AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413450 MtrunA17_Chr3g0105881 95.086 407 10 2 1 407 1 397 0.0 770
Msa0413450 MtrunA17_Chr3g0086371 34.884 258 154 5 150 405 15 260 1.95e-46 160
Msa0413450 MtrunA17_Chr4g0058541 36.111 144 82 3 222 364 220 354 4.00e-16 80.1
Msa0413450 MtrunA17_Chr4g0058541 30.522 249 139 10 157 395 246 470 4.98e-15 76.6
Msa0413450 MtrunA17_Chr5g0407461 32.308 195 119 4 170 364 269 450 2.92e-15 77.8
Msa0413450 MtrunA17_Chr5g0407461 27.315 216 137 6 158 366 298 500 2.69e-14 74.7
Msa0413450 MtrunA17_Chr5g0407461 27.749 191 120 5 167 353 358 534 2.22e-11 65.5
Msa0413450 MtrunA17_Chr3g0116991 32.143 196 116 6 162 353 253 435 4.48e-15 77.0
Msa0413450 MtrunA17_Chr3g0116991 35.417 144 83 3 222 364 217 351 1.48e-14 75.5
Msa0413450 MtrunA17_Chr3g0116991 31.797 217 101 6 183 365 227 430 4.92e-13 70.5
Msa0413450 MtrunA17_Chr4g0052921 33.178 214 127 9 158 365 324 527 2.90e-14 75.1
Msa0413450 MtrunA17_Chr7g0218991 33.721 172 101 6 194 361 127 289 1.32e-13 72.8
Msa0413450 MtrunA17_Chr8g0370111 28.415 183 117 4 184 364 317 487 4.11e-13 70.9
Msa0413450 MtrunA17_Chr8g0370111 31.361 169 105 2 179 347 289 446 7.27e-13 70.1
Msa0413450 MtrunA17_Chr8g0370111 31.250 176 109 3 189 364 276 439 1.31e-12 69.3
Msa0413450 MtrunA17_Chr4g0071581 28.507 221 140 7 138 354 57 263 2.19e-12 67.8
Msa0413450 MtrunA17_Chr3g0144581 35.338 133 81 5 246 374 136 267 2.46e-12 68.9
Msa0413450 MtrunA17_Chr7g0237821 29.258 229 128 8 170 372 257 477 3.00e-12 68.6
Msa0413450 MtrunA17_Chr7g0237821 32.000 200 114 6 169 347 159 357 3.06e-12 68.6
Msa0413450 MtrunA17_Chr2g0317831 28.804 184 102 4 191 358 21 191 3.79e-12 68.2
Msa0413450 MtrunA17_Chr1g0165141 31.905 210 127 9 146 349 213 412 6.54e-12 67.8
Msa0413450 MtrunA17_Chr5g0447001 33.099 142 88 4 234 368 243 384 7.02e-12 67.4
Msa0413450 MtrunA17_Chr7g0257621 29.388 245 147 10 159 380 234 475 7.28e-12 67.4
Msa0413450 MtrunA17_Chr7g0257621 27.004 237 128 8 180 372 135 370 4.40e-11 65.1
Msa0413450 MtrunA17_Chr5g0412701 35.000 160 90 4 188 344 228 376 7.39e-12 66.6
Msa0413450 MtrunA17_Chr4g0058761 32.857 210 126 7 170 373 447 647 7.82e-12 67.4
Msa0413450 MtrunA17_Chr4g0054721 32.258 186 112 4 160 344 222 394 1.61e-11 65.9
Msa0413450 MtrunA17_Chr4g0054721 29.609 179 111 4 183 357 195 362 1.84e-11 65.9
Msa0413450 MtrunA17_Chr2g0298891 28.646 192 120 5 167 354 101 279 1.74e-11 65.1
Msa0413450 MtrunA17_Chr4g0051961 31.280 211 121 8 170 359 257 464 3.27e-11 65.5
Msa0413450 MtrunA17_Chr4g0034221 29.944 177 117 2 188 364 89 258 8.15e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413450 AT2G30105.1 56.836 373 148 3 38 407 11 373 1.94e-149 428
Msa0413450 AT5G07910.1 37.066 259 151 4 149 406 15 262 8.08e-41 145
Msa0413450 AT4G26050.1 30.045 223 132 8 138 353 88 293 1.23e-15 78.6
Msa0413450 AT3G26500.1 29.583 240 138 9 160 372 165 400 5.77e-15 77.0
Msa0413450 AT4G20140.1 37.705 183 100 8 194 372 352 524 2.23e-13 72.8
Msa0413450 AT2G17440.1 24.837 306 191 7 71 347 115 410 2.61e-13 72.0
Msa0413450 AT2G17440.1 28.333 180 115 4 187 364 284 451 2.13e-11 65.9
Msa0413450 AT2G17440.1 28.877 187 115 5 162 344 306 478 5.52e-11 64.7
Msa0413450 AT4G35470.1 30.270 185 115 4 184 366 297 469 3.18e-13 71.6
Msa0413450 AT4G35470.1 33.143 175 105 3 179 352 269 432 1.60e-12 69.7
Msa0413450 AT4G35470.2 30.270 185 115 4 184 366 297 469 3.82e-13 71.6
Msa0413450 AT4G35470.2 33.143 175 105 3 179 352 269 432 1.50e-12 69.7
Msa0413450 AT1G12970.1 32.212 208 119 8 160 349 166 369 4.74e-13 70.9
Msa0413450 AT1G12970.1 34.783 138 82 3 228 364 182 312 2.21e-12 68.9
Msa0413450 AT1G12970.1 29.146 199 121 6 157 347 204 390 8.82e-11 63.9
Msa0413450 AT3G11330.1 34.028 144 85 3 222 364 215 349 5.08e-13 70.9
Msa0413450 AT3G11330.1 35.829 187 101 7 183 364 225 397 9.75e-12 67.0
Msa0413450 AT3G11330.1 27.843 255 151 8 120 353 191 433 2.27e-11 65.9
Msa0413450 AT5G48940.1 31.780 236 129 10 170 375 170 403 6.03e-13 71.2
Msa0413450 AT5G44700.1 34.426 183 106 8 194 372 353 525 6.94e-13 71.2
Msa0413450 AT3G15410.1 30.120 166 92 3 191 343 21 175 7.13e-13 70.9
Msa0413450 AT3G15410.1 33.333 189 100 4 184 365 119 288 1.77e-12 69.3
Msa0413450 AT3G15410.2 33.333 189 100 4 184 365 125 294 1.84e-12 69.3
Msa0413450 AT3G15410.2 31.429 140 85 2 204 343 53 181 6.29e-12 67.8
Msa0413450 AT1G08590.1 28.470 281 155 11 149 395 46 314 5.03e-12 68.6
Msa0413450 AT5G05850.1 31.551 187 111 5 167 349 262 435 6.16e-12 67.8
Msa0413450 AT5G05850.1 35.829 187 101 7 183 364 231 403 6.27e-11 64.3
Msa0413450 AT4G29880.1 30.000 220 136 7 138 353 84 289 1.30e-11 66.2
Msa0413450 AT5G56040.2 30.978 184 114 7 170 349 257 431 2.29e-11 66.2
Msa0413450 AT5G56040.1 30.978 184 114 7 170 349 257 431 3.45e-11 65.9

Find 92 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTTCCTATATGATTAT+TGG 0.126241 3_2:+57935587 Msa0413450:three_prime_UTR
GTCTAATATTTGCTGAATTA+TGG 0.152293 3_2:+57935640 Msa0413450:three_prime_UTR
CAATAGTTATTTCTGTATTA+TGG 0.188941 3_2:-57935190 None:intergenic
ACCACTGAACTTCACGCTTA+TGG 0.247375 3_2:-57930810 None:intergenic
TGTTCAGAAAACGTTGAAAA+TGG 0.248715 3_2:+57930745 Msa0413450:CDS
GCTGGCCTTCCTGATGAAAT+AGG 0.255143 3_2:+57933839 Msa0413450:CDS
TGTTGGATGAATCAATTAAC+TGG 0.277999 3_2:+57933598 Msa0413450:CDS
AGTAAAATCAGTGAATTTAT+AGG 0.289858 3_2:+57934143 Msa0413450:CDS
AGTTATGCTTATGGCTTCTC+AGG 0.308207 3_2:+57931074 Msa0413450:CDS
CCTGATGAGGTTTGGATTTG+TGG 0.315655 3_2:+57933365 Msa0413450:CDS
AAGGCCAGCTAATTGATTAT+TGG 0.315782 3_2:-57933825 None:intergenic
TCTTGAAAGCCAACAATAAT+AGG 0.326003 3_2:+57933882 Msa0413450:CDS
GAACTTCACGCTTATGGTTA+TGG 0.329665 3_2:-57930804 None:intergenic
AAGAGACTTGAGTTCTTTGA+TGG 0.342074 3_2:-57930867 None:intergenic
TTCATTGTACCTATTATTGT+TGG 0.358586 3_2:-57933891 None:intergenic
TGGCTATCTTTCCTCGTTGT+TGG 0.358694 3_2:-57931882 None:intergenic
GCTGCTTCAAATTTGAGAAA+TGG 0.364821 3_2:+57931045 Msa0413450:CDS
ACCATGTAACTCACCGGTTC+TGG 0.367890 3_2:-57933665 None:intergenic
GTAAGTTGTGAAATTTCAAC+AGG 0.371793 3_2:-57933437 None:intergenic
TTGTTTAACAGGTAAGGTTT+TGG 0.373873 3_2:+57931005 Msa0413450:intron
TATTAATTCTAATAACTTGT+TGG 0.379499 3_2:+57933581 Msa0413450:CDS
GTAAAATCAGTGAATTTATA+GGG 0.387035 3_2:+57934144 Msa0413450:CDS
CTGCTTCAAATTTGAGAAAT+GGG 0.396764 3_2:+57931046 Msa0413450:CDS
AGGCCATACCTGATGAGGTT+TGG 0.398152 3_2:+57933357 Msa0413450:intron
GTCAGATGCCCTATTTCATC+AGG 0.417982 3_2:-57933848 None:intergenic
TCACACATTGATCTTCTTCA+AGG 0.421656 3_2:+57930701 Msa0413450:CDS
CCACAAATCCAAACCTCATC+AGG 0.424745 3_2:-57933365 None:intergenic
AATATTTCCAATAATCATAT+AGG 0.426974 3_2:-57935594 None:intergenic
TAATGATGTGAAGAAAATTC+CGG 0.428289 3_2:+57931917 Msa0413450:CDS
ACAACTTTGCCATCTGCGTT+GGG 0.432785 3_2:+57933770 Msa0413450:CDS
TGGGTCTAAAGTTATGCTTA+TGG 0.436621 3_2:+57931065 Msa0413450:CDS
TTGCTTGCAGCTTTCCACCT+TGG 0.442166 3_2:+57935163 Msa0413450:CDS
TACTATCATTGAACCAGAAC+CGG 0.446260 3_2:+57933652 Msa0413450:CDS
TGATTGAGGTGAAATTGAAA+TGG 0.448406 3_2:-57930843 None:intergenic
TGGGATCGATAACCTCTTTG+AGG 0.453759 3_2:+57933789 Msa0413450:CDS
GCTTCTCAGGGTTTATATCA+AGG 0.455521 3_2:+57931087 Msa0413450:CDS
CTGGCCTTCCTGATGAAATA+GGG 0.456466 3_2:+57933840 Msa0413450:CDS
GGTTCAATGATAGTACTGTT+AGG 0.458087 3_2:-57933644 None:intergenic
AACAACTTTGCCATCTGCGT+TGG 0.464316 3_2:+57933769 Msa0413450:CDS
CTAAAACTACTGAATGTCTC+TGG 0.466762 3_2:-57934379 None:intergenic
CTTTGCATCTTAGTAACAAT+GGG 0.467481 3_2:+57935108 Msa0413450:CDS
TTGGAACGGTGGAAAGCAAC+AGG 0.470716 3_2:+57931951 Msa0413450:CDS
ACCACACCAGAGGCATGTTA+AGG 0.472651 3_2:-57935505 None:intergenic
GATTGAGGTGAAATTGAAAT+GGG 0.477695 3_2:-57930842 None:intergenic
TTTCTTTCAGTTTGAAGGAT+GGG 0.479136 3_2:+57935334 Msa0413450:intron
TTGAAATTTCACAACTTACT+CGG 0.495415 3_2:+57933441 Msa0413450:CDS
AACATTCCTTAACATGCCTC+TGG 0.497077 3_2:+57935499 Msa0413450:three_prime_UTR
GGGATCGATAACCTCTTTGA+GGG 0.505620 3_2:+57933790 Msa0413450:CDS
AACTCTCAGAAAGCGACAAA+CGG 0.507282 3_2:+57933733 Msa0413450:intron
GTCTCCAATAATCAATTAGC+TGG 0.517863 3_2:+57933821 Msa0413450:CDS
CCTCTGGTGTGGTGGCAGAT+TGG 0.518911 3_2:+57935515 Msa0413450:three_prime_UTR
CTTCTCAGGGTTTATATCAA+GGG 0.518957 3_2:+57931088 Msa0413450:CDS
TTGGCCCCTTGGAAGAACAT+TGG 0.519841 3_2:-57930903 None:intergenic
CTGCCACCAATGTTCTTCCA+AGG 0.522373 3_2:+57930897 Msa0413450:CDS
TCCTGTCTTGAAGAGAGCTC+AGG 0.525916 3_2:+57931854 Msa0413450:CDS
TAAATAGGCCATACCTGATG+AGG 0.529297 3_2:+57933352 Msa0413450:intron
GCCTGAGCTCTCTTCAAGAC+AGG 0.529659 3_2:-57931855 None:intergenic
CATCATTACTAGAGCTTGAG+TGG 0.530604 3_2:-57931902 None:intergenic
TGAAATTGAAATGGGTATTG+TGG 0.530969 3_2:-57930834 None:intergenic
GTTATGCTTATGGCTTCTCA+GGG 0.531457 3_2:+57931075 Msa0413450:CDS
AGTTCTTTGATGGTTGATTG+AGG 0.535316 3_2:-57930857 None:intergenic
AGCATTGTCTGAATGCAACT+TGG 0.542609 3_2:+57931980 Msa0413450:CDS
GCCCCTTGGAAGAACATTGG+TGG 0.542876 3_2:-57930900 None:intergenic
TTCTGTATTATGGAGATCCA+AGG 0.552344 3_2:-57935180 None:intergenic
AACTATTGATATTCTTCGTG+AGG 0.553098 3_2:+57935205 Msa0413450:CDS
GTTTCTGATGCTTTGAGCGA+CGG 0.553617 3_2:-57935373 None:intergenic
ATTGTCTGAATGCAACTTGG+AGG 0.555976 3_2:+57931983 Msa0413450:CDS
GCTTTGCATCTTAGTAACAA+TGG 0.556237 3_2:+57935107 Msa0413450:CDS
CTTGGAAGAACATTGGTGGC+AGG 0.562297 3_2:-57930896 None:intergenic
TTAACATGCCTCTGGTGTGG+TGG 0.562298 3_2:+57935507 Msa0413450:three_prime_UTR
AATCCAAACCTCATCAGGTA+TGG 0.568325 3_2:-57933360 None:intergenic
ACCGTACCTCAACAAGAGAA+TGG 0.569320 3_2:-57934172 None:intergenic
TGCCACCAATGTTCTTCCAA+GGG 0.570209 3_2:+57930898 Msa0413450:CDS
GAAATGCCATTCTCTTGTTG+AGG 0.574653 3_2:+57934166 Msa0413450:CDS
TTCTCAGGGTTTATATCAAG+GGG 0.575770 3_2:+57931089 Msa0413450:CDS
TCCTTAACATGCCTCTGGTG+TGG 0.578270 3_2:+57935504 Msa0413450:three_prime_UTR
AAACAAATAGAATTCCGAGT+TGG 0.580256 3_2:+57935392 Msa0413450:CDS
TTTGGAAGATTCTGTGACAG+TGG 0.587012 3_2:+57931023 Msa0413450:CDS
GTTATCGATCCCAACGCAGA+TGG 0.592731 3_2:-57933779 None:intergenic
GTTGGATGAATCAATTAACT+GGG 0.623225 3_2:+57933599 Msa0413450:CDS
ACCATAAGCGTGAAGTTCAG+TGG 0.625008 3_2:+57930809 Msa0413450:CDS
GATGCCCTATTTCATCAGGA+AGG 0.628283 3_2:-57933844 None:intergenic
AATCTCTAGAAACTCCAACT+CGG 0.645232 3_2:-57935406 None:intergenic
TTGAAAATGGAAATCGATGG+CGG 0.645679 3_2:+57930758 Msa0413450:CDS
GCAAGAGTTCTACATTGCAA+CGG 0.654515 3_2:+57933395 Msa0413450:CDS
TGTATTATGGAGATCCAAGG+TGG 0.659626 3_2:-57935177 None:intergenic
GCCACCAATGTTCTTCCAAG+GGG 0.666344 3_2:+57930899 Msa0413450:CDS
CTCAGGCTGTTCCAACAACG+AGG 0.670414 3_2:+57931871 Msa0413450:CDS
GACGTGCAGCTCCCTCAAAG+AGG 0.673870 3_2:-57933801 None:intergenic
CCAATCTGCCACCACACCAG+AGG 0.675773 3_2:-57935515 None:intergenic
ACGTTGAAAATGGAAATCGA+TGG 0.691196 3_2:+57930755 Msa0413450:CDS
TAAGTTGTGAAATTTCAACA+GGG 0.745389 3_2:-57933436 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAAAAAATTAAAATTAC+CGG + chr3_2:57933212-57933231 Msa0413450:intron 10.0%
!!! TTTGCAATTTTAATTTAAAT+AGG + chr3_2:57933337-57933356 Msa0413450:intron 10.0%
!!! TGTTTTTTTATTAACTTAGT+TGG + chr3_2:57932422-57932441 Msa0413450:intron 15.0%
!!! CATATTTTTCCATAATTTTA+AGG + chr3_2:57932557-57932576 Msa0413450:intron 15.0%
!! CAAAAAATCTTTAAATTACA+AGG - chr3_2:57933034-57933053 None:intergenic 15.0%
!! ATATCGAATTTCAAAATTTA+AGG - chr3_2:57933148-57933167 None:intergenic 15.0%
!! TCTAAAAAATTAAAATTACC+GGG + chr3_2:57933213-57933232 Msa0413450:intron 15.0%
!!! ATCTATAAATTTTTTCTCAT+TGG + chr3_2:57933506-57933525 Msa0413450:intron 15.0%
!!! TATTAATTCTAATAACTTGT+TGG + chr3_2:57933581-57933600 Msa0413450:CDS 15.0%
!! ATTTCACTTATGATTTAATT+CGG - chr3_2:57934263-57934282 None:intergenic 15.0%
!!! CAATTTTTTTTTTGTTTTTG+TGG + chr3_2:57934318-57934337 Msa0413450:intron 15.0%
!! TTGTAATTTCGAAAAATTTA+AGG - chr3_2:57934500-57934519 None:intergenic 15.0%
!! TACATTCAATATTAAACTAA+TGG + chr3_2:57934806-57934825 Msa0413450:intron 15.0%
!! AATATTTCCAATAATCATAT+AGG - chr3_2:57935597-57935616 None:intergenic 15.0%
!! CTATTTACTCAAATTATTAC+CGG - chr3_2:57931259-57931278 None:intergenic 20.0%
!!! ATGCTTTTAATTTGAAGTAT+TGG + chr3_2:57931329-57931348 Msa0413450:intron 20.0%
!!! GTTATTTTCATAAGCTATTA+TGG + chr3_2:57931437-57931456 Msa0413450:intron 20.0%
!! TCAAATATGTCATTCTAAAT+AGG + chr3_2:57931562-57931581 Msa0413450:intron 20.0%
!! AATTGCTTATTTCATAATAC+AGG + chr3_2:57932209-57932228 Msa0413450:intron 20.0%
!!! TTTTTATTAACTTAGTTGGA+AGG + chr3_2:57932426-57932445 Msa0413450:intron 20.0%
!!! TGAATATTACATTTTGCAAA+GGG + chr3_2:57932763-57932782 Msa0413450:intron 20.0%
!!! TATATAAATTTTATACCGGA+AGG + chr3_2:57932914-57932933 Msa0413450:intron 20.0%
!!! ATATAAATTTTATACCGGAA+GGG + chr3_2:57932915-57932934 Msa0413450:intron 20.0%
!! AATCCAAAAAAAACATTAGA+GGG - chr3_2:57933007-57933026 None:intergenic 20.0%
!! AAATCTTTAAATTACAAGGT+TGG - chr3_2:57933030-57933049 None:intergenic 20.0%
!! AGAAGAATCTTTAAATTACA+AGG + chr3_2:57933184-57933203 Msa0413450:intron 20.0%
!! CTAAAAAATTAAAATTACCG+GGG + chr3_2:57933214-57933233 Msa0413450:intron 20.0%
!! TAAAAAATTAAAATTACCGG+GGG + chr3_2:57933215-57933234 Msa0413450:intron 20.0%
!! TTGACAAGCAATTAAAATTA+GGG - chr3_2:57933287-57933306 None:intergenic 20.0%
!! ATTGACAAGCAATTAAAATT+AGG - chr3_2:57933288-57933307 None:intergenic 20.0%
!! AGTAAAATCAGTGAATTTAT+AGG + chr3_2:57934143-57934162 Msa0413450:CDS 20.0%
!! GTAAAATCAGTGAATTTATA+GGG + chr3_2:57934144-57934163 Msa0413450:CDS 20.0%
!!! GGATTTTTTTTTTGCATTTT+TGG + chr3_2:57934626-57934645 Msa0413450:intron 20.0%
!! CTTAACTCATTAGATTTAAA+GGG - chr3_2:57934780-57934799 None:intergenic 20.0%
!! ACTTAACTCATTAGATTTAA+AGG - chr3_2:57934781-57934800 None:intergenic 20.0%
!! ATTCAATATTAAACTAATGG+TGG + chr3_2:57934809-57934828 Msa0413450:intron 20.0%
!!! CAATAGTTATTTCTGTATTA+TGG - chr3_2:57935193-57935212 None:intergenic 20.0%
!!! AAGTATTGCATTTTAATTGA+AGG + chr3_2:57935265-57935284 Msa0413450:intron 20.0%
!!! TATTGGAAATATTTTTCTAG+TGG + chr3_2:57935604-57935623 Msa0413450:three_prime_UTR 20.0%
! TGAATGTTGAATTGTTTAAC+AGG + chr3_2:57930994-57931013 Msa0413450:intron 25.0%
!!! TCATAGATTATAGTCTTGTT+TGG + chr3_2:57931356-57931375 Msa0413450:intron 25.0%
! ATAAGTGTTTATCGTATAAG+TGG + chr3_2:57931407-57931426 Msa0413450:intron 25.0%
! AAGCTATTATGGAGAATTTA+TGG + chr3_2:57931448-57931467 Msa0413450:intron 25.0%
! TTATGGTTGAGGTAAATAAT+TGG + chr3_2:57931595-57931614 Msa0413450:intron 25.0%
! TATGGTTGAGGTAAATAATT+GGG + chr3_2:57931596-57931615 Msa0413450:intron 25.0%
! TTATTATGCTACTCAGTAAA+AGG + chr3_2:57931728-57931747 Msa0413450:intron 25.0%
!!! AGATTTCATATGTTTTGTTC+AGG + chr3_2:57931827-57931846 Msa0413450:intron 25.0%
! TAATGATGTGAAGAAAATTC+CGG + chr3_2:57931917-57931936 Msa0413450:CDS 25.0%
!! TTTTTATGTCAACTGGAAAT+TGG + chr3_2:57932053-57932072 Msa0413450:intron 25.0%
!! TTTTATGTCAACTGGAAATT+GGG + chr3_2:57932054-57932073 Msa0413450:intron 25.0%
! TGATTTGATGAACTAGTAAA+TGG - chr3_2:57932268-57932287 None:intergenic 25.0%
! TTAGTTATTCGAACGTTTAA+AGG + chr3_2:57932311-57932330 Msa0413450:intron 25.0%
! TAGTTATTCGAACGTTTAAA+GGG + chr3_2:57932312-57932331 Msa0413450:intron 25.0%
! TCTAATATGAATTTAGTCAC+AGG - chr3_2:57932381-57932400 None:intergenic 25.0%
! TTATGGAAAAATATGAGCAA+AGG - chr3_2:57932552-57932571 None:intergenic 25.0%
!! TTTTGCGAACCTTAAAATTA+TGG - chr3_2:57932569-57932588 None:intergenic 25.0%
! TGACTAAACATAGTAATACT+TGG - chr3_2:57932706-57932725 None:intergenic 25.0%
!! GTGAATATTACATTTTGCAA+AGG + chr3_2:57932762-57932781 Msa0413450:intron 25.0%
! AAAGAATTACAAAAGCTAGA+TGG + chr3_2:57932881-57932900 Msa0413450:intron 25.0%
! ATCCAAAAAAAACATTAGAG+GGG - chr3_2:57933006-57933025 None:intergenic 25.0%
! GAATCCAAAAAAAACATTAG+AGG - chr3_2:57933008-57933027 None:intergenic 25.0%
! TACAAAATAGATGATATGAC+AGG + chr3_2:57933081-57933100 Msa0413450:intron 25.0%
! ACAAAATAGATGATATGACA+GGG + chr3_2:57933082-57933101 Msa0413450:intron 25.0%
!! TTTGAAATTCGATATCATGA+AGG + chr3_2:57933153-57933172 Msa0413450:intron 25.0%
! GAATCTTTAAATTACAAGGT+TGG + chr3_2:57933188-57933207 Msa0413450:intron 25.0%
!! AAACCAAAATTTGCTCAAAT+TGG + chr3_2:57933238-57933257 Msa0413450:intron 25.0%
!! AACCAAAATTTGCTCAAATT+GGG + chr3_2:57933239-57933258 Msa0413450:intron 25.0%
!!! TTTTAATTGCTTGTCAATTG+TGG + chr3_2:57933290-57933309 Msa0413450:intron 25.0%
! AATTGCAAACAAAAGTAAAG+AGG - chr3_2:57933326-57933345 None:intergenic 25.0%
! TAAGTTGTGAAATTTCAACA+GGG - chr3_2:57933439-57933458 None:intergenic 25.0%
! TTGAAATTTCACAACTTACT+CGG + chr3_2:57933441-57933460 Msa0413450:CDS 25.0%
! TTCATTGTACCTATTATTGT+TGG - chr3_2:57933894-57933913 None:intergenic 25.0%
!!! TTTTGATAATAACCACTAAG+TGG + chr3_2:57934064-57934083 Msa0413450:intron 25.0%
!! ACTAAGAAACTTTCTGAAAA+AGG - chr3_2:57934224-57934243 None:intergenic 25.0%
!!! TTTTTCAGAAAGTTTCTTAG+TGG + chr3_2:57934223-57934242 Msa0413450:intron 25.0%
!! TAATCTCTTTTTCTTAGATG+AGG + chr3_2:57934285-57934304 Msa0413450:intron 25.0%
!!! TTTTTTTTTCCTTCCAAGAT+TGG + chr3_2:57934417-57934436 Msa0413450:intron 25.0%
! AATTAACGAGGTAAAACAAA+TGG - chr3_2:57934539-57934558 None:intergenic 25.0%
! ATTTGAGAACAAAATTAACG+AGG - chr3_2:57934551-57934570 None:intergenic 25.0%
! GCTAAAAGAAGATATATTCA+AGG + chr3_2:57934605-57934624 Msa0413450:intron 25.0%
!! ATTAGAGTAAACAGTGATTT+TGG - chr3_2:57934695-57934714 None:intergenic 25.0%
! AAATTTGTATCACAGTGATA+GGG + chr3_2:57934883-57934902 Msa0413450:intron 25.0%
!! AGTTAATTTTGCAAGTATCT+GGG + chr3_2:57934932-57934951 Msa0413450:intron 25.0%
! GTTACTTCCTATATGATTAT+TGG + chr3_2:57935587-57935606 Msa0413450:three_prime_UTR 25.0%
!! GTCTAATATTTGCTGAATTA+TGG + chr3_2:57935640-57935659 Msa0413450:three_prime_UTR 25.0%
TGTTCAGAAAACGTTGAAAA+TGG + chr3_2:57930745-57930764 Msa0413450:CDS 30.0%
! TGAAATTGAAATGGGTATTG+TGG - chr3_2:57930837-57930856 None:intergenic 30.0%
GATTGAGGTGAAATTGAAAT+GGG - chr3_2:57930845-57930864 None:intergenic 30.0%
TGATTGAGGTGAAATTGAAA+TGG - chr3_2:57930846-57930865 None:intergenic 30.0%
!! AACCTTTGAAGATGAGTTTT+TGG - chr3_2:57930925-57930944 None:intergenic 30.0%
TCACACATCAATGAACAAAA+GGG - chr3_2:57930973-57930992 None:intergenic 30.0%
TTCACACATCAATGAACAAA+AGG - chr3_2:57930974-57930993 None:intergenic 30.0%
GTTGAATTGTTTAACAGGTA+AGG + chr3_2:57930999-57931018 Msa0413450:intron 30.0%
! TTGTTTAACAGGTAAGGTTT+TGG + chr3_2:57931005-57931024 Msa0413450:intron 30.0%
CTGCTTCAAATTTGAGAAAT+GGG + chr3_2:57931046-57931065 Msa0413450:CDS 30.0%
TCCATGTGTTGTATGATATT+CGG - chr3_2:57931234-57931253 None:intergenic 30.0%
TAAGTACTTGTAAGACTGTT+TGG - chr3_2:57931528-57931547 None:intergenic 30.0%
!! AAATAGGTCGTATGGTTTTA+TGG + chr3_2:57931578-57931597 Msa0413450:intron 30.0%
ATGGTTGAGGTAAATAATTG+GGG + chr3_2:57931597-57931616 Msa0413450:intron 30.0%
!! AATCTACAAGCTTCACTTTT+CGG - chr3_2:57931812-57931831 None:intergenic 30.0%
!! TTCATATGTTTTGTTCAGGA+TGG + chr3_2:57931831-57931850 Msa0413450:intron 30.0%
AGAAAATTCCGGTAAAAAAC+AGG + chr3_2:57931928-57931947 Msa0413450:CDS 30.0%
! GCTTAGATTTTTATGTCAAC+TGG + chr3_2:57932046-57932065 Msa0413450:intron 30.0%
! AACGCATTAGGTTTTACTTA+AGG + chr3_2:57932085-57932104 Msa0413450:intron 30.0%
! ACGCATTAGGTTTTACTTAA+GGG + chr3_2:57932086-57932105 Msa0413450:intron 30.0%
! TTCTATGCCATATATGCTTT+TGG + chr3_2:57932150-57932169 Msa0413450:intron 30.0%
! TTTACATGTTAGAGGTATGT+AGG + chr3_2:57932186-57932205 Msa0413450:intron 30.0%
TAATACAGGATGATTAGAGA+TGG + chr3_2:57932223-57932242 Msa0413450:intron 30.0%
AATACAGGATGATTAGAGAT+GGG + chr3_2:57932224-57932243 Msa0413450:intron 30.0%
AGTTATTCGAACGTTTAAAG+GGG + chr3_2:57932313-57932332 Msa0413450:intron 30.0%
! TTTAGAACTATGTCATGACA+TGG - chr3_2:57932452-57932471 None:intergenic 30.0%
!! CATGACATAGTTCTAAATTG+CGG + chr3_2:57932455-57932474 Msa0413450:intron 30.0%
CCTTCTAAACCTTTATATTG+CGG - chr3_2:57932500-57932519 None:intergenic 30.0%
AACACATGTCTAAAAGTGAA+TGG - chr3_2:57932594-57932613 None:intergenic 30.0%
!! TTCACTTTTAGACATGTGTT+AGG + chr3_2:57932594-57932613 Msa0413450:intron 30.0%
!! AAGGGATGATACTACTTTTA+AGG + chr3_2:57932933-57932952 Msa0413450:intron 30.0%
!! AGGGATGATACTACTTTTAA+GGG + chr3_2:57932934-57932953 Msa0413450:intron 30.0%
TAAACCAAAATTCGCTCAAA+TGG - chr3_2:57932982-57933001 None:intergenic 30.0%
TCCAAAAAAAACATTAGAGG+GGG - chr3_2:57933005-57933024 None:intergenic 30.0%
TGTACAGTCAAATTTCACAA+AGG - chr3_2:57933065-57933084 None:intergenic 30.0%
CAAAATAGATGATATGACAG+GGG + chr3_2:57933083-57933102 Msa0413450:intron 30.0%
AAAATAGATGATATGACAGG+GGG + chr3_2:57933084-57933103 Msa0413450:intron 30.0%
! ACCAAAATTTGCTCAAATTG+GGG + chr3_2:57933240-57933259 Msa0413450:intron 30.0%
GTAAGTTGTGAAATTTCAAC+AGG - chr3_2:57933440-57933459 None:intergenic 30.0%
! TAGACTTTTCTCATTCTTCA+TGG + chr3_2:57933476-57933495 Msa0413450:intron 30.0%
TGTTGGATGAATCAATTAAC+TGG + chr3_2:57933598-57933617 Msa0413450:CDS 30.0%
GTTGGATGAATCAATTAACT+GGG + chr3_2:57933599-57933618 Msa0413450:CDS 30.0%
TCTGAGAGTTAAACAAAAAC+AGG - chr3_2:57933723-57933742 None:intergenic 30.0%
TCTTGAAAGCCAACAATAAT+AGG + chr3_2:57933882-57933901 Msa0413450:CDS 30.0%
ATTAGCATTAGACATTGGAT+AGG - chr3_2:57933977-57933996 None:intergenic 30.0%
TATCCAATGTCTAATGCTAA+TGG + chr3_2:57933976-57933995 Msa0413450:intron 30.0%
ATCCAATGTCTAATGCTAAT+GGG + chr3_2:57933977-57933996 Msa0413450:intron 30.0%
!! TAATGCTAATGGGTTTACTT+AGG + chr3_2:57933987-57934006 Msa0413450:intron 30.0%
!!! TTTTTTTGTTTTTGTGGAGC+AGG + chr3_2:57934324-57934343 Msa0413450:intron 30.0%
!!! CAGTAGTTTTAGCAATTTGA+AGG + chr3_2:57934390-57934409 Msa0413450:CDS 30.0%
!!! TAGTTTTAGCAATTTGAAGG+TGG + chr3_2:57934393-57934412 Msa0413450:intron 30.0%
! ACCATTCTTCTGAAAGTAAA+CGG + chr3_2:57934446-57934465 Msa0413450:intron 30.0%
!!! TTTTGCATTTTTGGTACACT+CGG + chr3_2:57934635-57934654 Msa0413450:intron 30.0%
! AATTCACTTCTGAGAAATTG+AGG + chr3_2:57934855-57934874 Msa0413450:intron 30.0%
CAAATTTGTATCACAGTGAT+AGG + chr3_2:57934882-57934901 Msa0413450:intron 30.0%
! GAGTTAATTTTGCAAGTATC+TGG + chr3_2:57934931-57934950 Msa0413450:intron 30.0%
ATCACATGCTCAAAGTAAAA+TGG + chr3_2:57935018-57935037 Msa0413450:intron 30.0%
! GCAAGAAAAGTTAGCATTTT+TGG - chr3_2:57935056-57935075 None:intergenic 30.0%
! CTGCATAATTTTCACAAATG+TGG - chr3_2:57935087-57935106 None:intergenic 30.0%
CACATTTGTGAAAATTATGC+AGG + chr3_2:57935085-57935104 Msa0413450:intron 30.0%
CTTTGCATCTTAGTAACAAT+GGG + chr3_2:57935108-57935127 Msa0413450:CDS 30.0%
!!! CAAGTCTTGAATAGTTTTGA+TGG - chr3_2:57935146-57935165 None:intergenic 30.0%
AACTATTGATATTCTTCGTG+AGG + chr3_2:57935205-57935224 Msa0413450:CDS 30.0%
GGCTTATCATAGTTATTCAT+TGG + chr3_2:57935286-57935305 Msa0413450:intron 30.0%
! TTTTCTTTCAGTTTGAAGGA+TGG + chr3_2:57935333-57935352 Msa0413450:intron 30.0%
TTTCTTTCAGTTTGAAGGAT+GGG + chr3_2:57935334-57935353 Msa0413450:intron 30.0%
AAACAAATAGAATTCCGAGT+TGG + chr3_2:57935392-57935411 Msa0413450:CDS 30.0%
!! GTTTCTAGAGATTTTGATGA+AGG + chr3_2:57935416-57935435 Msa0413450:CDS 30.0%
TCACACATTGATCTTCTTCA+AGG + chr3_2:57930701-57930720 Msa0413450:CDS 35.0%
ACGTTGAAAATGGAAATCGA+TGG + chr3_2:57930755-57930774 Msa0413450:CDS 35.0%
TTGAAAATGGAAATCGATGG+CGG + chr3_2:57930758-57930777 Msa0413450:CDS 35.0%
! AGTTCTTTGATGGTTGATTG+AGG - chr3_2:57930860-57930879 None:intergenic 35.0%
AAGAGACTTGAGTTCTTTGA+TGG - chr3_2:57930870-57930889 None:intergenic 35.0%
GCTGCTTCAAATTTGAGAAA+TGG + chr3_2:57931045-57931064 Msa0413450:CDS 35.0%
! TGGGTCTAAAGTTATGCTTA+TGG + chr3_2:57931065-57931084 Msa0413450:CDS 35.0%
CTTCTCAGGGTTTATATCAA+GGG + chr3_2:57931088-57931107 Msa0413450:CDS 35.0%
TTCTCAGGGTTTATATCAAG+GGG + chr3_2:57931089-57931108 Msa0413450:CDS 35.0%
!! TGTTGTATGATATTCGGTGT+CGG - chr3_2:57931228-57931247 None:intergenic 35.0%
ACCGAATATCATACAACACA+TGG + chr3_2:57931230-57931249 Msa0413450:intron 35.0%
GTCATTCTAAATAGGTCGTA+TGG + chr3_2:57931570-57931589 Msa0413450:intron 35.0%
TGGTTGAGGTAAATAATTGG+GGG + chr3_2:57931598-57931617 Msa0413450:intron 35.0%
AATTCCGGTAAAAAACAGGT+TGG + chr3_2:57931932-57931951 Msa0413450:CDS 35.0%
TGGAGGTAAACAATTAGTCA+TGG + chr3_2:57932000-57932019 Msa0413450:intron 35.0%
! AAACGCTCCAAAAGCATATA+TGG - chr3_2:57932160-57932179 None:intergenic 35.0%
CATACCTCTAACATGTAAAC+CGG - chr3_2:57932185-57932204 None:intergenic 35.0%
!! TGATTAGAGATGGGCTATTT+AGG + chr3_2:57932233-57932252 Msa0413450:intron 35.0%
CAATTGCAACCGCAATATAA+AGG + chr3_2:57932488-57932507 Msa0413450:intron 35.0%
CCGCAATATAAAGGTTTAGA+AGG + chr3_2:57932497-57932516 Msa0413450:intron 35.0%
TGGAAAAATATGAGCAAAGG+TGG - chr3_2:57932549-57932568 None:intergenic 35.0%
!!! CTGTGCTCAACTTGTTTTAT+AGG + chr3_2:57932662-57932681 Msa0413450:intron 35.0%
TGTTCTTTCAGCTTTCTCAT+GGG - chr3_2:57932846-57932865 None:intergenic 35.0%
ATGTTCTTTCAGCTTTCTCA+TGG - chr3_2:57932847-57932866 None:intergenic 35.0%
AGAAAGCTGAAAGAACATGA+GGG + chr3_2:57932849-57932868 Msa0413450:intron 35.0%
AAAAGTAGTATCATCCCTTC+CGG - chr3_2:57932932-57932951 None:intergenic 35.0%
AAAATTCGCTCAAATGGCAA+GGG - chr3_2:57932976-57932995 None:intergenic 35.0%
!!! ACCCCCTCTAATGTTTTTTT+TGG + chr3_2:57933001-57933020 Msa0413450:intron 35.0%
! CCAAAATTTGCTCAAATTGG+GGG + chr3_2:57933241-57933260 Msa0413450:intron 35.0%
! CAAAATTTGCTCAAATTGGG+GGG + chr3_2:57933242-57933261 Msa0413450:intron 35.0%
! AAAATTTGCTCAAATTGGGG+GGG + chr3_2:57933243-57933262 Msa0413450:intron 35.0%
GGTTCAATGATAGTACTGTT+AGG - chr3_2:57933647-57933666 None:intergenic 35.0%
TACTATCATTGAACCAGAAC+CGG + chr3_2:57933652-57933671 Msa0413450:CDS 35.0%
CATATAACCATGTAACTCAC+CGG - chr3_2:57933674-57933693 None:intergenic 35.0%
GTCTCCAATAATCAATTAGC+TGG + chr3_2:57933821-57933840 Msa0413450:CDS 35.0%
AAGGCCAGCTAATTGATTAT+TGG - chr3_2:57933828-57933847 None:intergenic 35.0%
AACCCATTAGCATTAGACAT+TGG - chr3_2:57933982-57934001 None:intergenic 35.0%
ATCAAAAAATCCTCTGCATG+AGG - chr3_2:57934051-57934070 None:intergenic 35.0%
!! TCGATGTGTCTATTTTTCTC+AGG + chr3_2:57934117-57934136 Msa0413450:intron 35.0%
CTAAAACTACTGAATGTCTC+TGG - chr3_2:57934382-57934401 None:intergenic 35.0%
GAATGGTTTCAAACCAATCT+TGG - chr3_2:57934433-57934452 None:intergenic 35.0%
ACCGTTTACTTTCAGAAGAA+TGG - chr3_2:57934450-57934469 None:intergenic 35.0%
!!! TTTGCATTTTTGGTACACTC+GGG + chr3_2:57934636-57934655 Msa0413450:intron 35.0%
GAAACTTCCTCGCATATTTA+TGG + chr3_2:57934668-57934687 Msa0413450:intron 35.0%
! TTTTGGTCCATAAATATGCG+AGG - chr3_2:57934678-57934697 None:intergenic 35.0%
CTGAAGAGAAGTTGAGATAA+AGG - chr3_2:57934743-57934762 None:intergenic 35.0%
GAATTTGTATGAGCAAGCAA+GGG - chr3_2:57934840-57934859 None:intergenic 35.0%
TGAATTTGTATGAGCAAGCA+AGG - chr3_2:57934841-57934860 None:intergenic 35.0%
ACAGTGATAGGGAAAATCAA+AGG + chr3_2:57934894-57934913 Msa0413450:intron 35.0%
GCTTTGCATCTTAGTAACAA+TGG + chr3_2:57935107-57935126 Msa0413450:CDS 35.0%
!!! CTTGAATAGTTTTGATGGCA+GGG - chr3_2:57935141-57935160 None:intergenic 35.0%
!!! TCTTGAATAGTTTTGATGGC+AGG - chr3_2:57935142-57935161 None:intergenic 35.0%
TTCTGTATTATGGAGATCCA+AGG - chr3_2:57935183-57935202 None:intergenic 35.0%
GCATGACAGCAAAATATTTG+TGG + chr3_2:57935310-57935329 Msa0413450:intron 35.0%
! GTGGTTTTCTTTCAGTTTGA+AGG + chr3_2:57935329-57935348 Msa0413450:intron 35.0%
! AATCTCTAGAAACTCCAACT+CGG - chr3_2:57935409-57935428 None:intergenic 35.0%
GAACTTCACGCTTATGGTTA+TGG - chr3_2:57930807-57930826 None:intergenic 40.0%
GGCCAAAAACTCATCTTCAA+AGG + chr3_2:57930920-57930939 Msa0413450:CDS 40.0%
TTTGGAAGATTCTGTGACAG+TGG + chr3_2:57931023-57931042 Msa0413450:CDS 40.0%
AGTTATGCTTATGGCTTCTC+AGG + chr3_2:57931074-57931093 Msa0413450:CDS 40.0%
GTTATGCTTATGGCTTCTCA+GGG + chr3_2:57931075-57931094 Msa0413450:CDS 40.0%
GCTTCTCAGGGTTTATATCA+AGG + chr3_2:57931087-57931106 Msa0413450:CDS 40.0%
ATCATACAACACATGGACAC+CGG + chr3_2:57931237-57931256 Msa0413450:intron 40.0%
!!! GTCGTATGGTTTTATGGTTG+AGG + chr3_2:57931584-57931603 Msa0413450:intron 40.0%
GGTTGAGGTAAATAATTGGG+GGG + chr3_2:57931599-57931618 Msa0413450:intron 40.0%
TTTCACATGGGTAATGACCA+AGG + chr3_2:57931664-57931683 Msa0413450:intron 40.0%
CATCATTACTAGAGCTTGAG+TGG - chr3_2:57931905-57931924 None:intergenic 40.0%
!!! CGTTCCAACCTGTTTTTTAC+CGG - chr3_2:57931939-57931958 None:intergenic 40.0%
! CGGTAAAAAACAGGTTGGAA+CGG + chr3_2:57931937-57931956 Msa0413450:CDS 40.0%
! TAAAAAACAGGTTGGAACGG+TGG + chr3_2:57931940-57931959 Msa0413450:CDS 40.0%
AGCATTGTCTGAATGCAACT+TGG + chr3_2:57931980-57931999 Msa0413450:CDS 40.0%
ATTGTCTGAATGCAACTTGG+AGG + chr3_2:57931983-57932002 Msa0413450:CDS 40.0%
TTCTCCGGTTTACATGTTAG+AGG + chr3_2:57932178-57932197 Msa0413450:intron 40.0%
TATTCGAACGTTTAAAGGGG+TGG + chr3_2:57932316-57932335 Msa0413450:intron 40.0%
!! GGTTTAGAAGGTATCCGTAA+TGG + chr3_2:57932509-57932528 Msa0413450:intron 40.0%
GACATGTGTTAGGTTTCTTC+TGG + chr3_2:57932604-57932623 Msa0413450:intron 40.0%
! ACAGCAGATGAGGTACTTTA+CGG - chr3_2:57932646-57932665 None:intergenic 40.0%
! TTTGAAGTCTGCATAGAGCT+TGG + chr3_2:57932727-57932746 Msa0413450:intron 40.0%
CAAGTAACACTGCTTATGAC+AGG + chr3_2:57932792-57932811 Msa0413450:intron 40.0%
GAGAAAGCTGAAAGAACATG+AGG + chr3_2:57932848-57932867 Msa0413450:intron 40.0%
AAATTCGCTCAAATGGCAAG+GGG - chr3_2:57932975-57932994 None:intergenic 40.0%
CAAAATTCGCTCAAATGGCA+AGG - chr3_2:57932977-57932996 None:intergenic 40.0%
!! CTTGCCATTTGAGCGAATTT+TGG + chr3_2:57932975-57932994 Msa0413450:intron 40.0%
! CCCCCAATTTGAGCAAATTT+TGG - chr3_2:57933244-57933263 None:intergenic 40.0%
! AAATTTGCTCAAATTGGGGG+GGG + chr3_2:57933244-57933263 Msa0413450:intron 40.0%
TAAATAGGCCATACCTGATG+AGG + chr3_2:57933352-57933371 Msa0413450:intron 40.0%
AATCCAAACCTCATCAGGTA+TGG - chr3_2:57933363-57933382 None:intergenic 40.0%
GCAAGAGTTCTACATTGCAA+CGG + chr3_2:57933395-57933414 Msa0413450:CDS 40.0%
AACTCTCAGAAAGCGACAAA+CGG + chr3_2:57933733-57933752 Msa0413450:intron 40.0%
! TGTCATTCATCATTTTCCCC+AGG + chr3_2:57933951-57933970 Msa0413450:intron 40.0%
ATTAGACATTGGATAGGCCT+GGG - chr3_2:57933971-57933990 None:intergenic 40.0%
AATTTCATCTCCTCATGCAG+AGG + chr3_2:57934038-57934057 Msa0413450:intron 40.0%
! ACCACTAAGTGGTGTTCTTT+TGG + chr3_2:57934075-57934094 Msa0413450:intron 40.0%
ACCAAAAGAACACCACTTAG+TGG - chr3_2:57934079-57934098 None:intergenic 40.0%
GAAATGCCATTCTCTTGTTG+AGG + chr3_2:57934166-57934185 Msa0413450:CDS 40.0%
GGTTTCAAACCAATCTTGGA+AGG - chr3_2:57934429-57934448 None:intergenic 40.0%
!!! TTGCATTTTTGGTACACTCG+GGG + chr3_2:57934637-57934656 Msa0413450:intron 40.0%
TGTATTATGGAGATCCAAGG+TGG - chr3_2:57935180-57935199 None:intergenic 40.0%
AACATTCCTTAACATGCCTC+TGG + chr3_2:57935499-57935518 Msa0413450:three_prime_UTR 40.0%
ACCATAAGCGTGAAGTTCAG+TGG + chr3_2:57930809-57930828 Msa0413450:CDS 45.0%
ACCACTGAACTTCACGCTTA+TGG - chr3_2:57930813-57930832 None:intergenic 45.0%
TGCCACCAATGTTCTTCCAA+GGG + chr3_2:57930898-57930917 Msa0413450:CDS 45.0%
!!! AAGATGAGTTTTTGGCCCCT+TGG - chr3_2:57930917-57930936 None:intergenic 45.0%
AGTGCTTTACTACGTGTGCA+TGG + chr3_2:57931637-57931656 Msa0413450:intron 45.0%
TGTGCATGGATCGTTTCACA+TGG + chr3_2:57931651-57931670 Msa0413450:intron 45.0%
GTGCATGGATCGTTTCACAT+GGG + chr3_2:57931652-57931671 Msa0413450:intron 45.0%
! TGACCAAGGCTAGTTAGAAG+TGG + chr3_2:57931678-57931697 Msa0413450:intron 45.0%
! GTACCACTTCTAACTAGCCT+TGG - chr3_2:57931684-57931703 None:intergenic 45.0%
TGGCTATCTTTCCTCGTTGT+TGG - chr3_2:57931885-57931904 None:intergenic 45.0%
CAACTGGAAATTGGGAGATG+TGG + chr3_2:57932062-57932081 Msa0413450:intron 45.0%
!!! ATGCTTTTGGAGCGTTTCTC+CGG + chr3_2:57932163-57932182 Msa0413450:intron 45.0%
CAGCTTTCTCATGGGAATCA+AGG - chr3_2:57932838-57932857 None:intergenic 45.0%
AATTCGCTCAAATGGCAAGG+GGG - chr3_2:57932974-57932993 None:intergenic 45.0%
CCTGACATTTAGGCGAATTC+TGG - chr3_2:57933114-57933133 None:intergenic 45.0%
CCAGAATTCGCCTAAATGTC+AGG + chr3_2:57933111-57933130 Msa0413450:intron 45.0%
GAATTCGCCTAAATGTCAGG+AGG + chr3_2:57933114-57933133 Msa0413450:intron 45.0%
ACTTTCGCCTCCTGACATTT+AGG - chr3_2:57933124-57933143 None:intergenic 45.0%
!!! GAGCAAATTTTGGTTTCCCC+CGG - chr3_2:57933234-57933253 None:intergenic 45.0%
! AATTTGCTCAAATTGGGGGG+GGG + chr3_2:57933245-57933264 Msa0413450:intron 45.0%
CCACAAATCCAAACCTCATC+AGG - chr3_2:57933368-57933387 None:intergenic 45.0%
CCTGATGAGGTTTGGATTTG+TGG + chr3_2:57933365-57933384 Msa0413450:CDS 45.0%
AACAACTTTGCCATCTGCGT+TGG + chr3_2:57933769-57933788 Msa0413450:CDS 45.0%
ACAACTTTGCCATCTGCGTT+GGG + chr3_2:57933770-57933789 Msa0413450:CDS 45.0%
TGGGATCGATAACCTCTTTG+AGG + chr3_2:57933789-57933808 Msa0413450:CDS 45.0%
GGGATCGATAACCTCTTTGA+GGG + chr3_2:57933790-57933809 Msa0413450:CDS 45.0%
! CTGGCCTTCCTGATGAAATA+GGG + chr3_2:57933840-57933859 Msa0413450:CDS 45.0%
GATGCCCTATTTCATCAGGA+AGG - chr3_2:57933847-57933866 None:intergenic 45.0%
GTCAGATGCCCTATTTCATC+AGG - chr3_2:57933851-57933870 None:intergenic 45.0%
TTAGACATTGGATAGGCCTG+GGG - chr3_2:57933970-57933989 None:intergenic 45.0%
CATTAGACATTGGATAGGCC+TGG - chr3_2:57933972-57933991 None:intergenic 45.0%
GCCATTCTCTTGTTGAGGTA+CGG + chr3_2:57934171-57934190 Msa0413450:intron 45.0%
ACCGTACCTCAACAAGAGAA+TGG - chr3_2:57934175-57934194 None:intergenic 45.0%
GTGTCTTTGACCAGTCACTT+TGG + chr3_2:57934571-57934590 Msa0413450:intron 45.0%
ATTGCTTGCACCAAAGTGAC+TGG - chr3_2:57934584-57934603 None:intergenic 45.0%
! GTTTCTGATGCTTTGAGCGA+CGG - chr3_2:57935376-57935395 None:intergenic 45.0%
!!! TTTTTATATAAATTTTATAC+CGG + chr3_2:57932910-57932929 Msa0413450:intron 5.0%
! CTTGGAAGAACATTGGTGGC+AGG - chr3_2:57930899-57930918 None:intergenic 50.0%
CTGCCACCAATGTTCTTCCA+AGG + chr3_2:57930897-57930916 Msa0413450:CDS 50.0%
GCCACCAATGTTCTTCCAAG+GGG + chr3_2:57930899-57930918 Msa0413450:CDS 50.0%
TTGGCCCCTTGGAAGAACAT+TGG - chr3_2:57930906-57930925 None:intergenic 50.0%
TCCTGTCTTGAAGAGAGCTC+AGG + chr3_2:57931854-57931873 Msa0413450:CDS 50.0%
TTGGAACGGTGGAAAGCAAC+AGG + chr3_2:57931951-57931970 Msa0413450:CDS 50.0%
TGGGAGATGTGGAACGCATT+AGG + chr3_2:57932073-57932092 Msa0413450:intron 50.0%
CCGCGATTGGGATTCCATTA+CGG - chr3_2:57932526-57932545 None:intergenic 50.0%
! CCGTAATGGAATCCCAATCG+CGG + chr3_2:57932523-57932542 Msa0413450:intron 50.0%
! CAAGTTGAGCACAGCAGATG+AGG - chr3_2:57932656-57932675 None:intergenic 50.0%
GAAGTCTGCATAGAGCTTGG+AGG + chr3_2:57932730-57932749 Msa0413450:intron 50.0%
ATTCGCTCAAATGGCAAGGG+GGG - chr3_2:57932973-57932992 None:intergenic 50.0%
ATTTGCTCAAATTGGGGGGG+GGG + chr3_2:57933246-57933265 Msa0413450:intron 50.0%
AGGCCATACCTGATGAGGTT+TGG + chr3_2:57933357-57933376 Msa0413450:intron 50.0%
ACCAGAACCGGTGAGTTACA+TGG + chr3_2:57933664-57933683 Msa0413450:intron 50.0%
!! ACCATGTAACTCACCGGTTC+TGG - chr3_2:57933668-57933687 None:intergenic 50.0%
GTTATCGATCCCAACGCAGA+TGG - chr3_2:57933782-57933801 None:intergenic 50.0%
!! GCTGGCCTTCCTGATGAAAT+AGG + chr3_2:57933839-57933858 Msa0413450:CDS 50.0%
TTGCTTGCAGCTTTCCACCT+TGG + chr3_2:57935163-57935182 Msa0413450:CDS 50.0%
TCCTTAACATGCCTCTGGTG+TGG + chr3_2:57935504-57935523 Msa0413450:three_prime_UTR 50.0%
! ACCACACCAGAGGCATGTTA+AGG - chr3_2:57935508-57935527 None:intergenic 50.0%
TTAACATGCCTCTGGTGTGG+TGG + chr3_2:57935507-57935526 Msa0413450:three_prime_UTR 50.0%
GCCCCTTGGAAGAACATTGG+TGG - chr3_2:57930903-57930922 None:intergenic 55.0%
GCCTGAGCTCTCTTCAAGAC+AGG - chr3_2:57931858-57931877 None:intergenic 55.0%
CTCAGGCTGTTCCAACAACG+AGG + chr3_2:57931871-57931890 Msa0413450:CDS 55.0%
TTTGCTCAAATTGGGGGGGG+GGG + chr3_2:57933247-57933266 Msa0413450:intron 55.0%
GAGCAAAGGTGGCCGCGATT+GGG - chr3_2:57932538-57932557 None:intergenic 60.0%
TGAGCAAAGGTGGCCGCGAT+TGG - chr3_2:57932539-57932558 None:intergenic 60.0%
TTGCTCAAATTGGGGGGGGG+GGG + chr3_2:57933248-57933267 Msa0413450:intron 60.0%
GACGTGCAGCTCCCTCAAAG+AGG - chr3_2:57933804-57933823 None:intergenic 60.0%
CCAATCTGCCACCACACCAG+AGG - chr3_2:57935518-57935537 None:intergenic 60.0%
CCTCTGGTGTGGTGGCAGAT+TGG + chr3_2:57935515-57935534 Msa0413450:three_prime_UTR 60.0%
TGCTCAAATTGGGGGGGGGG+GGG + chr3_2:57933249-57933268 Msa0413450:intron 65.0%
GCTCAAATTGGGGGGGGGGG+GGG + chr3_2:57933250-57933269 Msa0413450:intron 70.0%
CTCAAATTGGGGGGGGGGGG+GGG + chr3_2:57933251-57933270 Msa0413450:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 57930689 57935675 57930689 ID=Msa0413450;Name=Msa0413450
chr3_2 mRNA 57930689 57935675 57930689 ID=Msa0413450-mRNA-1;Parent=Msa0413450;Name=Msa0413450-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0.88|0.8|1|1|1|10|221|407
chr3_2 exon 57930689 57930941 57930689 ID=Msa0413450-mRNA-1:exon:11948;Parent=Msa0413450-mRNA-1
chr3_2 exon 57931016 57931110 57931016 ID=Msa0413450-mRNA-1:exon:11949;Parent=Msa0413450-mRNA-1
chr3_2 exon 57931849 57932004 57931849 ID=Msa0413450-mRNA-1:exon:11950;Parent=Msa0413450-mRNA-1
chr3_2 exon 57933359 57933469 57933359 ID=Msa0413450-mRNA-1:exon:11951;Parent=Msa0413450-mRNA-1
chr3_2 exon 57933573 57933673 57933573 ID=Msa0413450-mRNA-1:exon:11952;Parent=Msa0413450-mRNA-1
chr3_2 exon 57933742 57933903 57933742 ID=Msa0413450-mRNA-1:exon:11953;Parent=Msa0413450-mRNA-1
chr3_2 exon 57934139 57934187 57934139 ID=Msa0413450-mRNA-1:exon:11954;Parent=Msa0413450-mRNA-1
chr3_2 exon 57934346 57934411 57934346 ID=Msa0413450-mRNA-1:exon:11955;Parent=Msa0413450-mRNA-1
chr3_2 exon 57935107 57935226 57935107 ID=Msa0413450-mRNA-1:exon:11956;Parent=Msa0413450-mRNA-1
chr3_2 exon 57935344 57935675 57935344 ID=Msa0413450-mRNA-1:exon:11957;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57930689 57930941 57930689 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57931016 57931110 57931016 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57931849 57932004 57931849 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57933359 57933469 57933359 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57933573 57933673 57933573 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57933742 57933903 57933742 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57934139 57934187 57934139 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57934346 57934411 57934346 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57935107 57935226 57935107 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 CDS 57935344 57935454 57935344 ID=Msa0413450-mRNA-1:cds;Parent=Msa0413450-mRNA-1
chr3_2 three_prime_UTR 57935455 57935675 57935455 ID=Msa0413450-mRNA-1:three_prime_utr;Parent=Msa0413450-mRNA-1
Gene Sequence

>Msa0413450

ATGAACACTCTATCACACATTGATCTTCTTCAAGGAAATCACATTGAGCTTCGTATTGTTCAGAAAACGTTGAAAATGGAAATCGATGGCGGAACAACGAATTCGAATTCTACTACCATAACCATAAGCGTGAAGTTCAGTGGTTCCACAATACCCATTTCAATTTCACCTCAATCAACCATCAAAGAACTCAAGTCTCTTCTTTTACCTGCCACCAATGTTCTTCCAAGGGGCCAAAAACTCATCTTCAAAGGTAAGGTTTTGGAAGATTCTGTGACAGTGGCTGCTTCAAATTTGAGAAATGGGTCTAAAGTTATGCTTATGGCTTCTCAGGGTTTATATCAAGGGGATGGTCCTGTCTTGAAGAGAGCTCAGGCTGTTCCAACAACGAGGAAAGATAGCCACTCAAGCTCTAGTAATGATGTGAAGAAAATTCCGGTAAAAAACAGGTTGGAACGGTGGAAAGCAACAGGAGTTGTAGCATTGTCTGAATGCAACTTGGAGGCCATACCTGATGAGGTTTGGATTTGTGGATCGTCTGCAAGAGTTCTACATTGCAACGGCAATTTACTTAAAAATGTCCCTGTTGAAATTTCACAACTTACTCGGCTAGATAAACTATTTATTAATTCTAATAACTTGTTGGATGAATCAATTAACTGGGAAGCACTGTCAAATATGAAGTACCTAACAGTACTATCATTGAACCAGAACCGAAAGCGACAAACGGTTTTCTGCAGTTTAACAACTTTGCCATCTGCGTTGGGATCGATAACCTCTTTGAGGGAGCTGCACGTCTCCAATAATCAATTAGCTGGCCTTCCTGATGAAATAGGGCATCTGACAAAGTTAGAAGTCTTGAAAGCCAACAATAATAGGATGAGTAAAATCAGTGAATTTATAGGGAAATGCCATTCTCTTGTTGAGGTTGATTTCTCATCAAATTTTCTATCAGAGTTGCCAGAGACATTCAGTAGTTTTAGCAATTTGAAGGCTTTGCATCTTAGTAACAATGGGATGAAATCCCTGCCATCAAAACTATTCAAGACTTGCTTGCAGCTTTCCACCTTGGATCTCCATAATACAGAAATAACTATTGATATTCTTCGTGAGTTTGAAGGATGGGACAGTTTTGATGAGCGCCGTCGCTCAAAGCATCAGAAACAAATAGAATTCCGAGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAA

Protein sequence

>Msa0413450

MNTLSHIDLLQGNHIELRIVQKTLKMEIDGGTTNSNSTTITISVKFSGSTIPISISPQSTIKELKSLLLPATNVLPRGQKLIFKGKVLEDSVTVAASNLRNGSKVMLMASQGLYQGDGPVLKRAQAVPTTRKDSHSSSSNDVKKIPVKNRLERWKATGVVALSECNLEAIPDEVWICGSSARVLHCNGNLLKNVPVEISQLTRLDKLFINSNNLLDESINWEALSNMKYLTVLSLNQNRKRQTVFCSLTTLPSALGSITSLRELHVSNNQLAGLPDEIGHLTKLEVLKANNNRMSKISEFIGKCHSLVEVDFSSNFLSELPETFSSFSNLKALHLSNNGMKSLPSKLFKTCLQLSTLDLHNTEITIDILREFEGWDSFDERRRSKHQKQIEFRVGVSRDFDEGADKN*