Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339400 | KEH27853.1 | 92.857 | 210 | 6 | 1 | 127 | 327 | 7 | 216 | 4.95e-134 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339400 | A0A072UFJ6 | 92.857 | 210 | 6 | 1 | 127 | 327 | 7 | 216 | 2.36e-134 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715110 | Msa1339400 | 0.806106 | 9.665075e-50 | -8.615850e-47 |
| Msa0413450 | Msa1339400 | 0.816621 | 5.031369e-52 | -8.615850e-47 |
| Msa0426330 | Msa1339400 | 0.814505 | 1.488704e-51 | -8.615850e-47 |
| Msa0993530 | Msa1339400 | 0.802489 | 5.475570e-49 | -8.615850e-47 |
| Msa1152760 | Msa1339400 | 0.801124 | 1.044038e-48 | -8.615850e-47 |
| Msa0893810 | Msa1339400 | 0.803323 | 3.682023e-49 | -8.615850e-47 |
| Msa0937670 | Msa1339400 | 0.801737 | 7.817654e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339400 | MtrunA17_Chr5g0419131 | 92.823 | 209 | 6 | 1 | 128 | 327 | 7 | 215 | 2.05e-137 | 392 |
| Msa1339400 | MtrunA17_Chr4g0043161 | 78.571 | 210 | 36 | 1 | 127 | 327 | 50 | 259 | 3.72e-118 | 344 |
| Msa1339400 | MtrunA17_Chr8g0372991 | 34.074 | 135 | 77 | 4 | 145 | 270 | 94 | 225 | 1.27e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339400 | AT1G13820.1 | 69.048 | 210 | 56 | 1 | 127 | 327 | 59 | 268 | 4.04e-104 | 309 |
| Msa1339400 | AT5G39220.1 | 60.190 | 211 | 74 | 2 | 127 | 327 | 57 | 267 | 2.93e-88 | 268 |
| Msa1339400 | AT5G39220.2 | 59.804 | 204 | 78 | 3 | 127 | 327 | 57 | 259 | 6.21e-82 | 252 |
| Msa1339400 | AT4G36530.1 | 33.645 | 107 | 62 | 2 | 145 | 243 | 37 | 142 | 1.94e-11 | 64.7 |
| Msa1339400 | AT4G36530.2 | 33.645 | 107 | 62 | 2 | 145 | 243 | 94 | 199 | 2.36e-11 | 64.7 |
Find 99 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGGGGTTTCTCTGATTT+AGG | 0.215057 | tig0003250:+32885 | Msa1339400:CDS |
| GGCTATCGACATACTTGGTT+GGG | 0.251888 | tig0003250:+32869 | Msa1339400:CDS |
| GCAGTTGGTGGTAGGGGCTT+TGG | 0.266577 | tig0003250:+31974 | None:intergenic |
| TGGCTGTTCGGTGGGCTGTT+AGG | 0.269618 | tig0003250:+32035 | Msa1339400:CDS |
| GGGGTGGCAGTTGGTGGTAG+GGG | 0.289366 | tig0003250:+31968 | None:intergenic |
| TGGATGGCACATACAGCTTC+TGG | 0.302445 | tig0003250:-33469 | Msa1339400:intergenic |
| TTGAATATACCTTTCTTATG+AGG | 0.323576 | tig0003250:-34143 | Msa1339400:intergenic |
| ACCACCAGCACAACCACGCC+AGG | 0.334924 | tig0003250:-32209 | Msa1339400:intergenic |
| CATCAGAAGGCCAATGATAT+TGG | 0.348222 | tig0003250:+33396 | Msa1339400:CDS |
| AGTGGAGTTTGTGCTGTCAT+AGG | 0.369011 | tig0003250:+32009 | Msa1339400:CDS |
| CCAACATAGGCTACCGATCT+AGG | 0.370224 | tig0003250:-33665 | Msa1339400:intergenic |
| GTGTTATTTAGTTCTGCTTC+AGG | 0.371611 | tig0003250:+32241 | Msa1339400:CDS |
| GTTTGTGCTGTCATAGGTTC+TGG | 0.374090 | tig0003250:+32015 | Msa1339400:CDS |
| CTGTGTTCCTTGTGTGGGAA+GGG | 0.377187 | tig0003250:+32105 | Msa1339400:CDS |
| TATCCATTGTTGGAAGAGTC+TGG | 0.412505 | tig0003250:+32834 | Msa1339400:CDS |
| TATTCAGTTCATGTTTAGAA+TGG | 0.414992 | tig0003250:+32802 | Msa1339400:intron |
| TGCGAGCCTGTATACTGTCC+TGG | 0.424065 | tig0003250:+32191 | Msa1339400:CDS |
| CTGTCCTGGCGTGGTTGTGC+TGG | 0.424222 | tig0003250:+32205 | Msa1339400:CDS |
| GGTCTGTTTGCGGTGGCACT+TGG | 0.424956 | tig0003250:+32162 | Msa1339400:CDS |
| GGGCTATCGACATACTTGGT+TGG | 0.432068 | tig0003250:+32868 | Msa1339400:CDS |
| TTGATAGTAGCTTGTTTAGT+GGG | 0.434223 | tig0003250:+32141 | Msa1339400:CDS |
| TCTGTGTTCCTTGTGTGGGA+AGG | 0.437595 | tig0003250:+32104 | Msa1339400:CDS |
| CTAGATCGGTAGCCTATGTT+GGG | 0.438798 | tig0003250:+33666 | Msa1339400:CDS |
| TGGGCTGTTAGGCGTTGTCC+AGG | 0.453056 | tig0003250:+32046 | Msa1339400:CDS |
| TTTAGTGAGTTGGTTCTTGG+TGG | 0.455739 | tig0003250:+32284 | Msa1339400:CDS |
| AAACCGTGTAGAAGAACAAT+TGG | 0.456619 | tig0003250:-32695 | Msa1339400:intergenic |
| CCTAGATCGGTAGCCTATGT+TGG | 0.461188 | tig0003250:+33665 | Msa1339400:CDS |
| GTTGATAGTAGCTTGTTTAG+TGG | 0.462171 | tig0003250:+32140 | Msa1339400:CDS |
| AGTGTATATACAGAGGGAAC+TGG | 0.463727 | tig0003250:+33626 | Msa1339400:CDS |
| CAGCACAAACTCCACTGAAC+CGG | 0.468857 | tig0003250:-32002 | Msa1339400:intergenic |
| TGTGTTCCTTGTGTGGGAAG+GGG | 0.473938 | tig0003250:+32106 | Msa1339400:CDS |
| TCCTTACGCACCATCCTTGA+CGG | 0.477641 | tig0003250:+33837 | Msa1339400:CDS |
| GCTTGCATTGCTTATTGCCA+TGG | 0.478104 | tig0003250:+34067 | Msa1339400:CDS |
| CTTTGGTTCTGCCGGTTCAG+TGG | 0.479446 | tig0003250:+31991 | Msa1339400:CDS |
| GAGATACAGATATCCATTGT+TGG | 0.483959 | tig0003250:+32824 | Msa1339400:CDS |
| TGAATATACCTTTCTTATGA+GGG | 0.484063 | tig0003250:-34142 | Msa1339400:intergenic |
| ATGTATTCATTTGTCTCGAA+GGG | 0.489070 | tig0003250:-34202 | Msa1339400:intergenic |
| TGTCATAGGTTCTGGCTGTT+CGG | 0.490611 | tig0003250:+32023 | Msa1339400:CDS |
| TCCTGGCGTGGTTGTGCTGG+TGG | 0.493411 | tig0003250:+32208 | Msa1339400:CDS |
| ACCACGCCAGGACAGTATAC+AGG | 0.493812 | tig0003250:-32197 | Msa1339400:intergenic |
| TTGTTTAGTGGGTCTGTTTG+CGG | 0.494259 | tig0003250:+32152 | Msa1339400:CDS |
| CTTGGTCCAACCAATATCAT+TGG | 0.498210 | tig0003250:-33406 | Msa1339400:intergenic |
| TATCATTGGCCTTCTGATGT+AGG | 0.502689 | tig0003250:-33392 | Msa1339400:intergenic |
| GTTAGTGAAGGTCAAATAGT+TGG | 0.503815 | tig0003250:-33811 | Msa1339400:intergenic |
| GTGTTCCTTGTGTGGGAAGG+GGG | 0.505361 | tig0003250:+32107 | Msa1339400:CDS |
| GGTAGGGGCTTTGGTTCTGC+CGG | 0.510134 | tig0003250:+31983 | Msa1339400:CDS |
| CATAGGTTCTGGCTGTTCGG+TGG | 0.512728 | tig0003250:+32026 | Msa1339400:CDS |
| CAGTGTCTGTGTTCCTTGTG+TGG | 0.516268 | tig0003250:+32099 | Msa1339400:CDS |
| TTGTGCTGGTGGTTCTCTGT+GGG | 0.516634 | tig0003250:+32219 | Msa1339400:CDS |
| GCATTGCTTATTGCCATGGT+GGG | 0.516840 | tig0003250:+34071 | Msa1339400:CDS |
| AATGTATTCATTTGTCTCGA+AGG | 0.517559 | tig0003250:-34203 | Msa1339400:intergenic |
| TGAGTTGGTTCTTGGTGGAG+AGG | 0.529772 | tig0003250:+32289 | Msa1339400:CDS |
| CTTAGCAACCTTACCTAGAT+CGG | 0.530689 | tig0003250:+33652 | Msa1339400:CDS |
| ATAGGTTCTGGCTGTTCGGT+GGG | 0.532278 | tig0003250:+32027 | Msa1339400:CDS |
| CCCGTCAAGGATGGTGCGTA+AGG | 0.540263 | tig0003250:-33838 | Msa1339400:intergenic |
| ACAACAGCAAAACTACTGCC+TGG | 0.540695 | tig0003250:-32064 | Msa1339400:intergenic |
| AATTGCACCCCTCATAAGAA+AGG | 0.542107 | tig0003250:+34134 | Msa1339400:CDS |
| ATAATTGACAGCAAAGTCAA+TGG | 0.542640 | tig0003250:-33446 | Msa1339400:intergenic |
| ACTTGGGCTATCGACATACT+TGG | 0.543897 | tig0003250:+32864 | Msa1339400:CDS |
| CTTGACACAACTGCTCATGA+TGG | 0.544043 | tig0003250:-32648 | Msa1339400:intergenic |
| TTCTTCTACACGGTTTCGAT+AGG | 0.544486 | tig0003250:+32702 | Msa1339400:CDS |
| TTTGGAAGTCCTACATCAGA+AGG | 0.545172 | tig0003250:+33383 | Msa1339400:CDS |
| GCTATCGACATACTTGGTTG+GGG | 0.547619 | tig0003250:+32870 | Msa1339400:CDS |
| TAGTTGGCATATAAGCGTAA+TGG | 0.554089 | tig0003250:-33795 | Msa1339400:intergenic |
| AGAAGGCCAATGATATTGGT+TGG | 0.555544 | tig0003250:+33400 | Msa1339400:CDS |
| ATGTACTTAACCTGCATAGG+AGG | 0.555688 | tig0003250:-32353 | Msa1339400:intergenic |
| CCTCCAATTGTTCTTCTACA+CGG | 0.558051 | tig0003250:+32692 | Msa1339400:CDS |
| CAAGGCACTGGTGCAGAACA+AGG | 0.558230 | tig0003250:+32667 | Msa1339400:CDS |
| GAGCAGTTGTGTCAAGGCAC+TGG | 0.559691 | tig0003250:+32655 | Msa1339400:CDS |
| GAGAGGTGTTCCTTGCGTCA+AGG | 0.560252 | tig0003250:+32306 | Msa1339400:CDS |
| TTGACACAACTGCTCATGAT+GGG | 0.564698 | tig0003250:-32647 | Msa1339400:intergenic |
| CCGTGTAGAAGAACAATTGG+AGG | 0.565041 | tig0003250:-32692 | Msa1339400:intergenic |
| CACATTAGTCCCGTCAAGGA+TGG | 0.568377 | tig0003250:-33847 | Msa1339400:intergenic |
| GCAACAGCAGAACCGAGGCT+TGG | 0.569874 | tig0003250:-33424 | Msa1339400:intergenic |
| ATATTGGTTGGACCAAGCCT+CGG | 0.580618 | tig0003250:+33412 | Msa1339400:CDS |
| TGCATTGCTTATTGCCATGG+TGG | 0.580841 | tig0003250:+34070 | Msa1339400:CDS |
| AGTGTCTGTGTTCCTTGTGT+GGG | 0.580983 | tig0003250:+32100 | Msa1339400:CDS |
| AAACCAGACTCTTCCAACAA+TGG | 0.584131 | tig0003250:-32837 | Msa1339400:intergenic |
| CCTTACGCACCATCCTTGAC+GGG | 0.586415 | tig0003250:+33838 | Msa1339400:CDS |
| CATCATGAGCAGTTGTGTCA+AGG | 0.588221 | tig0003250:+32649 | Msa1339400:CDS |
| ATAGGCTACCGATCTAGGTA+AGG | 0.590029 | tig0003250:-33660 | Msa1339400:intergenic |
| GAATATACCTTTCTTATGAG+GGG | 0.592750 | tig0003250:-34141 | Msa1339400:intergenic |
| GGAGATATTTACCCCAACAT+AGG | 0.596359 | tig0003250:-33678 | Msa1339400:intergenic |
| ATGGAGAGGGCCTTGACGCA+AGG | 0.599167 | tig0003250:-32316 | Msa1339400:intergenic |
| GTTGTGCTGGTGGTTCTCTG+TGG | 0.602537 | tig0003250:+32218 | Msa1339400:CDS |
| GCCTGTATACTGTCCTGGCG+TGG | 0.605586 | tig0003250:+32196 | Msa1339400:CDS |
| AACTCACATTAGTCCCGTCA+AGG | 0.617765 | tig0003250:-33851 | Msa1339400:intergenic |
| GACGCTAGTGTATATACAGA+GGG | 0.618405 | tig0003250:+33620 | Msa1339400:CDS |
| AAGATGTACTTAACCTGCAT+AGG | 0.618540 | tig0003250:-32356 | Msa1339400:intergenic |
| GCGTAAGGACATGTTAGTGA+AGG | 0.631032 | tig0003250:-33823 | Msa1339400:intergenic |
| TGTATTCATTTGTCTCGAAG+GGG | 0.644877 | tig0003250:-34201 | Msa1339400:intergenic |
| TTTAGTGGGTCTGTTTGCGG+TGG | 0.666013 | tig0003250:+32155 | Msa1339400:CDS |
| AAATCTTCCTCCTTGTGACG+TGG | 0.670338 | tig0003250:+33007 | Msa1339400:CDS |
| TGACGCTAGTGTATATACAG+AGG | 0.685376 | tig0003250:+33619 | Msa1339400:CDS |
| TAGATCGGTAGCCTATGTTG+GGG | 0.690553 | tig0003250:+33667 | Msa1339400:CDS |
| CAATGGCAACAGCAGAACCG+AGG | 0.691199 | tig0003250:-33429 | None:intergenic |
| ATGGCAATAAGCAATGCAAG+CGG | 0.692723 | tig0003250:-34065 | None:intergenic |
| TTTGATACCACGTCACAAGG+AGG | 0.713535 | tig0003250:-33014 | None:intergenic |
| ACAGTAGCATCATCCCACCA+TGG | 0.730059 | tig0003250:-34084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACAAAATTACTATTTCTT+TGG | + | tig0003250:32428-32447 | Msa1339400:intron | 15.0% |
| !! | AATAAGACAATATAAAATTC+AGG | - | tig0003250:32783-32802 | Msa1339400:intergenic | 15.0% |
| !! | AAAATGTTGAAACATATATT+GGG | - | tig0003250:34021-34040 | Msa1339400:intergenic | 15.0% |
| !! | AAAAATGTTGAAACATATAT+TGG | - | tig0003250:34022-34041 | Msa1339400:intergenic | 15.0% |
| !!! | TATGTTAATTTTATGGATTT+TGG | + | tig0003250:34171-34190 | Msa1339400:CDS | 15.0% |
| !!! | TAACAAAATTACTATTTCTT+TGG | + | tig0003250:32428-32447 | Msa1339400:intron | 15.0% |
| !! | AATAAGACAATATAAAATTC+AGG | - | tig0003250:32783-32802 | Msa1339400:intergenic | 15.0% |
| !! | AAAATGTTGAAACATATATT+GGG | - | tig0003250:34021-34040 | Msa1339400:intergenic | 15.0% |
| !! | AAAAATGTTGAAACATATAT+TGG | - | tig0003250:34022-34041 | Msa1339400:intergenic | 15.0% |
| !!! | TATGTTAATTTTATGGATTT+TGG | + | tig0003250:34171-34190 | Msa1339400:CDS | 15.0% |
| !!! | GAACTATAAAATTTTGTTGT+TGG | + | tig0003250:32383-32402 | Msa1339400:intron | 20.0% |
| !!! | TATAAAATTTTGTTGTTGGT+TGG | + | tig0003250:32387-32406 | Msa1339400:intron | 20.0% |
| !!! | TTACTATTTCTTTGGATTAA+TGG | + | tig0003250:32436-32455 | Msa1339400:intron | 20.0% |
| !!! | ATTGCTATTCGAAATAAAAT+TGG | - | tig0003250:32503-32522 | Msa1339400:intergenic | 20.0% |
| !! | CTTAATTCAAGATAATTGAA+TGG | + | tig0003250:33167-33186 | Msa1339400:intron | 20.0% |
| !! | TATCGAATCAGTTAAATTAT+TGG | + | tig0003250:33229-33248 | Msa1339400:intron | 20.0% |
| !! | TAAACTATCATCTGAATAAT+TGG | + | tig0003250:33266-33285 | Msa1339400:intron | 20.0% |
| !!! | GTATTTTTCTATAACAGTTT+TGG | + | tig0003250:33365-33384 | Msa1339400:intron | 20.0% |
| !! | ATATTAAGACGTGAAATTAT+TGG | - | tig0003250:33492-33511 | Msa1339400:intergenic | 20.0% |
| !!! | TCACATTTTTATCTTCATAT+TGG | + | tig0003250:33902-33921 | Msa1339400:intron | 20.0% |
| !!! | CACATTTTTATCTTCATATT+GGG | + | tig0003250:33903-33922 | Msa1339400:intron | 20.0% |
| !!! | TTTTCATATATCCTCTTTAT+AGG | + | tig0003250:34038-34057 | Msa1339400:intron | 20.0% |
| !!! | GAACTATAAAATTTTGTTGT+TGG | + | tig0003250:32383-32402 | Msa1339400:intron | 20.0% |
| !!! | TATAAAATTTTGTTGTTGGT+TGG | + | tig0003250:32387-32406 | Msa1339400:intron | 20.0% |
| !!! | TTACTATTTCTTTGGATTAA+TGG | + | tig0003250:32436-32455 | Msa1339400:intron | 20.0% |
| !!! | ATTGCTATTCGAAATAAAAT+TGG | - | tig0003250:32503-32522 | Msa1339400:intergenic | 20.0% |
| !! | CTTAATTCAAGATAATTGAA+TGG | + | tig0003250:33167-33186 | Msa1339400:intron | 20.0% |
| !! | TATCGAATCAGTTAAATTAT+TGG | + | tig0003250:33229-33248 | Msa1339400:intron | 20.0% |
| !! | TAAACTATCATCTGAATAAT+TGG | + | tig0003250:33266-33285 | Msa1339400:intron | 20.0% |
| !!! | GTATTTTTCTATAACAGTTT+TGG | + | tig0003250:33365-33384 | Msa1339400:intron | 20.0% |
| !! | ATATTAAGACGTGAAATTAT+TGG | - | tig0003250:33492-33511 | Msa1339400:intergenic | 20.0% |
| !!! | TCACATTTTTATCTTCATAT+TGG | + | tig0003250:33902-33921 | Msa1339400:intron | 20.0% |
| !!! | CACATTTTTATCTTCATATT+GGG | + | tig0003250:33903-33922 | Msa1339400:intron | 20.0% |
| !!! | TTTTCATATATCCTCTTTAT+AGG | + | tig0003250:34038-34057 | Msa1339400:intron | 20.0% |
| !!! | GAATGTTTGATTTGTGTTTA+TGG | + | tig0003250:32533-32552 | Msa1339400:intron | 25.0% |
| ! | TTGTTTCGTATGATATGATT+AGG | + | tig0003250:32607-32626 | Msa1339400:intron | 25.0% |
| ! | TATTCAGTTCATGTTTAGAA+TGG | + | tig0003250:32802-32821 | Msa1339400:intron | 25.0% |
| !! | TATTTGCAATTCATCTTTTC+AGG | + | tig0003250:33577-33596 | Msa1339400:intron | 25.0% |
| !!! | CTTAATGTTTTAGTAAGATG+TGG | - | tig0003250:33702-33721 | Msa1339400:intergenic | 25.0% |
| ! | TGAATATACCTTTCTTATGA+GGG | - | tig0003250:34145-34164 | Msa1339400:intergenic | 25.0% |
| ! | TTGAATATACCTTTCTTATG+AGG | - | tig0003250:34146-34165 | Msa1339400:intergenic | 25.0% |
| !!! | GAATGTTTGATTTGTGTTTA+TGG | + | tig0003250:32533-32552 | Msa1339400:intron | 25.0% |
| ! | TTGTTTCGTATGATATGATT+AGG | + | tig0003250:32607-32626 | Msa1339400:intron | 25.0% |
| ! | TATTCAGTTCATGTTTAGAA+TGG | + | tig0003250:32802-32821 | Msa1339400:intron | 25.0% |
| !! | TATTTGCAATTCATCTTTTC+AGG | + | tig0003250:33577-33596 | Msa1339400:intron | 25.0% |
| !!! | CTTAATGTTTTAGTAAGATG+TGG | - | tig0003250:33702-33721 | Msa1339400:intergenic | 25.0% |
| ! | TGAATATACCTTTCTTATGA+GGG | - | tig0003250:34145-34164 | Msa1339400:intergenic | 25.0% |
| ! | TTGAATATACCTTTCTTATG+AGG | - | tig0003250:34146-34165 | Msa1339400:intergenic | 25.0% |
| !! | TTGATAGTAGCTTGTTTAGT+GGG | + | tig0003250:32141-32160 | Msa1339400:CDS | 30.0% |
| !!! | TTTTTTAGTGAGTTGGTTCT+TGG | + | tig0003250:32281-32300 | Msa1339400:CDS | 30.0% |
| ! | AAAAAGAGTACAAATGGAGA+GGG | - | tig0003250:32332-32351 | Msa1339400:intergenic | 30.0% |
| ! | AAAAAAGAGTACAAATGGAG+AGG | - | tig0003250:32333-32352 | Msa1339400:intergenic | 30.0% |
| !!! | AAAATTTTGTTGTTGGTTGG+TGG | + | tig0003250:32390-32409 | Msa1339400:intron | 30.0% |
| AATTTCTGTTGCTCGAAAAA+CGG | + | tig0003250:32469-32488 | Msa1339400:intron | 30.0% | |
| AACAGCAAAAATTAGTTGTG+AGG | - | tig0003250:32573-32592 | Msa1339400:intergenic | 30.0% | |
| AAAAAAGCCTTACAGAGAAA+GGG | - | tig0003250:32951-32970 | Msa1339400:intergenic | 30.0% | |
| AAAAAAAGCCTTACAGAGAA+AGG | - | tig0003250:32952-32971 | Msa1339400:intergenic | 30.0% | |
| TTATAGGTTTGATCAACACT+CGG | - | tig0003250:33101-33120 | Msa1339400:intergenic | 30.0% | |
| TGTTGAAAGAAATTGACCAT+CGG | - | tig0003250:33301-33320 | Msa1339400:intergenic | 30.0% | |
| ATAATTGACAGCAAAGTCAA+TGG | - | tig0003250:33449-33468 | Msa1339400:intergenic | 30.0% | |
| TAAGACGTGAAATTATTGGA+TGG | - | tig0003250:33488-33507 | Msa1339400:intergenic | 30.0% | |
| AATTCAATGCTTACACTGTT+TGG | + | tig0003250:33745-33764 | Msa1339400:intron | 30.0% | |
| !! | CTAGTAGTCATTTTAAGGAT+AGG | - | tig0003250:33879-33898 | Msa1339400:intergenic | 30.0% |
| CTATCCTTAAAATGACTACT+AGG | + | tig0003250:33877-33896 | Msa1339400:intron | 30.0% | |
| TATCTTCATATTGGGACATT+AGG | + | tig0003250:33911-33930 | Msa1339400:intron | 30.0% | |
| ! | TATTGGGTTGTTAAAACTCT+CGG | - | tig0003250:34005-34024 | Msa1339400:intergenic | 30.0% |
| TCATATATCCTCTTTATAGG+TGG | + | tig0003250:34041-34060 | Msa1339400:intron | 30.0% | |
| CATATATCCTCTTTATAGGT+GGG | + | tig0003250:34042-34061 | Msa1339400:intron | 30.0% | |
| !!! | ACTGTTGATTTTATGACTAG+TGG | + | tig0003250:34102-34121 | Msa1339400:CDS | 30.0% |
| GAATATACCTTTCTTATGAG+GGG | - | tig0003250:34144-34163 | Msa1339400:intergenic | 30.0% | |
| ATGTATTCATTTGTCTCGAA+GGG | - | tig0003250:34205-34224 | Msa1339400:intergenic | 30.0% | |
| AATGTATTCATTTGTCTCGA+AGG | - | tig0003250:34206-34225 | Msa1339400:intergenic | 30.0% | |
| !! | TTGATAGTAGCTTGTTTAGT+GGG | + | tig0003250:32141-32160 | Msa1339400:CDS | 30.0% |
| !!! | TTTTTTAGTGAGTTGGTTCT+TGG | + | tig0003250:32281-32300 | Msa1339400:CDS | 30.0% |
| ! | AAAAAGAGTACAAATGGAGA+GGG | - | tig0003250:32332-32351 | Msa1339400:intergenic | 30.0% |
| ! | AAAAAAGAGTACAAATGGAG+AGG | - | tig0003250:32333-32352 | Msa1339400:intergenic | 30.0% |
| !!! | AAAATTTTGTTGTTGGTTGG+TGG | + | tig0003250:32390-32409 | Msa1339400:intron | 30.0% |
| AATTTCTGTTGCTCGAAAAA+CGG | + | tig0003250:32469-32488 | Msa1339400:intron | 30.0% | |
| AACAGCAAAAATTAGTTGTG+AGG | - | tig0003250:32573-32592 | Msa1339400:intergenic | 30.0% | |
| AAAAAAGCCTTACAGAGAAA+GGG | - | tig0003250:32951-32970 | Msa1339400:intergenic | 30.0% | |
| AAAAAAAGCCTTACAGAGAA+AGG | - | tig0003250:32952-32971 | Msa1339400:intergenic | 30.0% | |
| TTATAGGTTTGATCAACACT+CGG | - | tig0003250:33101-33120 | Msa1339400:intergenic | 30.0% | |
| TGTTGAAAGAAATTGACCAT+CGG | - | tig0003250:33301-33320 | Msa1339400:intergenic | 30.0% | |
| ATAATTGACAGCAAAGTCAA+TGG | - | tig0003250:33449-33468 | Msa1339400:intergenic | 30.0% | |
| TAAGACGTGAAATTATTGGA+TGG | - | tig0003250:33488-33507 | Msa1339400:intergenic | 30.0% | |
| AATTCAATGCTTACACTGTT+TGG | + | tig0003250:33745-33764 | Msa1339400:intron | 30.0% | |
| !! | CTAGTAGTCATTTTAAGGAT+AGG | - | tig0003250:33879-33898 | Msa1339400:intergenic | 30.0% |
| CTATCCTTAAAATGACTACT+AGG | + | tig0003250:33877-33896 | Msa1339400:intron | 30.0% | |
| TATCTTCATATTGGGACATT+AGG | + | tig0003250:33911-33930 | Msa1339400:intron | 30.0% | |
| ! | TATTGGGTTGTTAAAACTCT+CGG | - | tig0003250:34005-34024 | Msa1339400:intergenic | 30.0% |
| TCATATATCCTCTTTATAGG+TGG | + | tig0003250:34041-34060 | Msa1339400:intron | 30.0% | |
| CATATATCCTCTTTATAGGT+GGG | + | tig0003250:34042-34061 | Msa1339400:intron | 30.0% | |
| !!! | ACTGTTGATTTTATGACTAG+TGG | + | tig0003250:34102-34121 | Msa1339400:CDS | 30.0% |
| GAATATACCTTTCTTATGAG+GGG | - | tig0003250:34144-34163 | Msa1339400:intergenic | 30.0% | |
| ATGTATTCATTTGTCTCGAA+GGG | - | tig0003250:34205-34224 | Msa1339400:intergenic | 30.0% | |
| AATGTATTCATTTGTCTCGA+AGG | - | tig0003250:34206-34225 | Msa1339400:intergenic | 30.0% | |
| !! | GTTGATAGTAGCTTGTTTAG+TGG | + | tig0003250:32140-32159 | Msa1339400:CDS | 35.0% |
| !! | GTGTTATTTAGTTCTGCTTC+AGG | + | tig0003250:32241-32260 | Msa1339400:CDS | 35.0% |
| !!! | TGCTTCAGGCTTTGTTTTTA+GGG | + | tig0003250:32255-32274 | Msa1339400:CDS | 35.0% |
| ! | GGAGGAAAAAAGAGTACAAA+TGG | - | tig0003250:32338-32357 | Msa1339400:intergenic | 35.0% |
| AAGATGTACTTAACCTGCAT+AGG | - | tig0003250:32359-32378 | Msa1339400:intergenic | 35.0% | |
| AAACCGTGTAGAAGAACAAT+TGG | - | tig0003250:32698-32717 | Msa1339400:intergenic | 35.0% | |
| GAGATACAGATATCCATTGT+TGG | + | tig0003250:32824-32843 | Msa1339400:CDS | 35.0% | |
| AAAAAGCCTTACAGAGAAAG+GGG | - | tig0003250:32950-32969 | Msa1339400:intergenic | 35.0% | |
| AAAACGCAATCACTTCTATC+AGG | + | tig0003250:33034-33053 | Msa1339400:intron | 35.0% | |
| TATAGGTTTGATCAACACTC+GGG | - | tig0003250:33100-33119 | Msa1339400:intergenic | 35.0% | |
| TGTCTGTGTCAGTACTTTAT+AGG | - | tig0003250:33117-33136 | Msa1339400:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | + | tig0003250:33196-33215 | Msa1339400:intron | 35.0% | |
| !! | TTGCAATTCATCTTTTCAGG+TGG | + | tig0003250:33580-33599 | Msa1339400:intron | 35.0% |
| TAGTTGGCATATAAGCGTAA+TGG | - | tig0003250:33798-33817 | Msa1339400:intergenic | 35.0% | |
| GTTAGTGAAGGTCAAATAGT+TGG | - | tig0003250:33814-33833 | Msa1339400:intergenic | 35.0% | |
| !! | GATGCCTAGTAGTCATTTTA+AGG | - | tig0003250:33884-33903 | Msa1339400:intergenic | 35.0% |
| ! | ACATGTTCCCTTTGATAACT+TGG | + | tig0003250:33935-33954 | Msa1339400:intron | 35.0% |
| TGTGATGCCAAGTTATCAAA+GGG | - | tig0003250:33945-33964 | Msa1339400:intergenic | 35.0% | |
| ATGTGATGCCAAGTTATCAA+AGG | - | tig0003250:33946-33965 | Msa1339400:intergenic | 35.0% | |
| ATGATCAAGAACTTTGTGCT+TGG | + | tig0003250:33964-33983 | Msa1339400:intron | 35.0% | |
| !! | GTTGATTTTATGACTAGTGG+CGG | + | tig0003250:34105-34124 | Msa1339400:CDS | 35.0% |
| TGTATTCATTTGTCTCGAAG+GGG | - | tig0003250:34204-34223 | Msa1339400:intergenic | 35.0% | |
| !! | GTTGATAGTAGCTTGTTTAG+TGG | + | tig0003250:32140-32159 | Msa1339400:CDS | 35.0% |
| !! | GTGTTATTTAGTTCTGCTTC+AGG | + | tig0003250:32241-32260 | Msa1339400:CDS | 35.0% |
| !!! | TGCTTCAGGCTTTGTTTTTA+GGG | + | tig0003250:32255-32274 | Msa1339400:CDS | 35.0% |
| ! | GGAGGAAAAAAGAGTACAAA+TGG | - | tig0003250:32338-32357 | Msa1339400:intergenic | 35.0% |
| AAGATGTACTTAACCTGCAT+AGG | - | tig0003250:32359-32378 | Msa1339400:intergenic | 35.0% | |
| AAACCGTGTAGAAGAACAAT+TGG | - | tig0003250:32698-32717 | Msa1339400:intergenic | 35.0% | |
| GAGATACAGATATCCATTGT+TGG | + | tig0003250:32824-32843 | Msa1339400:CDS | 35.0% | |
| AAAAAGCCTTACAGAGAAAG+GGG | - | tig0003250:32950-32969 | Msa1339400:intergenic | 35.0% | |
| AAAACGCAATCACTTCTATC+AGG | + | tig0003250:33034-33053 | Msa1339400:intron | 35.0% | |
| TATAGGTTTGATCAACACTC+GGG | - | tig0003250:33100-33119 | Msa1339400:intergenic | 35.0% | |
| TGTCTGTGTCAGTACTTTAT+AGG | - | tig0003250:33117-33136 | Msa1339400:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | + | tig0003250:33196-33215 | Msa1339400:intron | 35.0% | |
| !! | TTGCAATTCATCTTTTCAGG+TGG | + | tig0003250:33580-33599 | Msa1339400:intron | 35.0% |
| TAGTTGGCATATAAGCGTAA+TGG | - | tig0003250:33798-33817 | Msa1339400:intergenic | 35.0% | |
| GTTAGTGAAGGTCAAATAGT+TGG | - | tig0003250:33814-33833 | Msa1339400:intergenic | 35.0% | |
| !! | GATGCCTAGTAGTCATTTTA+AGG | - | tig0003250:33884-33903 | Msa1339400:intergenic | 35.0% |
| ! | ACATGTTCCCTTTGATAACT+TGG | + | tig0003250:33935-33954 | Msa1339400:intron | 35.0% |
| TGTGATGCCAAGTTATCAAA+GGG | - | tig0003250:33945-33964 | Msa1339400:intergenic | 35.0% | |
| ATGTGATGCCAAGTTATCAA+AGG | - | tig0003250:33946-33965 | Msa1339400:intergenic | 35.0% | |
| ATGATCAAGAACTTTGTGCT+TGG | + | tig0003250:33964-33983 | Msa1339400:intron | 35.0% | |
| !! | GTTGATTTTATGACTAGTGG+CGG | + | tig0003250:34105-34124 | Msa1339400:CDS | 35.0% |
| TGTATTCATTTGTCTCGAAG+GGG | - | tig0003250:34204-34223 | Msa1339400:intergenic | 35.0% | |
| ! | TTGTTTAGTGGGTCTGTTTG+CGG | + | tig0003250:32152-32171 | Msa1339400:CDS | 40.0% |
| !!! | CTGCTTCAGGCTTTGTTTTT+AGG | + | tig0003250:32254-32273 | Msa1339400:CDS | 40.0% |
| !!! | GCTTCAGGCTTTGTTTTTAG+GGG | + | tig0003250:32256-32275 | Msa1339400:CDS | 40.0% |
| !!! | CTTCAGGCTTTGTTTTTAGG+GGG | + | tig0003250:32257-32276 | Msa1339400:CDS | 40.0% |
| !!! | TTCAGGCTTTGTTTTTAGGG+GGG | + | tig0003250:32258-32277 | Msa1339400:CDS | 40.0% |
| !! | TTTAGTGAGTTGGTTCTTGG+TGG | + | tig0003250:32284-32303 | Msa1339400:CDS | 40.0% |
| !!! | ACTCTTTTTTCCTCCTATGC+AGG | + | tig0003250:32343-32362 | Msa1339400:CDS | 40.0% |
| ATGTACTTAACCTGCATAGG+AGG | - | tig0003250:32356-32375 | Msa1339400:intergenic | 40.0% | |
| GCAGGTTAAGTACATCTTGT+TGG | + | tig0003250:32361-32380 | Msa1339400:intron | 40.0% | |
| TTGACACAACTGCTCATGAT+GGG | - | tig0003250:32650-32669 | Msa1339400:intergenic | 40.0% | |
| CCTCCAATTGTTCTTCTACA+CGG | + | tig0003250:32692-32711 | Msa1339400:CDS | 40.0% | |
| TTCTTCTACACGGTTTCGAT+AGG | + | tig0003250:32702-32721 | Msa1339400:CDS | 40.0% | |
| TATCCATTGTTGGAAGAGTC+TGG | + | tig0003250:32834-32853 | Msa1339400:CDS | 40.0% | |
| AAACCAGACTCTTCCAACAA+TGG | - | tig0003250:32840-32859 | Msa1339400:intergenic | 40.0% | |
| !!! | AAGAGTCTGGTTTTGAGACT+TGG | + | tig0003250:32847-32866 | Msa1339400:CDS | 40.0% |
| !!! | AGAGTCTGGTTTTGAGACTT+GGG | + | tig0003250:32848-32867 | Msa1339400:CDS | 40.0% |
| ! | CTTTTACCCCTTTCTCTGTA+AGG | + | tig0003250:32941-32960 | Msa1339400:intron | 40.0% |
| ! | CAAGGAGGAAGATTTTCTGA+TGG | - | tig0003250:33002-33021 | Msa1339400:intergenic | 40.0% |
| ATAGGTTTGATCAACACTCG+GGG | - | tig0003250:33099-33118 | Msa1339400:intergenic | 40.0% | |
| TGTCATTGTCACTGTTGTGT+CGG | - | tig0003250:33147-33166 | Msa1339400:intergenic | 40.0% | |
| TGCATTGTTTCACTGTGTTG+AGG | + | tig0003250:33335-33354 | Msa1339400:intron | 40.0% | |
| GCATTGTTTCACTGTGTTGA+GGG | + | tig0003250:33336-33355 | Msa1339400:intron | 40.0% | |
| TTTGGAAGTCCTACATCAGA+AGG | + | tig0003250:33383-33402 | Msa1339400:CDS | 40.0% | |
| !! | TATCATTGGCCTTCTGATGT+AGG | - | tig0003250:33395-33414 | Msa1339400:intergenic | 40.0% |
| CATCAGAAGGCCAATGATAT+TGG | + | tig0003250:33396-33415 | Msa1339400:CDS | 40.0% | |
| AGAAGGCCAATGATATTGGT+TGG | + | tig0003250:33400-33419 | Msa1339400:CDS | 40.0% | |
| CTTGGTCCAACCAATATCAT+TGG | - | tig0003250:33409-33428 | Msa1339400:intergenic | 40.0% | |
| TCACGTCTTAATATCCACCA+CGG | + | tig0003250:33498-33517 | Msa1339400:intron | 40.0% | |
| TGACGCTAGTGTATATACAG+AGG | + | tig0003250:33619-33638 | Msa1339400:CDS | 40.0% | |
| GACGCTAGTGTATATACAGA+GGG | + | tig0003250:33620-33639 | Msa1339400:CDS | 40.0% | |
| AGTGTATATACAGAGGGAAC+TGG | + | tig0003250:33626-33645 | Msa1339400:CDS | 40.0% | |
| CTTAGCAACCTTACCTAGAT+CGG | + | tig0003250:33652-33671 | Msa1339400:CDS | 40.0% | |
| GGAGATATTTACCCCAACAT+AGG | - | tig0003250:33681-33700 | Msa1339400:intergenic | 40.0% | |
| TCAAGAACTTTGTGCTTGGT+TGG | + | tig0003250:33968-33987 | Msa1339400:intron | 40.0% | |
| !! | CTTTGTGCTTGGTTGGTAAT+AGG | + | tig0003250:33975-33994 | Msa1339400:intron | 40.0% |
| ATGGCAATAAGCAATGCAAG+CGG | - | tig0003250:34068-34087 | Msa1339400:intergenic | 40.0% | |
| AATTGCACCCCTCATAAGAA+AGG | + | tig0003250:34134-34153 | Msa1339400:CDS | 40.0% | |
| ! | TTGTTTAGTGGGTCTGTTTG+CGG | + | tig0003250:32152-32171 | Msa1339400:CDS | 40.0% |
| !!! | CTGCTTCAGGCTTTGTTTTT+AGG | + | tig0003250:32254-32273 | Msa1339400:CDS | 40.0% |
| !!! | GCTTCAGGCTTTGTTTTTAG+GGG | + | tig0003250:32256-32275 | Msa1339400:CDS | 40.0% |
| !!! | CTTCAGGCTTTGTTTTTAGG+GGG | + | tig0003250:32257-32276 | Msa1339400:CDS | 40.0% |
| !!! | TTCAGGCTTTGTTTTTAGGG+GGG | + | tig0003250:32258-32277 | Msa1339400:CDS | 40.0% |
| !! | TTTAGTGAGTTGGTTCTTGG+TGG | + | tig0003250:32284-32303 | Msa1339400:CDS | 40.0% |
| !!! | ACTCTTTTTTCCTCCTATGC+AGG | + | tig0003250:32343-32362 | Msa1339400:CDS | 40.0% |
| ATGTACTTAACCTGCATAGG+AGG | - | tig0003250:32356-32375 | Msa1339400:intergenic | 40.0% | |
| GCAGGTTAAGTACATCTTGT+TGG | + | tig0003250:32361-32380 | Msa1339400:intron | 40.0% | |
| TTGACACAACTGCTCATGAT+GGG | - | tig0003250:32650-32669 | Msa1339400:intergenic | 40.0% | |
| CCTCCAATTGTTCTTCTACA+CGG | + | tig0003250:32692-32711 | Msa1339400:CDS | 40.0% | |
| TTCTTCTACACGGTTTCGAT+AGG | + | tig0003250:32702-32721 | Msa1339400:CDS | 40.0% | |
| TATCCATTGTTGGAAGAGTC+TGG | + | tig0003250:32834-32853 | Msa1339400:CDS | 40.0% | |
| AAACCAGACTCTTCCAACAA+TGG | - | tig0003250:32840-32859 | Msa1339400:intergenic | 40.0% | |
| !!! | AAGAGTCTGGTTTTGAGACT+TGG | + | tig0003250:32847-32866 | Msa1339400:CDS | 40.0% |
| !!! | AGAGTCTGGTTTTGAGACTT+GGG | + | tig0003250:32848-32867 | Msa1339400:CDS | 40.0% |
| ! | CTTTTACCCCTTTCTCTGTA+AGG | + | tig0003250:32941-32960 | Msa1339400:intron | 40.0% |
| ! | CAAGGAGGAAGATTTTCTGA+TGG | - | tig0003250:33002-33021 | Msa1339400:intergenic | 40.0% |
| ATAGGTTTGATCAACACTCG+GGG | - | tig0003250:33099-33118 | Msa1339400:intergenic | 40.0% | |
| TGTCATTGTCACTGTTGTGT+CGG | - | tig0003250:33147-33166 | Msa1339400:intergenic | 40.0% | |
| TGCATTGTTTCACTGTGTTG+AGG | + | tig0003250:33335-33354 | Msa1339400:intron | 40.0% | |
| GCATTGTTTCACTGTGTTGA+GGG | + | tig0003250:33336-33355 | Msa1339400:intron | 40.0% | |
| TTTGGAAGTCCTACATCAGA+AGG | + | tig0003250:33383-33402 | Msa1339400:CDS | 40.0% | |
| !! | TATCATTGGCCTTCTGATGT+AGG | - | tig0003250:33395-33414 | Msa1339400:intergenic | 40.0% |
| CATCAGAAGGCCAATGATAT+TGG | + | tig0003250:33396-33415 | Msa1339400:CDS | 40.0% | |
| AGAAGGCCAATGATATTGGT+TGG | + | tig0003250:33400-33419 | Msa1339400:CDS | 40.0% | |
| CTTGGTCCAACCAATATCAT+TGG | - | tig0003250:33409-33428 | Msa1339400:intergenic | 40.0% | |
| TCACGTCTTAATATCCACCA+CGG | + | tig0003250:33498-33517 | Msa1339400:intron | 40.0% | |
| TGACGCTAGTGTATATACAG+AGG | + | tig0003250:33619-33638 | Msa1339400:CDS | 40.0% | |
| GACGCTAGTGTATATACAGA+GGG | + | tig0003250:33620-33639 | Msa1339400:CDS | 40.0% | |
| AGTGTATATACAGAGGGAAC+TGG | + | tig0003250:33626-33645 | Msa1339400:CDS | 40.0% | |
| CTTAGCAACCTTACCTAGAT+CGG | + | tig0003250:33652-33671 | Msa1339400:CDS | 40.0% | |
| GGAGATATTTACCCCAACAT+AGG | - | tig0003250:33681-33700 | Msa1339400:intergenic | 40.0% | |
| TCAAGAACTTTGTGCTTGGT+TGG | + | tig0003250:33968-33987 | Msa1339400:intron | 40.0% | |
| !! | CTTTGTGCTTGGTTGGTAAT+AGG | + | tig0003250:33975-33994 | Msa1339400:intron | 40.0% |
| ATGGCAATAAGCAATGCAAG+CGG | - | tig0003250:34068-34087 | Msa1339400:intergenic | 40.0% | |
| AATTGCACCCCTCATAAGAA+AGG | + | tig0003250:34134-34153 | Msa1339400:CDS | 40.0% | |
| AGTGGAGTTTGTGCTGTCAT+AGG | + | tig0003250:32009-32028 | Msa1339400:CDS | 45.0% | |
| GTTTGTGCTGTCATAGGTTC+TGG | + | tig0003250:32015-32034 | Msa1339400:CDS | 45.0% | |
| ! | TGTCATAGGTTCTGGCTGTT+CGG | + | tig0003250:32023-32042 | Msa1339400:CDS | 45.0% |
| ACAACAGCAAAACTACTGCC+TGG | - | tig0003250:32067-32086 | Msa1339400:intergenic | 45.0% | |
| AGTGTCTGTGTTCCTTGTGT+GGG | + | tig0003250:32100-32119 | Msa1339400:CDS | 45.0% | |
| !!! | AGGGGGGTTTTTTAGTGAGT+TGG | + | tig0003250:32274-32293 | Msa1339400:CDS | 45.0% |
| CTTGACACAACTGCTCATGA+TGG | - | tig0003250:32651-32670 | Msa1339400:intergenic | 45.0% | |
| CATCATGAGCAGTTGTGTCA+AGG | + | tig0003250:32649-32668 | Msa1339400:CDS | 45.0% | |
| CCGTGTAGAAGAACAATTGG+AGG | - | tig0003250:32695-32714 | Msa1339400:intergenic | 45.0% | |
| ACTTGGGCTATCGACATACT+TGG | + | tig0003250:32864-32883 | Msa1339400:CDS | 45.0% | |
| GGCTATCGACATACTTGGTT+GGG | + | tig0003250:32869-32888 | Msa1339400:CDS | 45.0% | |
| GCTATCGACATACTTGGTTG+GGG | + | tig0003250:32870-32889 | Msa1339400:CDS | 45.0% | |
| GGTTGGGGTTTCTCTGATTT+AGG | + | tig0003250:32885-32904 | Msa1339400:CDS | 45.0% | |
| AAATCTTCCTCCTTGTGACG+TGG | + | tig0003250:33007-33026 | Msa1339400:CDS | 45.0% | |
| TTTGATACCACGTCACAAGG+AGG | - | tig0003250:33017-33036 | Msa1339400:intergenic | 45.0% | |
| !! | CGTTTTGATACCACGTCACA+AGG | - | tig0003250:33020-33039 | Msa1339400:intergenic | 45.0% |
| GTCATTGTCACTGTTGTGTC+GGG | - | tig0003250:33146-33165 | Msa1339400:intergenic | 45.0% | |
| TAATTGGCTGTCTTCACCGA+TGG | + | tig0003250:33282-33301 | Msa1339400:intron | 45.0% | |
| ! | ATATTGGTTGGACCAAGCCT+CGG | + | tig0003250:33412-33431 | Msa1339400:CDS | 45.0% |
| TCTTTCCAAAAACTGTGCCG+TGG | - | tig0003250:33518-33537 | Msa1339400:intergenic | 45.0% | |
| ATAGGCTACCGATCTAGGTA+AGG | - | tig0003250:33663-33682 | Msa1339400:intergenic | 45.0% | |
| CTAGATCGGTAGCCTATGTT+GGG | + | tig0003250:33666-33685 | Msa1339400:CDS | 45.0% | |
| TAGATCGGTAGCCTATGTTG+GGG | + | tig0003250:33667-33686 | Msa1339400:CDS | 45.0% | |
| TGCTTACACTGTTTGGCATC+AGG | + | tig0003250:33752-33771 | Msa1339400:intron | 45.0% | |
| GCGTAAGGACATGTTAGTGA+AGG | - | tig0003250:33826-33845 | Msa1339400:intergenic | 45.0% | |
| AACTCACATTAGTCCCGTCA+AGG | - | tig0003250:33854-33873 | Msa1339400:intergenic | 45.0% | |
| GCTTGCATTGCTTATTGCCA+TGG | + | tig0003250:34067-34086 | Msa1339400:CDS | 45.0% | |
| TGCATTGCTTATTGCCATGG+TGG | + | tig0003250:34070-34089 | Msa1339400:CDS | 45.0% | |
| GCATTGCTTATTGCCATGGT+GGG | + | tig0003250:34071-34090 | Msa1339400:CDS | 45.0% | |
| AGTGGAGTTTGTGCTGTCAT+AGG | + | tig0003250:32009-32028 | Msa1339400:CDS | 45.0% | |
| GTTTGTGCTGTCATAGGTTC+TGG | + | tig0003250:32015-32034 | Msa1339400:CDS | 45.0% | |
| ! | TGTCATAGGTTCTGGCTGTT+CGG | + | tig0003250:32023-32042 | Msa1339400:CDS | 45.0% |
| ACAACAGCAAAACTACTGCC+TGG | - | tig0003250:32067-32086 | Msa1339400:intergenic | 45.0% | |
| AGTGTCTGTGTTCCTTGTGT+GGG | + | tig0003250:32100-32119 | Msa1339400:CDS | 45.0% | |
| !!! | AGGGGGGTTTTTTAGTGAGT+TGG | + | tig0003250:32274-32293 | Msa1339400:CDS | 45.0% |
| CTTGACACAACTGCTCATGA+TGG | - | tig0003250:32651-32670 | Msa1339400:intergenic | 45.0% | |
| CATCATGAGCAGTTGTGTCA+AGG | + | tig0003250:32649-32668 | Msa1339400:CDS | 45.0% | |
| CCGTGTAGAAGAACAATTGG+AGG | - | tig0003250:32695-32714 | Msa1339400:intergenic | 45.0% | |
| ACTTGGGCTATCGACATACT+TGG | + | tig0003250:32864-32883 | Msa1339400:CDS | 45.0% | |
| GGCTATCGACATACTTGGTT+GGG | + | tig0003250:32869-32888 | Msa1339400:CDS | 45.0% | |
| GCTATCGACATACTTGGTTG+GGG | + | tig0003250:32870-32889 | Msa1339400:CDS | 45.0% | |
| GGTTGGGGTTTCTCTGATTT+AGG | + | tig0003250:32885-32904 | Msa1339400:CDS | 45.0% | |
| AAATCTTCCTCCTTGTGACG+TGG | + | tig0003250:33007-33026 | Msa1339400:CDS | 45.0% | |
| TTTGATACCACGTCACAAGG+AGG | - | tig0003250:33017-33036 | Msa1339400:intergenic | 45.0% | |
| !! | CGTTTTGATACCACGTCACA+AGG | - | tig0003250:33020-33039 | Msa1339400:intergenic | 45.0% |
| GTCATTGTCACTGTTGTGTC+GGG | - | tig0003250:33146-33165 | Msa1339400:intergenic | 45.0% | |
| TAATTGGCTGTCTTCACCGA+TGG | + | tig0003250:33282-33301 | Msa1339400:intron | 45.0% | |
| ! | ATATTGGTTGGACCAAGCCT+CGG | + | tig0003250:33412-33431 | Msa1339400:CDS | 45.0% |
| TCTTTCCAAAAACTGTGCCG+TGG | - | tig0003250:33518-33537 | Msa1339400:intergenic | 45.0% | |
| ATAGGCTACCGATCTAGGTA+AGG | - | tig0003250:33663-33682 | Msa1339400:intergenic | 45.0% | |
| CTAGATCGGTAGCCTATGTT+GGG | + | tig0003250:33666-33685 | Msa1339400:CDS | 45.0% | |
| TAGATCGGTAGCCTATGTTG+GGG | + | tig0003250:33667-33686 | Msa1339400:CDS | 45.0% | |
| TGCTTACACTGTTTGGCATC+AGG | + | tig0003250:33752-33771 | Msa1339400:intron | 45.0% | |
| GCGTAAGGACATGTTAGTGA+AGG | - | tig0003250:33826-33845 | Msa1339400:intergenic | 45.0% | |
| AACTCACATTAGTCCCGTCA+AGG | - | tig0003250:33854-33873 | Msa1339400:intergenic | 45.0% | |
| GCTTGCATTGCTTATTGCCA+TGG | + | tig0003250:34067-34086 | Msa1339400:CDS | 45.0% | |
| TGCATTGCTTATTGCCATGG+TGG | + | tig0003250:34070-34089 | Msa1339400:CDS | 45.0% | |
| GCATTGCTTATTGCCATGGT+GGG | + | tig0003250:34071-34090 | Msa1339400:CDS | 45.0% | |
| !!! | AATATTTTATGTTAATTTTA+TGG | + | tig0003250:34164-34183 | Msa1339400:CDS | 5.0% |
| !!! | AATATTTTATGTTAATTTTA+TGG | + | tig0003250:34164-34183 | Msa1339400:CDS | 5.0% |
| CAGCACAAACTCCACTGAAC+CGG | - | tig0003250:32005-32024 | Msa1339400:intergenic | 50.0% | |
| ! | ATAGGTTCTGGCTGTTCGGT+GGG | + | tig0003250:32027-32046 | Msa1339400:CDS | 50.0% |
| CAGTGTCTGTGTTCCTTGTG+TGG | + | tig0003250:32099-32118 | Msa1339400:CDS | 50.0% | |
| TCTGTGTTCCTTGTGTGGGA+AGG | + | tig0003250:32104-32123 | Msa1339400:CDS | 50.0% | |
| CTGTGTTCCTTGTGTGGGAA+GGG | + | tig0003250:32105-32124 | Msa1339400:CDS | 50.0% | |
| TGTGTTCCTTGTGTGGGAAG+GGG | + | tig0003250:32106-32125 | Msa1339400:CDS | 50.0% | |
| ! | TTTAGTGGGTCTGTTTGCGG+TGG | + | tig0003250:32155-32174 | Msa1339400:CDS | 50.0% |
| ! | TTGTGCTGGTGGTTCTCTGT+GGG | + | tig0003250:32219-32238 | Msa1339400:CDS | 50.0% |
| !! | TGAGTTGGTTCTTGGTGGAG+AGG | + | tig0003250:32289-32308 | Msa1339400:CDS | 50.0% |
| GGGCTATCGACATACTTGGT+TGG | + | tig0003250:32868-32887 | Msa1339400:CDS | 50.0% | |
| !! | CTATGTAGCACCGACACATG+TGG | - | tig0003250:33209-33228 | Msa1339400:intergenic | 50.0% |
| TGGATGGCACATACAGCTTC+TGG | - | tig0003250:33472-33491 | Msa1339400:intergenic | 50.0% | |
| ! | ATCCACCACGGCACAGTTTT+TGG | + | tig0003250:33510-33529 | Msa1339400:intron | 50.0% |
| TTCCAAAAACTGTGCCGTGG+TGG | - | tig0003250:33515-33534 | Msa1339400:intergenic | 50.0% | |
| CCAACATAGGCTACCGATCT+AGG | - | tig0003250:33668-33687 | Msa1339400:intergenic | 50.0% | |
| CCTAGATCGGTAGCCTATGT+TGG | + | tig0003250:33665-33684 | Msa1339400:CDS | 50.0% | |
| TCCTTACGCACCATCCTTGA+CGG | + | tig0003250:33837-33856 | Msa1339400:CDS | 50.0% | |
| CACATTAGTCCCGTCAAGGA+TGG | - | tig0003250:33850-33869 | Msa1339400:intergenic | 50.0% | |
| ACAGTAGCATCATCCCACCA+TGG | - | tig0003250:34087-34106 | Msa1339400:intergenic | 50.0% | |
| CAGCACAAACTCCACTGAAC+CGG | - | tig0003250:32005-32024 | Msa1339400:intergenic | 50.0% | |
| ! | ATAGGTTCTGGCTGTTCGGT+GGG | + | tig0003250:32027-32046 | Msa1339400:CDS | 50.0% |
| CAGTGTCTGTGTTCCTTGTG+TGG | + | tig0003250:32099-32118 | Msa1339400:CDS | 50.0% | |
| TCTGTGTTCCTTGTGTGGGA+AGG | + | tig0003250:32104-32123 | Msa1339400:CDS | 50.0% | |
| CTGTGTTCCTTGTGTGGGAA+GGG | + | tig0003250:32105-32124 | Msa1339400:CDS | 50.0% | |
| TGTGTTCCTTGTGTGGGAAG+GGG | + | tig0003250:32106-32125 | Msa1339400:CDS | 50.0% | |
| ! | TTTAGTGGGTCTGTTTGCGG+TGG | + | tig0003250:32155-32174 | Msa1339400:CDS | 50.0% |
| ! | TTGTGCTGGTGGTTCTCTGT+GGG | + | tig0003250:32219-32238 | Msa1339400:CDS | 50.0% |
| !! | TGAGTTGGTTCTTGGTGGAG+AGG | + | tig0003250:32289-32308 | Msa1339400:CDS | 50.0% |
| GGGCTATCGACATACTTGGT+TGG | + | tig0003250:32868-32887 | Msa1339400:CDS | 50.0% | |
| !! | CTATGTAGCACCGACACATG+TGG | - | tig0003250:33209-33228 | Msa1339400:intergenic | 50.0% |
| TGGATGGCACATACAGCTTC+TGG | - | tig0003250:33472-33491 | Msa1339400:intergenic | 50.0% | |
| ! | ATCCACCACGGCACAGTTTT+TGG | + | tig0003250:33510-33529 | Msa1339400:intron | 50.0% |
| TTCCAAAAACTGTGCCGTGG+TGG | - | tig0003250:33515-33534 | Msa1339400:intergenic | 50.0% | |
| CCAACATAGGCTACCGATCT+AGG | - | tig0003250:33668-33687 | Msa1339400:intergenic | 50.0% | |
| CCTAGATCGGTAGCCTATGT+TGG | + | tig0003250:33665-33684 | Msa1339400:CDS | 50.0% | |
| TCCTTACGCACCATCCTTGA+CGG | + | tig0003250:33837-33856 | Msa1339400:CDS | 50.0% | |
| CACATTAGTCCCGTCAAGGA+TGG | - | tig0003250:33850-33869 | Msa1339400:intergenic | 50.0% | |
| ACAGTAGCATCATCCCACCA+TGG | - | tig0003250:34087-34106 | Msa1339400:intergenic | 50.0% | |
| !! | CTTTGGTTCTGCCGGTTCAG+TGG | + | tig0003250:31991-32010 | Msa1339400:CDS | 55.0% |
| ! | CATAGGTTCTGGCTGTTCGG+TGG | + | tig0003250:32026-32045 | Msa1339400:CDS | 55.0% |
| GTGTTCCTTGTGTGGGAAGG+GGG | + | tig0003250:32107-32126 | Msa1339400:CDS | 55.0% | |
| TGCGAGCCTGTATACTGTCC+TGG | + | tig0003250:32191-32210 | Msa1339400:CDS | 55.0% | |
| ACCACGCCAGGACAGTATAC+AGG | - | tig0003250:32200-32219 | Msa1339400:intergenic | 55.0% | |
| ! | GTTGTGCTGGTGGTTCTCTG+TGG | + | tig0003250:32218-32237 | Msa1339400:CDS | 55.0% |
| !! | GAGAGGTGTTCCTTGCGTCA+AGG | + | tig0003250:32306-32325 | Msa1339400:CDS | 55.0% |
| GAGCAGTTGTGTCAAGGCAC+TGG | + | tig0003250:32655-32674 | Msa1339400:CDS | 55.0% | |
| !! | CAAGGCACTGGTGCAGAACA+AGG | + | tig0003250:32667-32686 | Msa1339400:CDS | 55.0% |
| CAATGGCAACAGCAGAACCG+AGG | - | tig0003250:33432-33451 | Msa1339400:intergenic | 55.0% | |
| CCTTACGCACCATCCTTGAC+GGG | + | tig0003250:33838-33857 | Msa1339400:CDS | 55.0% | |
| CAAGCGGCCCACCTATAAAG+AGG | - | tig0003250:34052-34071 | Msa1339400:intergenic | 55.0% | |
| !! | CTTTGGTTCTGCCGGTTCAG+TGG | + | tig0003250:31991-32010 | Msa1339400:CDS | 55.0% |
| ! | CATAGGTTCTGGCTGTTCGG+TGG | + | tig0003250:32026-32045 | Msa1339400:CDS | 55.0% |
| GTGTTCCTTGTGTGGGAAGG+GGG | + | tig0003250:32107-32126 | Msa1339400:CDS | 55.0% | |
| TGCGAGCCTGTATACTGTCC+TGG | + | tig0003250:32191-32210 | Msa1339400:CDS | 55.0% | |
| ACCACGCCAGGACAGTATAC+AGG | - | tig0003250:32200-32219 | Msa1339400:intergenic | 55.0% | |
| ! | GTTGTGCTGGTGGTTCTCTG+TGG | + | tig0003250:32218-32237 | Msa1339400:CDS | 55.0% |
| !! | GAGAGGTGTTCCTTGCGTCA+AGG | + | tig0003250:32306-32325 | Msa1339400:CDS | 55.0% |
| GAGCAGTTGTGTCAAGGCAC+TGG | + | tig0003250:32655-32674 | Msa1339400:CDS | 55.0% | |
| !! | CAAGGCACTGGTGCAGAACA+AGG | + | tig0003250:32667-32686 | Msa1339400:CDS | 55.0% |
| CAATGGCAACAGCAGAACCG+AGG | - | tig0003250:33432-33451 | Msa1339400:intergenic | 55.0% | |
| CCTTACGCACCATCCTTGAC+GGG | + | tig0003250:33838-33857 | Msa1339400:CDS | 55.0% | |
| CAAGCGGCCCACCTATAAAG+AGG | - | tig0003250:34052-34071 | Msa1339400:intergenic | 55.0% | |
| !! | GGTAGGGGCTTTGGTTCTGC+CGG | + | tig0003250:31983-32002 | Msa1339400:CDS | 60.0% |
| !! | TGGCTGTTCGGTGGGCTGTT+AGG | + | tig0003250:32035-32054 | Msa1339400:CDS | 60.0% |
| ! | TGGGCTGTTAGGCGTTGTCC+AGG | + | tig0003250:32046-32065 | Msa1339400:CDS | 60.0% |
| ATCTGCCCCCTTCCCACACA+AGG | - | tig0003250:32115-32134 | Msa1339400:intergenic | 60.0% | |
| GGTCTGTTTGCGGTGGCACT+TGG | + | tig0003250:32162-32181 | Msa1339400:CDS | 60.0% | |
| GCCTGTATACTGTCCTGGCG+TGG | + | tig0003250:32196-32215 | Msa1339400:CDS | 60.0% | |
| ATGGAGAGGGCCTTGACGCA+AGG | - | tig0003250:32319-32338 | Msa1339400:intergenic | 60.0% | |
| GCAACAGCAGAACCGAGGCT+TGG | - | tig0003250:33427-33446 | Msa1339400:intergenic | 60.0% | |
| CCCGTCAAGGATGGTGCGTA+AGG | - | tig0003250:33841-33860 | Msa1339400:intergenic | 60.0% | |
| !! | GGTAGGGGCTTTGGTTCTGC+CGG | + | tig0003250:31983-32002 | Msa1339400:CDS | 60.0% |
| !! | TGGCTGTTCGGTGGGCTGTT+AGG | + | tig0003250:32035-32054 | Msa1339400:CDS | 60.0% |
| ! | TGGGCTGTTAGGCGTTGTCC+AGG | + | tig0003250:32046-32065 | Msa1339400:CDS | 60.0% |
| ATCTGCCCCCTTCCCACACA+AGG | - | tig0003250:32115-32134 | Msa1339400:intergenic | 60.0% | |
| GGTCTGTTTGCGGTGGCACT+TGG | + | tig0003250:32162-32181 | Msa1339400:CDS | 60.0% | |
| GCCTGTATACTGTCCTGGCG+TGG | + | tig0003250:32196-32215 | Msa1339400:CDS | 60.0% | |
| ATGGAGAGGGCCTTGACGCA+AGG | - | tig0003250:32319-32338 | Msa1339400:intergenic | 60.0% | |
| GCAACAGCAGAACCGAGGCT+TGG | - | tig0003250:33427-33446 | Msa1339400:intergenic | 60.0% | |
| CCCGTCAAGGATGGTGCGTA+AGG | - | tig0003250:33841-33860 | Msa1339400:intergenic | 60.0% | |
| CTGTCCTGGCGTGGTTGTGC+TGG | + | tig0003250:32205-32224 | Msa1339400:CDS | 65.0% | |
| TCCTGGCGTGGTTGTGCTGG+TGG | + | tig0003250:32208-32227 | Msa1339400:CDS | 65.0% | |
| ACCACCAGCACAACCACGCC+AGG | - | tig0003250:32212-32231 | Msa1339400:intergenic | 65.0% | |
| CTGTCCTGGCGTGGTTGTGC+TGG | + | tig0003250:32205-32224 | Msa1339400:CDS | 65.0% | |
| TCCTGGCGTGGTTGTGCTGG+TGG | + | tig0003250:32208-32227 | Msa1339400:CDS | 65.0% | |
| ACCACCAGCACAACCACGCC+AGG | - | tig0003250:32212-32231 | Msa1339400:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003250 | gene | 31978 | 34252 | 31978 | ID=Msa1339400;Name=Msa1339400 |
| tig0003250 | mRNA | 31978 | 34252 | 31978 | ID=Msa1339400-mRNA-1;Parent=Msa1339400;Name=Msa1339400-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.71|0.75|1|1|1|8|34|346 |
| tig0003250 | exon | 31978 | 32364 | 31978 | ID=Msa1339400-mRNA-1:exon:2110;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 32629 | 32723 | 32629 | ID=Msa1339400-mRNA-1:exon:2111;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 32809 | 32906 | 32809 | ID=Msa1339400-mRNA-1:exon:2112;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 33006 | 33028 | 33006 | ID=Msa1339400-mRNA-1:exon:2113;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 33382 | 33477 | 33382 | ID=Msa1339400-mRNA-1:exon:2114;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 33599 | 33688 | 33599 | ID=Msa1339400-mRNA-1:exon:2115;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 33774 | 33866 | 33774 | ID=Msa1339400-mRNA-1:exon:2116;Parent=Msa1339400-mRNA-1 |
| tig0003250 | exon | 34060 | 34252 | 34060 | ID=Msa1339400-mRNA-1:exon:2117;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 31978 | 32364 | 31978 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 32629 | 32723 | 32629 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 32809 | 32906 | 32809 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 33006 | 33028 | 33006 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 33382 | 33477 | 33382 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 33599 | 33688 | 33599 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 33774 | 33866 | 33774 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | CDS | 34060 | 34218 | 34060 | ID=Msa1339400-mRNA-1:cds;Parent=Msa1339400-mRNA-1 |
| tig0003250 | three_prime_UTR | 34219 | 34252 | 34219 | ID=Msa1339400-mRNA-1:three_prime_utr;Parent=Msa1339400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
