAAATCTGACCTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAGAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTAACCAGGCAGATAAAGAATCTGGAACTGGAGATAAGCTCCATCAAGAGCAAAAATAGCAAAGATGAAGAGCAAATAAGGACCAACGTCCAAGTGATCAATCATCTCCAGGATAAAATTCATATGGCAGAGATAGAAGGTTCAACCCAAATAGTTGCCTTTGGTGAGCAAATTAAGAATCTTCAACTTAATTTGGCACAGGAACTAGCGCAGCAGCGCAAAAAAATGGAGTTGGAGCTGGATTCCATACGCAGCCAGAAGAGTGAAGTTGAAGAGCAGTTAAGAGCCAAAGACCGCGAGTTGAACACTTTAGAGCAAAAAGAAAGTGAATACGCAAAGCAAATAAGTGCTAACCGGGATGAGATCAGTAAACTGGCACAGGAAAATTTGGAGCTAGCAGACAAAATAGATCATTCGGAGAGAGGATTAGCAACAAGAGAATTTGAGTTCTCTGCGCTTCAGGATAAACTTTATAAGGCAGAGGAAGAGGCTTCAGGAAAAACAATTGCCTTCACAGCTCAAGTTGACAATCTGAAAAAGGACTTGCTTTCCTTGCAGAAAACAAAAGAAGAATTGGAGCTCTGCTGTGAAAATATCAAAGAAGAACACACAGAAGTCCTCAGAATGGTTGACAATGAAAAGAATGAATTAGCCAACAAAAACATGGATCTTCAGAGAACATTGGAAGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAATTGGTTTAATGAATACAAGGTCAAACTTGAAGTTGCTGAGAGGAAAATGGAAGAAATGGCAGAAGAGTTTCGTGAAGGCATTGGGTCAAAAGATCAGATGGTAACTGATTTGGAACAGCAAGTTGAAGACCTGAAAAGAGACCTGGAGGAGAAAGGAGATGAAGTCAGCACTTTGTTTGAGAATGTCAGGAATCTTGAGGTAAAGCTTCGCCTGTCAAACCAAAAGCTCCGGGTTACAGAACAATTGCTAAGTGAAAAGGAAGATAGCTTTAGAAAGGCGGAACAAGAGTTTCAGCAAGTTCAGAGAGAACTTGAAGACAGGATTGCTACTCTGGTAGCTACAATCACCGCTAACAATGAAGCTTTTCATGAAACTATCACAAGTGTTAAAGTGTGTGTCAACAGTGTGATATCTGGGATAGATACTGTGAGCAGGAAATTTTCCGACGAAAGCAAAAATCATGAGAACTACATCTCAAACATCTCCCATGAGCTTCAGGTTGCAAAAGAATCTGTCAGCGAGATGAATAGGGTGAAGGGGCAGTTACAGAGAGATAAAGATCGTTTGTTGGAGGAACTGCAGGGTAAAAAGGAAGAGGAATTAACTCTGAGGGAAAAGGTTGAGAAGCTAGAGGCGAAGGCAAGAAAGGAGGAATCAGAGAAGATGAATGTGACATCAACTGTTGTTGAACTTAAGAAGACGGTTGAGGCGCTAGAGAAGTTGATGAAAGAGAAAGAGGAAGGCATGTTGGACTTGGGAGAGGAAAAGAGGGAGGCCATCAGGCAGCTCTGTTTGTGGATTGATTATCACCGCGAGTGTAGTGACTATCTCAAGGAAATCATATCGAAGACACGCAGGGGCCAGAGAGCAGCATAA

Protein sequence

>Msa0572480

MVKHHLRKSIKSLFESHIDPDKEEQLQGAKTEIEDKVKRILKLIKDDNLEEDGTSAEILKREPLAELIEDIHNQYQLIYTQHDHLTGELKKRIKGKREKGSSSSSSDSDSDSDYSSKDRGSKNGQLQNEFQKIIDGLKQELEVAHKEVADLNQKLTVTHEEKENISSKHLAALTKIQEADKVSMNLKTDAEAFEIQISKLLAENTELNKQLDIAGRVEAELSQKLEDMKTENNSLAMEKETALQQIGEERKITDDLRNLVDQLKDDKSVIAKELQAATDELSILKQQLKHAEQQITTISHNLEVTEEENKSLKAEISQASNEIQLSQNRIQEFASELSQLKEKHDEKDREVSTLTQIHEGHKNESSNLIRELETQITNLGMELASLQNEKKDMEDQLKSSTTEKRELEERNLGLLNQISELEMKSKEREEELSAIMKKLKDNGDESSSKISDLTSQIDNLLADLSSLHAQKTELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLIEDREHFTKEREEELSDIMKKLQDNENESSSKISDLTSQIDNLLADISSLHAQKNELEEQIIFKSNEASNQVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVGRKSLEQERLMEDRENFTKEREAELSDIMKKLKDNENESSSKISDLTSQIENLLADISSLHAQKNELEEQIIFKSNEASTRVESITNELNVLQQEVESLRHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLMEDRENLTRQIKNLELEISSIKSKNSKDEEQIRTNVQVINHLQDKIHMAEIEGSTQIVAFGEQIKNLQLNLAQELAQQRKKMELELDSIRSQKSEVEEQLRAKDRELNTLEQKESEYAKQISANRDEISKLAQENLELADKIDHSERGLATREFEFSALQDKLYKAEEEASGKTIAFTAQVDNLKKDLLSLQKTKEELELCCENIKEEHTEVLRMVDNEKNELANKNMDLQRTLEEREDAYQKLNEEYKQIDNWFNEYKVKLEVAERKMEEMAEEFREGIGSKDQMVTDLEQQVEDLKRDLEEKGDEVSTLFENVRNLEVKLRLSNQKLRVTEQLLSEKEDSFRKAEQEFQQVQRELEDRIATLVATITANNEAFHETITSVKVCVNSVISGIDTVSRKFSDESKNHENYISNISHELQVAKESVSEMNRVKGQLQRDKDRLLEELQGKKEEELTLREKVEKLEAKARKEESEKMNVTSTVVELKKTVEALEKLMKEKEEGMLDLGEEKREAIRQLCLWIDYHRECSDYLKEIISKTRRGQRAA*