AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341450 MtrunA17_Chr7g0275661 98.655 595 8 0 1 595 1 595 0.0 1206
Msa1341450 MtrunA17_Chr8g0346901 70.352 597 163 5 1 590 1 590 0.0 844
Msa1341450 MtrunA17_Chr3g0126781 56.790 567 222 7 35 591 25 578 0.0 638
Msa1341450 MtrunA17_Chr8g0388301 57.517 572 218 9 37 590 27 591 0.0 636
Msa1341450 MtrunA17_Chr5g0396531 55.304 575 227 10 29 590 23 580 0.0 626
Msa1341450 MtrunA17_Chr8g0366091 39.189 296 150 6 266 547 146 425 9.08e-59 207
Msa1341450 MtrunA17_Chr5g0420771 40.000 300 146 7 266 547 148 431 2.93e-58 206
Msa1341450 MtrunA17_Chr7g0255481 38.158 304 160 6 258 547 76 365 4.09e-56 195
Msa1341450 MtrunA17_Chr7g0220391 40.214 281 135 8 284 547 162 426 1.99e-54 195
Msa1341450 MtrunA17_Chr7g0274921 32.075 159 101 5 36 193 2 154 1.12e-14 73.9
Msa1341450 MtrunA17_Chr7g0274921 31.646 158 101 5 37 193 79 230 4.00e-14 72.4
Msa1341450 MtrunA17_Chr6g0475961 32.051 156 99 5 37 191 4 153 1.77e-14 72.4
Msa1341450 MtrunA17_Chr1g0181441 31.646 158 101 5 37 193 1 152 3.73e-14 72.4
Msa1341450 MtrunA17_Chr1g0181441 31.646 158 101 5 37 193 77 228 3.73e-14 72.4
Msa1341450 MtrunA17_Chr4g0041751 31.013 158 102 5 37 193 1 152 5.17e-14 72.0
Msa1341450 MtrunA17_Chr4g0046801 31.447 159 102 5 36 193 3 155 2.06e-13 72.8
Msa1341450 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 80 231 3.01e-13 72.4
Msa1341450 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 156 307 3.01e-13 72.4
Msa1341450 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 232 383 3.01e-13 72.4
Msa1341450 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 308 459 3.01e-13 72.4
Msa1341450 MtrunA17_Chr4g0037241 33.333 135 84 4 37 170 1 130 2.12e-13 68.2
Msa1341450 MtrunA17_Chr5g0444101 33.333 135 84 4 37 170 1 130 2.12e-13 68.2
Msa1341450 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 9 160 2.41e-13 72.0
Msa1341450 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 85 236 2.41e-13 72.0
Msa1341450 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 161 312 2.41e-13 72.0
Msa1341450 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 237 388 2.41e-13 72.0
Msa1341450 MtrunA17_Chr4g0048591 31.447 159 102 5 36 193 3 155 2.67e-13 72.8
Msa1341450 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 232 383 3.33e-13 72.4
Msa1341450 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 80 231 3.89e-13 72.0
Msa1341450 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 156 307 3.89e-13 72.0
Msa1341450 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 384 535 3.89e-13 72.0
Msa1341450 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 5 156 2.87e-13 72.4
Msa1341450 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 81 232 2.87e-13 72.4
Msa1341450 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 157 308 2.87e-13 72.4
Msa1341450 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 233 384 2.87e-13 72.4
Msa1341450 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 309 460 2.87e-13 72.4
Msa1341450 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 1 152 3.87e-13 72.0
Msa1341450 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 77 228 3.87e-13 72.0
Msa1341450 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 153 304 3.87e-13 72.0
Msa1341450 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 229 380 3.87e-13 72.0
Msa1341450 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 305 456 3.87e-13 72.0
Msa1341450 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 381 532 3.87e-13 72.0
Msa1341450 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 4 155 4.18e-13 72.0
Msa1341450 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 80 231 4.18e-13 72.0
Msa1341450 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 156 307 4.18e-13 72.0
Msa1341450 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 232 383 4.18e-13 72.0
Msa1341450 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 308 459 4.18e-13 72.0
Msa1341450 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 384 535 4.18e-13 72.0
Msa1341450 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 80 231 4.85e-13 72.0
Msa1341450 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 156 307 4.85e-13 72.0
Msa1341450 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 368 519 4.85e-13 72.0
Msa1341450 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 444 595 4.85e-13 72.0
Msa1341450 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 4 155 5.63e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341450 AT2G46500.1 58.446 592 211 8 1 588 1 561 0.0 684
Msa1341450 AT2G46500.2 58.446 592 211 8 1 588 1 561 0.0 684
Msa1341450 AT5G24240.1 54.982 562 226 8 34 589 30 570 0.0 612
Msa1341450 AT5G24240.2 54.982 562 226 8 34 589 30 570 0.0 612
Msa1341450 AT2G46500.3 51.773 423 170 7 1 419 1 393 2.34e-142 419
Msa1341450 AT2G03890.1 38.739 333 168 9 254 566 139 455 1.88e-58 207
Msa1341450 AT1G13640.1 39.404 302 146 7 267 547 144 429 1.90e-56 201
Msa1341450 AT1G13640.2 39.404 302 146 7 267 547 144 429 1.90e-56 201
Msa1341450 AT3G56600.1 36.196 326 175 7 257 562 75 387 1.21e-55 197
Msa1341450 AT3G56600.3 36.196 326 175 7 257 562 75 387 1.21e-55 197
Msa1341450 AT3G56600.2 36.196 326 175 7 257 562 72 384 1.24e-55 197
Msa1341450 AT1G26270.1 38.333 300 152 8 265 547 146 429 5.68e-55 197
Msa1341450 AT2G40850.1 36.418 335 178 8 259 572 94 414 6.83e-55 196
Msa1341450 AT2G03890.2 41.304 230 104 6 334 547 99 313 3.29e-44 165
Msa1341450 AT1G27570.1 30.806 211 128 5 344 543 396 599 1.06e-21 100
Msa1341450 AT1G27570.2 30.806 211 128 5 344 543 387 590 1.40e-21 99.8
Msa1341450 AT4G05320.7 31.646 158 101 5 37 193 1 152 1.24e-14 72.0
Msa1341450 AT4G05050.4 31.646 158 101 5 37 193 1 152 1.24e-14 72.0
Msa1341450 AT2G35635.1 32.051 156 99 5 37 191 1 150 4.07e-14 70.5
Msa1341450 AT4G02890.2 31.646 158 101 5 37 193 1 152 5.60e-14 72.0
Msa1341450 AT4G02890.2 31.646 158 101 5 37 193 77 228 5.60e-14 72.0
Msa1341450 AT4G02890.1 31.646 158 101 5 37 193 1 152 5.60e-14 72.0
Msa1341450 AT4G02890.1 31.646 158 101 5 37 193 77 228 5.60e-14 72.0
Msa1341450 AT4G05050.2 31.646 158 101 5 37 193 1 152 5.60e-14 72.0
Msa1341450 AT4G05050.2 31.646 158 101 5 37 193 77 228 5.60e-14 72.0
Msa1341450 AT4G05050.1 31.646 158 101 5 37 193 1 152 5.60e-14 72.0
Msa1341450 AT4G05050.1 31.646 158 101 5 37 193 77 228 5.60e-14 72.0
Msa1341450 AT4G05050.3 31.646 158 101 5 37 193 1 152 5.60e-14 72.0
Msa1341450 AT4G05050.3 31.646 158 101 5 37 193 77 228 5.60e-14 72.0
Msa1341450 AT3G43950.1 34.815 135 79 4 347 478 78 206 6.62e-14 71.6
Msa1341450 AT1G31340.1 32.051 156 99 5 37 191 1 150 7.97e-14 69.7
Msa1341450 AT5G03240.3 31.646 158 101 5 37 193 1 152 1.55e-13 72.4
Msa1341450 AT5G03240.3 31.646 158 101 5 37 193 77 228 1.55e-13 72.4
Msa1341450 AT5G03240.3 31.646 158 101 5 37 193 153 304 1.55e-13 72.4
Msa1341450 AT5G03240.2 31.646 158 101 5 37 193 1 152 1.55e-13 72.4
Msa1341450 AT5G03240.2 31.646 158 101 5 37 193 77 228 1.55e-13 72.4
Msa1341450 AT5G03240.2 31.646 158 101 5 37 193 153 304 1.55e-13 72.4
Msa1341450 AT5G03240.1 31.646 158 101 5 37 193 1 152 1.55e-13 72.4
Msa1341450 AT5G03240.1 31.646 158 101 5 37 193 77 228 1.55e-13 72.4
Msa1341450 AT5G03240.1 31.646 158 101 5 37 193 153 304 1.55e-13 72.4
Msa1341450 AT5G20620.2 31.646 158 101 5 37 193 1 152 1.55e-13 72.4
Msa1341450 AT5G20620.2 31.646 158 101 5 37 193 77 228 1.55e-13 72.4
Msa1341450 AT5G20620.2 31.646 158 101 5 37 193 153 304 1.55e-13 72.4
Msa1341450 AT4G05320.5 31.646 158 101 5 37 193 1 152 1.67e-13 72.0
Msa1341450 AT4G05320.5 31.646 158 101 5 37 193 77 228 1.67e-13 72.0
Msa1341450 AT4G05320.5 31.646 158 101 5 37 193 153 304 1.67e-13 72.0
Msa1341450 AT4G05320.8 31.646 158 101 5 37 193 1 152 1.67e-13 72.0
Msa1341450 AT4G05320.8 31.646 158 101 5 37 193 77 228 1.67e-13 72.0
Msa1341450 AT4G05320.8 31.646 158 101 5 37 193 153 304 1.67e-13 72.0
Msa1341450 AT4G02890.3 31.646 158 101 5 37 193 1 152 1.67e-13 72.0
Msa1341450 AT4G02890.3 31.646 158 101 5 37 193 77 228 1.67e-13 72.0
Msa1341450 AT4G02890.3 31.646 158 101 5 37 193 153 304 1.67e-13 72.0
Msa1341450 AT4G02890.4 31.646 158 101 5 37 193 1 152 1.67e-13 72.0
Msa1341450 AT4G02890.4 31.646 158 101 5 37 193 77 228 1.67e-13 72.0
Msa1341450 AT4G02890.4 31.646 158 101 5 37 193 153 304 1.67e-13 72.0
Msa1341450 AT1G65350.1 32.278 158 99 5 37 193 1 151 2.02e-13 72.0
Msa1341450 AT1G65350.1 29.114 158 104 5 37 193 77 227 2.13e-11 65.9
Msa1341450 AT1G55060.1 29.651 172 104 5 33 193 63 228 2.28e-13 70.5
Msa1341450 AT5G20620.1 31.646 158 101 5 37 193 1 152 3.08e-13 72.0
Msa1341450 AT5G20620.1 31.646 158 101 5 37 193 77 228 3.08e-13 72.0
Msa1341450 AT5G20620.1 31.646 158 101 5 37 193 153 304 3.08e-13 72.0
Msa1341450 AT5G20620.1 31.646 158 101 5 37 193 229 380 3.08e-13 72.0
Msa1341450 AT4G05320.1 31.646 158 101 5 37 193 1 152 3.17e-13 72.0
Msa1341450 AT4G05320.1 31.646 158 101 5 37 193 77 228 3.17e-13 72.0
Msa1341450 AT4G05320.1 31.646 158 101 5 37 193 153 304 3.17e-13 72.0
Msa1341450 AT4G05320.1 31.646 158 101 5 37 193 229 380 3.17e-13 72.0
Msa1341450 AT4G05320.6 31.646 158 101 5 37 193 1 152 3.17e-13 72.0
Msa1341450 AT4G05320.6 31.646 158 101 5 37 193 77 228 3.17e-13 72.0
Msa1341450 AT4G05320.6 31.646 158 101 5 37 193 153 304 3.17e-13 72.0
Msa1341450 AT4G05320.6 31.646 158 101 5 37 193 229 380 3.17e-13 72.0
Msa1341450 AT4G05320.3 31.646 158 101 5 37 193 1 152 3.17e-13 72.0
Msa1341450 AT4G05320.3 31.646 158 101 5 37 193 77 228 3.17e-13 72.0
Msa1341450 AT4G05320.3 31.646 158 101 5 37 193 153 304 3.17e-13 72.0
Msa1341450 AT4G05320.3 31.646 158 101 5 37 193 229 380 3.17e-13 72.0
Msa1341450 AT4G05320.2 31.646 158 101 5 37 193 1 152 4.23e-13 72.0
Msa1341450 AT4G05320.2 31.646 158 101 5 37 193 77 228 4.23e-13 72.0
Msa1341450 AT4G05320.2 31.646 158 101 5 37 193 153 304 4.23e-13 72.0
Msa1341450 AT4G05320.2 31.646 158 101 5 37 193 229 380 4.23e-13 72.0
Msa1341450 AT4G05320.2 31.646 158 101 5 37 193 305 456 4.23e-13 72.0
Msa1341450 AT4G05320.4 31.646 158 101 5 37 193 1 152 4.23e-13 72.0
Msa1341450 AT4G05320.4 31.646 158 101 5 37 193 77 228 4.23e-13 72.0
Msa1341450 AT4G05320.4 31.646 158 101 5 37 193 153 304 4.23e-13 72.0
Msa1341450 AT4G05320.4 31.646 158 101 5 37 193 229 380 4.23e-13 72.0
Msa1341450 AT4G05320.4 31.646 158 101 5 37 193 305 456 4.23e-13 72.0
Msa1341450 AT5G37640.1 29.518 166 105 5 52 211 19 178 1.29e-11 66.6

Find 150 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCAGCTTGTTGAATTT+AGG 0.133656 tig0004829:-9926 Msa1341450:five_prime_UTR
AACTTGCGACGTCCACTTAT+TGG 0.166902 tig0004829:+8500 None:intergenic
GAGGTAAAATTGGTCTCTTT+TGG 0.196561 tig0004829:-9879 Msa1341450:five_prime_UTR
CATACTCCTACCTAGCTTAA+AGG 0.229628 tig0004829:+9789 None:intergenic
AGCTTCAGTGATTCGAAATA+TGG 0.237481 tig0004829:-8777 Msa1341450:CDS
TTTGATCTTTGAGGTAAAAT+TGG 0.241624 tig0004829:-9889 Msa1341450:five_prime_UTR
TCTCTATCGGGAAGCTTTCT+TGG 0.255627 tig0004829:+8842 None:intergenic
GGAAGTTGCTGCTTATGTTT+TGG 0.257385 tig0004829:-8528 Msa1341450:CDS
AGTGGACGTCGCAAGTTATT+TGG 0.265630 tig0004829:-8494 Msa1341450:CDS
CAAGCGAAGGATTGCTAAAA+AGG 0.268222 tig0004829:-9146 Msa1341450:CDS
TGCATCTGTTTGTTCGAAAA+AGG 0.284524 tig0004829:-9015 Msa1341450:CDS
TTATCAGCTTGTTGAATTTA+GGG 0.288456 tig0004829:-9925 Msa1341450:five_prime_UTR
TTCAATATTTCTCTCGTTCT+CGG 0.303158 tig0004829:-9455 Msa1341450:CDS
CCGTATTCTGCTGAAACTAT+TGG 0.313231 tig0004829:-7716 Msa1341450:CDS
AGTGTAAACAAAGGTTATTT+TGG 0.322758 tig0004829:-9626 Msa1341450:five_prime_UTR
CAGAATACGGCTGGCGAGCT+TGG 0.326056 tig0004829:+7729 None:intergenic
GATACTCTACTTAAGGATTA+TGG 0.332495 tig0004829:-9295 Msa1341450:CDS
CCTTCACCGTCTAATGATAA+TGG 0.336135 tig0004829:+8590 None:intergenic
AGAATACGGCTGGCGAGCTT+GGG 0.336231 tig0004829:+7730 None:intergenic
GCATTTGAGTCTGTTCTTCC+TGG 0.336546 tig0004829:-7482 Msa1341450:CDS
AAGACAAGTGAGATGGTAAA+TGG 0.339437 tig0004829:+9494 None:intergenic
AGCAGGAACTTGTGTGTAAT+GGG 0.346405 tig0004829:-9099 Msa1341450:CDS
AGCTGTGAAGATATCGGTCC+TGG 0.357604 tig0004829:-8344 Msa1341450:CDS
ATCAATGTCAAAACATCTTC+GGG 0.363524 tig0004829:-9217 Msa1341450:CDS
TACTTTATGCTTGATTCAAC+TGG 0.367790 tig0004829:-8683 Msa1341450:CDS
GGACAATGACCAGTCTGTTC+TGG 0.368416 tig0004829:-8222 Msa1341450:CDS
TTGATATCTGCAATAGTAAC+AGG 0.371471 tig0004829:-7371 Msa1341450:three_prime_UTR
TAACCATCCAGGAGACTTGA+TGG 0.377723 tig0004829:-8408 Msa1341450:CDS
ATGGAAGACTCTCACACCTT+TGG 0.377727 tig0004829:+9371 None:intergenic
CGTATTCTGCTGAAACTATT+GGG 0.383361 tig0004829:-7715 Msa1341450:CDS
GTACCTTCTGCAGATCCTAT+TGG 0.386108 tig0004829:+8716 None:intergenic
GGTTGAGCTGTTTGTTATGA+TGG 0.387025 tig0004829:-9706 Msa1341450:five_prime_UTR
CATCAATGTCAAAACATCTT+CGG 0.391195 tig0004829:-9218 Msa1341450:CDS
ATAATAATATTTCTACAATT+AGG 0.397748 tig0004829:+9733 None:intergenic
ATCAAGTTTCCAATTGCAAA+AGG 0.400969 tig0004829:+7557 None:intergenic
GTTATTGAATTGAAATTTGT+AGG 0.401634 tig0004829:+10010 None:intergenic
AATTAAATGCTTACACTTGT+GGG 0.404724 tig0004829:+8173 None:intergenic
TAGTTGGTCAAGGAGCGTTC+AGG 0.416347 tig0004829:-8550 Msa1341450:CDS
GATGGTAAATGGAATGCATT+TGG 0.428711 tig0004829:+9505 None:intergenic
TTTAACTAACAAACAGAAGT+TGG 0.431926 tig0004829:-9347 Msa1341450:CDS
TGGTGTTCCTCCAACATTGA+TGG 0.433858 tig0004829:-8453 Msa1341450:CDS
TCTTGGCACCGCTCTCTGAA+TGG 0.434707 tig0004829:+8859 None:intergenic
TCAATATTTCTCTCGTTCTC+GGG 0.438311 tig0004829:-9454 Msa1341450:CDS
TCGAAGTGATACTCTACTTA+AGG 0.438824 tig0004829:-9302 Msa1341450:CDS
GATGGTCAAGTGCTTGCATA+AGG 0.443223 tig0004829:-8435 Msa1341450:CDS
AGCTTCCACCTTTCGATCTA+CGG 0.445912 tig0004829:-9955 Msa1341450:five_prime_UTR
AATGGCTTGTCTATTATCCT+TGG 0.450569 tig0004829:+7146 None:intergenic
CAATTGGAAACTTGATGTGC+AGG 0.450882 tig0004829:-7550 Msa1341450:CDS
AGAGTTCGAGCACATTCAAT+TGG 0.454661 tig0004829:+7629 None:intergenic
GAACGAGAGAAATATTGAAA+TGG 0.459276 tig0004829:+9459 None:intergenic
GTTCTGGTTCCAATTGATCA+TGG 0.461509 tig0004829:-8206 Msa1341450:CDS
ATCTTAGCCATCAAGTCTCC+TGG 0.464083 tig0004829:+8401 None:intergenic
CTCCAAAAGAAAATCTCTAT+CGG 0.467054 tig0004829:+8829 None:intergenic
TTCTCGTGGAAGAAAATTTG+AGG 0.470292 tig0004829:-8906 Msa1341450:CDS
GTTTGATGATCTTGAGGAGC+AGG 0.472677 tig0004829:-9116 Msa1341450:CDS
GCTAGCGAATACTATCCAAT+AGG 0.473031 tig0004829:-8731 Msa1341450:CDS
TAATGATAATGGAAGACCTC+GGG 0.474414 tig0004829:+8601 None:intergenic
TTGAAGAAAGGGGTTGAGAG+AGG 0.478531 tig0004829:-7587 Msa1341450:CDS
CCAATAGTTTCAGCAGAATA+CGG 0.480969 tig0004829:+7716 None:intergenic
TTGAGCAATTAGTGCAAAAG+AGG 0.481203 tig0004829:+9980 None:intergenic
TCCCATTCCATAACACGAAA+AGG 0.482974 tig0004829:+9421 None:intergenic
AAATTAAATGCTTACACTTG+TGG 0.484991 tig0004829:+8172 None:intergenic
CATAAGGGATTTAACCATCC+AGG 0.485124 tig0004829:-8419 Msa1341450:CDS
AAGCAGTATCCATGATCAAT+TGG 0.485316 tig0004829:+8197 None:intergenic
AGTTGGTCAAGGAGCGTTCA+GGG 0.486553 tig0004829:-8549 Msa1341450:CDS
GAACAAGGAATCTGTGATAG+AGG 0.486875 tig0004829:-7519 Msa1341450:CDS
TTAGTGCAAAAGAGGGTAAC+GGG 0.487025 tig0004829:+9988 None:intergenic
TCAAGTTTCCAATTGCAAAA+GGG 0.487387 tig0004829:+7558 None:intergenic
AACCCCTTTCTTCAAAAGCA+TGG 0.489309 tig0004829:+7595 None:intergenic
TTTATTAAATTTGAATTCCA+AGG 0.494497 tig0004829:-7163 Msa1341450:three_prime_UTR
AATGGCTCAGTGGGATCCAC+TGG 0.494737 tig0004829:+9535 None:intergenic
GGAGACTTGATGGCTAAGAT+TGG 0.495959 tig0004829:-8398 Msa1341450:CDS
ATAGGATCTGCAGAAGGTAC+CGG 0.497760 tig0004829:-8713 Msa1341450:CDS
TGTAGAAATATTATTATGCA+TGG 0.497787 tig0004829:-9727 Msa1341450:five_prime_UTR
AACTAAGTTATAACAAAGAA+TGG 0.498502 tig0004829:+7254 None:intergenic
TATCACTTCGAGCGAGTTCA+CGG 0.499648 tig0004829:+9314 None:intergenic
AGATGCTGTTTCTCAAATCA+TGG 0.499783 tig0004829:-7438 Msa1341450:CDS
CGTGGAAGAAAATTTGAGGT+TGG 0.502124 tig0004829:-8902 Msa1341450:CDS
GCAAATGCAGATAGGCATGC+TGG 0.503643 tig0004829:-8269 Msa1341450:CDS
AAACAGAAGTTGGTTTATGC+TGG 0.505699 tig0004829:-9337 Msa1341450:CDS
AGTACACAAAATTAGTGTAC+TGG 0.506035 tig0004829:-8303 Msa1341450:CDS
CAAGTTATTTGGTGATGTGA+AGG 0.508171 tig0004829:-8483 Msa1341450:CDS
TCCAAAAGAAAATCTCTATC+GGG 0.509865 tig0004829:+8830 None:intergenic
GCCATTGGCTCTTCGTCGAT+AGG 0.511038 tig0004829:+8635 None:intergenic
TAGTGTACTGGACATAAGAT+TGG 0.513283 tig0004829:-8291 Msa1341450:CDS
GAGAGTTGAAAATCTTATCA+AGG 0.515143 tig0004829:+7408 None:intergenic
TAAGATTGGCAAATGCAGAT+AGG 0.515290 tig0004829:-8277 Msa1341450:CDS
CAAGTTTCCAATTGCAAAAG+GGG 0.516578 tig0004829:+7559 None:intergenic
CCATTATCATTAGACGGTGA+AGG 0.523513 tig0004829:-8590 Msa1341450:CDS
TAGGATCTGCAGAAGGTACC+GGG 0.527750 tig0004829:-8712 Msa1341450:CDS
GTGTAATGGGGAACGGTTGG+AGG 0.532109 tig0004829:-9086 Msa1341450:CDS
AAGTTATTTGGTGATGTGAA+GGG 0.535843 tig0004829:-8482 Msa1341450:CDS
CACCGCTCTCTGAATGGCAT+CGG 0.538669 tig0004829:+8865 None:intergenic
GCTGTGAAGATATCGGTCCT+GGG 0.539152 tig0004829:-8343 Msa1341450:CDS
GAAACAGTTTGATGATCTTG+AGG 0.541679 tig0004829:-9122 Msa1341450:CDS
TCATTTACCGGGAAAGCCCC+AGG 0.542503 tig0004829:+8326 None:intergenic
GAGCAGGAACTTGTGTGTAA+TGG 0.543660 tig0004829:-9100 Msa1341450:CDS
AATGTAGCTTCACTTGTGCC+AGG 0.546538 tig0004829:+7464 None:intergenic
TATTGGGTACATAAAGTCAC+TGG 0.549010 tig0004829:-7699 Msa1341450:CDS
TAGTTTCAGCAGAATACGGC+TGG 0.549860 tig0004829:+7720 None:intergenic
GGAGACAACAATGGCTCAGT+GGG 0.550782 tig0004829:+9526 None:intergenic
TGAAAATCTTATCAAGGCGC+TGG 0.555048 tig0004829:+7414 None:intergenic
ATGGTCAAGTGCTTGCATAA+GGG 0.559797 tig0004829:-8434 Msa1341450:CDS
AATGGGAGCTGTGAAGATAT+CGG 0.559895 tig0004829:-8350 Msa1341450:CDS
GGAAGAAAATTTGAGGTTGG+TGG 0.560621 tig0004829:-8899 Msa1341450:CDS
GCCTATCGACGAAGAGCCAA+TGG 0.563365 tig0004829:-8636 Msa1341450:CDS
GTTACAATGGACAACTCAAA+GGG 0.565579 tig0004829:+8971 None:intergenic
AAGGATTATGGAGTAACTGA+TGG 0.571025 tig0004829:-9283 Msa1341450:CDS
AGTTACAATGGACAACTCAA+AGG 0.571959 tig0004829:+8970 None:intergenic
CAAATGCAGATAGGCATGCT+GGG 0.572744 tig0004829:-8268 Msa1341450:CDS
CACTTGACCATCAATGTTGG+AGG 0.573274 tig0004829:+8446 None:intergenic
GAATACGGCTGGCGAGCTTG+GGG 0.573463 tig0004829:+7731 None:intergenic
TGTGTGTAATGGGGAACGGT+TGG 0.578859 tig0004829:-9089 Msa1341450:CDS
AAGCATAAAGTAAGCTCCCC+CGG 0.581274 tig0004829:+8694 None:intergenic
ATTAGTGCAAAAGAGGGTAA+CGG 0.581518 tig0004829:+9987 None:intergenic
GTCCATTGTAACTACAGACT+TGG 0.582693 tig0004829:-8960 Msa1341450:CDS
TGTTAGTACTCTTAGTCCAG+TGG 0.584156 tig0004829:-9551 Msa1341450:CDS
TGAGCAATTAGTGCAAAAGA+GGG 0.585294 tig0004829:+9981 None:intergenic
TTGATTCTCAGTGTAAACAA+AGG 0.588245 tig0004829:-9635 Msa1341450:five_prime_UTR
GGTCTTCCATTATCATTAGA+CGG 0.588994 tig0004829:-8596 Msa1341450:CDS
TCCTCAAAAGACAAGTGAGA+TGG 0.590743 tig0004829:+9487 None:intergenic
ATATGTATAGCTCAAAACAT+TGG 0.592974 tig0004829:-7328 Msa1341450:three_prime_UTR
AGCCAAGTCTGTAGTTACAA+TGG 0.593929 tig0004829:+8958 None:intergenic
AAGGGTACAATAGTTGGTCA+AGG 0.598430 tig0004829:-8560 Msa1341450:CDS
TTAGTGAAAATGTCATCTGC+TGG 0.606185 tig0004829:-9574 Msa1341450:exon
ATGTAAAATACATCAAGCGA+AGG 0.618575 tig0004829:-9159 Msa1341450:CDS
AAACGACACCGTAGATCGAA+AGG 0.619213 tig0004829:+9947 None:intergenic
ATGGTAAACTCTGCATACGA+TGG 0.619677 tig0004829:-8758 Msa1341450:CDS
AAGCACTTGACCATCAATGT+TGG 0.627426 tig0004829:+8443 None:intergenic
TACCGATGCCATTCAGAGAG+CGG 0.639607 tig0004829:-8867 Msa1341450:CDS
CTGTGAAGATATCGGTCCTG+GGG 0.640174 tig0004829:-8342 Msa1341450:CDS
TAGCCATCAAGTCTCCTGGA+TGG 0.640520 tig0004829:+8405 None:intergenic
CTGCAAGCATAATGATGCAG+TGG 0.641116 tig0004829:-9038 Msa1341450:CDS
CTAATGATAATGGAAGACCT+CGG 0.646268 tig0004829:+8600 None:intergenic
AACTTGTGTGTAATGGGGAA+CGG 0.646813 tig0004829:-9093 Msa1341450:CDS
TGGAGACAACAATGGCTCAG+TGG 0.649706 tig0004829:+9525 None:intergenic
AATTGGAAACTTGATGTGCA+GGG 0.653610 tig0004829:-7549 Msa1341450:CDS
GTGCAGGGAATCATTGAACA+AGG 0.654835 tig0004829:-7534 Msa1341450:CDS
CTGTTAAGTTCAAAATCCAA+AGG 0.656079 tig0004829:-9387 Msa1341450:CDS
AATGCATTTGGAGACAACAA+TGG 0.660019 tig0004829:+9517 None:intergenic
AATGATAATGGAAGACCTCG+GGG 0.661241 tig0004829:+8602 None:intergenic
CAATTGGAACCAGAACAGAC+TGG 0.671066 tig0004829:+8213 None:intergenic
AAACTCAATGATGATGACGA+TGG 0.676648 tig0004829:+10038 None:intergenic
AGGATCTGCAGAAGGTACCG+GGG 0.678821 tig0004829:-8711 Msa1341450:CDS
GCAGGAACTTGTGTGTAATG+GGG 0.680555 tig0004829:-9098 Msa1341450:CDS
TATCCAATAGGATCTGCAGA+AGG 0.683129 tig0004829:-8719 Msa1341450:CDS
CGACACCGTAGATCGAAAGG+TGG 0.695095 tig0004829:+9950 None:intergenic
TCAATGTCAAAACATCTTCG+GGG 0.701785 tig0004829:-9216 Msa1341450:CDS
GGATCTGCAGAAGGTACCGG+GGG 0.709644 tig0004829:-8710 Msa1341450:CDS
ATGATAATGGAAGACCTCGG+GGG 0.745031 tig0004829:+8603 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATATTTCTACAATT+AGG + tig0004829:7477-7496 None:intergenic 10.0%
!! TTATGACTTAAAAAATGAAT+TGG - tig0004829:9291-9310 Msa1341450:CDS 15.0%
!! TTTATTAAATTTGAATTCCA+AGG - tig0004829:10044-10063 Msa1341450:five_prime_UTR 15.0%
!! GTTATTGAATTGAAATTTGT+AGG + tig0004829:7200-7219 None:intergenic 20.0%
!!! ATTTTCTAATTTGATCTTTG+AGG - tig0004829:7309-7328 Msa1341450:three_prime_UTR 20.0%
!! AAAAACTAATACGAACAAAA+AGG + tig0004829:7391-7410 None:intergenic 20.0%
!! TGTAGAAATATTATTATGCA+TGG - tig0004829:7480-7499 Msa1341450:CDS 20.0%
!!! TTCTGTTTGTTAGTTAAAAA+TGG + tig0004829:7858-7877 None:intergenic 20.0%
!!! ATTTTAGGGTTAACTATAAT+TGG + tig0004829:8404-8423 None:intergenic 20.0%
!!! AACATAATGTTTTCAAATAG+TGG - tig0004829:9117-9136 Msa1341450:CDS 20.0%
!! AACTAAGTTATAACAAAGAA+TGG + tig0004829:9956-9975 None:intergenic 20.0%
!!! TTTATCAGCTTGTTGAATTT+AGG - tig0004829:7281-7300 Msa1341450:three_prime_UTR 25.0%
!!! TTATCAGCTTGTTGAATTTA+GGG - tig0004829:7282-7301 Msa1341450:three_prime_UTR 25.0%
!!! TTTGATCTTTGAGGTAAAAT+TGG - tig0004829:7318-7337 Msa1341450:three_prime_UTR 25.0%
!! AAAAAGGAAAGATCTTTTGA+AGG + tig0004829:7375-7394 None:intergenic 25.0%
! TTTGAAAAAACCTTTAAGCT+AGG - tig0004829:7408-7427 Msa1341450:CDS 25.0%
!!! ATTTGTAGACTTTAGTTTTG+AGG - tig0004829:7536-7555 Msa1341450:CDS 25.0%
!!! TTTGTAGACTTTAGTTTTGA+GGG - tig0004829:7537-7556 Msa1341450:CDS 25.0%
!! AGTGTAAACAAAGGTTATTT+TGG - tig0004829:7581-7600 Msa1341450:CDS 25.0%
! TTTAACTAACAAACAGAAGT+TGG - tig0004829:7860-7879 Msa1341450:intron 25.0%
!! TTAAAAAAGGGTACAATAGT+TGG - tig0004829:8641-8660 Msa1341450:CDS 25.0%
! AGATGTTTGTGAAAAACAAT+GGG - tig0004829:8840-8859 Msa1341450:CDS 25.0%
!! ATTTTGTGTACTTCATTTAC+CGG + tig0004829:8896-8915 None:intergenic 25.0%
! AATTAAATGCTTACACTTGT+GGG + tig0004829:9037-9056 None:intergenic 25.0%
! AAATTAAATGCTTACACTTG+TGG + tig0004829:9038-9057 None:intergenic 25.0%
!! TTTTCAAATAGTGGTTATAG+CGG - tig0004829:9126-9145 Msa1341450:CDS 25.0%
! TTTGTGCAATCTACAATATA+TGG - tig0004829:9255-9274 Msa1341450:CDS 25.0%
! ACTTAAAAAATGAATTGGCT+AGG - tig0004829:9296-9315 Msa1341450:CDS 25.0%
! TGTATTGAAATAATGAAGTC+TGG - tig0004829:9337-9356 Msa1341450:CDS 25.0%
!! TTGAAGATTGTACTTTTGAA+TGG - tig0004829:9444-9463 Msa1341450:CDS 25.0%
! ATATGTATAGCTCAAAACAT+TGG - tig0004829:9879-9898 Msa1341450:five_prime_UTR 25.0%
!!! GGATTTTTAGTTCATAACAA+CGG - tig0004829:9900-9919 Msa1341450:five_prime_UTR 25.0%
!! AGGTAAAATTGGTCTCTTTT+GGG - tig0004829:7329-7348 Msa1341450:three_prime_UTR 30.0%
AAAAAACCTTTAAGCTAGGT+AGG - tig0004829:7412-7431 Msa1341450:CDS 30.0%
!!! TTGTAGACTTTAGTTTTGAG+GGG - tig0004829:7538-7557 Msa1341450:CDS 30.0%
TTGATTCTCAGTGTAAACAA+AGG - tig0004829:7572-7591 Msa1341450:CDS 30.0%
GAACGAGAGAAATATTGAAA+TGG + tig0004829:7751-7770 None:intergenic 30.0%
TTCAATATTTCTCTCGTTCT+CGG - tig0004829:7752-7771 Msa1341450:CDS 30.0%
CTGTTAAGTTCAAAATCCAA+AGG - tig0004829:7820-7839 Msa1341450:intron 30.0%
GATACTCTACTTAAGGATTA+TGG - tig0004829:7912-7931 Msa1341450:intron 30.0%
CATCAATGTCAAAACATCTT+CGG - tig0004829:7989-8008 Msa1341450:intron 30.0%
ATCAATGTCAAAACATCTTC+GGG - tig0004829:7990-8009 Msa1341450:intron 30.0%
ATGTAAAATACATCAAGCGA+AGG - tig0004829:8048-8067 Msa1341450:intron 30.0%
!! GATGTTTTTGAAAATTCTCG+TGG - tig0004829:8287-8306 Msa1341450:CDS 30.0%
TCCAAAAGAAAATCTCTATC+GGG + tig0004829:8380-8399 None:intergenic 30.0%
CTCCAAAAGAAAATCTCTAT+CGG + tig0004829:8381-8400 None:intergenic 30.0%
! CTGAAGCTAACTCAATTTTA+GGG + tig0004829:8418-8437 None:intergenic 30.0%
! ACTGAAGCTAACTCAATTTT+AGG + tig0004829:8419-8438 None:intergenic 30.0%
TACTTTATGCTTGATTCAAC+TGG - tig0004829:8524-8543 Msa1341450:CDS 30.0%
!! AAGTTATTTGGTGATGTGAA+GGG - tig0004829:8725-8744 Msa1341450:CDS 30.0%
CAGATGTTTGTGAAAAACAA+TGG - tig0004829:8839-8858 Msa1341450:CDS 30.0%
! TTTTGTGTACTTCATTTACC+GGG + tig0004829:8895-8914 None:intergenic 30.0%
AGTACACAAAATTAGTGTAC+TGG - tig0004829:8904-8923 Msa1341450:CDS 30.0%
TTGAAATAATGAAGTCTGGT+TGG - tig0004829:9341-9360 Msa1341450:CDS 30.0%
!!! ATTGCACTTTTGAAGTTTCA+TGG - tig0004829:9545-9564 Msa1341450:CDS 30.0%
!!! ACTTTTGAAGTTTCATGGAT+GGG - tig0004829:9550-9569 Msa1341450:CDS 30.0%
TCAAGTTTCCAATTGCAAAA+GGG + tig0004829:9652-9671 None:intergenic 30.0%
ATCAAGTTTCCAATTGCAAA+AGG + tig0004829:9653-9672 None:intergenic 30.0%
GAGAGTTGAAAATCTTATCA+AGG + tig0004829:9802-9821 None:intergenic 30.0%
TTGATATCTGCAATAGTAAC+AGG - tig0004829:9836-9855 Msa1341450:five_prime_UTR 30.0%
!!! TTTTTAGTTCATAACAACGG+AGG - tig0004829:9903-9922 Msa1341450:five_prime_UTR 30.0%
! AAACTCAATGATGATGACGA+TGG + tig0004829:7172-7191 None:intergenic 35.0%
ATTAGTGCAAAAGAGGGTAA+CGG + tig0004829:7223-7242 None:intergenic 35.0%
TGAGCAATTAGTGCAAAAGA+GGG + tig0004829:7229-7248 None:intergenic 35.0%
TTGAGCAATTAGTGCAAAAG+AGG + tig0004829:7230-7249 None:intergenic 35.0%
!! GAGGTAAAATTGGTCTCTTT+TGG - tig0004829:7328-7347 Msa1341450:three_prime_UTR 35.0%
!! GGTAAAATTGGTCTCTTTTG+GGG - tig0004829:7330-7349 Msa1341450:three_prime_UTR 35.0%
TTAGTGAAAATGTCATCTGC+TGG - tig0004829:7633-7652 Msa1341450:CDS 35.0%
AATGCATTTGGAGACAACAA+TGG + tig0004829:7693-7712 None:intergenic 35.0%
GATGGTAAATGGAATGCATT+TGG + tig0004829:7705-7724 None:intergenic 35.0%
AAGACAAGTGAGATGGTAAA+TGG + tig0004829:7716-7735 None:intergenic 35.0%
TCAATATTTCTCTCGTTCTC+GGG - tig0004829:7753-7772 Msa1341450:CDS 35.0%
! TCCTTTTCGTGTTATGGAAT+GGG - tig0004829:7785-7804 Msa1341450:intron 35.0%
! AAACAGAAGTTGGTTTATGC+TGG - tig0004829:7870-7889 Msa1341450:intron 35.0%
TCGAAGTGATACTCTACTTA+AGG - tig0004829:7905-7924 Msa1341450:intron 35.0%
AAGGATTATGGAGTAACTGA+TGG - tig0004829:7924-7943 Msa1341450:intron 35.0%
TCAATGTCAAAACATCTTCG+GGG - tig0004829:7991-8010 Msa1341450:intron 35.0%
! GGGGAATGAATTTTCTTTTC+AGG - tig0004829:8010-8029 Msa1341450:intron 35.0%
! GAAACAGTTTGATGATCTTG+AGG - tig0004829:8085-8104 Msa1341450:intron 35.0%
TGCATCTGTTTGTTCGAAAA+AGG - tig0004829:8192-8211 Msa1341450:CDS 35.0%
GTTACAATGGACAACTCAAA+GGG + tig0004829:8239-8258 None:intergenic 35.0%
AGTTACAATGGACAACTCAA+AGG + tig0004829:8240-8259 None:intergenic 35.0%
TTCTCGTGGAAGAAAATTTG+AGG - tig0004829:8301-8320 Msa1341450:CDS 35.0%
! TCCCGATAGAGATTTTCTTT+TGG - tig0004829:8376-8395 Msa1341450:CDS 35.0%
AGCTTCAGTGATTCGAAATA+TGG - tig0004829:8430-8449 Msa1341450:CDS 35.0%
!! TAATGATAATGGAAGACCTC+GGG + tig0004829:8609-8628 None:intergenic 35.0%
!! CTAATGATAATGGAAGACCT+CGG + tig0004829:8610-8629 None:intergenic 35.0%
GGTCTTCCATTATCATTAGA+CGG - tig0004829:8611-8630 Msa1341450:CDS 35.0%
!! GTTTTGGATCATCCAATAAG+TGG - tig0004829:8695-8714 Msa1341450:CDS 35.0%
!! CAAGTTATTTGGTGATGTGA+AGG - tig0004829:8724-8743 Msa1341450:CDS 35.0%
! GTTTTTCACAAACATCTGCA+TGG + tig0004829:8837-8856 None:intergenic 35.0%
TAGTGTACTGGACATAAGAT+TGG - tig0004829:8916-8935 Msa1341450:CDS 35.0%
TAAGATTGGCAAATGCAGAT+AGG - tig0004829:8930-8949 Msa1341450:CDS 35.0%
!!! GAATATTTTGATCAGCACAG+TGG - tig0004829:8961-8980 Msa1341450:CDS 35.0%
AAGCAGTATCCATGATCAAT+TGG + tig0004829:9013-9032 None:intergenic 35.0%
GTGTTGTCAATTGCAAATGA+TGG + tig0004829:9197-9216 None:intergenic 35.0%
ACATAGAAGAATTGCCACAT+CGG + tig0004829:9219-9238 None:intergenic 35.0%
AGCAACAACTGTTAAACGAT+TGG + tig0004829:9413-9432 None:intergenic 35.0%
CCAATAGTTTCAGCAGAATA+CGG + tig0004829:9494-9513 None:intergenic 35.0%
CGTATTCTGCTGAAACTATT+GGG - tig0004829:9492-9511 Msa1341450:CDS 35.0%
TATTGGGTACATAAAGTCAC+TGG - tig0004829:9508-9527 Msa1341450:CDS 35.0%
!!! CACTTTTGAAGTTTCATGGA+TGG - tig0004829:9549-9568 Msa1341450:CDS 35.0%
!! TCAACCATGCTTTTGAAGAA+AGG - tig0004829:9608-9627 Msa1341450:five_prime_UTR 35.0%
!! CAACCATGCTTTTGAAGAAA+GGG - tig0004829:9609-9628 Msa1341450:five_prime_UTR 35.0%
!! AACCATGCTTTTGAAGAAAG+GGG - tig0004829:9610-9629 Msa1341450:five_prime_UTR 35.0%
CAAGTTTCCAATTGCAAAAG+GGG + tig0004829:9651-9670 None:intergenic 35.0%
AATTGGAAACTTGATGTGCA+GGG - tig0004829:9658-9677 Msa1341450:five_prime_UTR 35.0%
!! AGATGCTGTTTCTCAAATCA+TGG - tig0004829:9769-9788 Msa1341450:five_prime_UTR 35.0%
TTAGTGCAAAAGAGGGTAAC+GGG + tig0004829:7222-7241 None:intergenic 40.0%
CATACTCCTACCTAGCTTAA+AGG + tig0004829:7421-7440 None:intergenic 40.0%
!! GGTTGAGCTGTTTGTTATGA+TGG - tig0004829:7501-7520 Msa1341450:CDS 40.0%
TGTTAGTACTCTTAGTCCAG+TGG - tig0004829:7656-7675 Msa1341450:CDS 40.0%
! ACCATCTCACTTGTCTTTTG+AGG - tig0004829:7719-7738 Msa1341450:CDS 40.0%
TCCTCAAAAGACAAGTGAGA+TGG + tig0004829:7723-7742 None:intergenic 40.0%
!! GTTGACTCCTTTTCGTGTTA+TGG - tig0004829:7779-7798 Msa1341450:intron 40.0%
! CTCCTTTTCGTGTTATGGAA+TGG - tig0004829:7784-7803 Msa1341450:intron 40.0%
TCCCATTCCATAACACGAAA+AGG + tig0004829:7789-7808 None:intergenic 40.0%
!!! TTTTCTTTTCAGGTCGAACG+AGG - tig0004829:8020-8039 Msa1341450:intron 40.0%
CAAGCGAAGGATTGCTAAAA+AGG - tig0004829:8061-8080 Msa1341450:intron 40.0%
AGCAGGAACTTGTGTGTAAT+GGG - tig0004829:8108-8127 Msa1341450:intron 40.0%
! AACTTGTGTGTAATGGGGAA+CGG - tig0004829:8114-8133 Msa1341450:intron 40.0%
GTCCATTGTAACTACAGACT+TGG - tig0004829:8247-8266 Msa1341450:CDS 40.0%
AGCCAAGTCTGTAGTTACAA+TGG + tig0004829:8252-8271 None:intergenic 40.0%
! CGTGGAAGAAAATTTGAGGT+TGG - tig0004829:8305-8324 Msa1341450:CDS 40.0%
! GGAAGAAAATTTGAGGTTGG+TGG - tig0004829:8308-8327 Msa1341450:CDS 40.0%
ATGGTAAACTCTGCATACGA+TGG - tig0004829:8449-8468 Msa1341450:CDS 40.0%
GCTAGCGAATACTATCCAAT+AGG - tig0004829:8476-8495 Msa1341450:CDS 40.0%
TATCCAATAGGATCTGCAGA+AGG - tig0004829:8488-8507 Msa1341450:CDS 40.0%
!! AATGATAATGGAAGACCTCG+GGG + tig0004829:8608-8627 None:intergenic 40.0%
CCTTCACCGTCTAATGATAA+TGG + tig0004829:8620-8639 None:intergenic 40.0%
CCATTATCATTAGACGGTGA+AGG - tig0004829:8617-8636 Msa1341450:CDS 40.0%
AGACGGTGAAGGCTTAAAAA+AGG - tig0004829:8628-8647 Msa1341450:CDS 40.0%
GACGGTGAAGGCTTAAAAAA+GGG - tig0004829:8629-8648 Msa1341450:CDS 40.0%
! AAGGGTACAATAGTTGGTCA+AGG - tig0004829:8647-8666 Msa1341450:CDS 40.0%
!! GGAAGTTGCTGCTTATGTTT+TGG - tig0004829:8679-8698 Msa1341450:CDS 40.0%
AAGCACTTGACCATCAATGT+TGG + tig0004829:8767-8786 None:intergenic 40.0%
ATGGTCAAGTGCTTGCATAA+GGG - tig0004829:8773-8792 Msa1341450:CDS 40.0%
CATAAGGGATTTAACCATCC+AGG - tig0004829:8788-8807 Msa1341450:CDS 40.0%
AATGGGAGCTGTGAAGATAT+CGG - tig0004829:8857-8876 Msa1341450:CDS 40.0%
!!! TATTTTGATCAGCACAGTGG+AGG - tig0004829:8964-8983 Msa1341450:CDS 40.0%
!! GTTCTGGTTCCAATTGATCA+TGG - tig0004829:9001-9020 Msa1341450:CDS 40.0%
! GTACTTTTGAATGGCGTTAC+TGG - tig0004829:9453-9472 Msa1341450:CDS 40.0%
CCGTATTCTGCTGAAACTAT+TGG - tig0004829:9491-9510 Msa1341450:CDS 40.0%
AGAGTTCGAGCACATTCAAT+TGG + tig0004829:9581-9600 None:intergenic 40.0%
AACCCCTTTCTTCAAAAGCA+TGG + tig0004829:9615-9634 None:intergenic 40.0%
CAATTGGAAACTTGATGTGC+AGG - tig0004829:9657-9676 Msa1341450:five_prime_UTR 40.0%
GAACAAGGAATCTGTGATAG+AGG - tig0004829:9688-9707 Msa1341450:five_prime_UTR 40.0%
TGAAAATCTTATCAAGGCGC+TGG + tig0004829:9796-9815 None:intergenic 40.0%
!! CAACGGAGGTTTGTTTTCTT+TGG - tig0004829:9917-9936 Msa1341450:five_prime_UTR 40.0%
!! GGAGGTTTGTTTTCTTTGGT+TGG - tig0004829:9921-9940 Msa1341450:five_prime_UTR 40.0%
AGCTTCCACCTTTCGATCTA+CGG - tig0004829:7252-7271 Msa1341450:three_prime_UTR 45.0%
AAACGACACCGTAGATCGAA+AGG + tig0004829:7263-7282 None:intergenic 45.0%
ATGGAAGACTCTCACACCTT+TGG + tig0004829:7839-7858 None:intergenic 45.0%
TATCACTTCGAGCGAGTTCA+CGG + tig0004829:7896-7915 None:intergenic 45.0%
!!! TTTTCAGGTCGAACGAGGTA+GGG - tig0004829:8025-8044 Msa1341450:intron 45.0%
! GTTTGATGATCTTGAGGAGC+AGG - tig0004829:8091-8110 Msa1341450:intron 45.0%
GAGCAGGAACTTGTGTGTAA+TGG - tig0004829:8107-8126 Msa1341450:intron 45.0%
GCAGGAACTTGTGTGTAATG+GGG - tig0004829:8109-8128 Msa1341450:intron 45.0%
CTGCAAGCATAATGATGCAG+TGG - tig0004829:8169-8188 Msa1341450:intron 45.0%
TCTCTATCGGGAAGCTTTCT+TGG + tig0004829:8368-8387 None:intergenic 45.0%
GTACCTTCTGCAGATCCTAT+TGG + tig0004829:8494-8513 None:intergenic 45.0%
! ATAGGATCTGCAGAAGGTAC+CGG - tig0004829:8494-8513 Msa1341450:CDS 45.0%
AAGCATAAAGTAAGCTCCCC+CGG + tig0004829:8516-8535 None:intergenic 45.0%
!! ATGATAATGGAAGACCTCGG+GGG + tig0004829:8607-8626 None:intergenic 45.0%
AACTTGCGACGTCCACTTAT+TGG + tig0004829:8710-8729 None:intergenic 45.0%
AGTGGACGTCGCAAGTTATT+TGG - tig0004829:8713-8732 Msa1341450:CDS 45.0%
TGGTGTTCCTCCAACATTGA+TGG - tig0004829:8754-8773 Msa1341450:CDS 45.0%
CACTTGACCATCAATGTTGG+AGG + tig0004829:8764-8783 None:intergenic 45.0%
GATGGTCAAGTGCTTGCATA+AGG - tig0004829:8772-8791 Msa1341450:CDS 45.0%
TAACCATCCAGGAGACTTGA+TGG - tig0004829:8799-8818 Msa1341450:CDS 45.0%
ATCTTAGCCATCAAGTCTCC+TGG + tig0004829:8809-8828 None:intergenic 45.0%
! GGAGACTTGATGGCTAAGAT+TGG - tig0004829:8809-8828 Msa1341450:CDS 45.0%
CAAATGCAGATAGGCATGCT+GGG - tig0004829:8939-8958 Msa1341450:CDS 45.0%
CAATTGGAACCAGAACAGAC+TGG + tig0004829:8997-9016 None:intergenic 45.0%
TGCAATTGACAACACCGATG+TGG - tig0004829:9202-9221 Msa1341450:CDS 45.0%
TAGTTTCAGCAGAATACGGC+TGG + tig0004829:9490-9509 None:intergenic 45.0%
TTGAAGAAAGGGGTTGAGAG+AGG - tig0004829:9620-9639 Msa1341450:five_prime_UTR 45.0%
! GGATTGACCCCTTTTGCAAT+TGG - tig0004829:9641-9660 Msa1341450:five_prime_UTR 45.0%
GTGCAGGGAATCATTGAACA+AGG - tig0004829:9673-9692 Msa1341450:five_prime_UTR 45.0%
GCATTTGAGTCTGTTCTTCC+TGG - tig0004829:9725-9744 Msa1341450:five_prime_UTR 45.0%
AATGTAGCTTCACTTGTGCC+AGG + tig0004829:9746-9765 None:intergenic 45.0%
GGAGACAACAATGGCTCAGT+GGG + tig0004829:7684-7703 None:intergenic 50.0%
TGGAGACAACAATGGCTCAG+TGG + tig0004829:7685-7704 None:intergenic 50.0%
!!! CTTTTCAGGTCGAACGAGGT+AGG - tig0004829:8024-8043 Msa1341450:intron 50.0%
! TGTGTGTAATGGGGAACGGT+TGG - tig0004829:8118-8137 Msa1341450:intron 50.0%
TACCGATGCCATTCAGAGAG+CGG - tig0004829:8340-8359 Msa1341450:CDS 50.0%
!! TAGGATCTGCAGAAGGTACC+GGG - tig0004829:8495-8514 Msa1341450:CDS 50.0%
!! TAGTTGGTCAAGGAGCGTTC+AGG - tig0004829:8657-8676 Msa1341450:CDS 50.0%
!! AGTTGGTCAAGGAGCGTTCA+GGG - tig0004829:8658-8677 Msa1341450:CDS 50.0%
! GGTGATGTGAAGGGTTTTGC+TGG - tig0004829:8734-8753 Msa1341450:CDS 50.0%
TAGCCATCAAGTCTCCTGGA+TGG + tig0004829:8805-8824 None:intergenic 50.0%
AGCTGTGAAGATATCGGTCC+TGG - tig0004829:8863-8882 Msa1341450:CDS 50.0%
GCTGTGAAGATATCGGTCCT+GGG - tig0004829:8864-8883 Msa1341450:CDS 50.0%
CTGTGAAGATATCGGTCCTG+GGG - tig0004829:8865-8884 Msa1341450:CDS 50.0%
GCAAATGCAGATAGGCATGC+TGG - tig0004829:8938-8957 Msa1341450:CDS 50.0%
GGACAATGACCAGTCTGTTC+TGG - tig0004829:8985-9004 Msa1341450:CDS 50.0%
CGACACCGTAGATCGAAAGG+TGG + tig0004829:7260-7279 None:intergenic 55.0%
AATGGCTCAGTGGGATCCAC+TGG + tig0004829:7675-7694 None:intergenic 55.0%
! GTGTAATGGGGAACGGTTGG+AGG - tig0004829:8121-8140 Msa1341450:intron 55.0%
CACCGCTCTCTGAATGGCAT+CGG + tig0004829:8345-8364 None:intergenic 55.0%
TCTTGGCACCGCTCTCTGAA+TGG + tig0004829:8351-8370 None:intergenic 55.0%
!! AGGATCTGCAGAAGGTACCG+GGG - tig0004829:8496-8515 Msa1341450:CDS 55.0%
GCCTATCGACGAAGAGCCAA+TGG - tig0004829:8571-8590 Msa1341450:CDS 55.0%
!! GCCATTGGCTCTTCGTCGAT+AGG + tig0004829:8575-8594 None:intergenic 55.0%
CGGGGGTTATTCACAGCCAT+TGG + tig0004829:8590-8609 None:intergenic 55.0%
ATGGCTGTGAATAACCCCCG+AGG - tig0004829:8590-8609 Msa1341450:CDS 55.0%
TCATTTACCGGGAAAGCCCC+AGG + tig0004829:8884-8903 None:intergenic 55.0%
AGAATACGGCTGGCGAGCTT+GGG + tig0004829:9480-9499 None:intergenic 55.0%
!! GGATCTGCAGAAGGTACCGG+GGG - tig0004829:8497-8516 Msa1341450:CDS 60.0%
TATCGGTCCTGGGGCTTTCC+CGG - tig0004829:8874-8893 Msa1341450:CDS 60.0%
GAATACGGCTGGCGAGCTTG+GGG + tig0004829:9479-9498 None:intergenic 60.0%
CAGAATACGGCTGGCGAGCT+TGG + tig0004829:9481-9500 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0004829 gene 7158 10071 7158 ID=Msa1341450;Name=Msa1341450
tig0004829 mRNA 7158 10071 7158 ID=Msa1341450-mRNA-1;Parent=Msa1341450;Name=Msa1341450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=484|1|1|1|1|1|2|242|595
tig0004829 exon 7158 7786 7158 ID=Msa1341450-mRNA-1:exon:3210;Parent=Msa1341450-mRNA-1
tig0004829 exon 8187 10071 8187 ID=Msa1341450-mRNA-1:exon:3209;Parent=Msa1341450-mRNA-1
tig0004829 five_prime_UTR 9588 10071 9588 ID=Msa1341450-mRNA-1:five_prime_utr;Parent=Msa1341450-mRNA-1
tig0004829 CDS 8187 9587 8187 ID=Msa1341450-mRNA-1:cds;Parent=Msa1341450-mRNA-1
tig0004829 CDS 7400 7786 7400 ID=Msa1341450-mRNA-1:cds;Parent=Msa1341450-mRNA-1
tig0004829 three_prime_UTR 7158 7399 7158 ID=Msa1341450-mRNA-1:three_prime_utr;Parent=Msa1341450-mRNA-1
Gene Sequence

>Msa1341450

ATGTCATCTGCTGGTGTTAGTACTCTTAGTCCAGTGGATCCCACTGAGCCATTGTTGTCTCCAAATGCATTCCATTTACCATCTCACTTGTCTTTTGAGGACAAATCCATTTCAATATTTCTCTCGTTCTCGGGTTCGTTGACTCCTTTTCGTGTTATGGAATGGGATACTATTGAGTCTGTTAAGTTCAAAATCCAAAGGTGTGAGAGTCTTCCATTTTTAACTAACAAACAGAAGTTGGTTTATGCTGGCCGTGAACTCGCTCGAAGTGATACTCTACTTAAGGATTATGGAGTAACTGATGGAAATGTTTTGCATTTGATAATCAAATTATCAGATCTTCAACTCATCAATGTCAAAACATCTTCGGGGAATGAATTTTCTTTTCAGGTCGAACGAGGTAGGGATGTAAAATACATCAAGCGAAGGATTGCTAAAAAGGAGAAACAGTTTGATGATCTTGAGGAGCAGGAACTTGTGTGTAATGGGGAACGGTTGGAGGATCAGAAGCTTATTGATGACATCTGCTGCAAGCATAATGATGCAGTGGTGCATCTGTTTGTTCGAAAAAGGAATGCAAAAGTTCATAGAAGACCCTTTGAGTTGTCCATTGTAACTACAGACTTGGCTGATACGAAAACTGACGATGTTTTTGAAAATTCTCGTGGAAGAAAATTTGAGGTTGGTGGTGTAGAAGATACCGATGCCATTCAGAGAGCGGTGCCAAGAAAGCTTCCCGATAGAGATTTTCTTTTGGAGCCAATTATAGTTAACCCTAAAATTGAGTTAGCTTCAGTGATTCGAAATATGGTAAACTCTGCATACGATGGACTAGCTAGCGAATACTATCCAATAGGATCTGCAGAAGGTACCGGGGGAGCTTACTTTATGCTTGATTCAACTGGTCAGAAGTATGTGTCTGTTTTTAAGCCTATCGACGAAGAGCCAATGGCTGTGAATAACCCCCGAGGTCTTCCATTATCATTAGACGGTGAAGGCTTAAAAAAGGGTACAATAGTTGGTCAAGGAGCGTTCAGGGAAGTTGCTGCTTATGTTTTGGATCATCCAATAAGTGGACGTCGCAAGTTATTTGGTGATGTGAAGGGTTTTGCTGGTGTTCCTCCAACATTGATGGTCAAGTGCTTGCATAAGGGATTTAACCATCCAGGAGACTTGATGGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAACAATGGGAGCTGTGAAGATATCGGTCCTGGGGCTTTCCCGGTAAATGAAGTACACAAAATTAGTGTACTGGACATAAGATTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGTGGAGGACAATGACCAGTCTGTTCTGGTTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACTTTTGAATGGCGTTACTGGCCCCAAGCTCGCCAGCCGTATTCTGCTGAAACTATTGGGTACATAAAGTCACTGGATGCTGAAGAAGATATTGCACTTTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCTCGAACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACCCCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAGGAATCTGTGATAGAGGAAATAGTTGAAGAAGCATTTGAGTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTAGATGCTGTTTCTCAAATCATGGACCAGCGCCTTGATAAGATTTTCAACTCTCTTTTTTAA
Protein sequence

>Msa1341450

MSSAGVSTLSPVDPTEPLLSPNAFHLPSHLSFEDKSISIFLSFSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGNEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAVVHLFVRKRNAKVHRRPFELSIVTTDLADTKTDDVFENSRGRKFEVGGVEDTDAIQRAVPRKLPDRDFLLEPIIVNPKIELASVIRNMVNSAYDGLASEYYPIGSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTIVGQGAFREVAAYVLDHPISGRRKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLMAKIGSMQMFVKNNGSCEDIGPGAFPVNEVHKISVLDIRLANADRHAGNILISTVEDNDQSVLVPIDHGYCLPTSFEDCTFEWRYWPQARQPYSAETIGYIKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEAFESVLPGTSEATLLDAVSQIMDQRLDKIFNSLF*