Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343110 | XP_003595051.1 | 80.444 | 496 | 18 | 3 | 1 | 417 | 197 | 692 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343110 | sp|Q570S7|CSLG1_ARATH | 31.749 | 463 | 245 | 10 | 21 | 416 | 248 | 706 | 2.49e-65 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343110 | G7INL0 | 80.444 | 496 | 18 | 3 | 1 | 417 | 197 | 692 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208410 | Msa1343110 | 0.826533 | 2.575390e-54 | -8.615850e-47 |
| Msa0208430 | Msa1343110 | 0.825309 | 5.027563e-54 | -8.615850e-47 |
| Msa0209200 | Msa1343110 | 0.816559 | 5.196856e-52 | -8.615850e-47 |
| Msa1343110 | Msa1353500 | 0.996029 | 1.399255e-222 | -8.615850e-47 |
| Msa0249810 | Msa1343110 | 0.833484 | 5.193124e-56 | -8.615850e-47 |
| Msa0283190 | Msa1343110 | 0.942550 | 5.887996e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343110 | MtrunA17_Chr2g0298581 | 80.444 | 496 | 18 | 3 | 1 | 417 | 197 | 692 | 0.0 | 793 |
| Msa1343110 | MtrunA17_Chr2g0307191 | 69.153 | 496 | 74 | 3 | 1 | 417 | 197 | 692 | 0.0 | 684 |
| Msa1343110 | MtrunA17_Chr3g0095791 | 67.742 | 496 | 81 | 3 | 1 | 417 | 196 | 691 | 0.0 | 681 |
| Msa1343110 | MtrunA17_Chr3g0077511 | 61.245 | 498 | 112 | 4 | 1 | 417 | 197 | 694 | 0.0 | 603 |
| Msa1343110 | MtrunA17_Chr4g0046401 | 37.060 | 483 | 220 | 7 | 18 | 416 | 231 | 713 | 3.87e-100 | 314 |
| Msa1343110 | MtrunA17_Chr1g0186381 | 34.990 | 483 | 219 | 9 | 23 | 416 | 236 | 712 | 3.33e-92 | 293 |
| Msa1343110 | MtrunA17_Chr3g0102531 | 28.825 | 451 | 253 | 7 | 34 | 416 | 257 | 707 | 1.49e-54 | 192 |
| Msa1343110 | MtrunA17_Chr3g0102541 | 27.391 | 460 | 261 | 6 | 29 | 416 | 253 | 711 | 4.97e-53 | 188 |
| Msa1343110 | MtrunA17_Chr3g0102551 | 27.171 | 449 | 260 | 9 | 34 | 416 | 268 | 715 | 1.77e-49 | 179 |
| Msa1343110 | MtrunA17_Chr8g0364641 | 27.969 | 522 | 242 | 16 | 20 | 415 | 426 | 939 | 6.36e-48 | 175 |
| Msa1343110 | MtrunA17_Chr2g0307231 | 76.923 | 91 | 16 | 1 | 112 | 197 | 1 | 91 | 2.66e-42 | 144 |
| Msa1343110 | MtrunA17_Chr4g0025201 | 24.691 | 486 | 269 | 14 | 19 | 409 | 227 | 710 | 1.82e-38 | 147 |
| Msa1343110 | MtrunA17_Chr2g0322361 | 26.824 | 425 | 215 | 10 | 34 | 366 | 253 | 673 | 2.84e-38 | 147 |
| Msa1343110 | MtrunA17_Chr2g0322371 | 26.316 | 494 | 261 | 14 | 20 | 416 | 227 | 714 | 4.06e-37 | 143 |
| Msa1343110 | MtrunA17_Chr2g0322351 | 25.336 | 521 | 274 | 19 | 1 | 416 | 201 | 711 | 7.19e-36 | 140 |
| Msa1343110 | MtrunA17_Chr2g0296991 | 44.361 | 133 | 73 | 1 | 30 | 162 | 461 | 592 | 4.68e-33 | 132 |
| Msa1343110 | MtrunA17_Chr2g0296991 | 24.242 | 264 | 150 | 7 | 197 | 415 | 744 | 1002 | 1.74e-17 | 85.1 |
| Msa1343110 | MtrunA17_Chr1g0201731 | 45.865 | 133 | 71 | 1 | 30 | 162 | 530 | 661 | 1.76e-31 | 127 |
| Msa1343110 | MtrunA17_Chr1g0201731 | 26.538 | 260 | 139 | 9 | 197 | 410 | 797 | 1050 | 2.59e-11 | 65.9 |
| Msa1343110 | MtrunA17_Chr2g0284211 | 44.800 | 125 | 69 | 0 | 33 | 157 | 423 | 547 | 2.11e-31 | 127 |
| Msa1343110 | MtrunA17_Chr2g0284211 | 24.906 | 265 | 148 | 7 | 197 | 415 | 676 | 935 | 9.35e-15 | 76.6 |
| Msa1343110 | MtrunA17_Chr8g0383701 | 45.385 | 130 | 70 | 1 | 33 | 162 | 531 | 659 | 2.44e-31 | 127 |
| Msa1343110 | MtrunA17_Chr8g0383701 | 25.758 | 264 | 146 | 7 | 197 | 415 | 796 | 1054 | 1.37e-17 | 85.5 |
| Msa1343110 | MtrunA17_Chr3g0088821 | 42.857 | 133 | 75 | 1 | 30 | 162 | 510 | 641 | 2.54e-31 | 127 |
| Msa1343110 | MtrunA17_Chr3g0088821 | 26.136 | 264 | 146 | 8 | 197 | 415 | 777 | 1036 | 1.06e-17 | 85.9 |
| Msa1343110 | MtrunA17_Chr8g0379241 | 42.188 | 128 | 74 | 0 | 30 | 157 | 435 | 562 | 3.00e-31 | 126 |
| Msa1343110 | MtrunA17_Chr8g0379241 | 24.906 | 265 | 148 | 8 | 197 | 415 | 688 | 947 | 9.39e-15 | 76.6 |
| Msa1343110 | MtrunA17_Chr8g0352231 | 42.969 | 128 | 73 | 0 | 30 | 157 | 510 | 637 | 7.39e-31 | 125 |
| Msa1343110 | MtrunA17_Chr8g0352231 | 22.989 | 348 | 184 | 9 | 144 | 415 | 697 | 1036 | 5.78e-18 | 86.7 |
| Msa1343110 | MtrunA17_Chr7g0267731 | 42.969 | 128 | 73 | 0 | 30 | 157 | 422 | 549 | 2.35e-30 | 124 |
| Msa1343110 | MtrunA17_Chr7g0267731 | 23.308 | 266 | 151 | 8 | 197 | 415 | 685 | 944 | 5.65e-16 | 80.5 |
| Msa1343110 | MtrunA17_Chr3g0137951 | 40.116 | 172 | 98 | 3 | 1 | 169 | 489 | 658 | 6.28e-30 | 122 |
| Msa1343110 | MtrunA17_Chr3g0137951 | 25.769 | 260 | 142 | 9 | 197 | 410 | 785 | 1039 | 4.60e-16 | 80.9 |
| Msa1343110 | MtrunA17_Chr4g0073711 | 41.860 | 129 | 75 | 0 | 29 | 157 | 489 | 617 | 1.59e-29 | 121 |
| Msa1343110 | MtrunA17_Chr4g0073711 | 25.279 | 269 | 142 | 8 | 197 | 415 | 737 | 996 | 4.22e-17 | 84.0 |
| Msa1343110 | MtrunA17_Chr3g0078671 | 42.857 | 133 | 75 | 1 | 30 | 162 | 477 | 608 | 2.36e-28 | 118 |
| Msa1343110 | MtrunA17_Chr3g0078671 | 24.324 | 259 | 148 | 9 | 197 | 409 | 745 | 1001 | 3.76e-14 | 74.7 |
| Msa1343110 | MtrunA17_Chr1g0183381 | 42.636 | 129 | 74 | 0 | 29 | 157 | 361 | 489 | 2.02e-27 | 115 |
| Msa1343110 | MtrunA17_Chr1g0183381 | 23.485 | 264 | 151 | 8 | 197 | 415 | 605 | 862 | 2.24e-14 | 75.5 |
| Msa1343110 | MtrunA17_Chr7g0269741 | 33.178 | 214 | 126 | 4 | 19 | 220 | 596 | 804 | 2.36e-26 | 112 |
| Msa1343110 | MtrunA17_Chr7g0269741 | 22.814 | 263 | 157 | 8 | 197 | 415 | 871 | 1131 | 1.11e-11 | 67.0 |
| Msa1343110 | MtrunA17_Chr4g0039801 | 39.568 | 139 | 83 | 1 | 19 | 157 | 573 | 710 | 2.09e-25 | 109 |
| Msa1343110 | MtrunA17_Chr4g0039801 | 21.756 | 262 | 160 | 6 | 197 | 415 | 844 | 1103 | 2.71e-12 | 68.9 |
| Msa1343110 | MtrunA17_Chr1g0165421 | 39.098 | 133 | 80 | 1 | 25 | 157 | 563 | 694 | 2.46e-25 | 108 |
| Msa1343110 | MtrunA17_Chr1g0165421 | 24.427 | 262 | 153 | 6 | 197 | 415 | 833 | 1092 | 6.96e-13 | 70.9 |
| Msa1343110 | MtrunA17_Chr1g0165411 | 41.129 | 124 | 72 | 1 | 34 | 157 | 558 | 680 | 4.14e-25 | 108 |
| Msa1343110 | MtrunA17_Chr1g0165411 | 23.664 | 262 | 155 | 6 | 197 | 415 | 805 | 1064 | 6.15e-12 | 67.8 |
| Msa1343110 | MtrunA17_Chr5g0410641 | 39.516 | 124 | 74 | 1 | 34 | 157 | 567 | 689 | 1.05e-24 | 107 |
| Msa1343110 | MtrunA17_Chr5g0410641 | 22.433 | 263 | 157 | 9 | 197 | 415 | 823 | 1082 | 2.41e-12 | 68.9 |
| Msa1343110 | MtrunA17_Chr2g0297351 | 40.000 | 125 | 74 | 1 | 33 | 157 | 474 | 597 | 1.51e-23 | 103 |
| Msa1343110 | MtrunA17_Chr2g0297351 | 22.901 | 262 | 157 | 8 | 197 | 415 | 726 | 985 | 4.41e-13 | 71.2 |
| Msa1343110 | MtrunA17_Chr2g0322341 | 42.857 | 105 | 56 | 1 | 25 | 125 | 239 | 343 | 1.99e-23 | 100 |
| Msa1343110 | MtrunA17_Chr7g0274751 | 38.129 | 139 | 85 | 1 | 19 | 157 | 361 | 498 | 1.46e-22 | 100 |
| Msa1343110 | MtrunA17_Chr2g0307221 | 76.087 | 46 | 11 | 0 | 230 | 275 | 1 | 46 | 4.70e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343110 | AT4G24010.1 | 31.749 | 463 | 245 | 10 | 21 | 416 | 248 | 706 | 2.54e-66 | 225 |
| Msa1343110 | AT4G24000.2 | 30.000 | 460 | 249 | 10 | 21 | 410 | 42 | 498 | 1.37e-62 | 211 |
| Msa1343110 | AT4G24000.1 | 30.000 | 460 | 249 | 10 | 21 | 410 | 234 | 690 | 4.17e-61 | 211 |
| Msa1343110 | AT4G23990.2 | 30.735 | 449 | 243 | 9 | 28 | 410 | 59 | 505 | 4.78e-61 | 207 |
| Msa1343110 | AT4G23990.1 | 30.735 | 449 | 243 | 9 | 28 | 410 | 273 | 719 | 1.66e-59 | 207 |
| Msa1343110 | AT1G55850.1 | 27.692 | 455 | 265 | 8 | 25 | 416 | 252 | 705 | 1.79e-50 | 181 |
| Msa1343110 | AT2G32540.1 | 28.352 | 455 | 213 | 16 | 28 | 376 | 245 | 692 | 1.43e-43 | 162 |
| Msa1343110 | AT2G32530.1 | 28.508 | 449 | 210 | 14 | 31 | 374 | 248 | 690 | 5.05e-43 | 160 |
| Msa1343110 | AT4G15290.1 | 27.632 | 456 | 219 | 16 | 28 | 379 | 245 | 693 | 1.89e-38 | 147 |
| Msa1343110 | AT4G38190.1 | 24.805 | 512 | 260 | 13 | 25 | 415 | 560 | 1067 | 2.19e-38 | 148 |
| Msa1343110 | AT4G15320.3 | 27.133 | 457 | 221 | 14 | 28 | 379 | 245 | 694 | 2.15e-37 | 144 |
| Msa1343110 | AT4G15320.4 | 27.133 | 457 | 221 | 14 | 28 | 379 | 260 | 709 | 2.24e-37 | 144 |
| Msa1343110 | AT4G15320.5 | 27.133 | 457 | 221 | 14 | 28 | 379 | 245 | 694 | 2.27e-37 | 144 |
| Msa1343110 | AT2G32620.4 | 28.319 | 452 | 211 | 15 | 28 | 374 | 149 | 592 | 2.44e-37 | 144 |
| Msa1343110 | AT2G32620.1 | 28.319 | 452 | 211 | 15 | 28 | 374 | 245 | 688 | 5.42e-37 | 143 |
| Msa1343110 | AT2G32610.1 | 26.457 | 446 | 218 | 12 | 28 | 369 | 246 | 685 | 2.35e-35 | 139 |
| Msa1343110 | AT2G32620.2 | 32.581 | 310 | 145 | 9 | 28 | 284 | 245 | 543 | 2.66e-35 | 137 |
| Msa1343110 | AT2G32620.3 | 33.452 | 281 | 127 | 7 | 28 | 255 | 245 | 518 | 3.03e-34 | 134 |
| Msa1343110 | AT5G09870.1 | 47.656 | 128 | 67 | 0 | 30 | 157 | 503 | 630 | 9.31e-33 | 131 |
| Msa1343110 | AT5G09870.1 | 25.000 | 268 | 143 | 8 | 197 | 415 | 769 | 1027 | 2.78e-15 | 78.6 |
| Msa1343110 | AT5G64740.1 | 46.875 | 128 | 68 | 0 | 30 | 157 | 515 | 642 | 2.11e-32 | 130 |
| Msa1343110 | AT5G64740.1 | 24.254 | 268 | 145 | 8 | 197 | 415 | 784 | 1042 | 4.13e-14 | 75.1 |
| Msa1343110 | AT4G39350.1 | 46.875 | 128 | 68 | 0 | 30 | 157 | 516 | 643 | 5.56e-32 | 129 |
| Msa1343110 | AT4G39350.1 | 24.335 | 263 | 151 | 6 | 197 | 415 | 783 | 1041 | 1.47e-12 | 70.1 |
| Msa1343110 | AT2G21770.1 | 45.865 | 133 | 71 | 1 | 30 | 162 | 521 | 652 | 7.85e-32 | 129 |
| Msa1343110 | AT2G21770.1 | 23.385 | 325 | 179 | 10 | 152 | 415 | 730 | 1045 | 3.75e-15 | 78.2 |
| Msa1343110 | AT4G18780.1 | 45.600 | 125 | 68 | 0 | 33 | 157 | 426 | 550 | 9.30e-32 | 128 |
| Msa1343110 | AT4G18780.1 | 27.068 | 266 | 141 | 8 | 197 | 415 | 682 | 941 | 5.31e-16 | 80.9 |
| Msa1343110 | AT5G05170.1 | 44.000 | 125 | 70 | 0 | 33 | 157 | 501 | 625 | 6.68e-31 | 125 |
| Msa1343110 | AT5G05170.1 | 24.627 | 268 | 145 | 8 | 197 | 415 | 764 | 1023 | 2.75e-18 | 87.8 |
| Msa1343110 | AT5G17420.1 | 44.800 | 125 | 69 | 0 | 33 | 157 | 480 | 604 | 7.55e-31 | 125 |
| Msa1343110 | AT5G17420.1 | 26.038 | 265 | 145 | 8 | 197 | 415 | 725 | 984 | 4.48e-20 | 93.6 |
| Msa1343110 | AT2G25540.1 | 43.571 | 140 | 78 | 1 | 30 | 169 | 494 | 632 | 1.04e-30 | 125 |
| Msa1343110 | AT2G25540.1 | 24.621 | 264 | 150 | 8 | 197 | 415 | 759 | 1018 | 5.74e-15 | 77.8 |
| Msa1343110 | AT5G44030.3 | 43.750 | 128 | 72 | 0 | 30 | 157 | 175 | 302 | 1.36e-30 | 124 |
| Msa1343110 | AT5G44030.3 | 24.528 | 265 | 150 | 9 | 197 | 415 | 468 | 728 | 6.86e-15 | 77.4 |
| Msa1343110 | AT4G32410.1 | 43.571 | 140 | 78 | 1 | 30 | 169 | 514 | 652 | 1.92e-30 | 124 |
| Msa1343110 | AT4G32410.1 | 26.119 | 268 | 141 | 9 | 197 | 415 | 779 | 1038 | 5.70e-17 | 84.0 |
| Msa1343110 | AT5G44030.2 | 43.750 | 128 | 72 | 0 | 30 | 157 | 483 | 610 | 2.31e-30 | 124 |
| Msa1343110 | AT5G44030.2 | 24.528 | 265 | 150 | 9 | 197 | 415 | 776 | 1036 | 6.91e-15 | 77.4 |
| Msa1343110 | AT5G44030.1 | 43.750 | 128 | 72 | 0 | 30 | 157 | 454 | 581 | 2.91e-30 | 124 |
| Msa1343110 | AT5G44030.1 | 24.528 | 265 | 150 | 9 | 197 | 415 | 747 | 1007 | 6.90e-15 | 77.4 |
| Msa1343110 | AT4G15320.1 | 27.469 | 324 | 134 | 7 | 28 | 255 | 288 | 606 | 4.96e-27 | 114 |
| Msa1343110 | AT4G15320.2 | 27.469 | 324 | 134 | 7 | 28 | 255 | 245 | 563 | 6.04e-27 | 114 |
| Msa1343110 | AT1G02730.1 | 38.849 | 139 | 84 | 1 | 19 | 157 | 604 | 741 | 1.88e-25 | 109 |
| Msa1343110 | AT1G02730.1 | 22.137 | 262 | 160 | 7 | 197 | 415 | 883 | 1143 | 5.05e-11 | 65.5 |
| Msa1343110 | AT5G16910.1 | 39.850 | 133 | 79 | 1 | 25 | 157 | 585 | 716 | 1.28e-24 | 107 |
| Msa1343110 | AT5G16910.1 | 23.282 | 262 | 156 | 7 | 197 | 415 | 847 | 1106 | 2.85e-12 | 69.3 |
| Msa1343110 | AT3G03050.1 | 39.850 | 133 | 79 | 1 | 25 | 157 | 582 | 713 | 1.64e-24 | 107 |
| Msa1343110 | AT3G03050.1 | 22.433 | 263 | 157 | 6 | 197 | 415 | 847 | 1106 | 1.20e-12 | 70.5 |
| Msa1343110 | AT1G32180.1 | 39.516 | 124 | 74 | 1 | 34 | 157 | 428 | 550 | 5.80e-24 | 105 |
| Msa1343110 | AT1G32180.1 | 23.346 | 257 | 154 | 6 | 197 | 410 | 682 | 938 | 5.64e-13 | 71.6 |
| Msa1343110 | AT1G32180.2 | 39.516 | 124 | 74 | 1 | 34 | 157 | 428 | 550 | 5.80e-24 | 105 |
| Msa1343110 | AT1G32180.2 | 23.346 | 257 | 154 | 6 | 197 | 410 | 682 | 938 | 5.64e-13 | 71.6 |
| Msa1343110 | AT2G33100.2 | 38.710 | 124 | 75 | 1 | 34 | 157 | 482 | 604 | 7.13e-22 | 99.0 |
| Msa1343110 | AT2G33100.2 | 22.519 | 262 | 158 | 8 | 197 | 415 | 740 | 999 | 2.31e-11 | 66.2 |
| Msa1343110 | AT2G33100.1 | 38.710 | 124 | 75 | 1 | 34 | 157 | 482 | 604 | 7.13e-22 | 99.0 |
| Msa1343110 | AT2G33100.1 | 22.519 | 262 | 158 | 8 | 197 | 415 | 740 | 999 | 2.31e-11 | 66.2 |
Find 82 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATATTGTTTGCTTCTT+TGG | 0.079838 | tig0006226:-23422 | Msa1343110:CDS |
| TTTGCTTCTTTGGTGGTTTA+TGG | 0.157159 | tig0006226:-23412 | Msa1343110:CDS |
| TGATTACAGCTTAGGGTATC+AGG | 0.238209 | tig0006226:-25515 | Msa1343110:intron |
| GTCACCATACAAAGATTCTT+TGG | 0.260388 | tig0006226:+27436 | Msa1343110:intergenic |
| TTGGGTTGCTTCCGAAGTTT+TGG | 0.268644 | tig0006226:+27455 | Msa1343110:intergenic |
| AAATATAGTCCATTCACTTA+TGG | 0.291383 | tig0006226:-24004 | Msa1343110:CDS |
| CAACCAGTGGCATTTCCTTT+TGG | 0.305968 | tig0006226:+25715 | Msa1343110:intergenic |
| AGTAGAAGTGCATTACTCTT+TGG | 0.327163 | tig0006226:-25132 | Msa1343110:CDS |
| GAGCCATTACATAACTAATA+AGG | 0.332006 | tig0006226:+23342 | Msa1343110:intergenic |
| TGTGAAACATTTGTGGGAAT+TGG | 0.356347 | tig0006226:+25366 | Msa1343110:intergenic |
| ACAACCTGATCATCCCAAAA+AGG | 0.366065 | tig0006226:+27604 | Msa1343110:intergenic |
| TTGTATCTATGAGGAACATT+TGG | 0.386047 | tig0006226:+25669 | Msa1343110:intergenic |
| AAGGTTAAACAATGAACAAT+AGG | 0.386453 | tig0006226:+23968 | Msa1343110:intergenic |
| AATATTGTTTGCTTCTTTGG+TGG | 0.391566 | tig0006226:-23419 | Msa1343110:CDS |
| ATTCCTTCTTTCACGTTAGT+TGG | 0.391890 | tig0006226:+24076 | Msa1343110:intergenic |
| AAACTTGAGAGTACCATTAC+TGG | 0.413359 | tig0006226:-24172 | Msa1343110:intron |
| TCACCATACAAAGATTCTTT+GGG | 0.416966 | tig0006226:+27437 | Msa1343110:intergenic |
| AGTATGAGTAACACAATCAT+TGG | 0.420712 | tig0006226:+23443 | Msa1343110:intergenic |
| CTTGATGCTCAAAACAACTT+TGG | 0.422960 | tig0006226:-24542 | Msa1343110:CDS |
| TTTCCTTATTAGTTATGTAA+TGG | 0.435667 | tig0006226:-23345 | Msa1343110:CDS |
| TTTATCGAGGTAATTACAAC+TGG | 0.437734 | tig0006226:-23674 | Msa1343110:CDS |
| AATGCGATTGTAACATCAAT+CGG | 0.451594 | tig0006226:-23617 | Msa1343110:CDS |
| CAATCTACGATAAGAACATA+AGG | 0.458599 | tig0006226:+25476 | Msa1343110:intergenic |
| GTTATAATCCCCTCTAGAAT+AGG | 0.460351 | tig0006226:+23311 | Msa1343110:intergenic |
| ATCTCCTTCATTGTAGAGGT+TGG | 0.465697 | tig0006226:-24147 | Msa1343110:CDS |
| GCAAGATCTTGAGAGATTTG+AGG | 0.467361 | tig0006226:+25395 | Msa1343110:intergenic |
| GAAGATCATTAACGACCAAA+AGG | 0.469344 | tig0006226:-25730 | Msa1343110:intron |
| GGTGTATGGAATAACATATA+GGG | 0.472437 | tig0006226:+23925 | Msa1343110:intergenic |
| CAACCCAAAGAATCTTTGTA+TGG | 0.479542 | tig0006226:-27440 | Msa1343110:CDS |
| CGATGGTGCAGCGTTGCTCA+TGG | 0.481187 | tig0006226:-23468 | Msa1343110:CDS |
| GGCTATCTCCTTCATTGTAG+AGG | 0.483566 | tig0006226:-24151 | Msa1343110:CDS |
| CTTGAAAGTCCATAAGTGAA+TGG | 0.490494 | tig0006226:+23995 | Msa1343110:intergenic |
| TACGCAAAAGAAATATGAGC+AGG | 0.495327 | tig0006226:-23504 | Msa1343110:CDS |
| GAATGAGTCAGTTGATAAAG+TGG | 0.496228 | tig0006226:-24057 | Msa1343110:CDS |
| CAGGGTAGGTTTAATTTCGA+TGG | 0.500941 | tig0006226:-23485 | Msa1343110:CDS |
| CTAATGTTGTGAAACATTTG+TGG | 0.509676 | tig0006226:+25359 | Msa1343110:intergenic |
| ATGGATGGGTTAAGAGGTCC+AGG | 0.516315 | tig0006226:-25180 | Msa1343110:CDS |
| TTAAGAGGTCCAGGTCTCAC+TGG | 0.518397 | tig0006226:-25171 | Msa1343110:CDS |
| ATCTCCAACCTCTACAATGA+AGG | 0.521816 | tig0006226:+24143 | Msa1343110:intergenic |
| ACAATGTGGAAAGGAATGGA+TGG | 0.521925 | tig0006226:-25195 | Msa1343110:CDS |
| TAATGTTGTGAAACATTTGT+GGG | 0.524590 | tig0006226:+25360 | Msa1343110:intergenic |
| GGTCCAGGTCTCACTGGCAG+TGG | 0.527591 | tig0006226:-25165 | Msa1343110:CDS |
| TCTAAGCTATCCTATTCTAG+AGG | 0.529147 | tig0006226:-23321 | Msa1343110:CDS |
| ATCGAGGTAATTACAACTGG+TGG | 0.531798 | tig0006226:-23671 | Msa1343110:CDS |
| ATTATAACTATGAAAACAAA+GGG | 0.535272 | tig0006226:-23296 | Msa1343110:CDS |
| GCTCCTCCTTTGTATCTATG+AGG | 0.536638 | tig0006226:+25660 | Msa1343110:intergenic |
| TTAGACAATGTGGAAAGGAA+TGG | 0.546732 | tig0006226:-25199 | Msa1343110:intron |
| TAAGCTTGACAAGTGACAAA+AGG | 0.547809 | tig0006226:+23949 | Msa1343110:intergenic |
| TGGTGACTGATAGACATTCT+CGG | 0.549468 | tig0006226:-27420 | Msa1343110:CDS |
| CTAAGCTATCCTATTCTAGA+GGG | 0.554636 | tig0006226:-23320 | Msa1343110:CDS |
| TTCTATTAGACAATGTGGAA+AGG | 0.555279 | tig0006226:-25204 | Msa1343110:intron |
| AATCTACGATAAGAACATAA+GGG | 0.556072 | tig0006226:+25477 | Msa1343110:intergenic |
| TGATAGACATTCTCGGATTG+AGG | 0.558381 | tig0006226:-27413 | Msa1343110:intron |
| TTTCCACTGCCAGTGAGACC+TGG | 0.561449 | tig0006226:+25162 | Msa1343110:intergenic |
| AAAATGGTTTGGGTTGAACA+AGG | 0.566860 | tig0006226:-23564 | Msa1343110:CDS |
| GTGGCTCATCGACACATTGG+TGG | 0.569532 | tig0006226:-23652 | Msa1343110:CDS |
| ATGCGATTGTAACATCAATC+GGG | 0.573290 | tig0006226:-23616 | Msa1343110:CDS |
| AATGAGTCAGTTGATAAAGT+GGG | 0.576301 | tig0006226:-24056 | Msa1343110:CDS |
| GCTCCAACTAACGTGAAAGA+AGG | 0.576975 | tig0006226:-24079 | Msa1343110:CDS |
| AAAAGAAATATGAGCAGGGT+AGG | 0.580819 | tig0006226:-23499 | Msa1343110:CDS |
| TAACTATGAAAACAAAGGGT+GGG | 0.580904 | tig0006226:-23292 | Msa1343110:CDS |
| CAATGTGGAAAGGAATGGAT+GGG | 0.583820 | tig0006226:-25194 | Msa1343110:CDS |
| ATGGAGACTACTCAATGTGA+GGG | 0.586276 | tig0006226:-23393 | Msa1343110:CDS |
| AATGTTCCTCATAGATACAA+AGG | 0.598503 | tig0006226:-25666 | Msa1343110:CDS |
| CGACCAAAAGGAAATGCCAC+TGG | 0.605093 | tig0006226:-25718 | Msa1343110:CDS |
| GATTACAGCTTAGGGTATCA+GGG | 0.607803 | tig0006226:-25514 | Msa1343110:intron |
| GATTATAACTATGAAAACAA+AGG | 0.608756 | tig0006226:-23297 | Msa1343110:CDS |
| AAAGGAATGGATGGGTTAAG+AGG | 0.611560 | tig0006226:-25186 | Msa1343110:CDS |
| ACATATATAATAGTGAGGCT+AGG | 0.613526 | tig0006226:-25328 | Msa1343110:CDS |
| ATAACTATGAAAACAAAGGG+TGG | 0.613730 | tig0006226:-23293 | Msa1343110:CDS |
| TATGGAGACTACTCAATGTG+AGG | 0.626897 | tig0006226:-23394 | Msa1343110:CDS |
| CTGGTGGCTCATCGACACAT+TGG | 0.629377 | tig0006226:-23655 | Msa1343110:CDS |
| ATGAAGGAGATAGCCAGTAA+TGG | 0.638543 | tig0006226:+24159 | Msa1343110:intergenic |
| ACGCAAAAGAAATATGAGCA+GGG | 0.640748 | tig0006226:-23503 | Msa1343110:CDS |
| GAAAGACATATATAATAGTG+AGG | 0.642838 | tig0006226:-25333 | Msa1343110:CDS |
| GTATCAGGGCTAATCAGCAA+TGG | 0.646196 | tig0006226:-25500 | Msa1343110:CDS |
| GGAGCACATCCCAAGAAACA+TGG | 0.648652 | tig0006226:+24097 | Msa1343110:intergenic |
| AGGAGGAGCTCTCAATACAC+TGG | 0.655097 | tig0006226:-25646 | Msa1343110:intron |
| CGAGAAACATAAACAACCAG+TGG | 0.661347 | tig0006226:+25702 | Msa1343110:intergenic |
| TAAGCTATCCTATTCTAGAG+GGG | 0.672123 | tig0006226:-23319 | Msa1343110:CDS |
| GTTCCTCATAGATACAAAGG+AGG | 0.693020 | tig0006226:-25663 | Msa1343110:CDS |
| GAATCACTGAAAGCAATACG+TGG | 0.728981 | tig0006226:-24500 | Msa1343110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTAAACAAATAAAAA+TGG | - | tig0006226:23841-23860 | Msa1343110:intron | 10.0% |
| !!! | ATTTGTATTTTAATATTTAG+AGG | - | tig0006226:24516-24535 | Msa1343110:CDS | 10.0% |
| !!! | GAAAAATGAATAATTTTAAA+AGG | + | tig0006226:25064-25083 | Msa1343110:intergenic | 10.0% |
| !! | TTAATTTAAAGAAATTTAAG+AGG | + | tig0006226:25314-25333 | Msa1343110:intergenic | 10.0% |
| !! | AATGTTATATTTATTCATAT+TGG | - | tig0006226:26288-26307 | Msa1343110:intron | 10.0% |
| !! | TATATATATGGAATTTATAA+TGG | - | tig0006226:26324-26343 | Msa1343110:intron | 10.0% |
| !!! | TTGATTTTTTAGAAATGTTA+TGG | - | tig0006226:23812-23831 | Msa1343110:intron | 15.0% |
| !! | ATTATTTCCATATTTAAAAG+AGG | + | tig0006226:23937-23956 | Msa1343110:intergenic | 15.0% |
| !!! | TAACTTCTTGTTATTAAAAA+TGG | - | tig0006226:24667-24686 | Msa1343110:intron | 15.0% |
| !!! | TGAATAATTTTAAAAGGAAA+TGG | + | tig0006226:25058-25077 | Msa1343110:intergenic | 15.0% |
| !! | ATCTTCAAAAAAAGATAATA+AGG | + | tig0006226:25159-25178 | Msa1343110:intergenic | 15.0% |
| !!! | AAAATTGTCATTTTCTAAAT+AGG | - | tig0006226:26098-26117 | Msa1343110:intron | 15.0% |
| !!! | AAATTGTCATTTTCTAAATA+GGG | - | tig0006226:26099-26118 | Msa1343110:intron | 15.0% |
| !! | AACATAAAATACACAAATTA+GGG | - | tig0006226:26534-26553 | Msa1343110:intron | 15.0% |
| !!! | ATCATTTTATTTTATGTTAC+AGG | - | tig0006226:27147-27166 | Msa1343110:intron | 15.0% |
| !! | ATTATAACTATGAAAACAAA+GGG | - | tig0006226:27607-27626 | Msa1343110:five_prime_UTR | 15.0% |
| !! | CAAAAAAATATCCAAAACTT+CGG | - | tig0006226:23437-23456 | Msa1343110:CDS | 20.0% |
| !!! | ATTTTTTGGATTGTTATTCT+CGG | - | tig0006226:23742-23761 | Msa1343110:intron | 20.0% |
| !!! | TTCAATTTCTCCATTTTTAA+GGG | + | tig0006226:24100-24119 | Msa1343110:intergenic | 20.0% |
| !!! | TTTCAATTTCTCCATTTTTA+AGG | + | tig0006226:24101-24120 | Msa1343110:intergenic | 20.0% |
| !!! | ACCAATTTTTTGTTTTTGAA+TGG | + | tig0006226:24273-24292 | Msa1343110:intergenic | 20.0% |
| !!! | AACAAAAAATTGGTTTAGAT+AGG | - | tig0006226:24279-24298 | Msa1343110:intron | 20.0% |
| !! | TTAATAATATGGCAACAATT+GGG | + | tig0006226:24352-24371 | Msa1343110:intergenic | 20.0% |
| !!! | CATTTTCTGAGTTAATAATA+TGG | + | tig0006226:24363-24382 | Msa1343110:intergenic | 20.0% |
| !!! | ACAAATACCATAATCTTTTA+GGG | + | tig0006226:24502-24521 | Msa1343110:intergenic | 20.0% |
| !!! | TACAAATACCATAATCTTTT+AGG | + | tig0006226:24503-24522 | Msa1343110:intergenic | 20.0% |
| !!! | CTTGTTATTAAAAATGGTAA+AGG | - | tig0006226:24673-24692 | Msa1343110:intron | 20.0% |
| !!! | TAATATAGACCTCTAAAAAA+TGG | + | tig0006226:24710-24729 | Msa1343110:intergenic | 20.0% |
| !! | GATTGAACTTAATATTTACA+TGG | - | tig0006226:24730-24749 | Msa1343110:intron | 20.0% |
| !!! | AAGACAAACTTAATTCTTTT+GGG | + | tig0006226:24795-24814 | Msa1343110:intergenic | 20.0% |
| !!! | AATGTTAATAAGTGTCATTA+GGG | + | tig0006226:24902-24921 | Msa1343110:intergenic | 20.0% |
| !!! | AAATGTTAATAAGTGTCATT+AGG | + | tig0006226:24903-24922 | Msa1343110:intergenic | 20.0% |
| !!! | ATAAGGAATATTTTGTTTGT+AGG | + | tig0006226:25095-25114 | Msa1343110:intergenic | 20.0% |
| !!! | TGGTCATTATTTTGATAATA+AGG | + | tig0006226:25112-25131 | Msa1343110:intergenic | 20.0% |
| !!! | TCATCAATATATGTGTATTT+TGG | + | tig0006226:25132-25151 | Msa1343110:intergenic | 20.0% |
| !!! | TTTTGCCATTTCTTTTAATA+GGG | + | tig0006226:25925-25944 | Msa1343110:intergenic | 20.0% |
| !!! | AATTGTCATTTTCTAAATAG+GGG | - | tig0006226:26100-26119 | Msa1343110:intron | 20.0% |
| !!! | AAGCTTTATCTTTAAAATAC+AGG | + | tig0006226:26175-26194 | Msa1343110:intergenic | 20.0% |
| !! | GAACATAAAATACACAAATT+AGG | - | tig0006226:26533-26552 | Msa1343110:intron | 20.0% |
| !!! | TTATTTTATGTTACAGGTTA+CGG | - | tig0006226:27153-27172 | Msa1343110:intron | 20.0% |
| !! | TTATAGAAGCAACAAAAAAA+TGG | - | tig0006226:27323-27342 | Msa1343110:intron | 20.0% |
| !! | TTTCCTTATTAGTTATGTAA+TGG | - | tig0006226:27558-27577 | Msa1343110:five_prime_UTR | 20.0% |
| !! | GATTATAACTATGAAAACAA+AGG | - | tig0006226:27606-27625 | Msa1343110:five_prime_UTR | 20.0% |
| !! | TGATGATTTTACAATTTGAC+AGG | - | tig0006226:23397-23416 | Msa1343110:CDS | 25.0% |
| !! | TTTTTGCATTTTCTCGTATT+TGG | + | tig0006226:23423-23442 | Msa1343110:intergenic | 25.0% |
| ! | ATAAAGTCACCAATAAATTG+AGG | - | tig0006226:23684-23703 | Msa1343110:CDS | 25.0% |
| ! | ATAGGATAACCTCAATTTAT+TGG | + | tig0006226:23696-23715 | Msa1343110:intergenic | 25.0% |
| !!! | TATCCTATGTGTTTGTTTTA+AGG | - | tig0006226:23708-23727 | Msa1343110:intron | 25.0% |
| ! | TTACCTTAAAACAAACACAT+AGG | + | tig0006226:23714-23733 | Msa1343110:intergenic | 25.0% |
| !!! | AGGTAAGAACTTACATTTTT+TGG | - | tig0006226:23728-23747 | Msa1343110:intron | 25.0% |
| ! | ATTCTCGGAATAATATTTCT+AGG | - | tig0006226:23757-23776 | Msa1343110:intron | 25.0% |
| !! | GATTCATCCTCTTTTAAATA+TGG | - | tig0006226:23927-23946 | Msa1343110:intron | 25.0% |
| ! | TCATGTGTAAATAACATTTC+TGG | - | tig0006226:23968-23987 | Msa1343110:CDS | 25.0% |
| !! | AAGTCATTATTTCTTTGTTG+AGG | + | tig0006226:24244-24263 | Msa1343110:intergenic | 25.0% |
| ! | GCCATTCAAAAACAAAAAAT+TGG | - | tig0006226:24269-24288 | Msa1343110:intron | 25.0% |
| ! | GTTAATAATATGGCAACAAT+TGG | + | tig0006226:24353-24372 | Msa1343110:intergenic | 25.0% |
| ! | AAGAAAGTAATGCAAATTCA+TGG | + | tig0006226:24460-24479 | Msa1343110:intergenic | 25.0% |
| ! | TATTTAGAGGTCATCTAATA+TGG | - | tig0006226:24529-24548 | Msa1343110:CDS | 25.0% |
| !!! | TATCTTAGACCATTTTTTAG+AGG | - | tig0006226:24698-24717 | Msa1343110:intron | 25.0% |
| !! | TCCTTAAACAATGTCTTTTA+GGG | + | tig0006226:24771-24790 | Msa1343110:intergenic | 25.0% |
| !! | TTCCTTAAACAATGTCTTTT+AGG | + | tig0006226:24772-24791 | Msa1343110:intergenic | 25.0% |
| !! | CAAGACAAACTTAATTCTTT+TGG | + | tig0006226:24796-24815 | Msa1343110:intergenic | 25.0% |
| !!! | CACTTATTAACATTTTGATG+AGG | - | tig0006226:24908-24927 | Msa1343110:intron | 25.0% |
| !! | ATGTTTCAACTTGTTCATTA+GGG | - | tig0006226:24993-25012 | Msa1343110:intron | 25.0% |
| ! | TGTCTTAATGACATTGTTTA+AGG | - | tig0006226:25029-25048 | Msa1343110:intron | 25.0% |
| ! | AATCTACGATAAGAACATAA+GGG | + | tig0006226:25429-25448 | Msa1343110:intergenic | 25.0% |
| ! | TAATGTTGTGAAACATTTGT+GGG | + | tig0006226:25546-25565 | Msa1343110:intergenic | 25.0% |
| ! | GAAAGACATATATAATAGTG+AGG | - | tig0006226:25570-25589 | Msa1343110:intron | 25.0% |
| !! | ATCTAAAGAGCTTGAAATTT+TGG | + | tig0006226:25621-25640 | Msa1343110:intergenic | 25.0% |
| !! | GAATTTTCTATTAGACAATG+TGG | - | tig0006226:25694-25713 | Msa1343110:CDS | 25.0% |
| ! | TTAGAATTAATAATGTCCTC+AGG | + | tig0006226:25857-25876 | Msa1343110:intergenic | 25.0% |
| !!! | TCGCAACATTTTAAAACATA+GGG | + | tig0006226:25894-25913 | Msa1343110:intergenic | 25.0% |
| !!! | ATCGCAACATTTTAAAACAT+AGG | + | tig0006226:25895-25914 | Msa1343110:intergenic | 25.0% |
| !!! | GTTTTAAAATGTTGCGATTT+TGG | - | tig0006226:25897-25916 | Msa1343110:intron | 25.0% |
| !!! | TTTGCCATTTCTTTTAATAG+GGG | + | tig0006226:25924-25943 | Msa1343110:intergenic | 25.0% |
| !!! | CTTTTGCCATTTCTTTTAAT+AGG | + | tig0006226:25926-25945 | Msa1343110:intergenic | 25.0% |
| ! | ATCATATTTCCCTTATGTTA+GGG | + | tig0006226:25985-26004 | Msa1343110:intergenic | 25.0% |
| !!! | ATTGTCATTTTCTAAATAGG+GGG | - | tig0006226:26101-26120 | Msa1343110:intron | 25.0% |
| ! | CATTCTTAACCAATAATCTT+AGG | - | tig0006226:26205-26224 | Msa1343110:intron | 25.0% |
| !! | TATTTATTCATATTGGCTGA+CGG | - | tig0006226:26295-26314 | Msa1343110:intron | 25.0% |
| ! | TATATGGAATTTATAATGGC+AGG | - | tig0006226:26328-26347 | Msa1343110:intron | 25.0% |
| ! | ATATGGAATTTATAATGGCA+GGG | - | tig0006226:26329-26348 | Msa1343110:intron | 25.0% |
| ! | GCAAAAATATCGAAATTGTT+AGG | + | tig0006226:26602-26621 | Msa1343110:intergenic | 25.0% |
| ! | GATATCAATCAAGTTAATGA+TGG | + | tig0006226:26685-26704 | Msa1343110:intergenic | 25.0% |
| ! | AAATATAGTCCATTCACTTA+TGG | - | tig0006226:26899-26918 | Msa1343110:intron | 25.0% |
| ! | AAGGTTAAACAATGAACAAT+AGG | + | tig0006226:26938-26957 | Msa1343110:intergenic | 25.0% |
| ! | ATTTATCCATTTCTTACCTT+TGG | + | tig0006226:27055-27074 | Msa1343110:intergenic | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | - | tig0006226:27107-27126 | Msa1343110:intron | 25.0% |
| ! | ATTGTAAACACTATAAACCA+AGG | + | tig0006226:27181-27200 | Msa1343110:intergenic | 25.0% |
| ! | AAGCAACAAAAAAATGGTTT+GGG | - | tig0006226:27329-27348 | Msa1343110:intron | 25.0% |
| ! | CTAAATATTGTTTGCTTCTT+TGG | - | tig0006226:27481-27500 | Msa1343110:exon | 25.0% |
| ! | TTTCTGTGTTGTGTTTTCAT+TGG | - | tig0006226:23330-23349 | Msa1343110:CDS | 30.0% |
| ! | TTCTGTGTTGTGTTTTCATT+GGG | - | tig0006226:23331-23350 | Msa1343110:CDS | 30.0% |
| TCACCATACAAAGATTCTTT+GGG | + | tig0006226:23469-23488 | Msa1343110:intergenic | 30.0% | |
| ! | TCAATTTTTACCAAACACGT+GGG | + | tig0006226:23796-23815 | Msa1343110:intergenic | 30.0% |
| ! | ATCAATTTTTACCAAACACG+TGG | + | tig0006226:23797-23816 | Msa1343110:intergenic | 30.0% |
| GATGAATCTAACATTCTCAT+GGG | + | tig0006226:23915-23934 | Msa1343110:intergenic | 30.0% | |
| AACAAACACACCCTTAAAAA+TGG | - | tig0006226:24087-24106 | Msa1343110:CDS | 30.0% | |
| !!! | TTTTTTTTCCATGCTTGTTG+TGG | + | tig0006226:24437-24456 | Msa1343110:intergenic | 30.0% |
| ! | TTTTTGCTGCAAGTTAGAAA+TGG | + | tig0006226:24946-24965 | Msa1343110:intergenic | 30.0% |
| ! | CTAATGAACAAGTTGAAACA+TGG | + | tig0006226:24994-25013 | Msa1343110:intergenic | 30.0% |
| ! | CATGTTTCAACTTGTTCATT+AGG | - | tig0006226:24992-25011 | Msa1343110:intron | 30.0% |
| TTGTATCTATGAGGAACATT+TGG | + | tig0006226:25237-25256 | Msa1343110:intergenic | 30.0% | |
| AATGTTCCTCATAGATACAA+AGG | - | tig0006226:25237-25256 | Msa1343110:intron | 30.0% | |
| ATCAAATGTGATTACAGCTT+AGG | - | tig0006226:25380-25399 | Msa1343110:CDS | 30.0% | |
| TCAAATGTGATTACAGCTTA+GGG | - | tig0006226:25381-25400 | Msa1343110:CDS | 30.0% | |
| CAATCTACGATAAGAACATA+AGG | + | tig0006226:25430-25449 | Msa1343110:intergenic | 30.0% | |
| ! | AAAAAAGCACATGGATTGTT+TGG | + | tig0006226:25482-25501 | Msa1343110:intergenic | 30.0% |
| CTAATGTTGTGAAACATTTG+TGG | + | tig0006226:25547-25566 | Msa1343110:intergenic | 30.0% | |
| ACATATATAATAGTGAGGCT+AGG | - | tig0006226:25575-25594 | Msa1343110:intron | 30.0% | |
| GACAAAGACACAAAAATGAA+TGG | + | tig0006226:25649-25668 | Msa1343110:intergenic | 30.0% | |
| TTCTATTAGACAATGTGGAA+AGG | - | tig0006226:25699-25718 | Msa1343110:CDS | 30.0% | |
| !!! | CTATTTGTACCTTTTTGGTT+TGG | + | tig0006226:25801-25820 | Msa1343110:intergenic | 30.0% |
| !! | TGATGCTATTTGTACCTTTT+TGG | + | tig0006226:25806-25825 | Msa1343110:intergenic | 30.0% |
| !!! | GCAACATTTTAAAACATAGG+GGG | + | tig0006226:25892-25911 | Msa1343110:intergenic | 30.0% |
| !!! | CGCAACATTTTAAAACATAG+GGG | + | tig0006226:25893-25912 | Msa1343110:intergenic | 30.0% |
| !! | TTGCCATTTCTTTTAATAGG+GGG | + | tig0006226:25923-25942 | Msa1343110:intergenic | 30.0% |
| TCATATTTCCCTTATGTTAG+GGG | + | tig0006226:25984-26003 | Msa1343110:intergenic | 30.0% | |
| GATCATATTTCCCTTATGTT+AGG | + | tig0006226:25986-26005 | Msa1343110:intergenic | 30.0% | |
| !! | AACTTTTTGAGAAGATAAGG+GGG | + | tig0006226:26014-26033 | Msa1343110:intergenic | 30.0% |
| !! | CAACTTTTTGAGAAGATAAG+GGG | + | tig0006226:26015-26034 | Msa1343110:intergenic | 30.0% |
| !! | GCAACTTTTTGAGAAGATAA+GGG | + | tig0006226:26016-26035 | Msa1343110:intergenic | 30.0% |
| TTCTCAAAAAGTTGCGATTA+TGG | - | tig0006226:26021-26040 | Msa1343110:intron | 30.0% | |
| AATGAGTGTCCTAAGATTAT+TGG | + | tig0006226:26217-26236 | Msa1343110:intergenic | 30.0% | |
| TGACGGAGACAATATATATA+TGG | - | tig0006226:26312-26331 | Msa1343110:intron | 30.0% | |
| TATGGAATTTATAATGGCAG+GGG | - | tig0006226:26330-26349 | Msa1343110:intron | 30.0% | |
| CTATGAGAGAAACACAAATT+GGG | - | tig0006226:26498-26517 | Msa1343110:intron | 30.0% | |
| TATGAGAGAAACACAAATTG+GGG | - | tig0006226:26499-26518 | Msa1343110:intron | 30.0% | |
| AAATATCGAAATTGTTAGGC+CGG | + | tig0006226:26598-26617 | Msa1343110:intergenic | 30.0% | |
| ! | TTAACTTGATTGATATCCAC+AGG | - | tig0006226:26688-26707 | Msa1343110:intron | 30.0% |
| !!! | TGGTATTTTTGGGTAAAGAT+AGG | + | tig0006226:26789-26808 | Msa1343110:intergenic | 30.0% |
| ! | CCAAGAAACATGGTATTTTT+GGG | + | tig0006226:26799-26818 | Msa1343110:intergenic | 30.0% |
| CCAAAAATACCATGTTTCTT+GGG | - | tig0006226:26797-26816 | Msa1343110:intron | 30.0% | |
| !! | AATGAGTCAGTTGATAAAGT+GGG | - | tig0006226:26847-26866 | Msa1343110:intron | 30.0% |
| GGTGTATGGAATAACATATA+GGG | + | tig0006226:26981-27000 | Msa1343110:intergenic | 30.0% | |
| ! | TTTCTTACCTTTGGAAATAC+AGG | + | tig0006226:27046-27065 | Msa1343110:intergenic | 30.0% |
| GTATTTCCAAAGGTAAGAAA+TGG | - | tig0006226:27046-27065 | Msa1343110:intron | 30.0% | |
| ATAAGTCAATTCAAACAGGA+CGG | - | tig0006226:27111-27130 | Msa1343110:intron | 30.0% | |
| TTTATCGAGGTAATTACAAC+TGG | - | tig0006226:27229-27248 | Msa1343110:intron | 30.0% | |
| AATGCGATTGTAACATCAAT+CGG | - | tig0006226:27286-27305 | Msa1343110:intron | 30.0% | |
| GAAGCAACAAAAAAATGGTT+TGG | - | tig0006226:27328-27347 | Msa1343110:intron | 30.0% | |
| AGTATGAGTAACACAATCAT+TGG | + | tig0006226:27463-27482 | Msa1343110:intergenic | 30.0% | |
| AATATTGTTTGCTTCTTTGG+TGG | - | tig0006226:27484-27503 | Msa1343110:exon | 30.0% | |
| !! | AGGGATTTTGATGAAATGTT+TGG | - | tig0006226:27529-27548 | Msa1343110:five_prime_UTR | 30.0% |
| GAGCCATTACATAACTAATA+AGG | + | tig0006226:27564-27583 | Msa1343110:intergenic | 30.0% | |
| ATAACTATGAAAACAAAGGG+TGG | - | tig0006226:27610-27629 | Msa1343110:five_prime_UTR | 30.0% | |
| TAACTATGAAAACAAAGGGT+GGG | - | tig0006226:27611-27630 | Msa1343110:five_prime_UTR | 30.0% | |
| CAACCCAAAGAATCTTTGTA+TGG | - | tig0006226:23463-23482 | Msa1343110:CDS | 35.0% | |
| GTCACCATACAAAGATTCTT+TGG | + | tig0006226:23470-23489 | Msa1343110:intergenic | 35.0% | |
| ! | GAAATAAATGTGACTTGTCG+TGG | - | tig0006226:23863-23882 | Msa1343110:intron | 35.0% |
| GGATGAATCTAACATTCTCA+TGG | + | tig0006226:23916-23935 | Msa1343110:intergenic | 35.0% | |
| ! | GCTTTGCAATCTCACATTTT+CGG | - | tig0006226:24043-24062 | Msa1343110:CDS | 35.0% |
| TAGATCCCTATCAATAGCTT+GGG | - | tig0006226:24202-24221 | Msa1343110:intron | 35.0% | |
| TGTTACCCAAGCTATTGATA+GGG | + | tig0006226:24210-24229 | Msa1343110:intergenic | 35.0% | |
| GATGAAGGAGGAAAAAAAGA+AGG | + | tig0006226:24386-24405 | Msa1343110:intergenic | 35.0% | |
| GCCCTAAAAGACATTGTTTA+AGG | - | tig0006226:24767-24786 | Msa1343110:intron | 35.0% | |
| !! | ATTTTGATGAGGTCCATCTT+TGG | - | tig0006226:24919-24938 | Msa1343110:intron | 35.0% |
| AGTTAGAAATGGTCCAAAGA+TGG | + | tig0006226:24935-24954 | Msa1343110:intergenic | 35.0% | |
| ATCAAACTTCATCTTTGGTG+AGG | + | tig0006226:24969-24988 | Msa1343110:intergenic | 35.0% | |
| TGGTCATCAAACTTCATCTT+TGG | + | tig0006226:24974-24993 | Msa1343110:intergenic | 35.0% | |
| GAAGATCATTAACGACCAAA+AGG | - | tig0006226:25173-25192 | Msa1343110:CDS | 35.0% | |
| ! | AGGATCAAGAAAAAAGCACA+TGG | + | tig0006226:25491-25510 | Msa1343110:intergenic | 35.0% |
| TGTGAAACATTTGTGGGAAT+TGG | + | tig0006226:25540-25559 | Msa1343110:intergenic | 35.0% | |
| TTAGACAATGTGGAAAGGAA+TGG | - | tig0006226:25704-25723 | Msa1343110:CDS | 35.0% | |
| ! | AGTAGAAGTGCATTACTCTT+TGG | - | tig0006226:25771-25790 | Msa1343110:intron | 35.0% |
| TTTGGAAGTCCAAACCAAAA+AGG | - | tig0006226:25789-25808 | Msa1343110:intron | 35.0% | |
| GAATTCTAACAAATGACCTG+AGG | - | tig0006226:25838-25857 | Msa1343110:intron | 35.0% | |
| AGCATATTTCCCTAAACATG+GGG | + | tig0006226:25952-25971 | Msa1343110:intergenic | 35.0% | |
| GAGCATATTTCCCTAAACAT+GGG | + | tig0006226:25953-25972 | Msa1343110:intergenic | 35.0% | |
| AGAGCATATTTCCCTAAACA+TGG | + | tig0006226:25954-25973 | Msa1343110:intergenic | 35.0% | |
| ATATTTCCCTTATGTTAGGG+GGG | + | tig0006226:25982-26001 | Msa1343110:intergenic | 35.0% | |
| CATATTTCCCTTATGTTAGG+GGG | + | tig0006226:25983-26002 | Msa1343110:intergenic | 35.0% | |
| !! | CGCAACTTTTTGAGAAGATA+AGG | + | tig0006226:26017-26036 | Msa1343110:intergenic | 35.0% |
| !!! | ATCGCAACATTTTGAAACTG+AGG | - | tig0006226:26129-26148 | Msa1343110:intron | 35.0% |
| !!! | TCGCAACATTTTGAAACTGA+GGG | - | tig0006226:26130-26149 | Msa1343110:intron | 35.0% |
| CTTGATGCTCAAAACAACTT+TGG | - | tig0006226:26361-26380 | Msa1343110:intron | 35.0% | |
| ! | TTTACAAGAAGCATGTGAAG+TGG | - | tig0006226:26465-26484 | Msa1343110:intron | 35.0% |
| CCAATTTGTGTTTCTCTCAT+AGG | + | tig0006226:26500-26519 | Msa1343110:intergenic | 35.0% | |
| CCTATGAGAGAAACACAAAT+TGG | - | tig0006226:26497-26516 | Msa1343110:intron | 35.0% | |
| AAACACAAATTGGGGTAATG+AGG | - | tig0006226:26507-26526 | Msa1343110:intron | 35.0% | |
| ATTAGGGTAATGAGTAACCT+AGG | - | tig0006226:26550-26569 | Msa1343110:intron | 35.0% | |
| TTAGGGTAATGAGTAACCTA+GGG | - | tig0006226:26551-26570 | Msa1343110:intron | 35.0% | |
| !! | ATATTTTTGCCAGTTGAGCT+AGG | - | tig0006226:26612-26631 | Msa1343110:intron | 35.0% |
| !! | AAACTTGAGAGTACCATTAC+TGG | - | tig0006226:26731-26750 | Msa1343110:intron | 35.0% |
| CCCAAAAATACCATGTTTCT+TGG | - | tig0006226:26796-26815 | Msa1343110:intron | 35.0% | |
| ! | CCCAAGAAACATGGTATTTT+TGG | + | tig0006226:26800-26819 | Msa1343110:intergenic | 35.0% |
| ATTCCTTCTTTCACGTTAGT+TGG | + | tig0006226:26830-26849 | Msa1343110:intergenic | 35.0% | |
| !! | GAATGAGTCAGTTGATAAAG+TGG | - | tig0006226:26846-26865 | Msa1343110:intron | 35.0% |
| CTTGAAAGTCCATAAGTGAA+TGG | + | tig0006226:26911-26930 | Msa1343110:intergenic | 35.0% | |
| TAAGCTTGACAAGTGACAAA+AGG | + | tig0006226:26957-26976 | Msa1343110:intergenic | 35.0% | |
| GGGTGTATGGAATAACATAT+AGG | + | tig0006226:26982-27001 | Msa1343110:intergenic | 35.0% | |
| GTTATTCCATACACCCTATA+TGG | - | tig0006226:26986-27005 | Msa1343110:intron | 35.0% | |
| ACAATTCCATATAGGGTGTA+TGG | + | tig0006226:26995-27014 | Msa1343110:intergenic | 35.0% | |
| CTGAGGAACAATTCCATATA+GGG | + | tig0006226:27002-27021 | Msa1343110:intergenic | 35.0% | |
| TCTGAGGAACAATTCCATAT+AGG | + | tig0006226:27003-27022 | Msa1343110:intergenic | 35.0% | |
| AGGAATACCTGTATTTCCAA+AGG | - | tig0006226:27036-27055 | Msa1343110:intron | 35.0% | |
| GATAAAATGCTGAATCTGAC+TGG | + | tig0006226:27215-27234 | Msa1343110:intergenic | 35.0% | |
| ! | TCAGATTCAGCATTTTATCG+AGG | - | tig0006226:27216-27235 | Msa1343110:intron | 35.0% |
| ATGCGATTGTAACATCAATC+GGG | - | tig0006226:27287-27306 | Msa1343110:intron | 35.0% | |
| !! | AAAATGGTTTGGGTTGAACA+AGG | - | tig0006226:27339-27358 | Msa1343110:intron | 35.0% |
| TACGCAAAAGAAATATGAGC+AGG | - | tig0006226:27399-27418 | Msa1343110:intron | 35.0% | |
| ACGCAAAAGAAATATGAGCA+GGG | - | tig0006226:27400-27419 | Msa1343110:intron | 35.0% | |
| AAAAGAAATATGAGCAGGGT+AGG | - | tig0006226:27404-27423 | Msa1343110:intron | 35.0% | |
| ! | TTTGCTTCTTTGGTGGTTTA+TGG | - | tig0006226:27491-27510 | Msa1343110:exon | 35.0% |
| TCTAAGCTATCCTATTCTAG+AGG | - | tig0006226:27582-27601 | Msa1343110:five_prime_UTR | 35.0% | |
| CTAAGCTATCCTATTCTAGA+GGG | - | tig0006226:27583-27602 | Msa1343110:five_prime_UTR | 35.0% | |
| ! | TAAGCTATCCTATTCTAGAG+GGG | - | tig0006226:27584-27603 | Msa1343110:five_prime_UTR | 35.0% |
| !! | GTTATAATCCCCTCTAGAAT+AGG | + | tig0006226:27595-27614 | Msa1343110:intergenic | 35.0% |
| !!! | TGTACCTTTTTGGGATGATC+AGG | - | tig0006226:23295-23314 | Msa1343110:CDS | 40.0% |
| ACAACCTGATCATCCCAAAA+AGG | + | tig0006226:23302-23321 | Msa1343110:intergenic | 40.0% | |
| ! | TGTTGTGTTTTCATTGGGTC+AGG | - | tig0006226:23336-23355 | Msa1343110:CDS | 40.0% |
| TGGTGACTGATAGACATTCT+CGG | - | tig0006226:23483-23502 | Msa1343110:CDS | 40.0% | |
| TGATAGACATTCTCGGATTG+AGG | - | tig0006226:23490-23509 | Msa1343110:CDS | 40.0% | |
| ATTAGTCAGTTAAGCCGTGT+GGG | + | tig0006226:23518-23537 | Msa1343110:intergenic | 40.0% | |
| ! | TTAAGGGTGTGTTTGTTTCG+AGG | + | tig0006226:24084-24103 | Msa1343110:intergenic | 40.0% |
| TCTATGTCAACAAGAGTCTC+TGG | + | tig0006226:24141-24160 | Msa1343110:intergenic | 40.0% | |
| CAAGCTATTGATAGGGATCT+AGG | + | tig0006226:24203-24222 | Msa1343110:intergenic | 40.0% | |
| CTAGATCCCTATCAATAGCT+TGG | - | tig0006226:24201-24220 | Msa1343110:intron | 40.0% | |
| GTGTTACCCAAGCTATTGAT+AGG | + | tig0006226:24211-24230 | Msa1343110:intergenic | 40.0% | |
| TTGGATGTAAGAGATGAAGG+AGG | + | tig0006226:24398-24417 | Msa1343110:intergenic | 40.0% | |
| CCTTCATCTCTTACATCCAA+CGG | - | tig0006226:24398-24417 | Msa1343110:intron | 40.0% | |
| TTCTTTGAGCCATCTTGATC+AGG | - | tig0006226:24475-24494 | Msa1343110:CDS | 40.0% | |
| TCTTTGAGCCATCTTGATCA+GGG | - | tig0006226:24476-24495 | Msa1343110:CDS | 40.0% | |
| ATCAGGGCCCTAAAAGATTA+TGG | - | tig0006226:24492-24511 | Msa1343110:CDS | 40.0% | |
| AGGTCATCTAATATGGACTC+TGG | - | tig0006226:24536-24555 | Msa1343110:CDS | 40.0% | |
| GGTCATCTAATATGGACTCT+GGG | - | tig0006226:24537-24556 | Msa1343110:CDS | 40.0% | |
| CGAGAAACATAAACAACCAG+TGG | + | tig0006226:25204-25223 | Msa1343110:intergenic | 40.0% | |
| GTTCCTCATAGATACAAAGG+AGG | - | tig0006226:25240-25259 | Msa1343110:intron | 40.0% | |
| ! | TGATTACAGCTTAGGGTATC+AGG | - | tig0006226:25388-25407 | Msa1343110:CDS | 40.0% |
| ! | GATTACAGCTTAGGGTATCA+GGG | - | tig0006226:25389-25408 | Msa1343110:CDS | 40.0% |
| GCAAGATCTTGAGAGATTTG+AGG | + | tig0006226:25511-25530 | Msa1343110:intergenic | 40.0% | |
| ! | TGAGGCTAGGAATGCTTTTA+CGG | - | tig0006226:25588-25607 | Msa1343110:intron | 40.0% |
| ACAATGTGGAAAGGAATGGA+TGG | - | tig0006226:25708-25727 | Msa1343110:CDS | 40.0% | |
| CAATGTGGAAAGGAATGGAT+GGG | - | tig0006226:25709-25728 | Msa1343110:CDS | 40.0% | |
| !! | AAAGGAATGGATGGGTTAAG+AGG | - | tig0006226:25717-25736 | Msa1343110:CDS | 40.0% |
| TGGCCCCCTATTAAAAGAAA+TGG | - | tig0006226:25917-25936 | Msa1343110:intron | 40.0% | |
| CAAAAGTGACCCCATGTTTA+GGG | - | tig0006226:25940-25959 | Msa1343110:intron | 40.0% | |
| ! | TTTTGACCCCCCTAACATAA+GGG | - | tig0006226:25973-25992 | Msa1343110:intron | 40.0% |
| ! | TGGTGTCTTCTCAGCAATTT+TGG | - | tig0006226:26062-26081 | Msa1343110:intron | 40.0% |
| ! | GGTGTCTTCTCAGCAATTTT+GGG | - | tig0006226:26063-26082 | Msa1343110:intron | 40.0% |
| !!! | TCAGCAATTTTGGGACGAAA+GGG | - | tig0006226:26072-26091 | Msa1343110:intron | 40.0% |
| !!! | CGCAACATTTTGAAACTGAG+GGG | - | tig0006226:26131-26150 | Msa1343110:intron | 40.0% |
| !!! | GCAACATTTTGAAACTGAGG+GGG | - | tig0006226:26132-26151 | Msa1343110:intron | 40.0% |
| GAATCACTGAAAGCAATACG+TGG | - | tig0006226:26403-26422 | Msa1343110:intron | 40.0% | |
| CTTGATTGATATCCACAGGT+AGG | - | tig0006226:26692-26711 | Msa1343110:intron | 40.0% | |
| ATGAAGGAGATAGCCAGTAA+TGG | + | tig0006226:26747-26766 | Msa1343110:intergenic | 40.0% | |
| ATCTCCTTCATTGTAGAGGT+TGG | - | tig0006226:26756-26775 | Msa1343110:intron | 40.0% | |
| ATCTCCAACCTCTACAATGA+AGG | + | tig0006226:26763-26782 | Msa1343110:intergenic | 40.0% | |
| CCTTTCAAGAAGCAAATCTG+AGG | + | tig0006226:27019-27038 | Msa1343110:intergenic | 40.0% | |
| ! | CCTCAGATTTGCTTCTTGAA+AGG | - | tig0006226:27016-27035 | Msa1343110:intron | 40.0% |
| ATCGAGGTAATTACAACTGG+TGG | - | tig0006226:27232-27251 | Msa1343110:intron | 40.0% | |
| ! | CAGGGTAGGTTTAATTTCGA+TGG | - | tig0006226:27418-27437 | Msa1343110:CDS | 40.0% |
| TATGGAGACTACTCAATGTG+AGG | - | tig0006226:27509-27528 | Msa1343110:five_prime_UTR | 40.0% | |
| ATGGAGACTACTCAATGTGA+GGG | - | tig0006226:27510-27529 | Msa1343110:five_prime_UTR | 40.0% | |
| !! | TTGGGTTGCTTCCGAAGTTT+TGG | + | tig0006226:23451-23470 | Msa1343110:intergenic | 45.0% |
| ! | GATTAGTCAGTTAAGCCGTG+TGG | + | tig0006226:23519-23538 | Msa1343110:intergenic | 45.0% |
| AACACTTCTACCCACGTGTT+TGG | - | tig0006226:23783-23802 | Msa1343110:intron | 45.0% | |
| ! | GACTTGCTCAAAGAAGAGGT+GGG | + | tig0006226:24181-24200 | Msa1343110:intergenic | 45.0% |
| ! | CTAGGACTTGCTCAAAGAAG+AGG | + | tig0006226:24185-24204 | Msa1343110:intergenic | 45.0% |
| CTTCCTCAACACCATTGTGT+CGG | - | tig0006226:24321-24340 | Msa1343110:intron | 45.0% | |
| CCGTTGGATGTAAGAGATGA+AGG | + | tig0006226:24401-24420 | Msa1343110:intergenic | 45.0% | |
| TGGTTGAGCATCAAAACCGT+TGG | + | tig0006226:24417-24436 | Msa1343110:intergenic | 45.0% | |
| ATGCTCAACCACAACAAGCA+TGG | - | tig0006226:24426-24445 | Msa1343110:intron | 45.0% | |
| !!! | TTTTAGGGCCCTGATCAAGA+TGG | + | tig0006226:24487-24506 | Msa1343110:intergenic | 45.0% |
| ! | CAACCAGTGGCATTTCCTTT+TGG | + | tig0006226:25191-25210 | Msa1343110:intergenic | 45.0% |
| GCTCCTCCTTTGTATCTATG+AGG | + | tig0006226:25246-25265 | Msa1343110:intergenic | 45.0% | |
| GTATCAGGGCTAATCAGCAA+TGG | - | tig0006226:25403-25422 | Msa1343110:CDS | 45.0% | |
| GCAAAAGTGACCCCATGTTT+AGG | - | tig0006226:25939-25958 | Msa1343110:intron | 45.0% | |
| ! | CTTTTGACCCCCCTAACATA+AGG | - | tig0006226:25972-25991 | Msa1343110:intron | 45.0% |
| !!! | CTCAGCAATTTTGGGACGAA+AGG | - | tig0006226:26071-26090 | Msa1343110:intron | 45.0% |
| !!! | CAGCAATTTTGGGACGAAAG+GGG | - | tig0006226:26073-26092 | Msa1343110:intron | 45.0% |
| GCATAAGAGAATCCTACCTG+TGG | + | tig0006226:26707-26726 | Msa1343110:intergenic | 45.0% | |
| GGCTATCTCCTTCATTGTAG+AGG | - | tig0006226:26752-26771 | Msa1343110:intron | 45.0% | |
| GCTCCAACTAACGTGAAAGA+AGG | - | tig0006226:26824-26843 | Msa1343110:intron | 45.0% | |
| ! | GGACTTGCTCAAAGAAGAGG+TGG | + | tig0006226:24182-24201 | Msa1343110:intergenic | 50.0% |
| ! | CATCCGACACAATGGTGTTG+AGG | + | tig0006226:24327-24346 | Msa1343110:intergenic | 50.0% |
| CTCAACACCATTGTGTCGGA+TGG | - | tig0006226:24325-24344 | Msa1343110:intron | 50.0% | |
| ATTGGGACCATCCGACACAA+TGG | + | tig0006226:24335-24354 | Msa1343110:intergenic | 50.0% | |
| CGACCAAAAGGAAATGCCAC+TGG | - | tig0006226:25185-25204 | Msa1343110:CDS | 50.0% | |
| AGGAGGAGCTCTCAATACAC+TGG | - | tig0006226:25257-25276 | Msa1343110:intron | 50.0% | |
| !! | ATGGATGGGTTAAGAGGTCC+AGG | - | tig0006226:25723-25742 | Msa1343110:CDS | 50.0% |
| TTAAGAGGTCCAGGTCTCAC+TGG | - | tig0006226:25732-25751 | Msa1343110:intron | 50.0% | |
| ! | TGCGATTATGGCCCCTGTTT+TGG | - | tig0006226:26033-26052 | Msa1343110:intron | 50.0% |
| ! | GCGATTATGGCCCCTGTTTT+GGG | - | tig0006226:26034-26053 | Msa1343110:intron | 50.0% |
| ACACCACGTGTCCCAAAACA+GGG | + | tig0006226:26048-26067 | Msa1343110:intergenic | 50.0% | |
| GTAACCTAGGGTTCGAACTC+CGG | - | tig0006226:26563-26582 | Msa1343110:intron | 50.0% | |
| CTCATGAGTCCTAGCTCAAC+TGG | + | tig0006226:26624-26643 | Msa1343110:intergenic | 50.0% | |
| GGAGCACATCCCAAGAAACA+TGG | + | tig0006226:26809-26828 | Msa1343110:intergenic | 50.0% | |
| TGTTACAGGTTACGGAGCCT+TGG | - | tig0006226:27161-27180 | Msa1343110:intron | 50.0% | |
| ! | CTCGGATTGAGGTACCCACA+CGG | - | tig0006226:23501-23520 | Msa1343110:CDS | 55.0% |
| TTTCCACTGCCAGTGAGACC+TGG | + | tig0006226:25744-25763 | Msa1343110:intergenic | 55.0% | |
| CACCACGTGTCCCAAAACAG+GGG | + | tig0006226:26047-26066 | Msa1343110:intergenic | 55.0% | |
| GACACCACGTGTCCCAAAAC+AGG | + | tig0006226:26049-26068 | Msa1343110:intergenic | 55.0% | |
| ATGACCGGAGTTCGAACCCT+AGG | + | tig0006226:26570-26589 | Msa1343110:intergenic | 55.0% | |
| CTGGTGGCTCATCGACACAT+TGG | - | tig0006226:27248-27267 | Msa1343110:intron | 55.0% | |
| GTGGCTCATCGACACATTGG+TGG | - | tig0006226:27251-27270 | Msa1343110:intron | 55.0% | |
| CGAACTCCGGTCATGACGTC+CGG | - | tig0006226:26576-26595 | Msa1343110:intron | 60.0% | |
| GTTAGGCCGGACGTCATGAC+CGG | + | tig0006226:26585-26604 | Msa1343110:intergenic | 60.0% | |
| CGATGGTGCAGCGTTGCTCA+TGG | - | tig0006226:27435-27454 | Msa1343110:CDS | 60.0% | |
| GGTCCAGGTCTCACTGGCAG+TGG | - | tig0006226:25738-25757 | Msa1343110:intron | 65.0% | |
| !!! | GGCCCCTGTTTTGGGACACG+TGG | - | tig0006226:26042-26061 | Msa1343110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006226 | gene | 23289 | 27636 | 23289 | ID=Msa1343110;Name=Msa1343110 |
| tig0006226 | mRNA | 23289 | 27636 | 23289 | ID=Msa1343110-mRNA-1;Parent=Msa1343110;Name=Msa1343110-mRNA-1;_AED=0.18;_eAED=0.19;_QI=145|0.5|0.42|1|0.5|0.71|7|0|417 |
| tig0006226 | exon | 23289 | 23705 | 23289 | ID=Msa1343110-mRNA-1:exon:3977;Parent=Msa1343110-mRNA-1 |
| tig0006226 | exon | 23940 | 24185 | 23940 | ID=Msa1343110-mRNA-1:exon:3976;Parent=Msa1343110-mRNA-1 |
| tig0006226 | exon | 24466 | 24575 | 24466 | ID=Msa1343110-mRNA-1:exon:3975;Parent=Msa1343110-mRNA-1 |
| tig0006226 | exon | 25130 | 25217 | 25130 | ID=Msa1343110-mRNA-1:exon:3974;Parent=Msa1343110-mRNA-1 |
| tig0006226 | exon | 25316 | 25528 | 25316 | ID=Msa1343110-mRNA-1:exon:3973;Parent=Msa1343110-mRNA-1 |
| tig0006226 | exon | 25647 | 25748 | 25647 | ID=Msa1343110-mRNA-1:exon:3972;Parent=Msa1343110-mRNA-1 |
| tig0006226 | exon | 27414 | 27636 | 27414 | ID=Msa1343110-mRNA-1:exon:3971;Parent=Msa1343110-mRNA-1 |
| tig0006226 | five_prime_UTR | 27492 | 27636 | 27492 | ID=Msa1343110-mRNA-1:five_prime_utr;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 27414 | 27491 | 27414 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 25647 | 25748 | 25647 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 25316 | 25528 | 25316 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 25130 | 25217 | 25130 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 24466 | 24575 | 24466 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 23940 | 24185 | 23940 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| tig0006226 | CDS | 23289 | 23705 | 23289 | ID=Msa1343110-mRNA-1:cds;Parent=Msa1343110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
