AlfalfaGEDB | Msa1353680

M. sativa cultivar zhongmu-4 / Msa1353680

KEGG: K01177
GO: GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700
PFAM: PF01373.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353680	XP_003611409.1	100.000	150	0	0	1	150	100	249	3.44e-104	318

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353680	sp\|O23553\|BAM3_ARATH	87.248	149	19	0	1	149	99	247	3.45e-93	283

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353680	G7JYN3	100.000	150	0	0	1	150	100	249	1.64e-104	318

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0713210	Msa1353680	0.805096	1.574348e-49	-8.615850e-47
Msa0755090	Msa1353680	0.822019	2.963213e-53	-8.615850e-47
Msa0797000	Msa1353680	0.808850	2.529525e-50	-8.615850e-47
Msa0834460	Msa1353680	0.810022	1.417346e-50	-8.615850e-47
Msa1353680	Msa1356180	0.907156	6.869629e-81	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353680	MtrunA17_Chr5g0400001	100.000	150	0	0	1	150	100	249	3.16e-108	318
Msa1353680	MtrunA17_Chr5g0399991	100.000	150	0	0	1	150	102	251	6.13e-108	318
Msa1353680	MtrunA17_Chr4g0055281	88.591	149	17	0	1	149	91	239	1.81e-96	288
Msa1353680	MtrunA17_Chr6g0481031	62.667	150	56	0	1	150	119	268	3.48e-69	219
Msa1353680	MtrunA17_Chr8g0388651	55.102	147	66	0	3	149	94	240	9.38e-53	175
Msa1353680	MtrunA17_Chr2g0323051	55.319	141	63	0	11	151	109	249	2.19e-52	175
Msa1353680	MtrunA17_Chr4g0023601	50.694	144	71	0	10	153	35	178	5.02e-52	172
Msa1353680	MtrunA17_Chr7g0247631	55.882	136	60	0	15	150	292	427	5.18e-47	162
Msa1353680	MtrunA17_Chr5g0408851	42.177	147	85	0	4	150	234	380	5.63e-36	131
Msa1353680	MtrunA17_Chr2g0286431	39.726	146	83	1	5	150	101	241	1.62e-33	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353680	AT4G17090.1	87.248	149	19	0	1	149	99	247	3.51e-94	283
Msa1353680	AT3G23920.1	64.000	150	54	0	1	150	119	268	6.26e-68	216
Msa1353680	AT4G15210.2	48.276	145	74	1	9	152	35	179	1.90e-47	159
Msa1353680	AT4G15210.1	48.276	145	74	1	9	152	35	179	4.95e-47	159
Msa1353680	AT2G45880.1	54.412	136	62	0	15	150	275	410	8.07e-46	159
Msa1353680	AT4G00490.1	49.333	150	76	0	1	150	108	257	1.04e-45	157
Msa1353680	AT2G32290.1	51.163	129	63	0	23	151	113	241	8.85e-45	155
Msa1353680	AT4G15210.3	49.206	126	64	0	27	152	1	126	1.74e-43	149
Msa1353680	AT4G15210.4	49.206	126	64	0	27	152	1	126	1.74e-43	149
Msa1353680	AT5G55700.1	41.781	146	85	0	4	149	112	257	1.60e-36	132

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Find 60 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCAACTCTGCAGTTA+AGG	0.394173	tig0013921:+5121	Msa1353680:five_prime_UTR
AAGGAGTAATGGTTGATGCT+TGG	0.565190	tig0013921:+5320	Msa1353680:CDS
AATAAGGAAGAACCCTGAGC+TGG	0.576300	tig0013921:+5716	Msa1353680:CDS
AATAATCTGTGAATCTATCA+CGG	0.584013	tig0013921:-5857	None:intergenic
AATCCCGAATACATCTCGTT+GGG	0.532457	tig0013921:+5765	Msa1353680:CDS
AATGGCAACATCACAAACAC+CGG	0.660873	tig0013921:-5215	None:intergenic
ACACAGACAAATTAGGGAGG+AGG	0.571216	tig0013921:+5742	Msa1353680:CDS
ACAGCCCAACGAGATGTATT+CGG	0.366361	tig0013921:-5769	None:intergenic
ACCAACTTGGTCTTCAATTT+TGG	0.089455	tig0013921:+5906	Msa1353680:CDS
ACGGAAGCTTCTCATGTAAT+CGG	0.432165	tig0013921:-5838	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGAGCAAACACTAAAAA+TGG	+	tig0013921:4934-4953	Msa1353680:five_prime_UTR	30.0%
TGAAGCAAAGGTTTGAATTT+CGG	-	tig0013921:5056-5075	None:intergenic	30.0%
CAGTTAAGGAAAACAAGAAA+TGG	+	tig0013921:5135-5154	Msa1353680:five_prime_UTR	30.0%
ATGGTCCTATGAAGTATAAT+TGG	+	tig0013921:5362-5381	Msa1353680:CDS	30.0%
TGGTCCTATGAAGTATAATT+GGG	+	tig0013921:5363-5382	Msa1353680:CDS	30.0%
ACACTAAATAGAGCCTAAAT+TGG	-	tig0013921:5533-5552	None:intergenic	30.0%
TGGTTTACACAGACAAATTA+GGG	+	tig0013921:5736-5755	Msa1353680:CDS	30.0%
AGTAGAGCAAACACTAAAAA+TGG	+	tig0013921:4934-4953	Msa1353680:five_prime_UTR	30.0%
TGAAGCAAAGGTTTGAATTT+CGG	-	tig0013921:5056-5075	None:intergenic	30.0%
CAGTTAAGGAAAACAAGAAA+TGG	+	tig0013921:5135-5154	Msa1353680:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0013921	gene	4925	5958	4925	ID=Msa1353680;Name=Msa1353680
tig0013921	mRNA	4925	5958	4925	ID=Msa1353680-mRNA-1;Parent=Msa1353680;Name=Msa1353680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=325\|1\|1\|1\|1\|1\|2\|17\|164
tig0013921	exon	4925	5488	4925	ID=Msa1353680-mRNA-1:exon:8770;Parent=Msa1353680-mRNA-1
tig0013921	exon	5686	5958	5686	ID=Msa1353680-mRNA-1:exon:8771;Parent=Msa1353680-mRNA-1
tig0013921	five_prime_UTR	4925	5249	4925	ID=Msa1353680-mRNA-1:five_prime_utr;Parent=Msa1353680-mRNA-1
tig0013921	CDS	5250	5488	5250	ID=Msa1353680-mRNA-1:cds;Parent=Msa1353680-mRNA-1
tig0013921	CDS	5686	5941	5686	ID=Msa1353680-mRNA-1:cds;Parent=Msa1353680-mRNA-1
tig0013921	three_prime_UTR	5942	5958	5942	ID=Msa1353680-mRNA-1:three_prime_utr;Parent=Msa1353680-mRNA-1

Gene Sequence

>Msa1353680

ATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAGAGTGCTGGAGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAAGTATAATTGGGAAGCTTATGCTGAGCTTGTTCAAATGGTACAAAAGCATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCTTGCAGCATACCTTTACCTCCATGGGTGCTTGAAGAAATAAGGAAGAACCCTGAGCTGGTTTACACAGACAAATTAGGGAGGAGGAATCCCGAATACATCTCGTTGGGCTGTGATTCAGTGCCTGTTCTAGCTGGAAGAACTCCTCTTCAGGTCTACTCCGATTACATGAGAAGCTTCCGTGATAGATTCACAGATTATTTGGGCAATGTCATCATAGTAAGTTTCACCAACTTGGTCTTCAATTTTGGGGTTACTTGGTAA

Protein sequence

>Msa1353680

MGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEIRKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIVSFTNLVFNFGVTW*