Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342930 | XP_013456461.1 | 98.242 | 512 | 9 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1043 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342930 | sp|Q38967|AAP2_ARATH | 71.642 | 469 | 125 | 3 | 45 | 512 | 32 | 493 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342930 | A0A072ULC2 | 98.242 | 512 | 9 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1043 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0687000 | Msa1342930 | 0.914138 | 2.724975e-84 | -8.615850e-47 |
| Msa1241820 | Msa1342930 | 0.811309 | 7.465412e-51 | -8.615850e-47 |
| Msa1282920 | Msa1342930 | 0.812740 | 3.641052e-51 | -8.615850e-47 |
| Msa1305740 | Msa1342930 | 0.915827 | 3.703551e-85 | -8.615850e-47 |
| Msa1342930 | Msa1382720 | 0.804002 | 2.662229e-49 | -8.615850e-47 |
| Msa1342930 | Msa1388910 | 0.808205 | 3.471826e-50 | -8.615850e-47 |
| Msa0538270 | Msa1342930 | 0.804646 | 1.954503e-49 | -8.615850e-47 |
| Msa0551950 | Msa1342930 | 0.831079 | 2.045866e-55 | -8.615850e-47 |
| Msa0866790 | Msa1342930 | 0.833522 | 5.080413e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342930 | MtrunA17_Chr4g0037201 | 98.242 | 512 | 9 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1043 |
| Msa1342930 | MtrunA17_Chr8g0384661 | 66.667 | 489 | 152 | 4 | 24 | 512 | 17 | 494 | 0.0 | 682 |
| Msa1342930 | MtrunA17_Chr1g0159761 | 67.155 | 478 | 150 | 2 | 36 | 512 | 4 | 475 | 0.0 | 671 |
| Msa1342930 | MtrunA17_Chr3g0125081 | 65.000 | 480 | 159 | 2 | 34 | 512 | 8 | 479 | 0.0 | 671 |
| Msa1342930 | MtrunA17_Chr3g0125091 | 64.780 | 477 | 158 | 3 | 38 | 512 | 12 | 480 | 0.0 | 660 |
| Msa1342930 | MtrunA17_Chr3g0125101 | 64.151 | 477 | 161 | 3 | 38 | 512 | 12 | 480 | 0.0 | 653 |
| Msa1342930 | MtrunA17_Chr3g0130651 | 64.211 | 475 | 158 | 4 | 34 | 508 | 2 | 464 | 0.0 | 612 |
| Msa1342930 | MtrunA17_Chr3g0130641 | 60.768 | 469 | 172 | 3 | 44 | 512 | 21 | 477 | 0.0 | 607 |
| Msa1342930 | MtrunA17_Chr3g0140761 | 58.009 | 462 | 188 | 2 | 49 | 509 | 23 | 479 | 0.0 | 582 |
| Msa1342930 | MtrunA17_Chr1g0146491 | 57.143 | 462 | 192 | 2 | 49 | 509 | 13 | 469 | 0.0 | 575 |
| Msa1342930 | MtrunA17_Chr1g0206871 | 51.404 | 463 | 210 | 3 | 58 | 511 | 14 | 470 | 0.0 | 529 |
| Msa1342930 | MtrunA17_Chr3g0103231 | 50.333 | 451 | 216 | 1 | 49 | 499 | 13 | 455 | 2.07e-176 | 504 |
| Msa1342930 | MtrunA17_Chr3g0103221 | 50.897 | 446 | 211 | 1 | 56 | 501 | 27 | 464 | 3.10e-173 | 496 |
| Msa1342930 | MtrunA17_Chr3g0103211 | 48.941 | 472 | 223 | 4 | 29 | 499 | 1 | 455 | 2.42e-172 | 494 |
| Msa1342930 | MtrunA17_Chr1g0206821 | 46.899 | 516 | 218 | 3 | 52 | 511 | 15 | 530 | 4.65e-167 | 483 |
| Msa1342930 | MtrunA17_Chr3g0140531 | 49.254 | 469 | 232 | 2 | 40 | 508 | 5 | 467 | 1.41e-164 | 474 |
| Msa1342930 | MtrunA17_Chr5g0447221 | 45.895 | 475 | 233 | 5 | 29 | 499 | 7 | 461 | 1.09e-160 | 464 |
| Msa1342930 | MtrunA17_Chr1g0146411 | 48.125 | 480 | 235 | 5 | 30 | 509 | 5 | 470 | 1.79e-159 | 461 |
| Msa1342930 | MtrunA17_Chr3g0103271 | 49.777 | 448 | 216 | 2 | 53 | 499 | 21 | 460 | 1.54e-156 | 454 |
| Msa1342930 | MtrunA17_Chr3g0140541 | 48.211 | 475 | 228 | 4 | 38 | 508 | 6 | 466 | 1.51e-150 | 439 |
| Msa1342930 | MtrunA17_Chr1g0146331 | 45.077 | 457 | 242 | 4 | 53 | 508 | 14 | 462 | 4.89e-146 | 427 |
| Msa1342930 | MtrunA17_Chr2g0293331 | 46.070 | 458 | 237 | 4 | 52 | 508 | 5 | 453 | 6.59e-146 | 426 |
| Msa1342930 | MtrunA17_Chr1g0206851 | 51.482 | 371 | 168 | 3 | 140 | 509 | 19 | 378 | 6.53e-145 | 421 |
| Msa1342930 | MtrunA17_Chr1g0146391 | 44.420 | 457 | 246 | 3 | 53 | 509 | 6 | 454 | 1.83e-144 | 422 |
| Msa1342930 | MtrunA17_Chr5g0447231 | 44.944 | 445 | 236 | 2 | 58 | 501 | 24 | 460 | 5.44e-140 | 411 |
| Msa1342930 | MtrunA17_Chr1g0206831 | 49.708 | 342 | 160 | 3 | 164 | 504 | 6 | 336 | 3.88e-127 | 374 |
| Msa1342930 | MtrunA17_Chr5g0402151 | 62.126 | 301 | 75 | 4 | 62 | 362 | 3 | 264 | 6.82e-123 | 361 |
| Msa1342930 | MtrunA17_Chr3g0103251 | 46.518 | 359 | 155 | 2 | 172 | 501 | 20 | 370 | 4.80e-121 | 360 |
| Msa1342930 | MtrunA17_Chr3g0130671 | 62.946 | 224 | 77 | 1 | 49 | 272 | 29 | 246 | 7.98e-98 | 297 |
| Msa1342930 | MtrunA17_Chr3g0130661 | 59.563 | 183 | 71 | 1 | 329 | 511 | 1 | 180 | 3.83e-77 | 240 |
| Msa1342930 | MtrunA17_Chr6g0458931 | 29.352 | 494 | 278 | 18 | 38 | 506 | 5 | 452 | 4.54e-51 | 180 |
| Msa1342930 | MtrunA17_Chr2g0331721 | 28.081 | 495 | 310 | 12 | 17 | 505 | 3 | 457 | 2.64e-46 | 167 |
| Msa1342930 | MtrunA17_Chr8g0376991 | 28.384 | 458 | 277 | 12 | 59 | 509 | 23 | 436 | 3.14e-46 | 167 |
| Msa1342930 | MtrunA17_Chr6g0458921 | 30.617 | 454 | 265 | 14 | 60 | 506 | 15 | 425 | 2.02e-43 | 159 |
| Msa1342930 | MtrunA17_Chr4g0057851 | 28.475 | 446 | 264 | 14 | 70 | 506 | 21 | 420 | 2.83e-43 | 159 |
| Msa1342930 | MtrunA17_Chr6g0459031 | 30.396 | 454 | 266 | 14 | 60 | 506 | 15 | 425 | 6.56e-43 | 157 |
| Msa1342930 | MtrunA17_Chr1g0184721 | 27.140 | 479 | 296 | 14 | 36 | 508 | 6 | 437 | 4.18e-40 | 150 |
| Msa1342930 | MtrunA17_Chr5g0422741 | 29.202 | 476 | 275 | 17 | 40 | 505 | 12 | 435 | 6.15e-38 | 144 |
| Msa1342930 | MtrunA17_Chr2g0328081 | 28.033 | 478 | 281 | 13 | 38 | 506 | 2 | 425 | 6.81e-38 | 144 |
| Msa1342930 | MtrunA17_Chr6g0459001 | 29.046 | 482 | 278 | 16 | 59 | 506 | 22 | 473 | 2.09e-36 | 140 |
| Msa1342930 | MtrunA17_Chr6g0459011 | 28.111 | 434 | 267 | 9 | 75 | 504 | 1 | 393 | 2.64e-36 | 139 |
| Msa1342930 | MtrunA17_Chr3g0103261 | 48.872 | 133 | 67 | 1 | 49 | 181 | 13 | 144 | 4.52e-36 | 131 |
| Msa1342930 | MtrunA17_Chr6g0459021 | 26.775 | 493 | 299 | 15 | 26 | 506 | 2 | 444 | 4.84e-36 | 139 |
| Msa1342930 | MtrunA17_Chr3g0077651 | 28.761 | 452 | 279 | 10 | 60 | 506 | 53 | 466 | 5.51e-36 | 139 |
| Msa1342930 | MtrunA17_Chr7g0230011 | 27.632 | 456 | 275 | 12 | 60 | 506 | 31 | 440 | 7.60e-36 | 138 |
| Msa1342930 | MtrunA17_Chr3g0122921 | 26.626 | 492 | 270 | 18 | 38 | 508 | 6 | 427 | 1.36e-35 | 137 |
| Msa1342930 | MtrunA17_Chr1g0206861 | 61.224 | 98 | 38 | 0 | 48 | 145 | 10 | 107 | 1.99e-33 | 124 |
| Msa1342930 | MtrunA17_Chr1g0206841 | 59.406 | 101 | 38 | 1 | 40 | 140 | 5 | 102 | 3.63e-33 | 121 |
| Msa1342930 | MtrunA17_Chr1g0198531 | 26.096 | 479 | 297 | 14 | 33 | 506 | 8 | 434 | 3.11e-32 | 128 |
| Msa1342930 | MtrunA17_Chr1g0198541 | 27.097 | 465 | 284 | 15 | 50 | 506 | 17 | 434 | 5.98e-32 | 127 |
| Msa1342930 | MtrunA17_Chr1g0146351 | 56.863 | 102 | 43 | 1 | 70 | 171 | 14 | 114 | 2.87e-30 | 114 |
| Msa1342930 | MtrunA17_Chr3g0143701 | 25.055 | 451 | 291 | 14 | 60 | 499 | 85 | 499 | 4.52e-30 | 123 |
| Msa1342930 | MtrunA17_Chr4g0027241 | 25.610 | 492 | 301 | 17 | 36 | 508 | 14 | 459 | 4.70e-30 | 122 |
| Msa1342930 | MtrunA17_Chr1g0198081 | 26.124 | 467 | 289 | 16 | 58 | 511 | 58 | 481 | 1.81e-28 | 118 |
| Msa1342930 | MtrunA17_Chr8g0387941 | 24.736 | 473 | 302 | 17 | 53 | 511 | 18 | 450 | 3.88e-28 | 117 |
| Msa1342930 | MtrunA17_Chr4g0038711 | 24.729 | 461 | 304 | 13 | 60 | 507 | 71 | 501 | 1.12e-25 | 110 |
| Msa1342930 | MtrunA17_Chr5g0406351 | 25.054 | 459 | 286 | 17 | 59 | 501 | 107 | 523 | 1.95e-23 | 103 |
| Msa1342930 | MtrunA17_Chr5g0436281 | 25.175 | 429 | 259 | 14 | 90 | 508 | 4 | 380 | 6.01e-21 | 94.7 |
| Msa1342930 | MtrunA17_Chr1g0159751 | 69.231 | 52 | 16 | 0 | 308 | 359 | 1 | 52 | 1.40e-17 | 77.4 |
| Msa1342930 | MtrunA17_Chr3g0112971 | 25.971 | 412 | 247 | 15 | 105 | 508 | 72 | 433 | 2.30e-16 | 81.3 |
| Msa1342930 | MtrunA17_Chr2g0281341 | 23.810 | 462 | 302 | 16 | 59 | 507 | 95 | 519 | 2.70e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342930 | AT5G09220.1 | 71.642 | 469 | 125 | 3 | 45 | 512 | 32 | 493 | 0.0 | 721 |
| Msa1342930 | AT5G63850.1 | 70.905 | 464 | 128 | 2 | 50 | 512 | 9 | 466 | 0.0 | 700 |
| Msa1342930 | AT1G77380.1 | 68.319 | 464 | 141 | 1 | 49 | 512 | 19 | 476 | 0.0 | 665 |
| Msa1342930 | AT1G44100.1 | 62.815 | 476 | 176 | 1 | 38 | 512 | 5 | 480 | 0.0 | 648 |
| Msa1342930 | AT1G10010.1 | 56.616 | 461 | 195 | 1 | 50 | 510 | 18 | 473 | 0.0 | 570 |
| Msa1342930 | AT1G10010.2 | 56.616 | 461 | 195 | 1 | 50 | 510 | 19 | 474 | 0.0 | 570 |
| Msa1342930 | AT5G49630.1 | 56.344 | 465 | 196 | 3 | 47 | 509 | 20 | 479 | 0.0 | 554 |
| Msa1342930 | AT1G58360.1 | 51.860 | 484 | 228 | 1 | 27 | 510 | 4 | 482 | 0.0 | 552 |
| Msa1342930 | AT5G23810.1 | 48.620 | 471 | 227 | 5 | 34 | 499 | 2 | 462 | 1.85e-146 | 428 |
| Msa1342930 | AT5G23810.2 | 50.432 | 347 | 159 | 4 | 34 | 377 | 2 | 338 | 1.20e-108 | 328 |
| Msa1342930 | AT5G23810.4 | 46.792 | 265 | 128 | 4 | 34 | 295 | 2 | 256 | 8.95e-71 | 227 |
| Msa1342930 | AT5G23810.5 | 46.919 | 211 | 107 | 3 | 34 | 241 | 2 | 210 | 4.55e-56 | 187 |
| Msa1342930 | AT5G23810.3 | 46.919 | 211 | 107 | 3 | 34 | 241 | 2 | 210 | 4.55e-56 | 187 |
| Msa1342930 | AT1G24400.1 | 27.729 | 458 | 276 | 9 | 60 | 508 | 29 | 440 | 1.67e-44 | 162 |
| Msa1342930 | AT1G48640.1 | 26.653 | 484 | 306 | 12 | 33 | 509 | 12 | 453 | 7.89e-43 | 158 |
| Msa1342930 | AT5G40780.1 | 26.593 | 455 | 281 | 10 | 60 | 506 | 34 | 443 | 9.31e-43 | 158 |
| Msa1342930 | AT3G01760.1 | 28.285 | 449 | 278 | 11 | 60 | 503 | 32 | 441 | 4.26e-40 | 151 |
| Msa1342930 | AT5G40780.3 | 26.818 | 440 | 269 | 11 | 75 | 506 | 1 | 395 | 1.20e-38 | 145 |
| Msa1342930 | AT5G40780.2 | 26.818 | 440 | 269 | 11 | 75 | 506 | 1 | 395 | 1.20e-38 | 145 |
| Msa1342930 | AT1G67640.1 | 27.692 | 455 | 280 | 11 | 60 | 508 | 29 | 440 | 4.33e-38 | 145 |
| Msa1342930 | AT1G61270.1 | 26.991 | 452 | 279 | 10 | 60 | 503 | 34 | 442 | 6.88e-38 | 145 |
| Msa1342930 | AT1G71680.1 | 26.585 | 489 | 291 | 11 | 38 | 508 | 9 | 447 | 6.70e-37 | 142 |
| Msa1342930 | AT1G71680.2 | 27.945 | 365 | 212 | 10 | 38 | 384 | 9 | 340 | 6.49e-32 | 126 |
| Msa1342930 | AT1G25530.1 | 28.477 | 453 | 277 | 10 | 59 | 506 | 27 | 437 | 6.55e-32 | 127 |
| Msa1342930 | AT1G08230.2 | 27.527 | 465 | 281 | 15 | 58 | 508 | 26 | 448 | 2.25e-28 | 117 |
| Msa1342930 | AT5G41800.1 | 24.255 | 470 | 295 | 16 | 58 | 511 | 25 | 449 | 2.29e-24 | 106 |
| Msa1342930 | AT2G36590.1 | 24.719 | 445 | 272 | 17 | 29 | 465 | 1 | 390 | 3.28e-19 | 90.5 |
| Msa1342930 | AT1G08230.4 | 30.800 | 250 | 140 | 9 | 270 | 508 | 102 | 329 | 2.03e-18 | 87.0 |
| Msa1342930 | AT1G08230.6 | 30.800 | 250 | 140 | 9 | 270 | 508 | 102 | 329 | 2.03e-18 | 87.0 |
| Msa1342930 | AT1G08230.5 | 30.800 | 250 | 140 | 9 | 270 | 508 | 102 | 329 | 2.03e-18 | 87.0 |
| Msa1342930 | AT1G08230.3 | 30.800 | 250 | 140 | 9 | 270 | 508 | 121 | 348 | 3.40e-18 | 86.7 |
| Msa1342930 | AT3G55740.1 | 25.000 | 492 | 296 | 22 | 30 | 508 | 5 | 436 | 6.61e-18 | 86.7 |
| Msa1342930 | AT2G39890.2 | 24.283 | 453 | 285 | 17 | 65 | 508 | 36 | 439 | 7.57e-18 | 86.3 |
| Msa1342930 | AT2G39890.1 | 24.283 | 453 | 285 | 17 | 65 | 508 | 36 | 439 | 7.57e-18 | 86.3 |
| Msa1342930 | AT3G55740.2 | 25.641 | 429 | 257 | 18 | 90 | 508 | 4 | 380 | 1.52e-17 | 85.1 |
| Msa1342930 | AT3G55740.3 | 25.641 | 429 | 257 | 18 | 90 | 508 | 4 | 380 | 1.52e-17 | 85.1 |
| Msa1342930 | AT2G39890.3 | 23.944 | 426 | 268 | 15 | 90 | 508 | 4 | 380 | 1.76e-17 | 84.7 |
| Msa1342930 | AT4G35180.1 | 23.992 | 471 | 293 | 12 | 32 | 482 | 24 | 449 | 1.04e-16 | 83.2 |
| Msa1342930 | AT1G47670.1 | 24.190 | 463 | 299 | 16 | 59 | 507 | 93 | 517 | 3.08e-13 | 72.4 |
| Msa1342930 | AT4G35180.2 | 25.392 | 319 | 202 | 7 | 32 | 338 | 24 | 318 | 7.52e-13 | 70.1 |
| Msa1342930 | AT2G36590.2 | 25.568 | 352 | 214 | 15 | 29 | 372 | 1 | 312 | 2.80e-11 | 65.5 |
Find 117 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTCTCAGTTTGGATTT+TGG | 0.149290 | tig0006056:+168373 | None:intergenic |
| TTGAATTTCAATGAGGATAA+TGG | 0.220587 | tig0006056:+166881 | None:intergenic |
| TTCAGAAGGAGGAGACTTTA+AGG | 0.234915 | tig0006056:+166764 | None:intergenic |
| CTGGAGTGCTTTCATTGGCT+TGG | 0.244355 | tig0006056:-168113 | Msa1342930:CDS |
| TTGGATTCTATAACCCTTAT+TGG | 0.244673 | tig0006056:-166617 | Msa1342930:CDS |
| ATCCATTGCTGGAGTGGTTT+TGG | 0.246912 | tig0006056:-165767 | Msa1342930:CDS |
| GTTGGAATACTTGGAGCTTT+TGG | 0.258162 | tig0006056:-165928 | Msa1342930:CDS |
| GGACATGATAGCTGCAACTA+TGG | 0.263574 | tig0006056:+167173 | None:intergenic |
| CTAGGAAGTGTTCTACTTCT+TGG | 0.264874 | tig0006056:+168550 | None:intergenic |
| GCTGTCACAAAATTATTCTT+TGG | 0.273989 | tig0006056:+166078 | None:intergenic |
| ATTGGGTAATAAACTGTTAA+AGG | 0.276366 | tig0006056:+165898 | None:intergenic |
| ACTTATTCTGCAGTTGGATT+AGG | 0.281638 | tig0006056:-167147 | Msa1342930:CDS |
| TCAATTTCTTCCGCCTAGTT+TGG | 0.288867 | tig0006056:-166014 | Msa1342930:CDS |
| TGTGAAATATACATGTCTAT+TGG | 0.291402 | tig0006056:+165880 | None:intergenic |
| CTCAGCTTGGTTGGGCTGTT+GGG | 0.294190 | tig0006056:-168083 | Msa1342930:CDS |
| GTGAAATATACATGTCTATT+GGG | 0.296365 | tig0006056:+165881 | None:intergenic |
| TTGATCAAAGTCTGGGATTT+GGG | 0.299517 | tig0006056:+167209 | None:intergenic |
| AGAACAGATGACTCTGTTAA+TGG | 0.303497 | tig0006056:-167994 | Msa1342930:CDS |
| GTTGTATTGCAGGAACATTT+TGG | 0.320701 | tig0006056:-168173 | Msa1342930:intron |
| CTTGATCAAAGTCTGGGATT+TGG | 0.326018 | tig0006056:+167208 | None:intergenic |
| TGTTTCTTAGGGCAATTAAA+AGG | 0.327651 | tig0006056:-167326 | Msa1342930:intron |
| TGGAGTGCTTTCATTGGCTT+GGG | 0.340533 | tig0006056:-168112 | Msa1342930:CDS |
| GCAATGTCAAGAAGCCAATA+AGG | 0.342161 | tig0006056:+166603 | None:intergenic |
| GCAATTGTTGTGCACTTAGT+TGG | 0.345019 | tig0006056:-166573 | Msa1342930:CDS |
| TGAACACAAGACCATGAAAA+AGG | 0.355176 | tig0006056:-166745 | Msa1342930:CDS |
| TCACTGGCACACAGAAAATA+TGG | 0.358100 | tig0006056:-166950 | Msa1342930:CDS |
| CAATTGTTGTGCACTTAGTT+GGG | 0.358372 | tig0006056:-166572 | Msa1342930:CDS |
| GATGCAGTAAAGTCTATCTT+AGG | 0.361901 | tig0006056:-167949 | Msa1342930:intron |
| CATATCATCACTGCTGTGAT+AGG | 0.370033 | tig0006056:-168138 | Msa1342930:CDS |
| CTGTGTGCCAGTGACTGTTC+CGG | 0.370439 | tig0006056:+166959 | None:intergenic |
| TATGCTTGAACCTGCAACTT+TGG | 0.370453 | tig0006056:+167113 | None:intergenic |
| GGCAATAGCTCAGCTTGGTT+GGG | 0.371439 | tig0006056:-168091 | Msa1342930:CDS |
| TCCCAGACTTTGATCAAGTA+TGG | 0.373754 | tig0006056:-167203 | Msa1342930:CDS |
| GGGCAATAGCTCAGCTTGGT+TGG | 0.375371 | tig0006056:-168092 | Msa1342930:CDS |
| TATATTTCACAAAAGAAGAT+TGG | 0.376531 | tig0006056:-165868 | Msa1342930:CDS |
| GCTGCTGTTGGATCCATTGC+TGG | 0.376547 | tig0006056:-165778 | Msa1342930:CDS |
| CACCATACTTGATCAAAGTC+TGG | 0.378867 | tig0006056:+167201 | None:intergenic |
| AATGATGTGGTTGGAATACT+TGG | 0.380128 | tig0006056:-165937 | Msa1342930:CDS |
| CTTGCACTTCAGATGCTTAG+TGG | 0.381924 | tig0006056:-165826 | Msa1342930:CDS |
| CTAGGCATCGCCAAAGTTGC+AGG | 0.384071 | tig0006056:-167123 | Msa1342930:intron |
| AGGCTCTGGAGTGCTTTCAT+TGG | 0.387217 | tig0006056:-168118 | Msa1342930:CDS |
| GTCGAAGCACTTGGAATAGT+TGG | 0.391776 | tig0006056:+168334 | None:intergenic |
| GCTCAGCTTGGTTGGGCTGT+TGG | 0.394818 | tig0006056:-168084 | Msa1342930:CDS |
| TCCTTCACTTATTCTGCAGT+TGG | 0.394941 | tig0006056:-167153 | Msa1342930:CDS |
| ATTCAGTATGTGAATCTGTT+TGG | 0.402010 | tig0006056:-167810 | Msa1342930:CDS |
| AGACTGATTCAGTCTCAGTT+TGG | 0.403667 | tig0006056:+168366 | None:intergenic |
| AAACCAGTCAAAAGATTTCC+AGG | 0.403962 | tig0006056:+166639 | None:intergenic |
| GGCATGGGTTATGCAGCCTT+TGG | 0.414032 | tig0006056:-166672 | Msa1342930:CDS |
| AATCTGTTTGGAATTGCAAT+TGG | 0.419799 | tig0006056:-167798 | Msa1342930:CDS |
| CTTGGAATAGTTGGGCTCAA+TGG | 0.435400 | tig0006056:+168343 | None:intergenic |
| AAAATTTCAAGGAAGCTTGA+TGG | 0.436014 | tig0006056:-167009 | Msa1342930:CDS |
| TCTGCAGTTGGATTAGGTCT+AGG | 0.439412 | tig0006056:-167141 | Msa1342930:CDS |
| CTAGGCGGAAGAAATTGATT+TGG | 0.441852 | tig0006056:+166019 | None:intergenic |
| GTGCACAACAATTGCAAAGT+TGG | 0.444851 | tig0006056:+166581 | None:intergenic |
| ATTTCAATATTAGCTGCTGT+TGG | 0.447054 | tig0006056:-165790 | Msa1342930:CDS |
| CAGCTAATATTGAAATGATC+AGG | 0.448358 | tig0006056:+165797 | None:intergenic |
| ATCACTGCTGTGATAGGCTC+TGG | 0.451320 | tig0006056:-168132 | Msa1342930:CDS |
| TTCAATGAGGATAATGGAAA+AGG | 0.458924 | tig0006056:+166887 | None:intergenic |
| GCGAAGAGAATCATGACAAC+AGG | 0.458993 | tig0006056:+168060 | None:intergenic |
| TGTATCCATTGCTTGACATA+TGG | 0.461416 | tig0006056:+167265 | None:intergenic |
| TTCATGGTCTTGTGTTCAGA+AGG | 0.465842 | tig0006056:+166750 | None:intergenic |
| ATAGAAAATGGAAAATTTCA+AGG | 0.466520 | tig0006056:-167020 | Msa1342930:intron |
| TATTTACTATGTGGTGGCAT+GGG | 0.466716 | tig0006056:-166687 | Msa1342930:CDS |
| CTATTTACTATGTGGTGGCA+TGG | 0.467141 | tig0006056:-166688 | Msa1342930:CDS |
| GACTGTTCCGGCTTGTGCCA+CGG | 0.477813 | tig0006056:+166971 | None:intergenic |
| GACGGTCGCCTCAAGAGAAC+AGG | 0.477944 | tig0006056:-168308 | Msa1342930:intron |
| GCACTTAGTTGGGGCATACC+AGG | 0.483844 | tig0006056:-166562 | Msa1342930:intron |
| GCCTTTGGAGATCATGTACC+TGG | 0.484040 | tig0006056:-166657 | Msa1342930:CDS |
| GCACAAGCCGGAACAGTCAC+TGG | 0.490586 | tig0006056:-166966 | Msa1342930:CDS |
| AAATTTCAAGGAAGCTTGAT+GGG | 0.493759 | tig0006056:-167008 | Msa1342930:CDS |
| TCGAAGCACTTGGAATAGTT+GGG | 0.495734 | tig0006056:+168335 | None:intergenic |
| TGTTGGATCCATTGCTGGAG+TGG | 0.501226 | tig0006056:-165773 | Msa1342930:CDS |
| CAATGTCAAGAAGCCAATAA+GGG | 0.505504 | tig0006056:+166604 | None:intergenic |
| GACTAATTTCTATGTCTAAG+AGG | 0.507831 | tig0006056:-165533 | Msa1342930:three_prime_UTR |
| GCTTGGGCAATAGCTCAGCT+TGG | 0.509406 | tig0006056:-168096 | Msa1342930:CDS |
| CACAAAAGAAGATTGGAAGA+TGG | 0.516110 | tig0006056:-165861 | Msa1342930:CDS |
| TGTGCCACTTTGAAGTTACA+AGG | 0.522675 | tig0006056:-165555 | Msa1342930:three_prime_UTR |
| TACACGCCAATGCAAGGAAT+AGG | 0.527950 | tig0006056:+166042 | None:intergenic |
| ACCGTCGTCGTCGAAGCACT+TGG | 0.529696 | tig0006056:+168325 | None:intergenic |
| GGAGGAGTTTACAAGCTCTA+GGG | 0.530559 | tig0006056:-166929 | Msa1342930:CDS |
| GAAATACCTATTCCTTGCAT+TGG | 0.530903 | tig0006056:-166048 | Msa1342930:CDS |
| TGGAGGAGTTTACAAGCTCT+AGG | 0.533735 | tig0006056:-166930 | Msa1342930:CDS |
| ATCCAAAACCACTCCAGCAA+TGG | 0.538718 | tig0006056:+165765 | None:intergenic |
| AGCTTGATGGGAATTAGCAT+TGG | 0.538971 | tig0006056:-166996 | Msa1342930:CDS |
| AGAAGTGGAGTGCACGTAAG+TGG | 0.542626 | tig0006056:-166101 | Msa1342930:CDS |
| ATTGGTGCCGTGGCACAAGC+CGG | 0.543191 | tig0006056:-166978 | Msa1342930:CDS |
| TTTCAGACACTACTTAGAAG+TGG | 0.545928 | tig0006056:-168405 | Msa1342930:CDS |
| TTTACAAGCTCTAGGGGCAA+TGG | 0.553880 | tig0006056:-166922 | Msa1342930:CDS |
| GAGGATAATGGAAAAGGAGT+AGG | 0.556091 | tig0006056:+166893 | None:intergenic |
| ACAGTGTTCTATTTACTATG+TGG | 0.563522 | tig0006056:-166696 | Msa1342930:CDS |
| ATGGTCTTGTGTTCAGAAGG+AGG | 0.564496 | tig0006056:+166753 | None:intergenic |
| ATTTGGTACACGCCAATGCA+AGG | 0.565836 | tig0006056:+166036 | None:intergenic |
| GTCTTTGCTAAAAGTGAATG+TGG | 0.568057 | tig0006056:+168620 | None:intergenic |
| ATGTTGAACCTGTTCTCTTG+AGG | 0.568328 | tig0006056:+168300 | None:intergenic |
| ACCATACTTGATCAAAGTCT+GGG | 0.568824 | tig0006056:+167202 | None:intergenic |
| AATTGTTGTGCACTTAGTTG+GGG | 0.569503 | tig0006056:-166571 | Msa1342930:CDS |
| CCATGCCATATGTCAAGCAA+TGG | 0.571445 | tig0006056:-167270 | Msa1342930:CDS |
| GGGAATTAGCATTGGTGCCG+TGG | 0.572379 | tig0006056:-166988 | Msa1342930:CDS |
| AATTGTTATCATGAGAGTCA+TGG | 0.575521 | tig0006056:-167300 | Msa1342930:CDS |
| ACTCCATGTTGAAATCTGCT+AGG | 0.577936 | tig0006056:+168532 | None:intergenic |
| CCATTGCTTGACATATGGCA+TGG | 0.582704 | tig0006056:+167270 | None:intergenic |
| TAATTACTTGAATTTCAATG+AGG | 0.589061 | tig0006056:+166874 | None:intergenic |
| GTGTTCTATTTACTATGTGG+TGG | 0.593769 | tig0006056:-166693 | Msa1342930:CDS |
| AACTATGATGCTCACCAAAG+TGG | 0.602438 | tig0006056:+166722 | None:intergenic |
| TAGTCCTTGTAACTTCAAAG+TGG | 0.607640 | tig0006056:+165551 | None:intergenic |
| TCCAACTGCAGAATAAGTGA+AGG | 0.609438 | tig0006056:+167152 | None:intergenic |
| TCCAGGTACATGATCTCCAA+AGG | 0.613687 | tig0006056:+166656 | None:intergenic |
| TCCAAGTGCTTCGACGACGA+CGG | 0.637344 | tig0006056:-168326 | Msa1342930:CDS |
| CTTCCTAGCAGATTTCAACA+TGG | 0.642728 | tig0006056:-168535 | Msa1342930:CDS |
| GAGGAGTTTACAAGCTCTAG+GGG | 0.643999 | tig0006056:-166928 | Msa1342930:CDS |
| AACTCACATCATACTAACTG+AGG | 0.651693 | tig0006056:+167761 | None:intergenic |
| TTCTATAACAGACAGAAGAG+AGG | 0.662581 | tig0006056:-168433 | Msa1342930:intron |
| GTACAAGTGAGTGTGATGAA+TGG | 0.668186 | tig0006056:+168598 | None:intergenic |
| CAGACTTTGATCAAGTATGG+TGG | 0.668858 | tig0006056:-167200 | Msa1342930:CDS |
| CTGGCACACAGAAAATATGG+AGG | 0.722683 | tig0006056:-166947 | Msa1342930:CDS |
| AGAAGTGTAAAGATTGACGA+CGG | 0.735870 | tig0006056:+168038 | None:intergenic |
| AAAGTGTTCTCCAAACTAGG+CGG | 0.740781 | tig0006056:+166004 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTGATTAATATAAAAA+CGG | + | tig0006056:167633-167652 | None:intergenic | 10.0% |
| !! | ATAAAAACAACTTATTTATA+TGG | + | tig0006056:167759-167778 | None:intergenic | 10.0% |
| !! | AATGTTTAGTTGAAAAAAAT+TGG | - | tig0006056:165875-165894 | Msa1342930:CDS | 15.0% |
| !!! | ATTTTTATTTTTTTATCTGC+AGG | + | tig0006056:165947-165966 | None:intergenic | 15.0% |
| !! | TATGAAAGTTAATCATTTAA+GGG | - | tig0006056:166688-166707 | Msa1342930:CDS | 15.0% |
| !!! | ATTTTTCATCATATAGAAAA+TGG | - | tig0006056:167120-167139 | Msa1342930:intron | 15.0% |
| !! | AATAAGATACAAATTATGTA+TGG | + | tig0006056:167892-167911 | None:intergenic | 15.0% |
| !! | TTAGTTTATATTTAGAAGTT+GGG | + | tig0006056:167951-167970 | None:intergenic | 15.0% |
| !!! | TTTAGTTTATATTTAGAAGT+TGG | + | tig0006056:167952-167971 | None:intergenic | 15.0% |
| !!! | AAAAAATGATAAGTTTGTTT+TGG | - | tig0006056:168481-168500 | Msa1342930:intron | 15.0% |
| !! | GTATGAAAGTTAATCATTTA+AGG | - | tig0006056:166687-166706 | Msa1342930:CDS | 20.0% |
| !! | CAAAAACAAATCATCAATAT+AGG | + | tig0006056:166795-166814 | None:intergenic | 20.0% |
| !! | ATAGAAAATGGAAAATTTCA+AGG | - | tig0006056:167132-167151 | Msa1342930:CDS | 20.0% |
| !! | TAATTACTTGAATTTCAATG+AGG | + | tig0006056:167281-167300 | None:intergenic | 20.0% |
| !!! | TTTTTTTATAAGCAAGTACA+TGG | - | tig0006056:167687-167706 | Msa1342930:intron | 20.0% |
| !! | ACAACTTATTTATATGGAAA+CGG | + | tig0006056:167753-167772 | None:intergenic | 20.0% |
| !! | TTTCTATATTGTATTGTGTT+AGG | - | tig0006056:167998-168017 | Msa1342930:CDS | 20.0% |
| !! | TATATTTCACAAAAGAAGAT+TGG | - | tig0006056:168284-168303 | Msa1342930:intron | 20.0% |
| !!! | ACTTAATAACTAGTTTTGAA+TGG | + | tig0006056:168428-168447 | None:intergenic | 20.0% |
| !! | AAGTGAATGTGGATTTTTAT+AGG | + | tig0006056:165524-165543 | None:intergenic | 25.0% |
| ! | AGCATATGACATTAGAATAT+TGG | + | tig0006056:165666-165685 | None:intergenic | 25.0% |
| !!! | CACTTCAAACTTTAAAATTG+AGG | - | tig0006056:165907-165926 | Msa1342930:CDS | 25.0% |
| !!! | TTGATCATGTCTTTGTTTTT+TGG | - | tig0006056:166284-166303 | Msa1342930:intron | 25.0% |
| !! | TATCAATCAGAATTTTCTTG+AGG | + | tig0006056:166498-166517 | None:intergenic | 25.0% |
| !! | CATAGATCAAATTTTCGATA+TGG | + | tig0006056:166659-166678 | None:intergenic | 25.0% |
| ! | CATATCGAAAATTTGATCTA+TGG | - | tig0006056:166657-166676 | Msa1342930:CDS | 25.0% |
| ! | TTGAATTTCAATGAGGATAA+TGG | + | tig0006056:167274-167293 | None:intergenic | 25.0% |
| ! | GATACAAATTATGTATGGAT+TGG | + | tig0006056:167887-167906 | None:intergenic | 25.0% |
| ! | CTCAAAAGTTTGTATCTTAT+TGG | - | tig0006056:167915-167934 | Msa1342930:intron | 25.0% |
| ! | TTCTCAACAAATGCAAAAAA+GGG | + | tig0006056:168035-168054 | None:intergenic | 25.0% |
| ! | ATTGAAAAATGGTAATAGCA+TGG | + | tig0006056:168198-168217 | None:intergenic | 25.0% |
| !!! | ATTACCATTTTTCAATGATG+TGG | - | tig0006056:168202-168221 | Msa1342930:intron | 25.0% |
| ! | ATTGGGTAATAAACTGTTAA+AGG | + | tig0006056:168257-168276 | None:intergenic | 25.0% |
| ! | GTGAAATATACATGTCTATT+GGG | + | tig0006056:168274-168293 | None:intergenic | 25.0% |
| ! | TGTGAAATATACATGTCTAT+TGG | + | tig0006056:168275-168294 | None:intergenic | 25.0% |
| ACATGTAATGTAGTCATGTT+TGG | - | tig0006056:166240-166259 | Msa1342930:intron | 30.0% | |
| !!! | TGTCTTTGTTTTTTGGTTTC+AGG | - | tig0006056:166291-166310 | Msa1342930:intron | 30.0% |
| GGAAAAAAGTTCAAAATGTG+TGG | - | tig0006056:166315-166334 | Msa1342930:intron | 30.0% | |
| ATTCAGTATGTGAATCTGTT+TGG | - | tig0006056:166342-166361 | Msa1342930:intron | 30.0% | |
| ! | AATCTGTTTGGAATTGCAAT+TGG | - | tig0006056:166354-166373 | Msa1342930:intron | 30.0% |
| TAAGAGTTACACTACTTAGT+TGG | - | tig0006056:166532-166551 | Msa1342930:intron | 30.0% | |
| ! | TGATTTGCAAGACATTGATA+TGG | + | tig0006056:166721-166740 | None:intergenic | 30.0% |
| TGTTTCTTAGGGCAATTAAA+AGG | - | tig0006056:166826-166845 | Msa1342930:intron | 30.0% | |
| AATTGTTATCATGAGAGTCA+TGG | - | tig0006056:166852-166871 | Msa1342930:intron | 30.0% | |
| AAAATTTCAAGGAAGCTTGA+TGG | - | tig0006056:167143-167162 | Msa1342930:CDS | 30.0% | |
| AAATTTCAAGGAAGCTTGAT+GGG | - | tig0006056:167144-167163 | Msa1342930:CDS | 30.0% | |
| !! | TTCAATGAGGATAATGGAAA+AGG | + | tig0006056:167268-167287 | None:intergenic | 30.0% |
| ACAGTGTTCTATTTACTATG+TGG | - | tig0006056:167456-167475 | Msa1342930:intron | 30.0% | |
| TTGGATTCTATAACCCTTAT+TGG | - | tig0006056:167535-167554 | Msa1342930:intron | 30.0% | |
| GTTATAGAATCCAAAATACC+TGG | + | tig0006056:167611-167630 | None:intergenic | 30.0% | |
| ATAAACTGTATAAGCTCTTC+AGG | + | tig0006056:167789-167808 | None:intergenic | 30.0% | |
| CTTCTCAACAAATGCAAAAA+AGG | + | tig0006056:168036-168055 | None:intergenic | 30.0% | |
| !! | TTTTTGCATTTGTTGAGAAG+TGG | - | tig0006056:168036-168055 | Msa1342930:CDS | 30.0% |
| GCTGTCACAAAATTATTCTT+TGG | + | tig0006056:168077-168096 | None:intergenic | 30.0% | |
| CAGCTAATATTGAAATGATC+AGG | + | tig0006056:168358-168377 | None:intergenic | 30.0% | |
| ATTTCAATATTAGCTGCTGT+TGG | - | tig0006056:168362-168381 | Msa1342930:CDS | 30.0% | |
| GACTAATTTCTATGTCTAAG+AGG | - | tig0006056:168619-168638 | Msa1342930:five_prime_UTR | 30.0% | |
| GTCTTTGCTAAAAGTGAATG+TGG | + | tig0006056:165535-165554 | None:intergenic | 35.0% | |
| TTCTATAACAGACAGAAGAG+AGG | - | tig0006056:165719-165738 | Msa1342930:exon | 35.0% | |
| TTTCAGACACTACTTAGAAG+TGG | - | tig0006056:165747-165766 | Msa1342930:CDS | 35.0% | |
| ! | TCAGTCTCAGTTTGGATTTT+GGG | + | tig0006056:165781-165800 | None:intergenic | 35.0% |
| ! | TTCAGTCTCAGTTTGGATTT+TGG | + | tig0006056:165782-165801 | None:intergenic | 35.0% |
| AGAATCAACTGTTGTATTGC+AGG | - | tig0006056:165969-165988 | Msa1342930:CDS | 35.0% | |
| ! | GTTGTATTGCAGGAACATTT+TGG | - | tig0006056:165979-165998 | Msa1342930:CDS | 35.0% |
| ! | AGAAGTGTAAAGATTGACGA+CGG | + | tig0006056:166117-166136 | None:intergenic | 35.0% |
| AGAACAGATGACTCTGTTAA+TGG | - | tig0006056:166158-166177 | Msa1342930:intron | 35.0% | |
| GATGCAGTAAAGTCTATCTT+AGG | - | tig0006056:166203-166222 | Msa1342930:intron | 35.0% | |
| !!! | CTTTGTTTTTTGGTTTCAGG+AGG | - | tig0006056:166294-166313 | Msa1342930:intron | 35.0% |
| AACTCACATCATACTAACTG+AGG | + | tig0006056:166394-166413 | None:intergenic | 35.0% | |
| CTACTCAAAGTATGCTAGTT+TGG | + | tig0006056:166622-166641 | None:intergenic | 35.0% | |
| AATGTCTTGCAAATCATCGA+GGG | - | tig0006056:166725-166744 | Msa1342930:CDS | 35.0% | |
| GTTTGAATTATACGCATCTG+CGG | + | tig0006056:166759-166778 | None:intergenic | 35.0% | |
| ACCTTTGTGCATGTTTCTTA+GGG | - | tig0006056:166815-166834 | Msa1342930:intron | 35.0% | |
| TGTATCCATTGCTTGACATA+TGG | + | tig0006056:166890-166909 | None:intergenic | 35.0% | |
| ! | TTGATCAAAGTCTGGGATTT+GGG | + | tig0006056:166946-166965 | None:intergenic | 35.0% |
| ACCATACTTGATCAAAGTCT+GGG | + | tig0006056:166953-166972 | None:intergenic | 35.0% | |
| ACTTATTCTGCAGTTGGATT+AGG | - | tig0006056:167005-167024 | Msa1342930:CDS | 35.0% | |
| !!! | AAGCATGTTTGTTTTGTTGC+AGG | - | tig0006056:167362-167381 | Msa1342930:intron | 35.0% |
| TGAACACAAGACCATGAAAA+AGG | - | tig0006056:167407-167426 | Msa1342930:intron | 35.0% | |
| GTGTTCTATTTACTATGTGG+TGG | - | tig0006056:167459-167478 | Msa1342930:intron | 35.0% | |
| TATTTACTATGTGGTGGCAT+GGG | - | tig0006056:167465-167484 | Msa1342930:intron | 35.0% | |
| AAACCAGTCAAAAGATTTCC+AGG | + | tig0006056:167516-167535 | None:intergenic | 35.0% | |
| !!! | GGAAATCTTTTGACTGGTTT+TGG | - | tig0006056:167516-167535 | Msa1342930:intron | 35.0% |
| CAATGTCAAGAAGCCAATAA+GGG | + | tig0006056:167551-167570 | None:intergenic | 35.0% | |
| CAATTGTTGTGCACTTAGTT+GGG | - | tig0006056:167580-167599 | Msa1342930:intron | 35.0% | |
| AATTGTTGTGCACTTAGTTG+GGG | - | tig0006056:167581-167600 | Msa1342930:intron | 35.0% | |
| GAAATACCTATTCCTTGCAT+TGG | - | tig0006056:168104-168123 | Msa1342930:CDS | 35.0% | |
| !! | CAAAAAGTGTTCTCCAAACT+AGG | + | tig0006056:168154-168173 | None:intergenic | 35.0% |
| CCAACCACATCATTGAAAAA+TGG | + | tig0006056:168209-168228 | None:intergenic | 35.0% | |
| !! | CCATTTTTCAATGATGTGGT+TGG | - | tig0006056:168206-168225 | Msa1342930:intron | 35.0% |
| AATGATGTGGTTGGAATACT+TGG | - | tig0006056:168215-168234 | Msa1342930:intron | 35.0% | |
| ! | TTGGAATACTTGGAGCTTTT+GGG | - | tig0006056:168225-168244 | Msa1342930:intron | 35.0% |
| CACAAAAGAAGATTGGAAGA+TGG | - | tig0006056:168291-168310 | Msa1342930:intron | 35.0% | |
| !! | TTGGAAGATGGACTAAAAAG+TGG | - | tig0006056:168303-168322 | Msa1342930:intron | 35.0% |
| TAGTCCTTGTAACTTCAAAG+TGG | + | tig0006056:168604-168623 | None:intergenic | 35.0% | |
| GTACAAGTGAGTGTGATGAA+TGG | + | tig0006056:165557-165576 | None:intergenic | 40.0% | |
| !! | CTAGGAAGTGTTCTACTTCT+TGG | + | tig0006056:165605-165624 | None:intergenic | 40.0% |
| CTTCCTAGCAGATTTCAACA+TGG | - | tig0006056:165617-165636 | Msa1342930:three_prime_UTR | 40.0% | |
| ACTCCATGTTGAAATCTGCT+AGG | + | tig0006056:165623-165642 | None:intergenic | 40.0% | |
| ! | AGACTGATTCAGTCTCAGTT+TGG | + | tig0006056:165789-165808 | None:intergenic | 40.0% |
| ! | TCGAAGCACTTGGAATAGTT+GGG | + | tig0006056:165820-165839 | None:intergenic | 40.0% |
| ATGTTGAACCTGTTCTCTTG+AGG | + | tig0006056:165855-165874 | None:intergenic | 40.0% | |
| CATATCATCACTGCTGTGAT+AGG | - | tig0006056:166014-166033 | Msa1342930:CDS | 40.0% | |
| ACTTTGAGTAGTAAGCAGCT+CGG | - | tig0006056:166631-166650 | Msa1342930:CDS | 40.0% | |
| CAATGTCTTGCAAATCATCG+AGG | - | tig0006056:166724-166743 | Msa1342930:CDS | 40.0% | |
| GACCTTTGTGCATGTTTCTT+AGG | - | tig0006056:166814-166833 | Msa1342930:intron | 40.0% | |
| ! | CTTGATCAAAGTCTGGGATT+TGG | + | tig0006056:166947-166966 | None:intergenic | 40.0% |
| TCCCAGACTTTGATCAAGTA+TGG | - | tig0006056:166949-166968 | Msa1342930:CDS | 40.0% | |
| CACCATACTTGATCAAAGTC+TGG | + | tig0006056:166954-166973 | None:intergenic | 40.0% | |
| CAGACTTTGATCAAGTATGG+TGG | - | tig0006056:166952-166971 | Msa1342930:CDS | 40.0% | |
| TCCTTCACTTATTCTGCAGT+TGG | - | tig0006056:166999-167018 | Msa1342930:CDS | 40.0% | |
| TCCAACTGCAGAATAAGTGA+AGG | + | tig0006056:167003-167022 | None:intergenic | 40.0% | |
| TATGCTTGAACCTGCAACTT+TGG | + | tig0006056:167042-167061 | None:intergenic | 40.0% | |
| AGCTTGATGGGAATTAGCAT+TGG | - | tig0006056:167156-167175 | Msa1342930:CDS | 40.0% | |
| TCACTGGCACACAGAAAATA+TGG | - | tig0006056:167202-167221 | Msa1342930:CDS | 40.0% | |
| !! | GAGGATAATGGAAAAGGAGT+AGG | + | tig0006056:167262-167281 | None:intergenic | 40.0% |
| TTCAGAAGGAGGAGACTTTA+AGG | + | tig0006056:167391-167410 | None:intergenic | 40.0% | |
| !! | TTCATGGTCTTGTGTTCAGA+AGG | + | tig0006056:167405-167424 | None:intergenic | 40.0% |
| AACTATGATGCTCACCAAAG+TGG | + | tig0006056:167433-167452 | None:intergenic | 40.0% | |
| CTATTTACTATGTGGTGGCA+TGG | - | tig0006056:167464-167483 | Msa1342930:intron | 40.0% | |
| ! | GTACCTGGAAATCTTTTGAC+TGG | - | tig0006056:167510-167529 | Msa1342930:intron | 40.0% |
| GCAATGTCAAGAAGCCAATA+AGG | + | tig0006056:167552-167571 | None:intergenic | 40.0% | |
| GTGCACAACAATTGCAAAGT+TGG | + | tig0006056:167574-167593 | None:intergenic | 40.0% | |
| GCAATTGTTGTGCACTTAGT+TGG | - | tig0006056:167579-167598 | Msa1342930:intron | 40.0% | |
| CTAGGCGGAAGAAATTGATT+TGG | + | tig0006056:168136-168155 | None:intergenic | 40.0% | |
| TCAATTTCTTCCGCCTAGTT+TGG | - | tig0006056:168138-168157 | Msa1342930:CDS | 40.0% | |
| ! | AAAGTGTTCTCCAAACTAGG+CGG | + | tig0006056:168151-168170 | None:intergenic | 40.0% |
| ! | GTTGGAATACTTGGAGCTTT+TGG | - | tig0006056:168224-168243 | Msa1342930:intron | 40.0% |
| !!! | TACTTGGAGCTTTTGGGTTT+TGG | - | tig0006056:168231-168250 | Msa1342930:intron | 40.0% |
| !! | TGTGCCACTTTGAAGTTACA+AGG | - | tig0006056:168597-168616 | Msa1342930:five_prime_UTR | 40.0% |
| CTTGGAATAGTTGGGCTCAA+TGG | + | tig0006056:165812-165831 | None:intergenic | 45.0% | |
| ! | GTCGAAGCACTTGGAATAGT+TGG | + | tig0006056:165821-165840 | None:intergenic | 45.0% |
| !! | TGGAGTGCTTTCATTGGCTT+GGG | - | tig0006056:166040-166059 | Msa1342930:CDS | 45.0% |
| GCGAAGAGAATCATGACAAC+AGG | + | tig0006056:166095-166114 | None:intergenic | 45.0% | |
| CTTTGAGTAGTAAGCAGCTC+GGG | - | tig0006056:166632-166651 | Msa1342930:CDS | 45.0% | |
| GCCCTAAGAAACATGCACAA+AGG | + | tig0006056:166819-166838 | None:intergenic | 45.0% | |
| CCATTGCTTGACATATGGCA+TGG | + | tig0006056:166885-166904 | None:intergenic | 45.0% | |
| CCATGCCATATGTCAAGCAA+TGG | - | tig0006056:166882-166901 | Msa1342930:CDS | 45.0% | |
| GGACATGATAGCTGCAACTA+TGG | + | tig0006056:166982-167001 | None:intergenic | 45.0% | |
| ! | TCTGCAGTTGGATTAGGTCT+AGG | - | tig0006056:167011-167030 | Msa1342930:CDS | 45.0% |
| CTGGCACACAGAAAATATGG+AGG | - | tig0006056:167205-167224 | Msa1342930:CDS | 45.0% | |
| TGGAGGAGTTTACAAGCTCT+AGG | - | tig0006056:167222-167241 | Msa1342930:CDS | 45.0% | |
| GGAGGAGTTTACAAGCTCTA+GGG | - | tig0006056:167223-167242 | Msa1342930:CDS | 45.0% | |
| ! | GAGGAGTTTACAAGCTCTAG+GGG | - | tig0006056:167224-167243 | Msa1342930:CDS | 45.0% |
| !! | TTTACAAGCTCTAGGGGCAA+TGG | - | tig0006056:167230-167249 | Msa1342930:CDS | 45.0% |
| !! | ATGGTCTTGTGTTCAGAAGG+AGG | + | tig0006056:167402-167421 | None:intergenic | 45.0% |
| GACCATGAAAAAGGCCACTT+TGG | - | tig0006056:167416-167435 | Msa1342930:intron | 45.0% | |
| !! | CACCAAAGTGGCCTTTTTCA+TGG | + | tig0006056:167421-167440 | None:intergenic | 45.0% |
| TCCAGGTACATGATCTCCAA+AGG | + | tig0006056:167499-167518 | None:intergenic | 45.0% | |
| ! | TTGGGGCATACCAGGTATTT+TGG | - | tig0006056:167598-167617 | Msa1342930:intron | 45.0% |
| TACACGCCAATGCAAGGAAT+AGG | + | tig0006056:168113-168132 | None:intergenic | 45.0% | |
| ATTTGGTACACGCCAATGCA+AGG | + | tig0006056:168119-168138 | None:intergenic | 45.0% | |
| CTTGCACTTCAGATGCTTAG+TGG | - | tig0006056:168326-168345 | Msa1342930:CDS | 45.0% | |
| ! | ATCCATTGCTGGAGTGGTTT+TGG | - | tig0006056:168385-168404 | Msa1342930:CDS | 45.0% |
| ATCCAAAACCACTCCAGCAA+TGG | + | tig0006056:168390-168409 | None:intergenic | 45.0% | |
| ATCACTGCTGTGATAGGCTC+TGG | - | tig0006056:166020-166039 | Msa1342930:CDS | 50.0% | |
| !! | AGGCTCTGGAGTGCTTTCAT+TGG | - | tig0006056:166034-166053 | Msa1342930:CDS | 50.0% |
| ! | CTGGAGTGCTTTCATTGGCT+TGG | - | tig0006056:166039-166058 | Msa1342930:CDS | 50.0% |
| GGCAATAGCTCAGCTTGGTT+GGG | - | tig0006056:166061-166080 | Msa1342930:CDS | 50.0% | |
| ! | GCCTTTGGAGATCATGTACC+TGG | - | tig0006056:167495-167514 | Msa1342930:intron | 50.0% |
| AGAAGTGGAGTGCACGTAAG+TGG | - | tig0006056:168051-168070 | Msa1342930:CDS | 50.0% | |
| TGTTGGATCCATTGCTGGAG+TGG | - | tig0006056:168379-168398 | Msa1342930:CDS | 50.0% | |
| TCCAAGTGCTTCGACGACGA+CGG | - | tig0006056:165826-165845 | Msa1342930:CDS | 55.0% | |
| GCTTGGGCAATAGCTCAGCT+TGG | - | tig0006056:166056-166075 | Msa1342930:CDS | 55.0% | |
| GGGCAATAGCTCAGCTTGGT+TGG | - | tig0006056:166060-166079 | Msa1342930:CDS | 55.0% | |
| CTCAGCTTGGTTGGGCTGTT+GGG | - | tig0006056:166069-166088 | Msa1342930:CDS | 55.0% | |
| ! | CTAGGCATCGCCAAAGTTGC+AGG | - | tig0006056:167029-167048 | Msa1342930:intron | 55.0% |
| !! | GGGAATTAGCATTGGTGCCG+TGG | - | tig0006056:167164-167183 | Msa1342930:CDS | 55.0% |
| CTGTGTGCCAGTGACTGTTC+CGG | + | tig0006056:167196-167215 | None:intergenic | 55.0% | |
| ! | GGCATGGGTTATGCAGCCTT+TGG | - | tig0006056:167480-167499 | Msa1342930:intron | 55.0% |
| GCACTTAGTTGGGGCATACC+AGG | - | tig0006056:167590-167609 | Msa1342930:intron | 55.0% | |
| GCTGCTGTTGGATCCATTGC+TGG | - | tig0006056:168374-168393 | Msa1342930:CDS | 55.0% | |
| ! | ACCGTCGTCGTCGAAGCACT+TGG | + | tig0006056:165830-165849 | None:intergenic | 60.0% |
| GACGGTCGCCTCAAGAGAAC+AGG | - | tig0006056:165844-165863 | Msa1342930:CDS | 60.0% | |
| GCTCAGCTTGGTTGGGCTGT+TGG | - | tig0006056:166068-166087 | Msa1342930:CDS | 60.0% | |
| !! | ATTGGTGCCGTGGCACAAGC+CGG | - | tig0006056:167174-167193 | Msa1342930:CDS | 60.0% |
| ! | GACTGTTCCGGCTTGTGCCA+CGG | + | tig0006056:167184-167203 | None:intergenic | 60.0% |
| GCACAAGCCGGAACAGTCAC+TGG | - | tig0006056:167186-167205 | Msa1342930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006056 | gene | 165514 | 168660 | 165514 | ID=Msa1342930;Name=Msa1342930 |
| tig0006056 | mRNA | 165514 | 168660 | 165514 | ID=Msa1342930-mRNA-1;Parent=Msa1342930;Name=Msa1342930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=82|1|1|1|1|1|8|215|512 |
| tig0006056 | exon | 165514 | 166154 | 165514 | ID=Msa1342930-mRNA-1:exon:3897;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 166563 | 166790 | 166563 | ID=Msa1342930-mRNA-1:exon:3896;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 166881 | 167038 | 166881 | ID=Msa1342930-mRNA-1:exon:3895;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 167124 | 167338 | 167124 | ID=Msa1342930-mRNA-1:exon:3894;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 167768 | 167861 | 167768 | ID=Msa1342930-mRNA-1:exon:3893;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 167950 | 168183 | 167950 | ID=Msa1342930-mRNA-1:exon:3892;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 168309 | 168444 | 168309 | ID=Msa1342930-mRNA-1:exon:3891;Parent=Msa1342930-mRNA-1 |
| tig0006056 | exon | 168531 | 168660 | 168531 | ID=Msa1342930-mRNA-1:exon:3890;Parent=Msa1342930-mRNA-1 |
| tig0006056 | five_prime_UTR | 168579 | 168660 | 168579 | ID=Msa1342930-mRNA-1:five_prime_utr;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 168531 | 168578 | 168531 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 168309 | 168444 | 168309 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 167950 | 168183 | 167950 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 167768 | 167861 | 167768 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 167124 | 167338 | 167124 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 166881 | 167038 | 166881 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 166563 | 166790 | 166563 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | CDS | 165729 | 166154 | 165729 | ID=Msa1342930-mRNA-1:cds;Parent=Msa1342930-mRNA-1 |
| tig0006056 | three_prime_UTR | 165514 | 165728 | 165514 | ID=Msa1342930-mRNA-1:three_prime_utr;Parent=Msa1342930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
