AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130490 MtrunA17_Chr7g0275661 98.992 595 6 0 1 595 1 595 0.0 1212
Msa1130490 MtrunA17_Chr8g0346901 70.519 597 162 5 1 590 1 590 0.0 845
Msa1130490 MtrunA17_Chr3g0126781 56.966 567 221 7 35 591 25 578 0.0 641
Msa1130490 MtrunA17_Chr8g0388301 57.692 572 217 9 37 590 27 591 0.0 638
Msa1130490 MtrunA17_Chr5g0396531 55.478 575 226 10 29 590 23 580 0.0 629
Msa1130490 MtrunA17_Chr8g0366091 39.189 296 150 6 266 547 146 425 1.83e-59 209
Msa1130490 MtrunA17_Chr5g0420771 40.000 300 146 7 266 547 148 431 8.29e-59 207
Msa1130490 MtrunA17_Chr7g0255481 38.487 304 159 6 258 547 76 365 5.32e-57 198
Msa1130490 MtrunA17_Chr7g0220391 40.214 281 135 8 284 547 162 426 5.24e-55 197
Msa1130490 MtrunA17_Chr7g0274921 32.075 159 101 5 36 193 2 154 1.39e-14 73.6
Msa1130490 MtrunA17_Chr7g0274921 31.646 158 101 5 37 193 79 230 4.98e-14 72.0
Msa1130490 MtrunA17_Chr6g0475961 32.051 156 99 5 37 191 4 153 1.68e-14 72.4
Msa1130490 MtrunA17_Chr1g0181441 31.646 158 101 5 37 193 1 152 3.99e-14 72.4
Msa1130490 MtrunA17_Chr1g0181441 31.646 158 101 5 37 193 77 228 3.99e-14 72.4
Msa1130490 MtrunA17_Chr4g0041751 31.013 158 102 5 37 193 1 152 4.79e-14 72.0
Msa1130490 MtrunA17_Chr4g0037241 33.333 135 84 4 37 170 1 130 1.71e-13 68.6
Msa1130490 MtrunA17_Chr5g0444101 33.333 135 84 4 37 170 1 130 1.71e-13 68.6
Msa1130490 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 9 160 2.21e-13 72.4
Msa1130490 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 85 236 2.21e-13 72.4
Msa1130490 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 161 312 2.21e-13 72.4
Msa1130490 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 237 388 2.21e-13 72.4
Msa1130490 MtrunA17_Chr4g0046801 31.447 159 102 5 36 193 3 155 2.31e-13 72.8
Msa1130490 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 80 231 3.38e-13 72.0
Msa1130490 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 156 307 3.38e-13 72.0
Msa1130490 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 232 383 3.38e-13 72.0
Msa1130490 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 308 459 3.38e-13 72.0
Msa1130490 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 5 156 2.89e-13 72.4
Msa1130490 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 81 232 2.89e-13 72.4
Msa1130490 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 157 308 2.89e-13 72.4
Msa1130490 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 233 384 2.89e-13 72.4
Msa1130490 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 309 460 2.89e-13 72.4
Msa1130490 MtrunA17_Chr4g0048591 31.447 159 102 5 36 193 3 155 3.05e-13 72.4
Msa1130490 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 232 383 3.83e-13 72.0
Msa1130490 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 80 231 4.44e-13 72.0
Msa1130490 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 156 307 4.44e-13 72.0
Msa1130490 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 384 535 4.44e-13 72.0
Msa1130490 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 4 155 4.10e-13 72.0
Msa1130490 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 80 231 4.10e-13 72.0
Msa1130490 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 156 307 4.10e-13 72.0
Msa1130490 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 232 383 4.10e-13 72.0
Msa1130490 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 308 459 4.10e-13 72.0
Msa1130490 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 384 535 4.10e-13 72.0
Msa1130490 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 1 152 4.26e-13 72.0
Msa1130490 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 77 228 4.26e-13 72.0
Msa1130490 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 153 304 4.26e-13 72.0
Msa1130490 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 229 380 4.26e-13 72.0
Msa1130490 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 305 456 4.26e-13 72.0
Msa1130490 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 381 532 4.26e-13 72.0
Msa1130490 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 80 231 5.30e-13 72.0
Msa1130490 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 156 307 5.30e-13 72.0
Msa1130490 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 368 519 5.30e-13 72.0
Msa1130490 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 444 595 5.30e-13 72.0
Msa1130490 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 4 155 5.98e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130490 AT2G46500.1 58.615 592 210 8 1 588 1 561 0.0 687
Msa1130490 AT2G46500.2 58.615 592 210 8 1 588 1 561 0.0 687
Msa1130490 AT5G24240.1 55.160 562 225 8 34 589 30 570 0.0 616
Msa1130490 AT5G24240.2 55.160 562 225 8 34 589 30 570 0.0 616
Msa1130490 AT2G46500.3 51.773 423 170 7 1 419 1 393 2.37e-142 419
Msa1130490 AT2G03890.1 38.739 333 168 9 254 566 139 455 4.05e-59 209
Msa1130490 AT1G13640.1 39.404 302 146 7 267 547 144 429 5.00e-57 202
Msa1130490 AT1G13640.2 39.404 302 146 7 267 547 144 429 5.00e-57 202
Msa1130490 AT3G56600.2 36.503 326 174 7 257 562 72 384 1.50e-56 199
Msa1130490 AT3G56600.1 36.503 326 174 7 257 562 75 387 1.66e-56 199
Msa1130490 AT3G56600.3 36.503 326 174 7 257 562 75 387 1.66e-56 199
Msa1130490 AT2G40850.1 36.716 335 177 8 259 572 94 414 9.35e-56 198
Msa1130490 AT1G26270.1 38.333 300 152 8 265 547 146 429 1.17e-55 199
Msa1130490 AT2G03890.2 41.304 230 104 6 334 547 99 313 7.46e-45 167
Msa1130490 AT1G27570.1 30.806 211 128 5 344 543 396 599 2.74e-22 101
Msa1130490 AT1G27570.2 30.806 211 128 5 344 543 387 590 3.17e-22 101
Msa1130490 AT4G05320.7 32.051 156 99 5 37 191 1 150 7.71e-15 72.8
Msa1130490 AT4G05050.4 32.051 156 99 5 37 191 1 150 7.71e-15 72.8
Msa1130490 AT2G35635.1 32.051 156 99 5 37 191 1 150 3.52e-14 70.9
Msa1130490 AT4G02890.2 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130490 AT4G02890.2 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130490 AT4G02890.1 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130490 AT4G02890.1 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130490 AT4G05050.2 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130490 AT4G05050.2 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130490 AT4G05050.1 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130490 AT4G05050.1 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130490 AT4G05050.3 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130490 AT4G05050.3 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130490 AT1G31340.1 32.051 156 99 5 37 191 1 150 7.24e-14 70.1
Msa1130490 AT3G43950.1 34.815 135 79 4 347 478 78 206 8.47e-14 71.2
Msa1130490 AT5G03240.3 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130490 AT5G03240.3 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130490 AT5G03240.3 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130490 AT5G03240.2 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130490 AT5G03240.2 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130490 AT5G03240.2 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130490 AT5G03240.1 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130490 AT5G03240.1 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130490 AT5G03240.1 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130490 AT5G20620.2 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130490 AT5G20620.2 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130490 AT5G20620.2 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130490 AT4G05320.5 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130490 AT4G05320.5 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130490 AT4G05320.5 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130490 AT4G05320.8 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130490 AT4G05320.8 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130490 AT4G05320.8 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130490 AT4G02890.3 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130490 AT4G02890.3 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130490 AT4G02890.3 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130490 AT4G02890.4 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130490 AT4G02890.4 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130490 AT4G02890.4 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130490 AT1G65350.1 32.278 158 99 5 37 193 1 151 2.15e-13 72.0
Msa1130490 AT1G65350.1 29.114 158 104 5 37 193 77 227 2.23e-11 65.9
Msa1130490 AT1G55060.1 29.651 172 104 5 33 193 63 228 2.26e-13 70.5
Msa1130490 AT5G20620.1 31.646 158 101 5 37 193 1 152 3.28e-13 72.0
Msa1130490 AT5G20620.1 31.646 158 101 5 37 193 77 228 3.28e-13 72.0
Msa1130490 AT5G20620.1 31.646 158 101 5 37 193 153 304 3.28e-13 72.0
Msa1130490 AT5G20620.1 31.646 158 101 5 37 193 229 380 3.28e-13 72.0
Msa1130490 AT4G05320.1 31.646 158 101 5 37 193 1 152 3.60e-13 72.0
Msa1130490 AT4G05320.1 31.646 158 101 5 37 193 77 228 3.60e-13 72.0
Msa1130490 AT4G05320.1 31.646 158 101 5 37 193 153 304 3.60e-13 72.0
Msa1130490 AT4G05320.1 31.646 158 101 5 37 193 229 380 3.60e-13 72.0
Msa1130490 AT4G05320.6 31.646 158 101 5 37 193 1 152 3.60e-13 72.0
Msa1130490 AT4G05320.6 31.646 158 101 5 37 193 77 228 3.60e-13 72.0
Msa1130490 AT4G05320.6 31.646 158 101 5 37 193 153 304 3.60e-13 72.0
Msa1130490 AT4G05320.6 31.646 158 101 5 37 193 229 380 3.60e-13 72.0
Msa1130490 AT4G05320.3 31.646 158 101 5 37 193 1 152 3.60e-13 72.0
Msa1130490 AT4G05320.3 31.646 158 101 5 37 193 77 228 3.60e-13 72.0
Msa1130490 AT4G05320.3 31.646 158 101 5 37 193 153 304 3.60e-13 72.0
Msa1130490 AT4G05320.3 31.646 158 101 5 37 193 229 380 3.60e-13 72.0
Msa1130490 AT4G05320.2 31.646 158 101 5 37 193 1 152 4.58e-13 72.0
Msa1130490 AT4G05320.2 31.646 158 101 5 37 193 77 228 4.58e-13 72.0
Msa1130490 AT4G05320.2 31.646 158 101 5 37 193 153 304 4.58e-13 72.0
Msa1130490 AT4G05320.2 31.646 158 101 5 37 193 229 380 4.58e-13 72.0
Msa1130490 AT4G05320.2 31.646 158 101 5 37 193 305 456 4.58e-13 72.0
Msa1130490 AT4G05320.4 31.646 158 101 5 37 193 1 152 4.58e-13 72.0
Msa1130490 AT4G05320.4 31.646 158 101 5 37 193 77 228 4.58e-13 72.0
Msa1130490 AT4G05320.4 31.646 158 101 5 37 193 153 304 4.58e-13 72.0
Msa1130490 AT4G05320.4 31.646 158 101 5 37 193 229 380 4.58e-13 72.0
Msa1130490 AT4G05320.4 31.646 158 101 5 37 193 305 456 4.58e-13 72.0
Msa1130490 AT5G37640.1 29.518 166 105 5 52 211 19 178 1.24e-11 66.6

Find 156 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCAGCTTGTTGAATTT+AGG 0.133656 7_3:-82646442 Msa1130490:five_prime_UTR
AACTTGCGACGTCCACTTAT+TGG 0.166902 7_3:+82645016 None:intergenic
GAGGTAAAATTGGTCTCTTT+TGG 0.196561 7_3:-82646395 Msa1130490:five_prime_UTR
CATACTCCTACCTAGCTTAA+AGG 0.229628 7_3:+82646305 None:intergenic
AGCTTCAGTGATTCGAAATA+TGG 0.237481 7_3:-82645293 Msa1130490:CDS
TTTGATCTTTGAGGTAAAAT+TGG 0.241624 7_3:-82646405 Msa1130490:five_prime_UTR
TCTCTATCGGGAAGCTTTCT+TGG 0.255627 7_3:+82645358 None:intergenic
GGAAGTTGCTGCTTATGTTT+TGG 0.257385 7_3:-82645044 Msa1130490:CDS
AGTGGACGTCGCAAGTTATT+TGG 0.265630 7_3:-82645010 Msa1130490:CDS
CAAGCGAAGGATTGCTAAAA+AGG 0.268222 7_3:-82645662 Msa1130490:CDS
TGCATCTGTTTGTTCGAAAA+AGG 0.284524 7_3:-82645531 Msa1130490:CDS
TTATCAGCTTGTTGAATTTA+GGG 0.288456 7_3:-82646441 Msa1130490:five_prime_UTR
TTCAATATTTCTCTCGTTCT+CGG 0.303158 7_3:-82645971 Msa1130490:CDS
CCGTATTCTGCTGAAACTAT+TGG 0.313231 7_3:-82644232 Msa1130490:CDS
AGTGTAAACAAAGGTTATTT+TGG 0.322758 7_3:-82646142 Msa1130490:five_prime_UTR
CAGAATACGGCTGGCGAGCT+TGG 0.326056 7_3:+82644245 None:intergenic
GATACTCTACTTAAGGATTA+TGG 0.332495 7_3:-82645811 Msa1130490:CDS
ATCTTCTAATTTGATCTTTG+AGG 0.333431 7_3:-82646414 Msa1130490:five_prime_UTR
CCTTCACCGTCTAATGATAA+TGG 0.336135 7_3:+82645106 None:intergenic
AGAATACGGCTGGCGAGCTT+GGG 0.336231 7_3:+82644246 None:intergenic
GCATTTGAGTCTGTTCTTCC+TGG 0.336546 7_3:-82643998 Msa1130490:CDS
AAGACAAGTGAGATGGTAAA+TGG 0.339437 7_3:+82646010 None:intergenic
ATGAGTGTCGCTTTAGGCTT+TGG 0.343024 7_3:-82643734 Msa1130490:three_prime_UTR
AGCAGGAACTTGTGTGTAAT+GGG 0.346405 7_3:-82645615 Msa1130490:CDS
AGCTGTGAAGATATCGGTCC+TGG 0.357604 7_3:-82644860 Msa1130490:CDS
ATCAATGTCAAAACATCTTC+GGG 0.363524 7_3:-82645733 Msa1130490:CDS
AAAGTTTGAGAGGGTAAAGT+TGG 0.364705 7_3:-82643596 Msa1130490:three_prime_UTR
TACTTTATGCTTGATTCAAC+TGG 0.367790 7_3:-82645199 Msa1130490:CDS
GGACAATGACCAGTCTGTTC+TGG 0.368416 7_3:-82644738 Msa1130490:CDS
TTGATATCTGCAATAGTAAC+AGG 0.371471 7_3:-82643887 Msa1130490:three_prime_UTR
TTCAAAATGAGTGTCGCTTT+AGG 0.377610 7_3:-82643740 Msa1130490:three_prime_UTR
TAACCATCCAGGAGACTTGA+TGG 0.377723 7_3:-82644924 Msa1130490:CDS
ATGGAAGACTCTCACACCTT+TGG 0.377727 7_3:+82645887 None:intergenic
CGTATTCTGCTGAAACTATT+GGG 0.383361 7_3:-82644231 Msa1130490:CDS
GTACCTTCTGCAGATCCTAT+TGG 0.386108 7_3:+82645232 None:intergenic
GGTTGAGCTGTTTGTTATGA+TGG 0.387025 7_3:-82646222 Msa1130490:five_prime_UTR
CATCAATGTCAAAACATCTT+CGG 0.391195 7_3:-82645734 Msa1130490:CDS
ATAATAATATTTCTACAATT+AGG 0.397748 7_3:+82646249 None:intergenic
ATCAAGTTTCCAATTGCAAA+AGG 0.400969 7_3:+82644073 None:intergenic
GTTATTGAATTGAAATTTGT+AGG 0.401634 7_3:+82646526 None:intergenic
AATTAAATGCTTACACTTGT+GGG 0.404724 7_3:+82644689 None:intergenic
TAGTTGGTCAAGGAGCGTTC+AGG 0.416347 7_3:-82645066 Msa1130490:CDS
AAATGGAATGAAATAATCAT+TGG 0.416426 7_3:-82643698 Msa1130490:three_prime_UTR
GATGGTAAATGGAATGCATT+TGG 0.428711 7_3:+82646021 None:intergenic
TTTAACTAACAAACAGAAGT+TGG 0.431926 7_3:-82645863 Msa1130490:CDS
TGGTGTTCCTCCAACATTGA+TGG 0.433858 7_3:-82644969 Msa1130490:CDS
TCTTGGCACCGCTCTCTGAA+TGG 0.434707 7_3:+82645375 None:intergenic
TCAATATTTCTCTCGTTCTC+GGG 0.438311 7_3:-82645970 Msa1130490:CDS
TCGAAGTGATACTCTACTTA+AGG 0.438824 7_3:-82645818 Msa1130490:CDS
GATGGTCAAGTGCTTGCATA+AGG 0.443223 7_3:-82644951 Msa1130490:CDS
AGCTTCCACCTTTCGATCTA+CGG 0.445912 7_3:-82646471 Msa1130490:five_prime_UTR
CAATTGGAAACTTGATGTGC+AGG 0.450882 7_3:-82644066 Msa1130490:CDS
AGAGTTCGAGCACATTCAAT+TGG 0.454661 7_3:+82644145 None:intergenic
GAACGAGAGAAATATTGAAA+TGG 0.459276 7_3:+82645975 None:intergenic
GTTCTGGTTCCAATTGATCA+TGG 0.461509 7_3:-82644722 Msa1130490:CDS
ATCTTAGCCATCAAGTCTCC+TGG 0.464083 7_3:+82644917 None:intergenic
CTCCAAAAGAAAATCTCTAT+CGG 0.467054 7_3:+82645345 None:intergenic
GTTTGATGATCTTGAGGAGC+AGG 0.472677 7_3:-82645632 Msa1130490:CDS
GCTAGCGAATACTATCCAAT+AGG 0.473031 7_3:-82645247 Msa1130490:CDS
TAATGATAATGGAAGACCTC+GGG 0.474414 7_3:+82645117 None:intergenic
TTGAAGAAAGGGGTTGAGAG+AGG 0.478531 7_3:-82644103 Msa1130490:CDS
TTGGCACACAGATTAAGAAA+TGG 0.480404 7_3:-82643715 Msa1130490:three_prime_UTR
CCAATAGTTTCAGCAGAATA+CGG 0.480969 7_3:+82644232 None:intergenic
TTGAGCAATTAGTGCAAAAG+AGG 0.481203 7_3:+82646496 None:intergenic
TCCCATTCCATAACACGAAA+AGG 0.482974 7_3:+82645937 None:intergenic
AAATTAAATGCTTACACTTG+TGG 0.484991 7_3:+82644688 None:intergenic
CATAAGGGATTTAACCATCC+AGG 0.485124 7_3:-82644935 Msa1130490:CDS
AAGCAGTATCCATGATCAAT+TGG 0.485316 7_3:+82644713 None:intergenic
AGTTGGTCAAGGAGCGTTCA+GGG 0.486553 7_3:-82645065 Msa1130490:CDS
GAACAAGGAATCTGTGATAG+AGG 0.486875 7_3:-82644035 Msa1130490:CDS
TTAGTGCAAAAGAGGGTAAC+GGG 0.487025 7_3:+82646504 None:intergenic
TCAAGTTTCCAATTGCAAAA+GGG 0.487387 7_3:+82644074 None:intergenic
AACCCCTTTCTTCAAAAGCA+TGG 0.489309 7_3:+82644111 None:intergenic
AATGGCTCAGTGGGATCCAC+TGG 0.494737 7_3:+82646051 None:intergenic
GGAGACTTGATGGCTAAGAT+TGG 0.495959 7_3:-82644914 Msa1130490:CDS
ATAGGATCTGCAGAAGGTAC+CGG 0.497760 7_3:-82645229 Msa1130490:CDS
TGTAGAAATATTATTATGCA+TGG 0.497787 7_3:-82646243 Msa1130490:five_prime_UTR
TATCACTTCGAGCGAGTTCA+CGG 0.499648 7_3:+82645830 None:intergenic
AGATGCTGTTTCTCAAATCA+TGG 0.499783 7_3:-82643954 Msa1130490:CDS
TTCTTGTGGAAGAAAATTTG+AGG 0.501544 7_3:-82645422 Msa1130490:CDS
GCAAATGCAGATAGGCATGC+TGG 0.503643 7_3:-82644785 Msa1130490:CDS
AAACAGAAGTTGGTTTATGC+TGG 0.505699 7_3:-82645853 Msa1130490:CDS
AGTACACAAAATTAGTGTAC+TGG 0.506035 7_3:-82644819 Msa1130490:CDS
CAAGTTATTTGGTGATGTGA+AGG 0.508171 7_3:-82644999 Msa1130490:CDS
TCCAAAAGAAAATCTCTATC+GGG 0.509865 7_3:+82645346 None:intergenic
GCCATTGGCTCTTCGTCGAT+AGG 0.511038 7_3:+82645151 None:intergenic
TAGTGTACTGGACATAAGAT+TGG 0.513283 7_3:-82644807 Msa1130490:CDS
GAGTAAGTTATAACAAAGAA+TGG 0.513459 7_3:+82643770 None:intergenic
GAGAGTTGAAAATCTTATCA+AGG 0.515143 7_3:+82643924 None:intergenic
TAAGATTGGCAAATGCAGAT+AGG 0.515290 7_3:-82644793 Msa1130490:CDS
CAAGTTTCCAATTGCAAAAG+GGG 0.516578 7_3:+82644075 None:intergenic
CCATTATCATTAGACGGTGA+AGG 0.523513 7_3:-82645106 Msa1130490:CDS
TAGGATCTGCAGAAGGTACC+GGG 0.527750 7_3:-82645228 Msa1130490:CDS
TGTGGAAGAAAATTTGAGGT+TGG 0.531735 7_3:-82645418 Msa1130490:CDS
GTGTAATGGGGAACGGTTGG+AGG 0.532109 7_3:-82645602 Msa1130490:CDS
AAGTTATTTGGTGATGTGAA+GGG 0.535843 7_3:-82644998 Msa1130490:CDS
CACCGCTCTCTGAATGGCAT+CGG 0.538669 7_3:+82645381 None:intergenic
GCTGTGAAGATATCGGTCCT+GGG 0.539152 7_3:-82644859 Msa1130490:CDS
GAAACAGTTTGATGATCTTG+AGG 0.541679 7_3:-82645638 Msa1130490:CDS
TCATTTACCGGGAAAGCCCC+AGG 0.542503 7_3:+82644842 None:intergenic
GGAAGAAAATTTGAGGTTGG+TGG 0.542977 7_3:-82645415 Msa1130490:CDS
GAGCAGGAACTTGTGTGTAA+TGG 0.543660 7_3:-82645616 Msa1130490:CDS
AATGTAGCTTCACTTGTGCC+AGG 0.546538 7_3:+82643980 None:intergenic
TATTGGGTACATAAAGTCAC+TGG 0.549010 7_3:-82644215 Msa1130490:CDS
TAGTTTCAGCAGAATACGGC+TGG 0.549860 7_3:+82644236 None:intergenic
GGAGACAACAATGGCTCAGT+GGG 0.550782 7_3:+82646042 None:intergenic
TGAAAATCTTATCAAGGCGC+TGG 0.555048 7_3:+82643930 None:intergenic
TGTGAGAGAAAAGTTTGAGA+GGG 0.557080 7_3:-82643605 Msa1130490:three_prime_UTR
ATGGTCAAGTGCTTGCATAA+GGG 0.559797 7_3:-82644950 Msa1130490:CDS
AATGGGAGCTGTGAAGATAT+CGG 0.559895 7_3:-82644866 Msa1130490:CDS
GCCTATCGACGAAGAGCCAA+TGG 0.563365 7_3:-82645152 Msa1130490:CDS
GTTACAATGGACAACTCAAA+GGG 0.565579 7_3:+82645487 None:intergenic
AAGGATTATGGAGTAACTGA+TGG 0.571025 7_3:-82645799 Msa1130490:CDS
AGTTACAATGGACAACTCAA+AGG 0.571959 7_3:+82645486 None:intergenic
CAAATGCAGATAGGCATGCT+GGG 0.572744 7_3:-82644784 Msa1130490:CDS
GTGTGAGAGAAAAGTTTGAG+AGG 0.572922 7_3:-82643606 Msa1130490:three_prime_UTR
CACTTGACCATCAATGTTGG+AGG 0.573274 7_3:+82644962 None:intergenic
GAATACGGCTGGCGAGCTTG+GGG 0.573463 7_3:+82644247 None:intergenic
TGTGTGTAATGGGGAACGGT+TGG 0.578859 7_3:-82645605 Msa1130490:CDS
AAGCATAAAGTAAGCTCCCC+CGG 0.581274 7_3:+82645210 None:intergenic
ATTAGTGCAAAAGAGGGTAA+CGG 0.581518 7_3:+82646503 None:intergenic
GTCCATTGTAACTACAGACT+TGG 0.582693 7_3:-82645476 Msa1130490:CDS
TGTTAGTACTCTTAGTCCAG+TGG 0.584156 7_3:-82646067 Msa1130490:CDS
TGAGCAATTAGTGCAAAAGA+GGG 0.585294 7_3:+82646497 None:intergenic
TTGATTCTCAGTGTAAACAA+AGG 0.588245 7_3:-82646151 Msa1130490:five_prime_UTR
GGTCTTCCATTATCATTAGA+CGG 0.588994 7_3:-82645112 Msa1130490:CDS
TCCTCAAAAGACAAGTGAGA+TGG 0.590743 7_3:+82646003 None:intergenic
ATATGTATAGCTCAAAACAT+TGG 0.592974 7_3:-82643844 Msa1130490:three_prime_UTR
AGCCAAGTCTGTAGTTACAA+TGG 0.593929 7_3:+82645474 None:intergenic
AAGGGTACAATAGTTGGTCA+AGG 0.598430 7_3:-82645076 Msa1130490:CDS
TTAGTGAAAATGTCATCTGC+TGG 0.606185 7_3:-82646090 Msa1130490:exon
ATGTAAAATACATCAAGCGA+AGG 0.618575 7_3:-82645675 Msa1130490:CDS
AAACGACACCGTAGATCGAA+AGG 0.619213 7_3:+82646463 None:intergenic
ATGGTAAACTCTGCATACGA+TGG 0.619677 7_3:-82645274 Msa1130490:CDS
AAGCACTTGACCATCAATGT+TGG 0.627426 7_3:+82644959 None:intergenic
TACCGATGCCATTCAGAGAG+CGG 0.639607 7_3:-82645383 Msa1130490:CDS
CTGTGAAGATATCGGTCCTG+GGG 0.640174 7_3:-82644858 Msa1130490:CDS
TAGCCATCAAGTCTCCTGGA+TGG 0.640520 7_3:+82644921 None:intergenic
CTGCAAGCATAATGATGCAG+TGG 0.641116 7_3:-82645554 Msa1130490:CDS
CTAATGATAATGGAAGACCT+CGG 0.646268 7_3:+82645116 None:intergenic
AACTTGTGTGTAATGGGGAA+CGG 0.646813 7_3:-82645609 Msa1130490:CDS
TGGAGACAACAATGGCTCAG+TGG 0.649706 7_3:+82646041 None:intergenic
AATTGGAAACTTGATGTGCA+GGG 0.653610 7_3:-82644065 Msa1130490:CDS
GTGCAGGGAATCATTGAACA+AGG 0.654835 7_3:-82644050 Msa1130490:CDS
CTGTTAAGTTCAAAATCCAA+AGG 0.656079 7_3:-82645903 Msa1130490:CDS
AATGCATTTGGAGACAACAA+TGG 0.660019 7_3:+82646033 None:intergenic
AATGATAATGGAAGACCTCG+GGG 0.661241 7_3:+82645118 None:intergenic
CAATTGGAACCAGAACAGAC+TGG 0.671066 7_3:+82644729 None:intergenic
AAACTCAATGATGATGACGA+TGG 0.676648 7_3:+82646554 None:intergenic
AGGATCTGCAGAAGGTACCG+GGG 0.678821 7_3:-82645227 Msa1130490:CDS
GCAGGAACTTGTGTGTAATG+GGG 0.680555 7_3:-82645614 Msa1130490:CDS
TATCCAATAGGATCTGCAGA+AGG 0.683129 7_3:-82645235 Msa1130490:CDS
CGACACCGTAGATCGAAAGG+TGG 0.695095 7_3:+82646466 None:intergenic
TCAATGTCAAAACATCTTCG+GGG 0.701785 7_3:-82645732 Msa1130490:CDS
GGATCTGCAGAAGGTACCGG+GGG 0.709644 7_3:-82645226 Msa1130490:CDS
ATGATAATGGAAGACCTCGG+GGG 0.745031 7_3:+82645119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATATTTCTACAATT+AGG + chr7_3:82643827-82643846 None:intergenic 10.0%
!! TTATGACTTAAAAAATGAAT+TGG - chr7_3:82645641-82645660 Msa1130490:CDS 15.0%
!! GTTATTGAATTGAAATTTGT+AGG + chr7_3:82643550-82643569 None:intergenic 20.0%
!! AAAAACTAATACGAACAAAA+AGG + chr7_3:82643741-82643760 None:intergenic 20.0%
!! TGTAGAAATATTATTATGCA+TGG - chr7_3:82643830-82643849 Msa1130490:three_prime_UTR 20.0%
!!! TTCTGTTTGTTAGTTAAAAA+TGG + chr7_3:82644208-82644227 None:intergenic 20.0%
!!! ATTTTAGGGTTAACTATAAT+TGG + chr7_3:82644754-82644773 None:intergenic 20.0%
!!! AACATAATGTTTTCAAATAG+TGG - chr7_3:82645467-82645486 Msa1130490:CDS 20.0%
!! AAATGGAATGAAATAATCAT+TGG - chr7_3:82646375-82646394 Msa1130490:five_prime_UTR 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG + chr7_3:82646424-82646443 None:intergenic 20.0%
!! GAAAAAAATTAAAGTTGCAT+TGG - chr7_3:82646502-82646521 Msa1130490:five_prime_UTR 20.0%
!!! TTTATCAGCTTGTTGAATTT+AGG - chr7_3:82643631-82643650 Msa1130490:three_prime_UTR 25.0%
!!! TTATCAGCTTGTTGAATTTA+GGG - chr7_3:82643632-82643651 Msa1130490:three_prime_UTR 25.0%
! ATCTTCTAATTTGATCTTTG+AGG - chr7_3:82643659-82643678 Msa1130490:three_prime_UTR 25.0%
!!! TTTGATCTTTGAGGTAAAAT+TGG - chr7_3:82643668-82643687 Msa1130490:three_prime_UTR 25.0%
!! AAAAAGGAAAGATCTTTTGA+AGG + chr7_3:82643725-82643744 None:intergenic 25.0%
! TTTGAAAAAACCTTTAAGCT+AGG - chr7_3:82643758-82643777 Msa1130490:three_prime_UTR 25.0%
!!! ATTTGTAGACTTTAGTTTTG+AGG - chr7_3:82643886-82643905 Msa1130490:three_prime_UTR 25.0%
!!! TTTGTAGACTTTAGTTTTGA+GGG - chr7_3:82643887-82643906 Msa1130490:three_prime_UTR 25.0%
!! AGTGTAAACAAAGGTTATTT+TGG - chr7_3:82643931-82643950 Msa1130490:CDS 25.0%
! TTTAACTAACAAACAGAAGT+TGG - chr7_3:82644210-82644229 Msa1130490:CDS 25.0%
!!! GATGTTTTTGAAAATTCTTG+TGG - chr7_3:82644637-82644656 Msa1130490:intron 25.0%
!! TTAAAAAAGGGTACAATAGT+TGG - chr7_3:82644991-82645010 Msa1130490:CDS 25.0%
! AGATGTTTGTGAAAAACAAT+GGG - chr7_3:82645190-82645209 Msa1130490:CDS 25.0%
!! ATTTTGTGTACTTCATTTAC+CGG + chr7_3:82645246-82645265 None:intergenic 25.0%
! AATTAAATGCTTACACTTGT+GGG + chr7_3:82645387-82645406 None:intergenic 25.0%
! AAATTAAATGCTTACACTTG+TGG + chr7_3:82645388-82645407 None:intergenic 25.0%
!! TTTTCAAATAGTGGTTATAG+CGG - chr7_3:82645476-82645495 Msa1130490:CDS 25.0%
! TTTGTGCAATCTACAATATA+TGG - chr7_3:82645605-82645624 Msa1130490:CDS 25.0%
! ACTTAAAAAATGAATTGGCT+AGG - chr7_3:82645646-82645665 Msa1130490:CDS 25.0%
! TGTATTGAAATAATGAAGTC+TGG - chr7_3:82645687-82645706 Msa1130490:CDS 25.0%
!! TTGAAGATTGTACTTTTGAA+TGG - chr7_3:82645794-82645813 Msa1130490:CDS 25.0%
! ATATGTATAGCTCAAAACAT+TGG - chr7_3:82646229-82646248 Msa1130490:five_prime_UTR 25.0%
!!! GGATTTTTAGTTCATAACAA+CGG - chr7_3:82646250-82646269 Msa1130490:five_prime_UTR 25.0%
! GAGTAAGTTATAACAAAGAA+TGG + chr7_3:82646306-82646325 None:intergenic 25.0%
!! AGGTAAAATTGGTCTCTTTT+GGG - chr7_3:82643679-82643698 Msa1130490:three_prime_UTR 30.0%
AAAAAACCTTTAAGCTAGGT+AGG - chr7_3:82643762-82643781 Msa1130490:three_prime_UTR 30.0%
!!! TTGTAGACTTTAGTTTTGAG+GGG - chr7_3:82643888-82643907 Msa1130490:three_prime_UTR 30.0%
TTGATTCTCAGTGTAAACAA+AGG - chr7_3:82643922-82643941 Msa1130490:CDS 30.0%
GAACGAGAGAAATATTGAAA+TGG + chr7_3:82644101-82644120 None:intergenic 30.0%
TTCAATATTTCTCTCGTTCT+CGG - chr7_3:82644102-82644121 Msa1130490:CDS 30.0%
CTGTTAAGTTCAAAATCCAA+AGG - chr7_3:82644170-82644189 Msa1130490:CDS 30.0%
GATACTCTACTTAAGGATTA+TGG - chr7_3:82644262-82644281 Msa1130490:CDS 30.0%
CATCAATGTCAAAACATCTT+CGG - chr7_3:82644339-82644358 Msa1130490:intron 30.0%
ATCAATGTCAAAACATCTTC+GGG - chr7_3:82644340-82644359 Msa1130490:intron 30.0%
ATGTAAAATACATCAAGCGA+AGG - chr7_3:82644398-82644417 Msa1130490:intron 30.0%
TTCTTGTGGAAGAAAATTTG+AGG - chr7_3:82644651-82644670 Msa1130490:intron 30.0%
TCCAAAAGAAAATCTCTATC+GGG + chr7_3:82644730-82644749 None:intergenic 30.0%
CTCCAAAAGAAAATCTCTAT+CGG + chr7_3:82644731-82644750 None:intergenic 30.0%
! CTGAAGCTAACTCAATTTTA+GGG + chr7_3:82644768-82644787 None:intergenic 30.0%
! ACTGAAGCTAACTCAATTTT+AGG + chr7_3:82644769-82644788 None:intergenic 30.0%
TACTTTATGCTTGATTCAAC+TGG - chr7_3:82644874-82644893 Msa1130490:CDS 30.0%
!! AAGTTATTTGGTGATGTGAA+GGG - chr7_3:82645075-82645094 Msa1130490:CDS 30.0%
CAGATGTTTGTGAAAAACAA+TGG - chr7_3:82645189-82645208 Msa1130490:CDS 30.0%
! TTTTGTGTACTTCATTTACC+GGG + chr7_3:82645245-82645264 None:intergenic 30.0%
AGTACACAAAATTAGTGTAC+TGG - chr7_3:82645254-82645273 Msa1130490:CDS 30.0%
TTGAAATAATGAAGTCTGGT+TGG - chr7_3:82645691-82645710 Msa1130490:CDS 30.0%
!!! ATTGCACTTTTGAAGTTTCA+TGG - chr7_3:82645895-82645914 Msa1130490:CDS 30.0%
!!! ACTTTTGAAGTTTCATGGAT+GGG - chr7_3:82645900-82645919 Msa1130490:CDS 30.0%
TCAAGTTTCCAATTGCAAAA+GGG + chr7_3:82646002-82646021 None:intergenic 30.0%
ATCAAGTTTCCAATTGCAAA+AGG + chr7_3:82646003-82646022 None:intergenic 30.0%
GAGAGTTGAAAATCTTATCA+AGG + chr7_3:82646152-82646171 None:intergenic 30.0%
TTGATATCTGCAATAGTAAC+AGG - chr7_3:82646186-82646205 Msa1130490:five_prime_UTR 30.0%
!!! TTTTTAGTTCATAACAACGG+AGG - chr7_3:82646253-82646272 Msa1130490:five_prime_UTR 30.0%
! AAACTCAATGATGATGACGA+TGG + chr7_3:82643522-82643541 None:intergenic 35.0%
ATTAGTGCAAAAGAGGGTAA+CGG + chr7_3:82643573-82643592 None:intergenic 35.0%
TGAGCAATTAGTGCAAAAGA+GGG + chr7_3:82643579-82643598 None:intergenic 35.0%
TTGAGCAATTAGTGCAAAAG+AGG + chr7_3:82643580-82643599 None:intergenic 35.0%
!! GAGGTAAAATTGGTCTCTTT+TGG - chr7_3:82643678-82643697 Msa1130490:three_prime_UTR 35.0%
!! GGTAAAATTGGTCTCTTTTG+GGG - chr7_3:82643680-82643699 Msa1130490:three_prime_UTR 35.0%
TTAGTGAAAATGTCATCTGC+TGG - chr7_3:82643983-82644002 Msa1130490:CDS 35.0%
AATGCATTTGGAGACAACAA+TGG + chr7_3:82644043-82644062 None:intergenic 35.0%
GATGGTAAATGGAATGCATT+TGG + chr7_3:82644055-82644074 None:intergenic 35.0%
AAGACAAGTGAGATGGTAAA+TGG + chr7_3:82644066-82644085 None:intergenic 35.0%
TCAATATTTCTCTCGTTCTC+GGG - chr7_3:82644103-82644122 Msa1130490:CDS 35.0%
! TCCTTTTCGTGTTATGGAAT+GGG - chr7_3:82644135-82644154 Msa1130490:CDS 35.0%
! AAACAGAAGTTGGTTTATGC+TGG - chr7_3:82644220-82644239 Msa1130490:CDS 35.0%
TCGAAGTGATACTCTACTTA+AGG - chr7_3:82644255-82644274 Msa1130490:CDS 35.0%
AAGGATTATGGAGTAACTGA+TGG - chr7_3:82644274-82644293 Msa1130490:CDS 35.0%
TCAATGTCAAAACATCTTCG+GGG - chr7_3:82644341-82644360 Msa1130490:intron 35.0%
! GGGGAATGAATTTTCTTTTC+AGG - chr7_3:82644360-82644379 Msa1130490:intron 35.0%
! GAAACAGTTTGATGATCTTG+AGG - chr7_3:82644435-82644454 Msa1130490:intron 35.0%
TGCATCTGTTTGTTCGAAAA+AGG - chr7_3:82644542-82644561 Msa1130490:intron 35.0%
GTTACAATGGACAACTCAAA+GGG + chr7_3:82644589-82644608 None:intergenic 35.0%
AGTTACAATGGACAACTCAA+AGG + chr7_3:82644590-82644609 None:intergenic 35.0%
! TGTGGAAGAAAATTTGAGGT+TGG - chr7_3:82644655-82644674 Msa1130490:intron 35.0%
! TCCCGATAGAGATTTTCTTT+TGG - chr7_3:82644726-82644745 Msa1130490:CDS 35.0%
AGCTTCAGTGATTCGAAATA+TGG - chr7_3:82644780-82644799 Msa1130490:CDS 35.0%
!! TAATGATAATGGAAGACCTC+GGG + chr7_3:82644959-82644978 None:intergenic 35.0%
!! CTAATGATAATGGAAGACCT+CGG + chr7_3:82644960-82644979 None:intergenic 35.0%
GGTCTTCCATTATCATTAGA+CGG - chr7_3:82644961-82644980 Msa1130490:CDS 35.0%
!! GTTTTGGATCATCCAATAAG+TGG - chr7_3:82645045-82645064 Msa1130490:CDS 35.0%
!! CAAGTTATTTGGTGATGTGA+AGG - chr7_3:82645074-82645093 Msa1130490:CDS 35.0%
! GTTTTTCACAAACATCTGCA+TGG + chr7_3:82645187-82645206 None:intergenic 35.0%
TAGTGTACTGGACATAAGAT+TGG - chr7_3:82645266-82645285 Msa1130490:CDS 35.0%
TAAGATTGGCAAATGCAGAT+AGG - chr7_3:82645280-82645299 Msa1130490:CDS 35.0%
!!! GAATATTTTGATCAGCACAG+TGG - chr7_3:82645311-82645330 Msa1130490:CDS 35.0%
AAGCAGTATCCATGATCAAT+TGG + chr7_3:82645363-82645382 None:intergenic 35.0%
GTGTTGTCAATTGCAAATGA+TGG + chr7_3:82645547-82645566 None:intergenic 35.0%
ACATAGAAGAATTGCCACAT+CGG + chr7_3:82645569-82645588 None:intergenic 35.0%
AGCAACAACTGTTAAACGAT+TGG + chr7_3:82645763-82645782 None:intergenic 35.0%
!! GTACTTTTGAATGGCTTTAC+TGG - chr7_3:82645803-82645822 Msa1130490:CDS 35.0%
CCAATAGTTTCAGCAGAATA+CGG + chr7_3:82645844-82645863 None:intergenic 35.0%
CGTATTCTGCTGAAACTATT+GGG - chr7_3:82645842-82645861 Msa1130490:CDS 35.0%
TATTGGGTACATAAAGTCAC+TGG - chr7_3:82645858-82645877 Msa1130490:CDS 35.0%
!!! CACTTTTGAAGTTTCATGGA+TGG - chr7_3:82645899-82645918 Msa1130490:CDS 35.0%
!! TCAACCATGCTTTTGAAGAA+AGG - chr7_3:82645958-82645977 Msa1130490:CDS 35.0%
!! CAACCATGCTTTTGAAGAAA+GGG - chr7_3:82645959-82645978 Msa1130490:CDS 35.0%
!! AACCATGCTTTTGAAGAAAG+GGG - chr7_3:82645960-82645979 Msa1130490:CDS 35.0%
CAAGTTTCCAATTGCAAAAG+GGG + chr7_3:82646001-82646020 None:intergenic 35.0%
AATTGGAAACTTGATGTGCA+GGG - chr7_3:82646008-82646027 Msa1130490:CDS 35.0%
!! AGATGCTGTTTCTCAAATCA+TGG - chr7_3:82646119-82646138 Msa1130490:five_prime_UTR 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr7_3:82646568-82646587 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG - chr7_3:82646333-82646352 Msa1130490:five_prime_UTR 35.0%
TTGGCACACAGATTAAGAAA+TGG - chr7_3:82646358-82646377 Msa1130490:five_prime_UTR 35.0%
TGTGAGAGAAAAGTTTGAGA+GGG - chr7_3:82646468-82646487 Msa1130490:five_prime_UTR 35.0%
AAAGTTTGAGAGGGTAAAGT+TGG - chr7_3:82646477-82646496 Msa1130490:five_prime_UTR 35.0%
TTAGTGCAAAAGAGGGTAAC+GGG + chr7_3:82643572-82643591 None:intergenic 40.0%
CATACTCCTACCTAGCTTAA+AGG + chr7_3:82643771-82643790 None:intergenic 40.0%
!! GGTTGAGCTGTTTGTTATGA+TGG - chr7_3:82643851-82643870 Msa1130490:three_prime_UTR 40.0%
TGTTAGTACTCTTAGTCCAG+TGG - chr7_3:82644006-82644025 Msa1130490:CDS 40.0%
! ACCATCTCACTTGTCTTTTG+AGG - chr7_3:82644069-82644088 Msa1130490:CDS 40.0%
TCCTCAAAAGACAAGTGAGA+TGG + chr7_3:82644073-82644092 None:intergenic 40.0%
!! GTTGACTCCTTTTCGTGTTA+TGG - chr7_3:82644129-82644148 Msa1130490:CDS 40.0%
! CTCCTTTTCGTGTTATGGAA+TGG - chr7_3:82644134-82644153 Msa1130490:CDS 40.0%
TCCCATTCCATAACACGAAA+AGG + chr7_3:82644139-82644158 None:intergenic 40.0%
!!! TTTTCTTTTCAGGTCGAACG+AGG - chr7_3:82644370-82644389 Msa1130490:intron 40.0%
CAAGCGAAGGATTGCTAAAA+AGG - chr7_3:82644411-82644430 Msa1130490:intron 40.0%
AGCAGGAACTTGTGTGTAAT+GGG - chr7_3:82644458-82644477 Msa1130490:intron 40.0%
! AACTTGTGTGTAATGGGGAA+CGG - chr7_3:82644464-82644483 Msa1130490:intron 40.0%
GTCCATTGTAACTACAGACT+TGG - chr7_3:82644597-82644616 Msa1130490:intron 40.0%
AGCCAAGTCTGTAGTTACAA+TGG + chr7_3:82644602-82644621 None:intergenic 40.0%
! GGAAGAAAATTTGAGGTTGG+TGG - chr7_3:82644658-82644677 Msa1130490:intron 40.0%
ATGGTAAACTCTGCATACGA+TGG - chr7_3:82644799-82644818 Msa1130490:CDS 40.0%
GCTAGCGAATACTATCCAAT+AGG - chr7_3:82644826-82644845 Msa1130490:CDS 40.0%
TATCCAATAGGATCTGCAGA+AGG - chr7_3:82644838-82644857 Msa1130490:CDS 40.0%
!! AATGATAATGGAAGACCTCG+GGG + chr7_3:82644958-82644977 None:intergenic 40.0%
CCTTCACCGTCTAATGATAA+TGG + chr7_3:82644970-82644989 None:intergenic 40.0%
CCATTATCATTAGACGGTGA+AGG - chr7_3:82644967-82644986 Msa1130490:CDS 40.0%
AGACGGTGAAGGCTTAAAAA+AGG - chr7_3:82644978-82644997 Msa1130490:CDS 40.0%
GACGGTGAAGGCTTAAAAAA+GGG - chr7_3:82644979-82644998 Msa1130490:CDS 40.0%
! AAGGGTACAATAGTTGGTCA+AGG - chr7_3:82644997-82645016 Msa1130490:CDS 40.0%
!! GGAAGTTGCTGCTTATGTTT+TGG - chr7_3:82645029-82645048 Msa1130490:CDS 40.0%
AAGCACTTGACCATCAATGT+TGG + chr7_3:82645117-82645136 None:intergenic 40.0%
ATGGTCAAGTGCTTGCATAA+GGG - chr7_3:82645123-82645142 Msa1130490:CDS 40.0%
CATAAGGGATTTAACCATCC+AGG - chr7_3:82645138-82645157 Msa1130490:CDS 40.0%
AATGGGAGCTGTGAAGATAT+CGG - chr7_3:82645207-82645226 Msa1130490:CDS 40.0%
!!! TATTTTGATCAGCACAGTGG+AGG - chr7_3:82645314-82645333 Msa1130490:CDS 40.0%
!! GTTCTGGTTCCAATTGATCA+TGG - chr7_3:82645351-82645370 Msa1130490:CDS 40.0%
CCGTATTCTGCTGAAACTAT+TGG - chr7_3:82645841-82645860 Msa1130490:CDS 40.0%
AGAGTTCGAGCACATTCAAT+TGG + chr7_3:82645931-82645950 None:intergenic 40.0%
AACCCCTTTCTTCAAAAGCA+TGG + chr7_3:82645965-82645984 None:intergenic 40.0%
CAATTGGAAACTTGATGTGC+AGG - chr7_3:82646007-82646026 Msa1130490:CDS 40.0%
GAACAAGGAATCTGTGATAG+AGG - chr7_3:82646038-82646057 Msa1130490:CDS 40.0%
TGAAAATCTTATCAAGGCGC+TGG + chr7_3:82646146-82646165 None:intergenic 40.0%
!! CAACGGAGGTTTGTTTTCTT+TGG - chr7_3:82646267-82646286 Msa1130490:five_prime_UTR 40.0%
!! GGAGGTTTGTTTTCTTTGGT+TGG - chr7_3:82646271-82646290 Msa1130490:five_prime_UTR 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7_3:82646328-82646347 None:intergenic 40.0%
GTGTGAGAGAAAAGTTTGAG+AGG - chr7_3:82646467-82646486 Msa1130490:five_prime_UTR 40.0%
AGCTTCCACCTTTCGATCTA+CGG - chr7_3:82643602-82643621 Msa1130490:three_prime_UTR 45.0%
AAACGACACCGTAGATCGAA+AGG + chr7_3:82643613-82643632 None:intergenic 45.0%
ATGGAAGACTCTCACACCTT+TGG + chr7_3:82644189-82644208 None:intergenic 45.0%
TATCACTTCGAGCGAGTTCA+CGG + chr7_3:82644246-82644265 None:intergenic 45.0%
!!! TTTTCAGGTCGAACGAGGTA+GGG - chr7_3:82644375-82644394 Msa1130490:intron 45.0%
! GTTTGATGATCTTGAGGAGC+AGG - chr7_3:82644441-82644460 Msa1130490:intron 45.0%
GAGCAGGAACTTGTGTGTAA+TGG - chr7_3:82644457-82644476 Msa1130490:intron 45.0%
GCAGGAACTTGTGTGTAATG+GGG - chr7_3:82644459-82644478 Msa1130490:intron 45.0%
CTGCAAGCATAATGATGCAG+TGG - chr7_3:82644519-82644538 Msa1130490:intron 45.0%
TCTCTATCGGGAAGCTTTCT+TGG + chr7_3:82644718-82644737 None:intergenic 45.0%
GTACCTTCTGCAGATCCTAT+TGG + chr7_3:82644844-82644863 None:intergenic 45.0%
! ATAGGATCTGCAGAAGGTAC+CGG - chr7_3:82644844-82644863 Msa1130490:CDS 45.0%
AAGCATAAAGTAAGCTCCCC+CGG + chr7_3:82644866-82644885 None:intergenic 45.0%
!! ATGATAATGGAAGACCTCGG+GGG + chr7_3:82644957-82644976 None:intergenic 45.0%
AACTTGCGACGTCCACTTAT+TGG + chr7_3:82645060-82645079 None:intergenic 45.0%
AGTGGACGTCGCAAGTTATT+TGG - chr7_3:82645063-82645082 Msa1130490:CDS 45.0%
TGGTGTTCCTCCAACATTGA+TGG - chr7_3:82645104-82645123 Msa1130490:CDS 45.0%
CACTTGACCATCAATGTTGG+AGG + chr7_3:82645114-82645133 None:intergenic 45.0%
GATGGTCAAGTGCTTGCATA+AGG - chr7_3:82645122-82645141 Msa1130490:CDS 45.0%
TAACCATCCAGGAGACTTGA+TGG - chr7_3:82645149-82645168 Msa1130490:CDS 45.0%
ATCTTAGCCATCAAGTCTCC+TGG + chr7_3:82645159-82645178 None:intergenic 45.0%
! GGAGACTTGATGGCTAAGAT+TGG - chr7_3:82645159-82645178 Msa1130490:CDS 45.0%
CAAATGCAGATAGGCATGCT+GGG - chr7_3:82645289-82645308 Msa1130490:CDS 45.0%
CAATTGGAACCAGAACAGAC+TGG + chr7_3:82645347-82645366 None:intergenic 45.0%
TGCAATTGACAACACCGATG+TGG - chr7_3:82645552-82645571 Msa1130490:CDS 45.0%
TAGTTTCAGCAGAATACGGC+TGG + chr7_3:82645840-82645859 None:intergenic 45.0%
TTGAAGAAAGGGGTTGAGAG+AGG - chr7_3:82645970-82645989 Msa1130490:CDS 45.0%
! GGATTGACCCCTTTTGCAAT+TGG - chr7_3:82645991-82646010 Msa1130490:CDS 45.0%
GTGCAGGGAATCATTGAACA+AGG - chr7_3:82646023-82646042 Msa1130490:CDS 45.0%
GCATTTGAGTCTGTTCTTCC+TGG - chr7_3:82646075-82646094 Msa1130490:CDS 45.0%
AATGTAGCTTCACTTGTGCC+AGG + chr7_3:82646096-82646115 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7_3:82646329-82646348 None:intergenic 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG - chr7_3:82646339-82646358 Msa1130490:five_prime_UTR 45.0%
GGAGACAACAATGGCTCAGT+GGG + chr7_3:82644034-82644053 None:intergenic 50.0%
TGGAGACAACAATGGCTCAG+TGG + chr7_3:82644035-82644054 None:intergenic 50.0%
!!! CTTTTCAGGTCGAACGAGGT+AGG - chr7_3:82644374-82644393 Msa1130490:intron 50.0%
! TGTGTGTAATGGGGAACGGT+TGG - chr7_3:82644468-82644487 Msa1130490:intron 50.0%
TACCGATGCCATTCAGAGAG+CGG - chr7_3:82644690-82644709 Msa1130490:intron 50.0%
!! TAGGATCTGCAGAAGGTACC+GGG - chr7_3:82644845-82644864 Msa1130490:CDS 50.0%
!! TAGTTGGTCAAGGAGCGTTC+AGG - chr7_3:82645007-82645026 Msa1130490:CDS 50.0%
!! AGTTGGTCAAGGAGCGTTCA+GGG - chr7_3:82645008-82645027 Msa1130490:CDS 50.0%
! GGTGATGTGAAGGGTTTTGC+TGG - chr7_3:82645084-82645103 Msa1130490:CDS 50.0%
TAGCCATCAAGTCTCCTGGA+TGG + chr7_3:82645155-82645174 None:intergenic 50.0%
AGCTGTGAAGATATCGGTCC+TGG - chr7_3:82645213-82645232 Msa1130490:CDS 50.0%
GCTGTGAAGATATCGGTCCT+GGG - chr7_3:82645214-82645233 Msa1130490:CDS 50.0%
CTGTGAAGATATCGGTCCTG+GGG - chr7_3:82645215-82645234 Msa1130490:CDS 50.0%
GCAAATGCAGATAGGCATGC+TGG - chr7_3:82645288-82645307 Msa1130490:CDS 50.0%
GGACAATGACCAGTCTGTTC+TGG - chr7_3:82645335-82645354 Msa1130490:CDS 50.0%
CGACACCGTAGATCGAAAGG+TGG + chr7_3:82643610-82643629 None:intergenic 55.0%
AATGGCTCAGTGGGATCCAC+TGG + chr7_3:82644025-82644044 None:intergenic 55.0%
! GTGTAATGGGGAACGGTTGG+AGG - chr7_3:82644471-82644490 Msa1130490:intron 55.0%
CACCGCTCTCTGAATGGCAT+CGG + chr7_3:82644695-82644714 None:intergenic 55.0%
TCTTGGCACCGCTCTCTGAA+TGG + chr7_3:82644701-82644720 None:intergenic 55.0%
!! AGGATCTGCAGAAGGTACCG+GGG - chr7_3:82644846-82644865 Msa1130490:CDS 55.0%
GCCTATCGACGAAGAGCCAA+TGG - chr7_3:82644921-82644940 Msa1130490:CDS 55.0%
!! GCCATTGGCTCTTCGTCGAT+AGG + chr7_3:82644925-82644944 None:intergenic 55.0%
CGGGGGTTATTCACAGCCAT+TGG + chr7_3:82644940-82644959 None:intergenic 55.0%
ATGGCTGTGAATAACCCCCG+AGG - chr7_3:82644940-82644959 Msa1130490:CDS 55.0%
TCATTTACCGGGAAAGCCCC+AGG + chr7_3:82645234-82645253 None:intergenic 55.0%
AGAATACGGCTGGCGAGCTT+GGG + chr7_3:82645830-82645849 None:intergenic 55.0%
!! GGATCTGCAGAAGGTACCGG+GGG - chr7_3:82644847-82644866 Msa1130490:CDS 60.0%
TATCGGTCCTGGGGCTTTCC+CGG - chr7_3:82645224-82645243 Msa1130490:CDS 60.0%
GAATACGGCTGGCGAGCTTG+GGG + chr7_3:82645829-82645848 None:intergenic 60.0%
CAGAATACGGCTGGCGAGCT+TGG + chr7_3:82645831-82645850 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82643508 82646587 82643508 ID=Msa1130490;Name=Msa1130490
chr7_3 mRNA 82643508 82646587 82643508 ID=Msa1130490-mRNA-1;Parent=Msa1130490;Name=Msa1130490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=484|1|1|1|1|1|2|408|595
chr7_3 exon 82643508 82644302 82643508 ID=Msa1130490-mRNA-1:exon:24415;Parent=Msa1130490-mRNA-1
chr7_3 exon 82644703 82646587 82644703 ID=Msa1130490-mRNA-1:exon:24414;Parent=Msa1130490-mRNA-1
chr7_3 five_prime_UTR 82646104 82646587 82646104 ID=Msa1130490-mRNA-1:five_prime_utr;Parent=Msa1130490-mRNA-1
chr7_3 CDS 82644703 82646103 82644703 ID=Msa1130490-mRNA-1:cds;Parent=Msa1130490-mRNA-1
chr7_3 CDS 82643916 82644302 82643916 ID=Msa1130490-mRNA-1:cds;Parent=Msa1130490-mRNA-1
chr7_3 three_prime_UTR 82643508 82643915 82643508 ID=Msa1130490-mRNA-1:three_prime_utr;Parent=Msa1130490-mRNA-1
Gene Sequence

>Msa1130490

ATGTCATCTGCTGGTGTTAGTACTCTTAGTCCAGTGGATCCCACTGAGCCATTGTTGTCTCCAAATGCATTCCATTTACCATCTCACTTGTCTTTTGAGGACAAATCCATTTCAATATTTCTCTCGTTCTCGGGTTCGTTGACTCCTTTTCGTGTTATGGAATGGGATACTATTGAGTCTGTTAAGTTCAAAATCCAAAGGTGTGAGAGTCTTCCATTTTTAACTAACAAACAGAAGTTGGTTTATGCTGGCCGTGAACTCGCTCGAAGTGATACTCTACTTAAGGATTATGGAGTAACTGATGGAAATGTTTTGCATTTGATAATCAAATTATCAGATCTTCAACTCATCAATGTCAAAACATCTTCGGGGAATGAATTTTCTTTTCAGGTCGAACGAGGTAGGGATGTAAAATACATCAAGCGAAGGATTGCTAAAAAGGAGAAACAGTTTGATGATCTTGAGGAGCAGGAACTTGTGTGTAATGGGGAACGGTTGGAGGATCAGAAGCTTATTGATGACATCTGCTGCAAGCATAATGATGCAGTGGTGCATCTGTTTGTTCGAAAAAGGAATGCAAAAGTTCATAGAAGACCCTTTGAGTTGTCCATTGTAACTACAGACTTGGCTGATACGAAAACTGACGATGTTTTTGAAAATTCTTGTGGAAGAAAATTTGAGGTTGGTGGTGTAGAAGATACCGATGCCATTCAGAGAGCGGTGCCAAGAAAGCTTCCCGATAGAGATTTTCTTTTGGAGCCAATTATAGTTAACCCTAAAATTGAGTTAGCTTCAGTGATTCGAAATATGGTAAACTCTGCATACGATGGACTAGCTAGCGAATACTATCCAATAGGATCTGCAGAAGGTACCGGGGGAGCTTACTTTATGCTTGATTCAACTGGTCAGAAGTATGTGTCTGTTTTTAAGCCTATCGACGAAGAGCCAATGGCTGTGAATAACCCCCGAGGTCTTCCATTATCATTAGACGGTGAAGGCTTAAAAAAGGGTACAATAGTTGGTCAAGGAGCGTTCAGGGAAGTTGCTGCTTATGTTTTGGATCATCCAATAAGTGGACGTCGCAAGTTATTTGGTGATGTGAAGGGTTTTGCTGGTGTTCCTCCAACATTGATGGTCAAGTGCTTGCATAAGGGATTTAACCATCCAGGAGACTTGATGGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAACAATGGGAGCTGTGAAGATATCGGTCCTGGGGCTTTCCCGGTAAATGAAGTACACAAAATTAGTGTACTGGACATAAGATTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGTGGAGGACAATGACCAGTCTGTTCTGGTTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACTTTTGAATGGCTTTACTGGCCCCAAGCTCGCCAGCCGTATTCTGCTGAAACTATTGGGTACATAAAGTCACTGGATGCTGAAGAAGATATTGCACTTTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCTCGAACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACCCCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAGGAATCTGTGATAGAGGAAATAGTTGAAGAAGCATTTGAGTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTAGATGCTGTTTCTCAAATCATGGACCAGCGCCTTGATAAGATTTTCAACTCTCTTTTTTAA
Protein sequence

>Msa1130490

MSSAGVSTLSPVDPTEPLLSPNAFHLPSHLSFEDKSISIFLSFSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGNEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAVVHLFVRKRNAKVHRRPFELSIVTTDLADTKTDDVFENSCGRKFEVGGVEDTDAIQRAVPRKLPDRDFLLEPIIVNPKIELASVIRNMVNSAYDGLASEYYPIGSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTIVGQGAFREVAAYVLDHPISGRRKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLMAKIGSMQMFVKNNGSCEDIGPGAFPVNEVHKISVLDIRLANADRHAGNILISTVEDNDQSVLVPIDHGYCLPTSFEDCTFEWLYWPQARQPYSAETIGYIKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEAFESVLPGTSEATLLDAVSQIMDQRLDKIFNSLF*