Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353500 | XP_003595051.1 | 80.444 | 496 | 18 | 3 | 1 | 417 | 197 | 692 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353500 | sp|Q570S7|CSLG1_ARATH | 31.749 | 463 | 245 | 10 | 21 | 416 | 248 | 706 | 2.49e-65 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353500 | G7INL0 | 80.444 | 496 | 18 | 3 | 1 | 417 | 197 | 692 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208410 | Msa1353500 | 0.833122 | 6.392072e-56 | -8.615850e-47 |
| Msa0208430 | Msa1353500 | 0.830639 | 2.621736e-55 | -8.615850e-47 |
| Msa0209200 | Msa1353500 | 0.821786 | 3.355578e-53 | -8.615850e-47 |
| Msa1343110 | Msa1353500 | 0.996029 | 1.399255e-222 | -8.615850e-47 |
| Msa0249810 | Msa1353500 | 0.841634 | 4.219100e-58 | -8.615850e-47 |
| Msa0283190 | Msa1353500 | 0.947935 | 2.545073e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353500 | MtrunA17_Chr2g0298581 | 80.444 | 496 | 18 | 3 | 1 | 417 | 197 | 692 | 0.0 | 793 |
| Msa1353500 | MtrunA17_Chr2g0307191 | 69.153 | 496 | 74 | 3 | 1 | 417 | 197 | 692 | 0.0 | 684 |
| Msa1353500 | MtrunA17_Chr3g0095791 | 67.742 | 496 | 81 | 3 | 1 | 417 | 196 | 691 | 0.0 | 681 |
| Msa1353500 | MtrunA17_Chr3g0077511 | 61.245 | 498 | 112 | 4 | 1 | 417 | 197 | 694 | 0.0 | 603 |
| Msa1353500 | MtrunA17_Chr4g0046401 | 37.060 | 483 | 220 | 7 | 18 | 416 | 231 | 713 | 3.87e-100 | 314 |
| Msa1353500 | MtrunA17_Chr1g0186381 | 34.990 | 483 | 219 | 9 | 23 | 416 | 236 | 712 | 3.33e-92 | 293 |
| Msa1353500 | MtrunA17_Chr3g0102531 | 28.825 | 451 | 253 | 7 | 34 | 416 | 257 | 707 | 1.49e-54 | 192 |
| Msa1353500 | MtrunA17_Chr3g0102541 | 27.391 | 460 | 261 | 6 | 29 | 416 | 253 | 711 | 4.97e-53 | 188 |
| Msa1353500 | MtrunA17_Chr3g0102551 | 27.171 | 449 | 260 | 9 | 34 | 416 | 268 | 715 | 1.77e-49 | 179 |
| Msa1353500 | MtrunA17_Chr8g0364641 | 27.969 | 522 | 242 | 16 | 20 | 415 | 426 | 939 | 6.36e-48 | 175 |
| Msa1353500 | MtrunA17_Chr2g0307231 | 76.923 | 91 | 16 | 1 | 112 | 197 | 1 | 91 | 2.66e-42 | 144 |
| Msa1353500 | MtrunA17_Chr4g0025201 | 24.691 | 486 | 269 | 14 | 19 | 409 | 227 | 710 | 1.82e-38 | 147 |
| Msa1353500 | MtrunA17_Chr2g0322361 | 26.824 | 425 | 215 | 10 | 34 | 366 | 253 | 673 | 2.84e-38 | 147 |
| Msa1353500 | MtrunA17_Chr2g0322371 | 26.316 | 494 | 261 | 14 | 20 | 416 | 227 | 714 | 4.06e-37 | 143 |
| Msa1353500 | MtrunA17_Chr2g0322351 | 25.336 | 521 | 274 | 19 | 1 | 416 | 201 | 711 | 7.19e-36 | 140 |
| Msa1353500 | MtrunA17_Chr2g0296991 | 44.361 | 133 | 73 | 1 | 30 | 162 | 461 | 592 | 4.68e-33 | 132 |
| Msa1353500 | MtrunA17_Chr2g0296991 | 24.242 | 264 | 150 | 7 | 197 | 415 | 744 | 1002 | 1.74e-17 | 85.1 |
| Msa1353500 | MtrunA17_Chr1g0201731 | 45.865 | 133 | 71 | 1 | 30 | 162 | 530 | 661 | 1.76e-31 | 127 |
| Msa1353500 | MtrunA17_Chr1g0201731 | 26.538 | 260 | 139 | 9 | 197 | 410 | 797 | 1050 | 2.59e-11 | 65.9 |
| Msa1353500 | MtrunA17_Chr2g0284211 | 44.800 | 125 | 69 | 0 | 33 | 157 | 423 | 547 | 2.11e-31 | 127 |
| Msa1353500 | MtrunA17_Chr2g0284211 | 24.906 | 265 | 148 | 7 | 197 | 415 | 676 | 935 | 9.35e-15 | 76.6 |
| Msa1353500 | MtrunA17_Chr8g0383701 | 45.385 | 130 | 70 | 1 | 33 | 162 | 531 | 659 | 2.44e-31 | 127 |
| Msa1353500 | MtrunA17_Chr8g0383701 | 25.758 | 264 | 146 | 7 | 197 | 415 | 796 | 1054 | 1.37e-17 | 85.5 |
| Msa1353500 | MtrunA17_Chr3g0088821 | 42.857 | 133 | 75 | 1 | 30 | 162 | 510 | 641 | 2.54e-31 | 127 |
| Msa1353500 | MtrunA17_Chr3g0088821 | 26.136 | 264 | 146 | 8 | 197 | 415 | 777 | 1036 | 1.06e-17 | 85.9 |
| Msa1353500 | MtrunA17_Chr8g0379241 | 42.188 | 128 | 74 | 0 | 30 | 157 | 435 | 562 | 3.00e-31 | 126 |
| Msa1353500 | MtrunA17_Chr8g0379241 | 24.906 | 265 | 148 | 8 | 197 | 415 | 688 | 947 | 9.39e-15 | 76.6 |
| Msa1353500 | MtrunA17_Chr8g0352231 | 42.969 | 128 | 73 | 0 | 30 | 157 | 510 | 637 | 7.39e-31 | 125 |
| Msa1353500 | MtrunA17_Chr8g0352231 | 22.989 | 348 | 184 | 9 | 144 | 415 | 697 | 1036 | 5.78e-18 | 86.7 |
| Msa1353500 | MtrunA17_Chr7g0267731 | 42.969 | 128 | 73 | 0 | 30 | 157 | 422 | 549 | 2.35e-30 | 124 |
| Msa1353500 | MtrunA17_Chr7g0267731 | 23.308 | 266 | 151 | 8 | 197 | 415 | 685 | 944 | 5.65e-16 | 80.5 |
| Msa1353500 | MtrunA17_Chr3g0137951 | 40.116 | 172 | 98 | 3 | 1 | 169 | 489 | 658 | 6.28e-30 | 122 |
| Msa1353500 | MtrunA17_Chr3g0137951 | 25.769 | 260 | 142 | 9 | 197 | 410 | 785 | 1039 | 4.60e-16 | 80.9 |
| Msa1353500 | MtrunA17_Chr4g0073711 | 41.860 | 129 | 75 | 0 | 29 | 157 | 489 | 617 | 1.59e-29 | 121 |
| Msa1353500 | MtrunA17_Chr4g0073711 | 25.279 | 269 | 142 | 8 | 197 | 415 | 737 | 996 | 4.22e-17 | 84.0 |
| Msa1353500 | MtrunA17_Chr3g0078671 | 42.857 | 133 | 75 | 1 | 30 | 162 | 477 | 608 | 2.36e-28 | 118 |
| Msa1353500 | MtrunA17_Chr3g0078671 | 24.324 | 259 | 148 | 9 | 197 | 409 | 745 | 1001 | 3.76e-14 | 74.7 |
| Msa1353500 | MtrunA17_Chr1g0183381 | 42.636 | 129 | 74 | 0 | 29 | 157 | 361 | 489 | 2.02e-27 | 115 |
| Msa1353500 | MtrunA17_Chr1g0183381 | 23.485 | 264 | 151 | 8 | 197 | 415 | 605 | 862 | 2.24e-14 | 75.5 |
| Msa1353500 | MtrunA17_Chr7g0269741 | 33.178 | 214 | 126 | 4 | 19 | 220 | 596 | 804 | 2.36e-26 | 112 |
| Msa1353500 | MtrunA17_Chr7g0269741 | 22.814 | 263 | 157 | 8 | 197 | 415 | 871 | 1131 | 1.11e-11 | 67.0 |
| Msa1353500 | MtrunA17_Chr4g0039801 | 39.568 | 139 | 83 | 1 | 19 | 157 | 573 | 710 | 2.09e-25 | 109 |
| Msa1353500 | MtrunA17_Chr4g0039801 | 21.756 | 262 | 160 | 6 | 197 | 415 | 844 | 1103 | 2.71e-12 | 68.9 |
| Msa1353500 | MtrunA17_Chr1g0165421 | 39.098 | 133 | 80 | 1 | 25 | 157 | 563 | 694 | 2.46e-25 | 108 |
| Msa1353500 | MtrunA17_Chr1g0165421 | 24.427 | 262 | 153 | 6 | 197 | 415 | 833 | 1092 | 6.96e-13 | 70.9 |
| Msa1353500 | MtrunA17_Chr1g0165411 | 41.129 | 124 | 72 | 1 | 34 | 157 | 558 | 680 | 4.14e-25 | 108 |
| Msa1353500 | MtrunA17_Chr1g0165411 | 23.664 | 262 | 155 | 6 | 197 | 415 | 805 | 1064 | 6.15e-12 | 67.8 |
| Msa1353500 | MtrunA17_Chr5g0410641 | 39.516 | 124 | 74 | 1 | 34 | 157 | 567 | 689 | 1.05e-24 | 107 |
| Msa1353500 | MtrunA17_Chr5g0410641 | 22.433 | 263 | 157 | 9 | 197 | 415 | 823 | 1082 | 2.41e-12 | 68.9 |
| Msa1353500 | MtrunA17_Chr2g0297351 | 40.000 | 125 | 74 | 1 | 33 | 157 | 474 | 597 | 1.51e-23 | 103 |
| Msa1353500 | MtrunA17_Chr2g0297351 | 22.901 | 262 | 157 | 8 | 197 | 415 | 726 | 985 | 4.41e-13 | 71.2 |
| Msa1353500 | MtrunA17_Chr2g0322341 | 42.857 | 105 | 56 | 1 | 25 | 125 | 239 | 343 | 1.99e-23 | 100 |
| Msa1353500 | MtrunA17_Chr7g0274751 | 38.129 | 139 | 85 | 1 | 19 | 157 | 361 | 498 | 1.46e-22 | 100 |
| Msa1353500 | MtrunA17_Chr2g0307221 | 76.087 | 46 | 11 | 0 | 230 | 275 | 1 | 46 | 4.70e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353500 | AT4G24010.1 | 31.749 | 463 | 245 | 10 | 21 | 416 | 248 | 706 | 2.54e-66 | 225 |
| Msa1353500 | AT4G24000.2 | 30.000 | 460 | 249 | 10 | 21 | 410 | 42 | 498 | 1.37e-62 | 211 |
| Msa1353500 | AT4G24000.1 | 30.000 | 460 | 249 | 10 | 21 | 410 | 234 | 690 | 4.17e-61 | 211 |
| Msa1353500 | AT4G23990.2 | 30.735 | 449 | 243 | 9 | 28 | 410 | 59 | 505 | 4.78e-61 | 207 |
| Msa1353500 | AT4G23990.1 | 30.735 | 449 | 243 | 9 | 28 | 410 | 273 | 719 | 1.66e-59 | 207 |
| Msa1353500 | AT1G55850.1 | 27.692 | 455 | 265 | 8 | 25 | 416 | 252 | 705 | 1.79e-50 | 181 |
| Msa1353500 | AT2G32540.1 | 28.352 | 455 | 213 | 16 | 28 | 376 | 245 | 692 | 1.43e-43 | 162 |
| Msa1353500 | AT2G32530.1 | 28.508 | 449 | 210 | 14 | 31 | 374 | 248 | 690 | 5.05e-43 | 160 |
| Msa1353500 | AT4G15290.1 | 27.632 | 456 | 219 | 16 | 28 | 379 | 245 | 693 | 1.89e-38 | 147 |
| Msa1353500 | AT4G38190.1 | 24.805 | 512 | 260 | 13 | 25 | 415 | 560 | 1067 | 2.19e-38 | 148 |
| Msa1353500 | AT4G15320.3 | 27.133 | 457 | 221 | 14 | 28 | 379 | 245 | 694 | 2.15e-37 | 144 |
| Msa1353500 | AT4G15320.4 | 27.133 | 457 | 221 | 14 | 28 | 379 | 260 | 709 | 2.24e-37 | 144 |
| Msa1353500 | AT4G15320.5 | 27.133 | 457 | 221 | 14 | 28 | 379 | 245 | 694 | 2.27e-37 | 144 |
| Msa1353500 | AT2G32620.4 | 28.319 | 452 | 211 | 15 | 28 | 374 | 149 | 592 | 2.44e-37 | 144 |
| Msa1353500 | AT2G32620.1 | 28.319 | 452 | 211 | 15 | 28 | 374 | 245 | 688 | 5.42e-37 | 143 |
| Msa1353500 | AT2G32610.1 | 26.457 | 446 | 218 | 12 | 28 | 369 | 246 | 685 | 2.35e-35 | 139 |
| Msa1353500 | AT2G32620.2 | 32.581 | 310 | 145 | 9 | 28 | 284 | 245 | 543 | 2.66e-35 | 137 |
| Msa1353500 | AT2G32620.3 | 33.452 | 281 | 127 | 7 | 28 | 255 | 245 | 518 | 3.03e-34 | 134 |
| Msa1353500 | AT5G09870.1 | 47.656 | 128 | 67 | 0 | 30 | 157 | 503 | 630 | 9.31e-33 | 131 |
| Msa1353500 | AT5G09870.1 | 25.000 | 268 | 143 | 8 | 197 | 415 | 769 | 1027 | 2.78e-15 | 78.6 |
| Msa1353500 | AT5G64740.1 | 46.875 | 128 | 68 | 0 | 30 | 157 | 515 | 642 | 2.11e-32 | 130 |
| Msa1353500 | AT5G64740.1 | 24.254 | 268 | 145 | 8 | 197 | 415 | 784 | 1042 | 4.13e-14 | 75.1 |
| Msa1353500 | AT4G39350.1 | 46.875 | 128 | 68 | 0 | 30 | 157 | 516 | 643 | 5.56e-32 | 129 |
| Msa1353500 | AT4G39350.1 | 24.335 | 263 | 151 | 6 | 197 | 415 | 783 | 1041 | 1.47e-12 | 70.1 |
| Msa1353500 | AT2G21770.1 | 45.865 | 133 | 71 | 1 | 30 | 162 | 521 | 652 | 7.85e-32 | 129 |
| Msa1353500 | AT2G21770.1 | 23.385 | 325 | 179 | 10 | 152 | 415 | 730 | 1045 | 3.75e-15 | 78.2 |
| Msa1353500 | AT4G18780.1 | 45.600 | 125 | 68 | 0 | 33 | 157 | 426 | 550 | 9.30e-32 | 128 |
| Msa1353500 | AT4G18780.1 | 27.068 | 266 | 141 | 8 | 197 | 415 | 682 | 941 | 5.31e-16 | 80.9 |
| Msa1353500 | AT5G05170.1 | 44.000 | 125 | 70 | 0 | 33 | 157 | 501 | 625 | 6.68e-31 | 125 |
| Msa1353500 | AT5G05170.1 | 24.627 | 268 | 145 | 8 | 197 | 415 | 764 | 1023 | 2.75e-18 | 87.8 |
| Msa1353500 | AT5G17420.1 | 44.800 | 125 | 69 | 0 | 33 | 157 | 480 | 604 | 7.55e-31 | 125 |
| Msa1353500 | AT5G17420.1 | 26.038 | 265 | 145 | 8 | 197 | 415 | 725 | 984 | 4.48e-20 | 93.6 |
| Msa1353500 | AT2G25540.1 | 43.571 | 140 | 78 | 1 | 30 | 169 | 494 | 632 | 1.04e-30 | 125 |
| Msa1353500 | AT2G25540.1 | 24.621 | 264 | 150 | 8 | 197 | 415 | 759 | 1018 | 5.74e-15 | 77.8 |
| Msa1353500 | AT5G44030.3 | 43.750 | 128 | 72 | 0 | 30 | 157 | 175 | 302 | 1.36e-30 | 124 |
| Msa1353500 | AT5G44030.3 | 24.528 | 265 | 150 | 9 | 197 | 415 | 468 | 728 | 6.86e-15 | 77.4 |
| Msa1353500 | AT4G32410.1 | 43.571 | 140 | 78 | 1 | 30 | 169 | 514 | 652 | 1.92e-30 | 124 |
| Msa1353500 | AT4G32410.1 | 26.119 | 268 | 141 | 9 | 197 | 415 | 779 | 1038 | 5.70e-17 | 84.0 |
| Msa1353500 | AT5G44030.2 | 43.750 | 128 | 72 | 0 | 30 | 157 | 483 | 610 | 2.31e-30 | 124 |
| Msa1353500 | AT5G44030.2 | 24.528 | 265 | 150 | 9 | 197 | 415 | 776 | 1036 | 6.91e-15 | 77.4 |
| Msa1353500 | AT5G44030.1 | 43.750 | 128 | 72 | 0 | 30 | 157 | 454 | 581 | 2.91e-30 | 124 |
| Msa1353500 | AT5G44030.1 | 24.528 | 265 | 150 | 9 | 197 | 415 | 747 | 1007 | 6.90e-15 | 77.4 |
| Msa1353500 | AT4G15320.1 | 27.469 | 324 | 134 | 7 | 28 | 255 | 288 | 606 | 4.96e-27 | 114 |
| Msa1353500 | AT4G15320.2 | 27.469 | 324 | 134 | 7 | 28 | 255 | 245 | 563 | 6.04e-27 | 114 |
| Msa1353500 | AT1G02730.1 | 38.849 | 139 | 84 | 1 | 19 | 157 | 604 | 741 | 1.88e-25 | 109 |
| Msa1353500 | AT1G02730.1 | 22.137 | 262 | 160 | 7 | 197 | 415 | 883 | 1143 | 5.05e-11 | 65.5 |
| Msa1353500 | AT5G16910.1 | 39.850 | 133 | 79 | 1 | 25 | 157 | 585 | 716 | 1.28e-24 | 107 |
| Msa1353500 | AT5G16910.1 | 23.282 | 262 | 156 | 7 | 197 | 415 | 847 | 1106 | 2.85e-12 | 69.3 |
| Msa1353500 | AT3G03050.1 | 39.850 | 133 | 79 | 1 | 25 | 157 | 582 | 713 | 1.64e-24 | 107 |
| Msa1353500 | AT3G03050.1 | 22.433 | 263 | 157 | 6 | 197 | 415 | 847 | 1106 | 1.20e-12 | 70.5 |
| Msa1353500 | AT1G32180.1 | 39.516 | 124 | 74 | 1 | 34 | 157 | 428 | 550 | 5.80e-24 | 105 |
| Msa1353500 | AT1G32180.1 | 23.346 | 257 | 154 | 6 | 197 | 410 | 682 | 938 | 5.64e-13 | 71.6 |
| Msa1353500 | AT1G32180.2 | 39.516 | 124 | 74 | 1 | 34 | 157 | 428 | 550 | 5.80e-24 | 105 |
| Msa1353500 | AT1G32180.2 | 23.346 | 257 | 154 | 6 | 197 | 410 | 682 | 938 | 5.64e-13 | 71.6 |
| Msa1353500 | AT2G33100.2 | 38.710 | 124 | 75 | 1 | 34 | 157 | 482 | 604 | 7.13e-22 | 99.0 |
| Msa1353500 | AT2G33100.2 | 22.519 | 262 | 158 | 8 | 197 | 415 | 740 | 999 | 2.31e-11 | 66.2 |
| Msa1353500 | AT2G33100.1 | 38.710 | 124 | 75 | 1 | 34 | 157 | 482 | 604 | 7.13e-22 | 99.0 |
| Msa1353500 | AT2G33100.1 | 22.519 | 262 | 158 | 8 | 197 | 415 | 740 | 999 | 2.31e-11 | 66.2 |
Find 82 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATATTGTTTGCTTCTT+TGG | 0.079838 | tig0013542:-24251 | Msa1353500:CDS |
| TTTGCTTCTTTGGTGGTTTA+TGG | 0.157159 | tig0013542:-24241 | Msa1353500:CDS |
| TGATTACAGCTTAGGGTATC+AGG | 0.238209 | tig0013542:-26344 | Msa1353500:intron |
| GTCACCATACAAAGATTCTT+TGG | 0.260388 | tig0013542:+28221 | Msa1353500:intergenic |
| TTGGGTTGCTTCCGAAGTTT+TGG | 0.268644 | tig0013542:+28240 | Msa1353500:intergenic |
| AAATATAGTCCATTCACTTA+TGG | 0.291383 | tig0013542:-24833 | Msa1353500:CDS |
| CAACCAGTGGCATTTCCTTT+TGG | 0.305968 | tig0013542:+26544 | Msa1353500:intergenic |
| AGTAGAAGTGCATTACTCTT+TGG | 0.327163 | tig0013542:-25961 | Msa1353500:CDS |
| GAGCCATTACATAACTAATA+AGG | 0.332006 | tig0013542:+24171 | Msa1353500:intergenic |
| TGTGAAACATTTGTGGGAAT+TGG | 0.356347 | tig0013542:+26195 | Msa1353500:intergenic |
| ACAACCTGATCATCCCAAAA+AGG | 0.366065 | tig0013542:+28389 | Msa1353500:intergenic |
| TTGTATCTATGAGGAACATT+TGG | 0.386047 | tig0013542:+26498 | Msa1353500:intergenic |
| AAGGTTAAACAATGAACAAT+AGG | 0.386453 | tig0013542:+24797 | Msa1353500:intergenic |
| AATATTGTTTGCTTCTTTGG+TGG | 0.391566 | tig0013542:-24248 | Msa1353500:CDS |
| ATTCCTTCTTTCACGTTAGT+TGG | 0.391890 | tig0013542:+24905 | Msa1353500:intergenic |
| AAACTTGAGAGTACCATTAC+TGG | 0.413359 | tig0013542:-25001 | Msa1353500:intron |
| TCACCATACAAAGATTCTTT+GGG | 0.416966 | tig0013542:+28222 | Msa1353500:intergenic |
| AGTATGAGTAACACAATCAT+TGG | 0.420712 | tig0013542:+24272 | Msa1353500:intergenic |
| CTTGATGCTCAAAACAACTT+TGG | 0.422960 | tig0013542:-25371 | Msa1353500:CDS |
| TTTCCTTATTAGTTATGTAA+TGG | 0.435667 | tig0013542:-24174 | Msa1353500:CDS |
| TTTATCGAGGTAATTACAAC+TGG | 0.437734 | tig0013542:-24503 | Msa1353500:CDS |
| AATGCGATTGTAACATCAAT+CGG | 0.451594 | tig0013542:-24446 | Msa1353500:CDS |
| CAATCTACGATAAGAACATA+AGG | 0.458599 | tig0013542:+26305 | Msa1353500:intergenic |
| GTTATAATCCCCTCTAGAAT+AGG | 0.460351 | tig0013542:+24140 | Msa1353500:intergenic |
| ATCTCCTTCATTGTAGAGGT+TGG | 0.465697 | tig0013542:-24976 | Msa1353500:CDS |
| GCAAGATCTTGAGAGATTTG+AGG | 0.467361 | tig0013542:+26224 | Msa1353500:intergenic |
| GAAGATCATTAACGACCAAA+AGG | 0.469344 | tig0013542:-26559 | Msa1353500:intron |
| GGTGTATGGAATAACATATA+GGG | 0.472437 | tig0013542:+24754 | Msa1353500:intergenic |
| CAACCCAAAGAATCTTTGTA+TGG | 0.479542 | tig0013542:-28225 | Msa1353500:CDS |
| CGATGGTGCAGCGTTGCTCA+TGG | 0.481187 | tig0013542:-24297 | Msa1353500:CDS |
| GGCTATCTCCTTCATTGTAG+AGG | 0.483566 | tig0013542:-24980 | Msa1353500:CDS |
| CTTGAAAGTCCATAAGTGAA+TGG | 0.490494 | tig0013542:+24824 | Msa1353500:intergenic |
| TACGCAAAAGAAATATGAGC+AGG | 0.495327 | tig0013542:-24333 | Msa1353500:CDS |
| GAATGAGTCAGTTGATAAAG+TGG | 0.496228 | tig0013542:-24886 | Msa1353500:CDS |
| CAGGGTAGGTTTAATTTCGA+TGG | 0.500941 | tig0013542:-24314 | Msa1353500:CDS |
| CTAATGTTGTGAAACATTTG+TGG | 0.509676 | tig0013542:+26188 | Msa1353500:intergenic |
| ATGGATGGGTTAAGAGGTCC+AGG | 0.516315 | tig0013542:-26009 | Msa1353500:CDS |
| TTAAGAGGTCCAGGTCTCAC+TGG | 0.518397 | tig0013542:-26000 | Msa1353500:CDS |
| ATCTCCAACCTCTACAATGA+AGG | 0.521816 | tig0013542:+24972 | Msa1353500:intergenic |
| ACAATGTGGAAAGGAATGGA+TGG | 0.521925 | tig0013542:-26024 | Msa1353500:CDS |
| TAATGTTGTGAAACATTTGT+GGG | 0.524590 | tig0013542:+26189 | Msa1353500:intergenic |
| GGTCCAGGTCTCACTGGCAG+TGG | 0.527591 | tig0013542:-25994 | Msa1353500:CDS |
| TCTAAGCTATCCTATTCTAG+AGG | 0.529147 | tig0013542:-24150 | Msa1353500:CDS |
| ATCGAGGTAATTACAACTGG+TGG | 0.531798 | tig0013542:-24500 | Msa1353500:CDS |
| ATTATAACTATGAAAACAAA+GGG | 0.535272 | tig0013542:-24125 | Msa1353500:CDS |
| GCTCCTCCTTTGTATCTATG+AGG | 0.536638 | tig0013542:+26489 | Msa1353500:intergenic |
| TTAGACAATGTGGAAAGGAA+TGG | 0.546732 | tig0013542:-26028 | Msa1353500:intron |
| TAAGCTTGACAAGTGACAAA+AGG | 0.547809 | tig0013542:+24778 | Msa1353500:intergenic |
| TGGTGACTGATAGACATTCT+CGG | 0.549468 | tig0013542:-28205 | Msa1353500:CDS |
| CTAAGCTATCCTATTCTAGA+GGG | 0.554636 | tig0013542:-24149 | Msa1353500:CDS |
| TTCTATTAGACAATGTGGAA+AGG | 0.555279 | tig0013542:-26033 | Msa1353500:intron |
| AATCTACGATAAGAACATAA+GGG | 0.556072 | tig0013542:+26306 | Msa1353500:intergenic |
| TGATAGACATTCTCGGATTG+AGG | 0.558381 | tig0013542:-28198 | Msa1353500:intron |
| TTTCCACTGCCAGTGAGACC+TGG | 0.561449 | tig0013542:+25991 | Msa1353500:intergenic |
| AAAATGGTTTGGGTTGAACA+AGG | 0.566860 | tig0013542:-24393 | Msa1353500:CDS |
| GTGGCTCATCGACACATTGG+TGG | 0.569532 | tig0013542:-24481 | Msa1353500:CDS |
| ATGCGATTGTAACATCAATC+GGG | 0.573290 | tig0013542:-24445 | Msa1353500:CDS |
| AATGAGTCAGTTGATAAAGT+GGG | 0.576301 | tig0013542:-24885 | Msa1353500:CDS |
| GCTCCAACTAACGTGAAAGA+AGG | 0.576975 | tig0013542:-24908 | Msa1353500:CDS |
| AAAAGAAATATGAGCAGGGT+AGG | 0.580819 | tig0013542:-24328 | Msa1353500:CDS |
| TAACTATGAAAACAAAGGGT+GGG | 0.580904 | tig0013542:-24121 | Msa1353500:CDS |
| CAATGTGGAAAGGAATGGAT+GGG | 0.583820 | tig0013542:-26023 | Msa1353500:CDS |
| ATGGAGACTACTCAATGTGA+GGG | 0.586276 | tig0013542:-24222 | Msa1353500:CDS |
| AATGTTCCTCATAGATACAA+AGG | 0.598503 | tig0013542:-26495 | Msa1353500:CDS |
| CGACCAAAAGGAAATGCCAC+TGG | 0.605093 | tig0013542:-26547 | Msa1353500:CDS |
| GATTACAGCTTAGGGTATCA+GGG | 0.607803 | tig0013542:-26343 | Msa1353500:intron |
| GATTATAACTATGAAAACAA+AGG | 0.608756 | tig0013542:-24126 | Msa1353500:CDS |
| AAAGGAATGGATGGGTTAAG+AGG | 0.611560 | tig0013542:-26015 | Msa1353500:CDS |
| ACATATATAATAGTGAGGCT+AGG | 0.613526 | tig0013542:-26157 | Msa1353500:CDS |
| ATAACTATGAAAACAAAGGG+TGG | 0.613730 | tig0013542:-24122 | Msa1353500:CDS |
| TATGGAGACTACTCAATGTG+AGG | 0.626897 | tig0013542:-24223 | Msa1353500:CDS |
| CTGGTGGCTCATCGACACAT+TGG | 0.629377 | tig0013542:-24484 | Msa1353500:CDS |
| ATGAAGGAGATAGCCAGTAA+TGG | 0.638543 | tig0013542:+24988 | Msa1353500:intergenic |
| ACGCAAAAGAAATATGAGCA+GGG | 0.640748 | tig0013542:-24332 | Msa1353500:CDS |
| GAAAGACATATATAATAGTG+AGG | 0.642838 | tig0013542:-26162 | Msa1353500:CDS |
| GTATCAGGGCTAATCAGCAA+TGG | 0.646196 | tig0013542:-26329 | Msa1353500:CDS |
| GGAGCACATCCCAAGAAACA+TGG | 0.648652 | tig0013542:+24926 | Msa1353500:intergenic |
| AGGAGGAGCTCTCAATACAC+TGG | 0.655097 | tig0013542:-26475 | Msa1353500:intron |
| CGAGAAACATAAACAACCAG+TGG | 0.661347 | tig0013542:+26531 | Msa1353500:intergenic |
| TAAGCTATCCTATTCTAGAG+GGG | 0.672123 | tig0013542:-24148 | Msa1353500:CDS |
| GTTCCTCATAGATACAAAGG+AGG | 0.693020 | tig0013542:-26492 | Msa1353500:CDS |
| GAATCACTGAAAGCAATACG+TGG | 0.728981 | tig0013542:-25329 | Msa1353500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTAAACAAATAAAAA+TGG | - | tig0013542:24623-24642 | Msa1353500:intron | 10.0% |
| !!! | ATTTGTATTTTAATATTTAG+AGG | - | tig0013542:25298-25317 | Msa1353500:CDS | 10.0% |
| !!! | GAAAAATGAATAATTTTAAA+AGG | + | tig0013542:25849-25868 | Msa1353500:intergenic | 10.0% |
| !! | TTAATTTAAAGAAATTTAAG+AGG | + | tig0013542:26099-26118 | Msa1353500:intergenic | 10.0% |
| !! | AATGTTATATTTATTCATAT+TGG | - | tig0013542:27073-27092 | Msa1353500:intron | 10.0% |
| !! | TATATATATGGAATTTATAA+TGG | - | tig0013542:27109-27128 | Msa1353500:intron | 10.0% |
| !!! | TTGATTTTTTAGAAATGTTA+TGG | - | tig0013542:24594-24613 | Msa1353500:intron | 15.0% |
| !! | ATTATTTCCATATTTAAAAG+AGG | + | tig0013542:24719-24738 | Msa1353500:intergenic | 15.0% |
| !!! | TAACTTCTTGTTATTAAAAA+TGG | - | tig0013542:25452-25471 | Msa1353500:intron | 15.0% |
| !!! | TGAATAATTTTAAAAGGAAA+TGG | + | tig0013542:25843-25862 | Msa1353500:intergenic | 15.0% |
| !! | ATCTTCAAAAAAAGATAATA+AGG | + | tig0013542:25944-25963 | Msa1353500:intergenic | 15.0% |
| !!! | AAAATTGTCATTTTCTAAAT+AGG | - | tig0013542:26883-26902 | Msa1353500:intron | 15.0% |
| !!! | AAATTGTCATTTTCTAAATA+GGG | - | tig0013542:26884-26903 | Msa1353500:intron | 15.0% |
| !! | AACATAAAATACACAAATTA+GGG | - | tig0013542:27319-27338 | Msa1353500:intron | 15.0% |
| !!! | ATCATTTTATTTTATGTTAC+AGG | - | tig0013542:27932-27951 | Msa1353500:intron | 15.0% |
| !! | ATTATAACTATGAAAACAAA+GGG | - | tig0013542:28392-28411 | Msa1353500:five_prime_UTR | 15.0% |
| !! | CAAAAAAATATCCAAAACTT+CGG | - | tig0013542:24266-24285 | Msa1353500:CDS | 20.0% |
| !!! | ATTTTTTGGATTGTTATTCT+CGG | - | tig0013542:24524-24543 | Msa1353500:intron | 20.0% |
| !!! | TTCAATTTCTCCATTTTTAA+GGG | + | tig0013542:24882-24901 | Msa1353500:intergenic | 20.0% |
| !!! | TTTCAATTTCTCCATTTTTA+AGG | + | tig0013542:24883-24902 | Msa1353500:intergenic | 20.0% |
| !!! | ACCAATTTTTTGTTTTTGAA+TGG | + | tig0013542:25055-25074 | Msa1353500:intergenic | 20.0% |
| !!! | AACAAAAAATTGGTTTAGAT+AGG | - | tig0013542:25061-25080 | Msa1353500:intron | 20.0% |
| !! | TTAATAATATGGCAACAATT+GGG | + | tig0013542:25134-25153 | Msa1353500:intergenic | 20.0% |
| !!! | CATTTTCTGAGTTAATAATA+TGG | + | tig0013542:25145-25164 | Msa1353500:intergenic | 20.0% |
| !!! | ACAAATACCATAATCTTTTA+GGG | + | tig0013542:25284-25303 | Msa1353500:intergenic | 20.0% |
| !!! | TACAAATACCATAATCTTTT+AGG | + | tig0013542:25285-25304 | Msa1353500:intergenic | 20.0% |
| !!! | CTTGTTATTAAAAATGGTAA+AGG | - | tig0013542:25458-25477 | Msa1353500:intron | 20.0% |
| !!! | TAATATAGACCTCTAAAAAA+TGG | + | tig0013542:25495-25514 | Msa1353500:intergenic | 20.0% |
| !! | GATTGAACTTAATATTTACA+TGG | - | tig0013542:25515-25534 | Msa1353500:intron | 20.0% |
| !!! | AAGACAAACTTAATTCTTTT+GGG | + | tig0013542:25580-25599 | Msa1353500:intergenic | 20.0% |
| !!! | AATGTTAATAAGTGTCATTA+GGG | + | tig0013542:25687-25706 | Msa1353500:intergenic | 20.0% |
| !!! | AAATGTTAATAAGTGTCATT+AGG | + | tig0013542:25688-25707 | Msa1353500:intergenic | 20.0% |
| !!! | ATAAGGAATATTTTGTTTGT+AGG | + | tig0013542:25880-25899 | Msa1353500:intergenic | 20.0% |
| !!! | TGGTCATTATTTTGATAATA+AGG | + | tig0013542:25897-25916 | Msa1353500:intergenic | 20.0% |
| !!! | TCATCAATATATGTGTATTT+TGG | + | tig0013542:25917-25936 | Msa1353500:intergenic | 20.0% |
| !!! | TTTTGCCATTTCTTTTAATA+GGG | + | tig0013542:26710-26729 | Msa1353500:intergenic | 20.0% |
| !!! | AATTGTCATTTTCTAAATAG+GGG | - | tig0013542:26885-26904 | Msa1353500:intron | 20.0% |
| !!! | AAGCTTTATCTTTAAAATAC+AGG | + | tig0013542:26960-26979 | Msa1353500:intergenic | 20.0% |
| !! | GAACATAAAATACACAAATT+AGG | - | tig0013542:27318-27337 | Msa1353500:intron | 20.0% |
| !!! | TTATTTTATGTTACAGGTTA+CGG | - | tig0013542:27938-27957 | Msa1353500:intron | 20.0% |
| !! | TTATAGAAGCAACAAAAAAA+TGG | - | tig0013542:28108-28127 | Msa1353500:intron | 20.0% |
| !! | TTTCCTTATTAGTTATGTAA+TGG | - | tig0013542:28343-28362 | Msa1353500:five_prime_UTR | 20.0% |
| !! | GATTATAACTATGAAAACAA+AGG | - | tig0013542:28391-28410 | Msa1353500:five_prime_UTR | 20.0% |
| !! | TGATGATTTTACAATTTGAC+AGG | - | tig0013542:24226-24245 | Msa1353500:CDS | 25.0% |
| !! | TTTTTGCATTTTCTCGTATT+TGG | + | tig0013542:24252-24271 | Msa1353500:intergenic | 25.0% |
| ! | ATAAAGTCACCAATAAATTG+AGG | - | tig0013542:24466-24485 | Msa1353500:CDS | 25.0% |
| ! | ATAGGATAACCTCAATTTAT+TGG | + | tig0013542:24478-24497 | Msa1353500:intergenic | 25.0% |
| !!! | TATCCTATGTGTTTGTTTTA+AGG | - | tig0013542:24490-24509 | Msa1353500:CDS | 25.0% |
| ! | TTACCTTAAAACAAACACAT+AGG | + | tig0013542:24496-24515 | Msa1353500:intergenic | 25.0% |
| !!! | AGGTAAGAACTTACATTTTT+TGG | - | tig0013542:24510-24529 | Msa1353500:CDS | 25.0% |
| ! | ATTCTCGGAATAATATTTCT+AGG | - | tig0013542:24539-24558 | Msa1353500:intron | 25.0% |
| !! | GATTCATCCTCTTTTAAATA+TGG | - | tig0013542:24709-24728 | Msa1353500:intron | 25.0% |
| ! | TCATGTGTAAATAACATTTC+TGG | - | tig0013542:24750-24769 | Msa1353500:intron | 25.0% |
| !! | AAGTCATTATTTCTTTGTTG+AGG | + | tig0013542:25026-25045 | Msa1353500:intergenic | 25.0% |
| ! | GCCATTCAAAAACAAAAAAT+TGG | - | tig0013542:25051-25070 | Msa1353500:intron | 25.0% |
| ! | GTTAATAATATGGCAACAAT+TGG | + | tig0013542:25135-25154 | Msa1353500:intergenic | 25.0% |
| ! | AAGAAAGTAATGCAAATTCA+TGG | + | tig0013542:25242-25261 | Msa1353500:intergenic | 25.0% |
| ! | TATTTAGAGGTCATCTAATA+TGG | - | tig0013542:25311-25330 | Msa1353500:CDS | 25.0% |
| !!! | TATCTTAGACCATTTTTTAG+AGG | - | tig0013542:25483-25502 | Msa1353500:intron | 25.0% |
| !! | TCCTTAAACAATGTCTTTTA+GGG | + | tig0013542:25556-25575 | Msa1353500:intergenic | 25.0% |
| !! | TTCCTTAAACAATGTCTTTT+AGG | + | tig0013542:25557-25576 | Msa1353500:intergenic | 25.0% |
| !! | CAAGACAAACTTAATTCTTT+TGG | + | tig0013542:25581-25600 | Msa1353500:intergenic | 25.0% |
| !!! | CACTTATTAACATTTTGATG+AGG | - | tig0013542:25693-25712 | Msa1353500:intron | 25.0% |
| !! | ATGTTTCAACTTGTTCATTA+GGG | - | tig0013542:25778-25797 | Msa1353500:intron | 25.0% |
| ! | TGTCTTAATGACATTGTTTA+AGG | - | tig0013542:25814-25833 | Msa1353500:intron | 25.0% |
| ! | AATCTACGATAAGAACATAA+GGG | + | tig0013542:26214-26233 | Msa1353500:intergenic | 25.0% |
| ! | TAATGTTGTGAAACATTTGT+GGG | + | tig0013542:26331-26350 | Msa1353500:intergenic | 25.0% |
| ! | GAAAGACATATATAATAGTG+AGG | - | tig0013542:26355-26374 | Msa1353500:intron | 25.0% |
| !! | ATCTAAAGAGCTTGAAATTT+TGG | + | tig0013542:26406-26425 | Msa1353500:intergenic | 25.0% |
| !! | GAATTTTCTATTAGACAATG+TGG | - | tig0013542:26479-26498 | Msa1353500:CDS | 25.0% |
| ! | TTAGAATTAATAATGTCCTC+AGG | + | tig0013542:26642-26661 | Msa1353500:intergenic | 25.0% |
| !!! | TCGCAACATTTTAAAACATA+GGG | + | tig0013542:26679-26698 | Msa1353500:intergenic | 25.0% |
| !!! | ATCGCAACATTTTAAAACAT+AGG | + | tig0013542:26680-26699 | Msa1353500:intergenic | 25.0% |
| !!! | GTTTTAAAATGTTGCGATTT+TGG | - | tig0013542:26682-26701 | Msa1353500:intron | 25.0% |
| !!! | TTTGCCATTTCTTTTAATAG+GGG | + | tig0013542:26709-26728 | Msa1353500:intergenic | 25.0% |
| !!! | CTTTTGCCATTTCTTTTAAT+AGG | + | tig0013542:26711-26730 | Msa1353500:intergenic | 25.0% |
| ! | ATCATATTTCCCTTATGTTA+GGG | + | tig0013542:26770-26789 | Msa1353500:intergenic | 25.0% |
| !!! | ATTGTCATTTTCTAAATAGG+GGG | - | tig0013542:26886-26905 | Msa1353500:intron | 25.0% |
| ! | CATTCTTAACCAATAATCTT+AGG | - | tig0013542:26990-27009 | Msa1353500:intron | 25.0% |
| !! | TATTTATTCATATTGGCTGA+CGG | - | tig0013542:27080-27099 | Msa1353500:intron | 25.0% |
| ! | TATATGGAATTTATAATGGC+AGG | - | tig0013542:27113-27132 | Msa1353500:intron | 25.0% |
| ! | ATATGGAATTTATAATGGCA+GGG | - | tig0013542:27114-27133 | Msa1353500:intron | 25.0% |
| ! | GCAAAAATATCGAAATTGTT+AGG | + | tig0013542:27387-27406 | Msa1353500:intergenic | 25.0% |
| ! | GATATCAATCAAGTTAATGA+TGG | + | tig0013542:27470-27489 | Msa1353500:intergenic | 25.0% |
| ! | AAATATAGTCCATTCACTTA+TGG | - | tig0013542:27684-27703 | Msa1353500:intron | 25.0% |
| ! | AAGGTTAAACAATGAACAAT+AGG | + | tig0013542:27723-27742 | Msa1353500:intergenic | 25.0% |
| ! | ATTTATCCATTTCTTACCTT+TGG | + | tig0013542:27840-27859 | Msa1353500:intergenic | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | - | tig0013542:27892-27911 | Msa1353500:intron | 25.0% |
| ! | ATTGTAAACACTATAAACCA+AGG | + | tig0013542:27966-27985 | Msa1353500:intergenic | 25.0% |
| ! | AAGCAACAAAAAAATGGTTT+GGG | - | tig0013542:28114-28133 | Msa1353500:intron | 25.0% |
| ! | CTAAATATTGTTTGCTTCTT+TGG | - | tig0013542:28266-28285 | Msa1353500:exon | 25.0% |
| ! | TTTCTGTGTTGTGTTTTCAT+TGG | - | tig0013542:24159-24178 | Msa1353500:CDS | 30.0% |
| ! | TTCTGTGTTGTGTTTTCATT+GGG | - | tig0013542:24160-24179 | Msa1353500:CDS | 30.0% |
| TCACCATACAAAGATTCTTT+GGG | + | tig0013542:24298-24317 | Msa1353500:intergenic | 30.0% | |
| ! | TCAATTTTTACCAAACACGT+GGG | + | tig0013542:24578-24597 | Msa1353500:intergenic | 30.0% |
| ! | ATCAATTTTTACCAAACACG+TGG | + | tig0013542:24579-24598 | Msa1353500:intergenic | 30.0% |
| GATGAATCTAACATTCTCAT+GGG | + | tig0013542:24697-24716 | Msa1353500:intergenic | 30.0% | |
| AACAAACACACCCTTAAAAA+TGG | - | tig0013542:24869-24888 | Msa1353500:CDS | 30.0% | |
| !!! | TTTTTTTTCCATGCTTGTTG+TGG | + | tig0013542:25219-25238 | Msa1353500:intergenic | 30.0% |
| ! | TTTTTGCTGCAAGTTAGAAA+TGG | + | tig0013542:25731-25750 | Msa1353500:intergenic | 30.0% |
| ! | CTAATGAACAAGTTGAAACA+TGG | + | tig0013542:25779-25798 | Msa1353500:intergenic | 30.0% |
| ! | CATGTTTCAACTTGTTCATT+AGG | - | tig0013542:25777-25796 | Msa1353500:intron | 30.0% |
| TTGTATCTATGAGGAACATT+TGG | + | tig0013542:26022-26041 | Msa1353500:intergenic | 30.0% | |
| AATGTTCCTCATAGATACAA+AGG | - | tig0013542:26022-26041 | Msa1353500:CDS | 30.0% | |
| ATCAAATGTGATTACAGCTT+AGG | - | tig0013542:26165-26184 | Msa1353500:CDS | 30.0% | |
| TCAAATGTGATTACAGCTTA+GGG | - | tig0013542:26166-26185 | Msa1353500:CDS | 30.0% | |
| CAATCTACGATAAGAACATA+AGG | + | tig0013542:26215-26234 | Msa1353500:intergenic | 30.0% | |
| ! | AAAAAAGCACATGGATTGTT+TGG | + | tig0013542:26267-26286 | Msa1353500:intergenic | 30.0% |
| CTAATGTTGTGAAACATTTG+TGG | + | tig0013542:26332-26351 | Msa1353500:intergenic | 30.0% | |
| ACATATATAATAGTGAGGCT+AGG | - | tig0013542:26360-26379 | Msa1353500:intron | 30.0% | |
| GACAAAGACACAAAAATGAA+TGG | + | tig0013542:26434-26453 | Msa1353500:intergenic | 30.0% | |
| TTCTATTAGACAATGTGGAA+AGG | - | tig0013542:26484-26503 | Msa1353500:CDS | 30.0% | |
| !!! | CTATTTGTACCTTTTTGGTT+TGG | + | tig0013542:26586-26605 | Msa1353500:intergenic | 30.0% |
| !! | TGATGCTATTTGTACCTTTT+TGG | + | tig0013542:26591-26610 | Msa1353500:intergenic | 30.0% |
| !!! | GCAACATTTTAAAACATAGG+GGG | + | tig0013542:26677-26696 | Msa1353500:intergenic | 30.0% |
| !!! | CGCAACATTTTAAAACATAG+GGG | + | tig0013542:26678-26697 | Msa1353500:intergenic | 30.0% |
| !! | TTGCCATTTCTTTTAATAGG+GGG | + | tig0013542:26708-26727 | Msa1353500:intergenic | 30.0% |
| TCATATTTCCCTTATGTTAG+GGG | + | tig0013542:26769-26788 | Msa1353500:intergenic | 30.0% | |
| GATCATATTTCCCTTATGTT+AGG | + | tig0013542:26771-26790 | Msa1353500:intergenic | 30.0% | |
| !! | AACTTTTTGAGAAGATAAGG+GGG | + | tig0013542:26799-26818 | Msa1353500:intergenic | 30.0% |
| !! | CAACTTTTTGAGAAGATAAG+GGG | + | tig0013542:26800-26819 | Msa1353500:intergenic | 30.0% |
| !! | GCAACTTTTTGAGAAGATAA+GGG | + | tig0013542:26801-26820 | Msa1353500:intergenic | 30.0% |
| TTCTCAAAAAGTTGCGATTA+TGG | - | tig0013542:26806-26825 | Msa1353500:intron | 30.0% | |
| AATGAGTGTCCTAAGATTAT+TGG | + | tig0013542:27002-27021 | Msa1353500:intergenic | 30.0% | |
| TGACGGAGACAATATATATA+TGG | - | tig0013542:27097-27116 | Msa1353500:intron | 30.0% | |
| TATGGAATTTATAATGGCAG+GGG | - | tig0013542:27115-27134 | Msa1353500:intron | 30.0% | |
| CTATGAGAGAAACACAAATT+GGG | - | tig0013542:27283-27302 | Msa1353500:intron | 30.0% | |
| TATGAGAGAAACACAAATTG+GGG | - | tig0013542:27284-27303 | Msa1353500:intron | 30.0% | |
| AAATATCGAAATTGTTAGGC+CGG | + | tig0013542:27383-27402 | Msa1353500:intergenic | 30.0% | |
| ! | TTAACTTGATTGATATCCAC+AGG | - | tig0013542:27473-27492 | Msa1353500:intron | 30.0% |
| !!! | TGGTATTTTTGGGTAAAGAT+AGG | + | tig0013542:27574-27593 | Msa1353500:intergenic | 30.0% |
| ! | CCAAGAAACATGGTATTTTT+GGG | + | tig0013542:27584-27603 | Msa1353500:intergenic | 30.0% |
| CCAAAAATACCATGTTTCTT+GGG | - | tig0013542:27582-27601 | Msa1353500:intron | 30.0% | |
| !! | AATGAGTCAGTTGATAAAGT+GGG | - | tig0013542:27632-27651 | Msa1353500:intron | 30.0% |
| GGTGTATGGAATAACATATA+GGG | + | tig0013542:27766-27785 | Msa1353500:intergenic | 30.0% | |
| ! | TTTCTTACCTTTGGAAATAC+AGG | + | tig0013542:27831-27850 | Msa1353500:intergenic | 30.0% |
| GTATTTCCAAAGGTAAGAAA+TGG | - | tig0013542:27831-27850 | Msa1353500:intron | 30.0% | |
| ATAAGTCAATTCAAACAGGA+CGG | - | tig0013542:27896-27915 | Msa1353500:intron | 30.0% | |
| TTTATCGAGGTAATTACAAC+TGG | - | tig0013542:28014-28033 | Msa1353500:intron | 30.0% | |
| AATGCGATTGTAACATCAAT+CGG | - | tig0013542:28071-28090 | Msa1353500:intron | 30.0% | |
| GAAGCAACAAAAAAATGGTT+TGG | - | tig0013542:28113-28132 | Msa1353500:intron | 30.0% | |
| AGTATGAGTAACACAATCAT+TGG | + | tig0013542:28248-28267 | Msa1353500:intergenic | 30.0% | |
| AATATTGTTTGCTTCTTTGG+TGG | - | tig0013542:28269-28288 | Msa1353500:exon | 30.0% | |
| !! | AGGGATTTTGATGAAATGTT+TGG | - | tig0013542:28314-28333 | Msa1353500:five_prime_UTR | 30.0% |
| GAGCCATTACATAACTAATA+AGG | + | tig0013542:28349-28368 | Msa1353500:intergenic | 30.0% | |
| ATAACTATGAAAACAAAGGG+TGG | - | tig0013542:28395-28414 | Msa1353500:five_prime_UTR | 30.0% | |
| TAACTATGAAAACAAAGGGT+GGG | - | tig0013542:28396-28415 | Msa1353500:five_prime_UTR | 30.0% | |
| CAACCCAAAGAATCTTTGTA+TGG | - | tig0013542:24292-24311 | Msa1353500:CDS | 35.0% | |
| GTCACCATACAAAGATTCTT+TGG | + | tig0013542:24299-24318 | Msa1353500:intergenic | 35.0% | |
| ! | GAAATAAATGTGACTTGTCG+TGG | - | tig0013542:24645-24664 | Msa1353500:intron | 35.0% |
| GGATGAATCTAACATTCTCA+TGG | + | tig0013542:24698-24717 | Msa1353500:intergenic | 35.0% | |
| ! | GCTTTGCAATCTCACATTTT+CGG | - | tig0013542:24825-24844 | Msa1353500:CDS | 35.0% |
| TAGATCCCTATCAATAGCTT+GGG | - | tig0013542:24984-25003 | Msa1353500:CDS | 35.0% | |
| TGTTACCCAAGCTATTGATA+GGG | + | tig0013542:24992-25011 | Msa1353500:intergenic | 35.0% | |
| GATGAAGGAGGAAAAAAAGA+AGG | + | tig0013542:25168-25187 | Msa1353500:intergenic | 35.0% | |
| GCCCTAAAAGACATTGTTTA+AGG | - | tig0013542:25552-25571 | Msa1353500:intron | 35.0% | |
| !! | ATTTTGATGAGGTCCATCTT+TGG | - | tig0013542:25704-25723 | Msa1353500:intron | 35.0% |
| AGTTAGAAATGGTCCAAAGA+TGG | + | tig0013542:25720-25739 | Msa1353500:intergenic | 35.0% | |
| ATCAAACTTCATCTTTGGTG+AGG | + | tig0013542:25754-25773 | Msa1353500:intergenic | 35.0% | |
| TGGTCATCAAACTTCATCTT+TGG | + | tig0013542:25759-25778 | Msa1353500:intergenic | 35.0% | |
| GAAGATCATTAACGACCAAA+AGG | - | tig0013542:25958-25977 | Msa1353500:intron | 35.0% | |
| ! | AGGATCAAGAAAAAAGCACA+TGG | + | tig0013542:26276-26295 | Msa1353500:intergenic | 35.0% |
| TGTGAAACATTTGTGGGAAT+TGG | + | tig0013542:26325-26344 | Msa1353500:intergenic | 35.0% | |
| TTAGACAATGTGGAAAGGAA+TGG | - | tig0013542:26489-26508 | Msa1353500:CDS | 35.0% | |
| ! | AGTAGAAGTGCATTACTCTT+TGG | - | tig0013542:26556-26575 | Msa1353500:CDS | 35.0% |
| TTTGGAAGTCCAAACCAAAA+AGG | - | tig0013542:26574-26593 | Msa1353500:intron | 35.0% | |
| GAATTCTAACAAATGACCTG+AGG | - | tig0013542:26623-26642 | Msa1353500:intron | 35.0% | |
| AGCATATTTCCCTAAACATG+GGG | + | tig0013542:26737-26756 | Msa1353500:intergenic | 35.0% | |
| GAGCATATTTCCCTAAACAT+GGG | + | tig0013542:26738-26757 | Msa1353500:intergenic | 35.0% | |
| AGAGCATATTTCCCTAAACA+TGG | + | tig0013542:26739-26758 | Msa1353500:intergenic | 35.0% | |
| ATATTTCCCTTATGTTAGGG+GGG | + | tig0013542:26767-26786 | Msa1353500:intergenic | 35.0% | |
| CATATTTCCCTTATGTTAGG+GGG | + | tig0013542:26768-26787 | Msa1353500:intergenic | 35.0% | |
| !! | CGCAACTTTTTGAGAAGATA+AGG | + | tig0013542:26802-26821 | Msa1353500:intergenic | 35.0% |
| !!! | ATCGCAACATTTTGAAACTG+AGG | - | tig0013542:26914-26933 | Msa1353500:intron | 35.0% |
| !!! | TCGCAACATTTTGAAACTGA+GGG | - | tig0013542:26915-26934 | Msa1353500:intron | 35.0% |
| CTTGATGCTCAAAACAACTT+TGG | - | tig0013542:27146-27165 | Msa1353500:intron | 35.0% | |
| ! | TTTACAAGAAGCATGTGAAG+TGG | - | tig0013542:27250-27269 | Msa1353500:intron | 35.0% |
| CCAATTTGTGTTTCTCTCAT+AGG | + | tig0013542:27285-27304 | Msa1353500:intergenic | 35.0% | |
| CCTATGAGAGAAACACAAAT+TGG | - | tig0013542:27282-27301 | Msa1353500:intron | 35.0% | |
| AAACACAAATTGGGGTAATG+AGG | - | tig0013542:27292-27311 | Msa1353500:intron | 35.0% | |
| ATTAGGGTAATGAGTAACCT+AGG | - | tig0013542:27335-27354 | Msa1353500:intron | 35.0% | |
| TTAGGGTAATGAGTAACCTA+GGG | - | tig0013542:27336-27355 | Msa1353500:intron | 35.0% | |
| !! | ATATTTTTGCCAGTTGAGCT+AGG | - | tig0013542:27397-27416 | Msa1353500:intron | 35.0% |
| !! | AAACTTGAGAGTACCATTAC+TGG | - | tig0013542:27516-27535 | Msa1353500:intron | 35.0% |
| CCCAAAAATACCATGTTTCT+TGG | - | tig0013542:27581-27600 | Msa1353500:intron | 35.0% | |
| ! | CCCAAGAAACATGGTATTTT+TGG | + | tig0013542:27585-27604 | Msa1353500:intergenic | 35.0% |
| ATTCCTTCTTTCACGTTAGT+TGG | + | tig0013542:27615-27634 | Msa1353500:intergenic | 35.0% | |
| !! | GAATGAGTCAGTTGATAAAG+TGG | - | tig0013542:27631-27650 | Msa1353500:intron | 35.0% |
| CTTGAAAGTCCATAAGTGAA+TGG | + | tig0013542:27696-27715 | Msa1353500:intergenic | 35.0% | |
| TAAGCTTGACAAGTGACAAA+AGG | + | tig0013542:27742-27761 | Msa1353500:intergenic | 35.0% | |
| GGGTGTATGGAATAACATAT+AGG | + | tig0013542:27767-27786 | Msa1353500:intergenic | 35.0% | |
| GTTATTCCATACACCCTATA+TGG | - | tig0013542:27771-27790 | Msa1353500:intron | 35.0% | |
| ACAATTCCATATAGGGTGTA+TGG | + | tig0013542:27780-27799 | Msa1353500:intergenic | 35.0% | |
| CTGAGGAACAATTCCATATA+GGG | + | tig0013542:27787-27806 | Msa1353500:intergenic | 35.0% | |
| TCTGAGGAACAATTCCATAT+AGG | + | tig0013542:27788-27807 | Msa1353500:intergenic | 35.0% | |
| AGGAATACCTGTATTTCCAA+AGG | - | tig0013542:27821-27840 | Msa1353500:intron | 35.0% | |
| GATAAAATGCTGAATCTGAC+TGG | + | tig0013542:28000-28019 | Msa1353500:intergenic | 35.0% | |
| ! | TCAGATTCAGCATTTTATCG+AGG | - | tig0013542:28001-28020 | Msa1353500:intron | 35.0% |
| ATGCGATTGTAACATCAATC+GGG | - | tig0013542:28072-28091 | Msa1353500:intron | 35.0% | |
| !! | AAAATGGTTTGGGTTGAACA+AGG | - | tig0013542:28124-28143 | Msa1353500:intron | 35.0% |
| TACGCAAAAGAAATATGAGC+AGG | - | tig0013542:28184-28203 | Msa1353500:intron | 35.0% | |
| ACGCAAAAGAAATATGAGCA+GGG | - | tig0013542:28185-28204 | Msa1353500:intron | 35.0% | |
| AAAAGAAATATGAGCAGGGT+AGG | - | tig0013542:28189-28208 | Msa1353500:intron | 35.0% | |
| ! | TTTGCTTCTTTGGTGGTTTA+TGG | - | tig0013542:28276-28295 | Msa1353500:exon | 35.0% |
| TCTAAGCTATCCTATTCTAG+AGG | - | tig0013542:28367-28386 | Msa1353500:five_prime_UTR | 35.0% | |
| CTAAGCTATCCTATTCTAGA+GGG | - | tig0013542:28368-28387 | Msa1353500:five_prime_UTR | 35.0% | |
| ! | TAAGCTATCCTATTCTAGAG+GGG | - | tig0013542:28369-28388 | Msa1353500:five_prime_UTR | 35.0% |
| !! | GTTATAATCCCCTCTAGAAT+AGG | + | tig0013542:28380-28399 | Msa1353500:intergenic | 35.0% |
| !!! | TGTACCTTTTTGGGATGATC+AGG | - | tig0013542:24124-24143 | Msa1353500:CDS | 40.0% |
| ACAACCTGATCATCCCAAAA+AGG | + | tig0013542:24131-24150 | Msa1353500:intergenic | 40.0% | |
| ! | TGTTGTGTTTTCATTGGGTC+AGG | - | tig0013542:24165-24184 | Msa1353500:CDS | 40.0% |
| TGGTGACTGATAGACATTCT+CGG | - | tig0013542:24312-24331 | Msa1353500:CDS | 40.0% | |
| TGATAGACATTCTCGGATTG+AGG | - | tig0013542:24319-24338 | Msa1353500:CDS | 40.0% | |
| ATTAGTCAGTTAAGCCGTGT+GGG | + | tig0013542:24347-24366 | Msa1353500:intergenic | 40.0% | |
| ! | TTAAGGGTGTGTTTGTTTCG+AGG | + | tig0013542:24866-24885 | Msa1353500:intergenic | 40.0% |
| TCTATGTCAACAAGAGTCTC+TGG | + | tig0013542:24923-24942 | Msa1353500:intergenic | 40.0% | |
| CAAGCTATTGATAGGGATCT+AGG | + | tig0013542:24985-25004 | Msa1353500:intergenic | 40.0% | |
| CTAGATCCCTATCAATAGCT+TGG | - | tig0013542:24983-25002 | Msa1353500:CDS | 40.0% | |
| GTGTTACCCAAGCTATTGAT+AGG | + | tig0013542:24993-25012 | Msa1353500:intergenic | 40.0% | |
| TTGGATGTAAGAGATGAAGG+AGG | + | tig0013542:25180-25199 | Msa1353500:intergenic | 40.0% | |
| CCTTCATCTCTTACATCCAA+CGG | - | tig0013542:25180-25199 | Msa1353500:intron | 40.0% | |
| TTCTTTGAGCCATCTTGATC+AGG | - | tig0013542:25257-25276 | Msa1353500:intron | 40.0% | |
| TCTTTGAGCCATCTTGATCA+GGG | - | tig0013542:25258-25277 | Msa1353500:intron | 40.0% | |
| ATCAGGGCCCTAAAAGATTA+TGG | - | tig0013542:25274-25293 | Msa1353500:intron | 40.0% | |
| AGGTCATCTAATATGGACTC+TGG | - | tig0013542:25318-25337 | Msa1353500:CDS | 40.0% | |
| GGTCATCTAATATGGACTCT+GGG | - | tig0013542:25319-25338 | Msa1353500:CDS | 40.0% | |
| CGAGAAACATAAACAACCAG+TGG | + | tig0013542:25989-26008 | Msa1353500:intergenic | 40.0% | |
| GTTCCTCATAGATACAAAGG+AGG | - | tig0013542:26025-26044 | Msa1353500:CDS | 40.0% | |
| ! | TGATTACAGCTTAGGGTATC+AGG | - | tig0013542:26173-26192 | Msa1353500:CDS | 40.0% |
| ! | GATTACAGCTTAGGGTATCA+GGG | - | tig0013542:26174-26193 | Msa1353500:CDS | 40.0% |
| GCAAGATCTTGAGAGATTTG+AGG | + | tig0013542:26296-26315 | Msa1353500:intergenic | 40.0% | |
| ! | TGAGGCTAGGAATGCTTTTA+CGG | - | tig0013542:26373-26392 | Msa1353500:intron | 40.0% |
| ACAATGTGGAAAGGAATGGA+TGG | - | tig0013542:26493-26512 | Msa1353500:CDS | 40.0% | |
| CAATGTGGAAAGGAATGGAT+GGG | - | tig0013542:26494-26513 | Msa1353500:CDS | 40.0% | |
| !! | AAAGGAATGGATGGGTTAAG+AGG | - | tig0013542:26502-26521 | Msa1353500:CDS | 40.0% |
| TGGCCCCCTATTAAAAGAAA+TGG | - | tig0013542:26702-26721 | Msa1353500:intron | 40.0% | |
| CAAAAGTGACCCCATGTTTA+GGG | - | tig0013542:26725-26744 | Msa1353500:intron | 40.0% | |
| ! | TTTTGACCCCCCTAACATAA+GGG | - | tig0013542:26758-26777 | Msa1353500:intron | 40.0% |
| ! | TGGTGTCTTCTCAGCAATTT+TGG | - | tig0013542:26847-26866 | Msa1353500:intron | 40.0% |
| ! | GGTGTCTTCTCAGCAATTTT+GGG | - | tig0013542:26848-26867 | Msa1353500:intron | 40.0% |
| !!! | TCAGCAATTTTGGGACGAAA+GGG | - | tig0013542:26857-26876 | Msa1353500:intron | 40.0% |
| !!! | CGCAACATTTTGAAACTGAG+GGG | - | tig0013542:26916-26935 | Msa1353500:intron | 40.0% |
| GAATCACTGAAAGCAATACG+TGG | - | tig0013542:27188-27207 | Msa1353500:intron | 40.0% | |
| CTTGATTGATATCCACAGGT+AGG | - | tig0013542:27477-27496 | Msa1353500:intron | 40.0% | |
| ATGAAGGAGATAGCCAGTAA+TGG | + | tig0013542:27532-27551 | Msa1353500:intergenic | 40.0% | |
| ATCTCCTTCATTGTAGAGGT+TGG | - | tig0013542:27541-27560 | Msa1353500:intron | 40.0% | |
| ATCTCCAACCTCTACAATGA+AGG | + | tig0013542:27548-27567 | Msa1353500:intergenic | 40.0% | |
| CCTTTCAAGAAGCAAATCTG+AGG | + | tig0013542:27804-27823 | Msa1353500:intergenic | 40.0% | |
| ! | CCTCAGATTTGCTTCTTGAA+AGG | - | tig0013542:27801-27820 | Msa1353500:intron | 40.0% |
| ATCGAGGTAATTACAACTGG+TGG | - | tig0013542:28017-28036 | Msa1353500:intron | 40.0% | |
| ! | CAGGGTAGGTTTAATTTCGA+TGG | - | tig0013542:28203-28222 | Msa1353500:CDS | 40.0% |
| TATGGAGACTACTCAATGTG+AGG | - | tig0013542:28294-28313 | Msa1353500:five_prime_UTR | 40.0% | |
| ATGGAGACTACTCAATGTGA+GGG | - | tig0013542:28295-28314 | Msa1353500:five_prime_UTR | 40.0% | |
| !! | TTGGGTTGCTTCCGAAGTTT+TGG | + | tig0013542:24280-24299 | Msa1353500:intergenic | 45.0% |
| ! | GATTAGTCAGTTAAGCCGTG+TGG | + | tig0013542:24348-24367 | Msa1353500:intergenic | 45.0% |
| AACACTTCTACCCACGTGTT+TGG | - | tig0013542:24565-24584 | Msa1353500:intron | 45.0% | |
| ! | GACTTGCTCAAAGAAGAGGT+GGG | + | tig0013542:24963-24982 | Msa1353500:intergenic | 45.0% |
| ! | CTAGGACTTGCTCAAAGAAG+AGG | + | tig0013542:24967-24986 | Msa1353500:intergenic | 45.0% |
| CTTCCTCAACACCATTGTGT+CGG | - | tig0013542:25103-25122 | Msa1353500:intron | 45.0% | |
| CCGTTGGATGTAAGAGATGA+AGG | + | tig0013542:25183-25202 | Msa1353500:intergenic | 45.0% | |
| TGGTTGAGCATCAAAACCGT+TGG | + | tig0013542:25199-25218 | Msa1353500:intergenic | 45.0% | |
| ATGCTCAACCACAACAAGCA+TGG | - | tig0013542:25208-25227 | Msa1353500:intron | 45.0% | |
| !!! | TTTTAGGGCCCTGATCAAGA+TGG | + | tig0013542:25269-25288 | Msa1353500:intergenic | 45.0% |
| ! | CAACCAGTGGCATTTCCTTT+TGG | + | tig0013542:25976-25995 | Msa1353500:intergenic | 45.0% |
| GCTCCTCCTTTGTATCTATG+AGG | + | tig0013542:26031-26050 | Msa1353500:intergenic | 45.0% | |
| GTATCAGGGCTAATCAGCAA+TGG | - | tig0013542:26188-26207 | Msa1353500:CDS | 45.0% | |
| GCAAAAGTGACCCCATGTTT+AGG | - | tig0013542:26724-26743 | Msa1353500:intron | 45.0% | |
| ! | CTTTTGACCCCCCTAACATA+AGG | - | tig0013542:26757-26776 | Msa1353500:intron | 45.0% |
| !!! | CTCAGCAATTTTGGGACGAA+AGG | - | tig0013542:26856-26875 | Msa1353500:intron | 45.0% |
| !!! | CAGCAATTTTGGGACGAAAG+GGG | - | tig0013542:26858-26877 | Msa1353500:intron | 45.0% |
| CTCATAAGTCCTAGCTCAAC+TGG | + | tig0013542:27409-27428 | Msa1353500:intergenic | 45.0% | |
| GCATAAGAGAATCCTACCTG+TGG | + | tig0013542:27492-27511 | Msa1353500:intergenic | 45.0% | |
| GGCTATCTCCTTCATTGTAG+AGG | - | tig0013542:27537-27556 | Msa1353500:intron | 45.0% | |
| GCTCCAACTAACGTGAAAGA+AGG | - | tig0013542:27609-27628 | Msa1353500:intron | 45.0% | |
| ! | GGACTTGCTCAAAGAAGAGG+TGG | + | tig0013542:24964-24983 | Msa1353500:intergenic | 50.0% |
| ! | CATCCGACACAATGGTGTTG+AGG | + | tig0013542:25109-25128 | Msa1353500:intergenic | 50.0% |
| CTCAACACCATTGTGTCGGA+TGG | - | tig0013542:25107-25126 | Msa1353500:intron | 50.0% | |
| ATTGGGACCATCCGACACAA+TGG | + | tig0013542:25117-25136 | Msa1353500:intergenic | 50.0% | |
| CGACCAAAAGGAAATGCCAC+TGG | - | tig0013542:25970-25989 | Msa1353500:CDS | 50.0% | |
| AGGAGGAGCTCTCAATACAC+TGG | - | tig0013542:26042-26061 | Msa1353500:intron | 50.0% | |
| !! | ATGGATGGGTTAAGAGGTCC+AGG | - | tig0013542:26508-26527 | Msa1353500:CDS | 50.0% |
| TTAAGAGGTCCAGGTCTCAC+TGG | - | tig0013542:26517-26536 | Msa1353500:CDS | 50.0% | |
| ! | TGCGATTATGGCCCCTGTTT+TGG | - | tig0013542:26818-26837 | Msa1353500:intron | 50.0% |
| ! | GCGATTATGGCCCCTGTTTT+GGG | - | tig0013542:26819-26838 | Msa1353500:intron | 50.0% |
| ACACCACGTGTCCCAAAACA+GGG | + | tig0013542:26833-26852 | Msa1353500:intergenic | 50.0% | |
| GTAACCTAGGGTTCGAACTC+CGG | - | tig0013542:27348-27367 | Msa1353500:intron | 50.0% | |
| GGAGCACATCCCAAGAAACA+TGG | + | tig0013542:27594-27613 | Msa1353500:intergenic | 50.0% | |
| TGTTACAGGTTACGGAGCCT+TGG | - | tig0013542:27946-27965 | Msa1353500:intron | 50.0% | |
| ! | CTCGGATTGAGGTACCCACA+CGG | - | tig0013542:24330-24349 | Msa1353500:CDS | 55.0% |
| TTTCCACTGCCAGTGAGACC+TGG | + | tig0013542:26529-26548 | Msa1353500:intergenic | 55.0% | |
| CACCACGTGTCCCAAAACAG+GGG | + | tig0013542:26832-26851 | Msa1353500:intergenic | 55.0% | |
| GACACCACGTGTCCCAAAAC+AGG | + | tig0013542:26834-26853 | Msa1353500:intergenic | 55.0% | |
| ATGACCGGAGTTCGAACCCT+AGG | + | tig0013542:27355-27374 | Msa1353500:intergenic | 55.0% | |
| CTGGTGGCTCATCGACACAT+TGG | - | tig0013542:28033-28052 | Msa1353500:intron | 55.0% | |
| GTGGCTCATCGACACATTGG+TGG | - | tig0013542:28036-28055 | Msa1353500:intron | 55.0% | |
| CGAACTCCGGTCATGACGTC+CGG | - | tig0013542:27361-27380 | Msa1353500:intron | 60.0% | |
| GTTAGGCCGGACGTCATGAC+CGG | + | tig0013542:27370-27389 | Msa1353500:intergenic | 60.0% | |
| CGATGGTGCAGCGTTGCTCA+TGG | - | tig0013542:28220-28239 | Msa1353500:CDS | 60.0% | |
| GGTCCAGGTCTCACTGGCAG+TGG | - | tig0013542:26523-26542 | Msa1353500:CDS | 65.0% | |
| !!! | GGCCCCTGTTTTGGGACACG+TGG | - | tig0013542:26827-26846 | Msa1353500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013542 | gene | 24118 | 28421 | 24118 | ID=Msa1353500;Name=Msa1353500 |
| tig0013542 | mRNA | 24118 | 28421 | 24118 | ID=Msa1353500-mRNA-1;Parent=Msa1353500;Name=Msa1353500-mRNA-1;_AED=0.18;_eAED=0.19;_QI=145|0.5|0.42|1|0.5|0.71|7|0|417 |
| tig0013542 | exon | 24118 | 24534 | 24118 | ID=Msa1353500-mRNA-1:exon:8718;Parent=Msa1353500-mRNA-1 |
| tig0013542 | exon | 24769 | 25014 | 24769 | ID=Msa1353500-mRNA-1:exon:8717;Parent=Msa1353500-mRNA-1 |
| tig0013542 | exon | 25295 | 25404 | 25295 | ID=Msa1353500-mRNA-1:exon:8716;Parent=Msa1353500-mRNA-1 |
| tig0013542 | exon | 25959 | 26046 | 25959 | ID=Msa1353500-mRNA-1:exon:8715;Parent=Msa1353500-mRNA-1 |
| tig0013542 | exon | 26145 | 26357 | 26145 | ID=Msa1353500-mRNA-1:exon:8714;Parent=Msa1353500-mRNA-1 |
| tig0013542 | exon | 26476 | 26577 | 26476 | ID=Msa1353500-mRNA-1:exon:8713;Parent=Msa1353500-mRNA-1 |
| tig0013542 | exon | 28199 | 28421 | 28199 | ID=Msa1353500-mRNA-1:exon:8712;Parent=Msa1353500-mRNA-1 |
| tig0013542 | five_prime_UTR | 28277 | 28421 | 28277 | ID=Msa1353500-mRNA-1:five_prime_utr;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 28199 | 28276 | 28199 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 26476 | 26577 | 26476 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 26145 | 26357 | 26145 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 25959 | 26046 | 25959 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 25295 | 25404 | 25295 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 24769 | 25014 | 24769 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| tig0013542 | CDS | 24118 | 24534 | 24118 | ID=Msa1353500-mRNA-1:cds;Parent=Msa1353500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
