Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713210 | XP_003611409.1 | 90.761 | 552 | 14 | 1 | 1 | 552 | 1 | 515 | 0.0 | 1030 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713210 | sp|O23553|BAM3_ARATH | 66.606 | 554 | 137 | 6 | 1 | 546 | 1 | 514 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713210 | G7JYN3 | 90.761 | 552 | 14 | 1 | 1 | 552 | 1 | 515 | 0.0 | 1030 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044180 | Msa0713210 | 0.803354 | 3.628811e-49 | -8.615850e-47 |
| Msa0096020 | Msa0713210 | 0.850519 | 1.611343e-60 | -8.615850e-47 |
| Msa0610360 | Msa0713210 | 0.801610 | 8.300474e-49 | -8.615850e-47 |
| Msa0610770 | Msa0713210 | 0.804211 | 2.408292e-49 | -8.615850e-47 |
| Msa0614980 | Msa0713210 | 0.874126 | 8.614890e-68 | -8.615850e-47 |
| Msa0621780 | Msa0713210 | 0.860465 | 2.026571e-63 | -8.615850e-47 |
| Msa0629440 | Msa0713210 | -0.816504 | 5.344873e-52 | -8.615850e-47 |
| Msa0644770 | Msa0713210 | -0.812878 | 3.396867e-51 | -8.615850e-47 |
| Msa0650640 | Msa0713210 | 0.852355 | 4.874320e-61 | -8.615850e-47 |
| Msa0650650 | Msa0713210 | 0.809112 | 2.223130e-50 | -8.615850e-47 |
| Msa0650740 | Msa0713210 | 0.810142 | 1.335125e-50 | -8.615850e-47 |
| Msa0650890 | Msa0713210 | 0.800785 | 1.224472e-48 | -8.615850e-47 |
| Msa0651310 | Msa0713210 | 0.805442 | 1.332575e-49 | -8.615850e-47 |
| Msa0667070 | Msa0713210 | -0.808484 | 3.028005e-50 | -8.615850e-47 |
| Msa0693490 | Msa0713210 | 0.804667 | 1.935440e-49 | -8.615850e-47 |
| Msa0713210 | Msa0713220 | 0.932974 | 3.798364e-95 | -8.615850e-47 |
| Msa0713210 | Msa0713230 | 0.913317 | 7.077032e-84 | -8.615850e-47 |
| Msa0713210 | Msa0754350 | 0.871077 | 8.992454e-67 | -8.615850e-47 |
| Msa0713210 | Msa0755080 | 0.874804 | 5.069611e-68 | -8.615850e-47 |
| Msa0713210 | Msa0755090 | 0.889364 | 2.588110e-73 | -8.615850e-47 |
| Msa0713210 | Msa0790640 | 0.830296 | 3.180579e-55 | -8.615850e-47 |
| Msa0713210 | Msa0795710 | 0.860758 | 1.652395e-63 | -8.615850e-47 |
| Msa0713210 | Msa0796950 | 0.862505 | 4.832611e-64 | -8.615850e-47 |
| Msa0713210 | Msa0797000 | 0.906731 | 1.084385e-80 | -8.615850e-47 |
| Msa0713210 | Msa0833450 | 0.842266 | 2.871142e-58 | -8.615850e-47 |
| Msa0713210 | Msa0834450 | 0.886382 | 3.591165e-72 | -8.615850e-47 |
| Msa0713210 | Msa0834460 | 0.896241 | 4.457619e-76 | -8.615850e-47 |
| Msa0713210 | Msa0844790 | 0.804933 | 1.702484e-49 | -8.615850e-47 |
| Msa0713210 | Msa0964580 | 0.806407 | 8.351985e-50 | -8.615850e-47 |
| Msa0713210 | Msa0984000 | 0.811126 | 8.179968e-51 | -8.615850e-47 |
| Msa0713210 | Msa1053690 | 0.810415 | 1.165972e-50 | -8.615850e-47 |
| Msa0713210 | Msa1075590 | 0.806532 | 7.857998e-50 | -8.615850e-47 |
| Msa0713210 | Msa1137090 | 0.805272 | 1.445913e-49 | -8.615850e-47 |
| Msa0713210 | Msa1172360 | 0.822951 | 1.799225e-53 | -8.615850e-47 |
| Msa0713210 | Msa1206830 | 0.816172 | 6.340863e-52 | -8.615850e-47 |
| Msa0713210 | Msa1211390 | 0.807770 | 4.297340e-50 | -8.615850e-47 |
| Msa0713210 | Msa1219780 | -0.806571 | 7.709919e-50 | -8.615850e-47 |
| Msa0713210 | Msa1248220 | 0.827876 | 1.227897e-54 | -8.615850e-47 |
| Msa0713210 | Msa1257100 | 0.804592 | 2.006512e-49 | -8.615850e-47 |
| Msa0713210 | Msa1272950 | 0.814049 | 1.877384e-51 | -8.615850e-47 |
| Msa0713210 | Msa1306190 | 0.802348 | 5.853918e-49 | -8.615850e-47 |
| Msa0713210 | Msa1349810 | 0.824673 | 7.104725e-54 | -8.615850e-47 |
| Msa0713210 | Msa1353670 | 0.834440 | 2.993231e-56 | -8.615850e-47 |
| Msa0713210 | Msa1353680 | 0.805096 | 1.574348e-49 | -8.615850e-47 |
| Msa0713210 | Msa1354090 | 0.802477 | 5.506259e-49 | -8.615850e-47 |
| Msa0713210 | Msa1356180 | 0.890323 | 1.093025e-73 | -8.615850e-47 |
| Msa0713210 | Msa1363690 | -0.806824 | 6.817466e-50 | -8.615850e-47 |
| Msa0713210 | Msa1370930 | -0.800662 | 1.297337e-48 | -8.615850e-47 |
| Msa0713210 | Msa1387520 | 0.805101 | 1.570323e-49 | -8.615850e-47 |
| Msa0713210 | Msa1403950 | 0.852608 | 4.128360e-61 | -8.615850e-47 |
| Msa0713210 | Msa1406990 | 0.803465 | 3.440552e-49 | -8.615850e-47 |
| Msa0713210 | Msa1407210 | -0.802042 | 6.768288e-49 | -8.615850e-47 |
| Msa0154220 | Msa0713210 | 0.812612 | 3.883149e-51 | -8.615850e-47 |
| Msa0154240 | Msa0713210 | 0.814030 | 1.896033e-51 | -8.615850e-47 |
| Msa0154270 | Msa0713210 | 0.823322 | 1.474578e-53 | -8.615850e-47 |
| Msa0197180 | Msa0713210 | 0.813042 | 3.126656e-51 | -8.615850e-47 |
| Msa0368780 | Msa0713210 | 0.801591 | 8.375411e-49 | -8.615850e-47 |
| Msa0376340 | Msa0713210 | 0.832313 | 1.015149e-55 | -8.615850e-47 |
| Msa0388200 | Msa0713210 | 0.805472 | 1.313314e-49 | -8.615850e-47 |
| Msa0401340 | Msa0713210 | 0.802925 | 4.450286e-49 | -8.615850e-47 |
| Msa0424780 | Msa0713210 | 0.817136 | 3.856414e-52 | -8.615850e-47 |
| Msa0448120 | Msa0713210 | 0.803580 | 3.257797e-49 | -8.615850e-47 |
| Msa0238940 | Msa0713210 | 0.807939 | 3.955708e-50 | -8.615850e-47 |
| Msa0316750 | Msa0713210 | 0.824925 | 6.196431e-54 | -8.615850e-47 |
| Msa0501510 | Msa0713210 | 0.848663 | 5.308224e-60 | -8.615850e-47 |
| Msa0516160 | Msa0713210 | 0.823433 | 1.388945e-53 | -8.615850e-47 |
| Msa0521570 | Msa0713210 | 0.805924 | 1.055552e-49 | -8.615850e-47 |
| Msa0549760 | Msa0713210 | 0.804712 | 1.893570e-49 | -8.615850e-47 |
| Msa0555960 | Msa0713210 | 0.800068 | 1.713683e-48 | -8.615850e-47 |
| Msa0579340 | Msa0713210 | 0.815602 | 8.497649e-52 | -8.615850e-47 |
| Msa0579350 | Msa0713210 | 0.822843 | 1.906735e-53 | -8.615850e-47 |
| Msa0579360 | Msa0713210 | 0.857080 | 2.081956e-62 | -8.615850e-47 |
| Msa0580540 | Msa0713210 | 0.863164 | 3.026399e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713210 | MtrunA17_Chr5g0400001 | 90.761 | 552 | 14 | 1 | 1 | 552 | 1 | 515 | 0.0 | 1030 |
| Msa0713210 | MtrunA17_Chr5g0399991 | 86.885 | 549 | 33 | 2 | 1 | 547 | 1 | 512 | 0.0 | 979 |
| Msa0713210 | MtrunA17_Chr4g0055281 | 71.067 | 553 | 108 | 4 | 1 | 547 | 1 | 507 | 0.0 | 806 |
| Msa0713210 | MtrunA17_Chr6g0481031 | 58.386 | 471 | 147 | 3 | 87 | 545 | 106 | 539 | 0.0 | 589 |
| Msa0713210 | MtrunA17_Chr4g0023601 | 45.860 | 471 | 203 | 4 | 85 | 542 | 11 | 442 | 4.28e-148 | 435 |
| Msa0713210 | MtrunA17_Chr2g0323051 | 45.975 | 472 | 203 | 4 | 84 | 542 | 83 | 515 | 3.25e-142 | 423 |
| Msa0713210 | MtrunA17_Chr8g0388651 | 43.149 | 489 | 223 | 7 | 79 | 550 | 67 | 517 | 4.47e-132 | 395 |
| Msa0713210 | MtrunA17_Chr7g0247631 | 41.955 | 491 | 231 | 7 | 65 | 542 | 243 | 692 | 1.72e-114 | 355 |
| Msa0713210 | MtrunA17_Chr2g0286431 | 36.458 | 480 | 258 | 5 | 69 | 543 | 65 | 502 | 1.51e-99 | 311 |
| Msa0713210 | MtrunA17_Chr5g0408851 | 35.130 | 501 | 268 | 10 | 57 | 545 | 189 | 644 | 2.68e-96 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713210 | AT4G17090.1 | 66.606 | 554 | 137 | 6 | 1 | 546 | 1 | 514 | 0.0 | 761 |
| Msa0713210 | AT3G23920.1 | 59.408 | 473 | 141 | 3 | 87 | 545 | 106 | 541 | 0.0 | 583 |
| Msa0713210 | AT4G15210.1 | 44.820 | 473 | 206 | 6 | 85 | 542 | 12 | 444 | 2.49e-140 | 415 |
| Msa0713210 | AT4G15210.2 | 47.541 | 427 | 182 | 5 | 85 | 509 | 12 | 398 | 2.66e-138 | 407 |
| Msa0713210 | AT2G32290.1 | 44.703 | 472 | 208 | 6 | 84 | 542 | 75 | 506 | 3.68e-133 | 400 |
| Msa0713210 | AT4G00490.1 | 41.935 | 527 | 248 | 8 | 37 | 548 | 45 | 528 | 4.95e-133 | 398 |
| Msa0713210 | AT4G15210.3 | 45.012 | 431 | 183 | 5 | 126 | 542 | 1 | 391 | 6.68e-130 | 387 |
| Msa0713210 | AT4G15210.4 | 45.012 | 431 | 183 | 5 | 126 | 542 | 1 | 391 | 6.68e-130 | 387 |
| Msa0713210 | AT5G55700.1 | 40.632 | 475 | 228 | 5 | 86 | 543 | 91 | 528 | 3.40e-124 | 375 |
| Msa0713210 | AT2G45880.1 | 40.919 | 479 | 229 | 7 | 74 | 539 | 235 | 672 | 1.04e-112 | 350 |
| Msa0713210 | AT5G55700.2 | 40.934 | 364 | 165 | 4 | 193 | 543 | 39 | 365 | 5.32e-92 | 286 |
| Msa0713210 | AT5G45300.2 | 35.484 | 496 | 264 | 10 | 62 | 545 | 229 | 680 | 1.01e-90 | 293 |
| Msa0713210 | AT5G45300.1 | 35.484 | 496 | 264 | 10 | 62 | 545 | 231 | 682 | 1.18e-90 | 293 |
| Msa0713210 | AT5G45300.3 | 35.484 | 496 | 264 | 10 | 62 | 545 | 245 | 696 | 1.91e-90 | 293 |
| Msa0713210 | AT5G18670.1 | 35.560 | 464 | 244 | 5 | 87 | 543 | 87 | 502 | 1.23e-83 | 270 |
Find 140 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTCACAGATTATT+TGG | 0.131732 | 5_1:+5320893 | Msa0713210:CDS |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_1:-5321580 | None:intergenic |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5_1:+5322496 | Msa0713210:three_prime_UTR |
| ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | 5_1:+5320395 | Msa0713210:CDS |
| CTGGTTTACACAGACAAATT+AGG | 0.254676 | 5_1:+5320768 | Msa0713210:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5_1:+5321783 | Msa0713210:intron |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5_1:-5322001 | None:intergenic |
| TGAAACAAAGGTTTGAATTT+CGG | 0.289303 | 5_1:-5320085 | None:intergenic |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_1:+5321348 | Msa0713210:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_1:+5321595 | Msa0713210:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_1:+5320363 | Msa0713210:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5_1:+5321913 | Msa0713210:CDS |
| GGTTGCTTGAGGGTGAAAAT+TGG | 0.313491 | 5_1:+5322391 | Msa0713210:CDS |
| AAAGTTTCACTCCACTTGTT+TGG | 0.314238 | 5_1:-5322014 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+TGG | 0.316730 | 5_1:-5321332 | None:intergenic |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_1:+5321874 | Msa0713210:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.321608 | 5_1:+5322466 | Msa0713210:exon |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_1:-5321360 | None:intergenic |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_1:-5321607 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_1:+5321342 | Msa0713210:CDS |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_1:+5321589 | Msa0713210:CDS |
| GAAGCATCAGCTGCAGCAAT+TGG | 0.348122 | 5_1:+5321805 | Msa0713210:CDS |
| CATGGGTGCTTGAAGAAATA+AGG | 0.350399 | 5_1:+5320733 | Msa0713210:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5_1:+5320500 | Msa0713210:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5_1:-5322138 | None:intergenic |
| ACAGCCCAACGAGATGTATT+CGG | 0.366361 | 5_1:-5320802 | None:intergenic |
| CAGGAAATTCAAGTGGGACT+TGG | 0.366525 | 5_1:+5321279 | Msa0713210:intron |
| CAGGAAATTCAAGTGGGACT+TGG | 0.366525 | 5_1:+5321526 | Msa0713210:intron |
| GATAGATTCACAGATTATTT+GGG | 0.369481 | 5_1:+5320894 | Msa0713210:CDS |
| GGTGAACAATTAGCATGATT+AGG | 0.375380 | 5_1:-5322213 | None:intergenic |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_1:-5320265 | None:intergenic |
| TGGTTTACACAGACAAATTA+GGG | 0.392347 | 5_1:+5320769 | Msa0713210:CDS |
| AAACACCAACTCTGCAGTTA+AGG | 0.394173 | 5_1:+5320153 | Msa0713210:CDS |
| CAGTTAAGGAAAACAAGAAA+TGG | 0.395175 | 5_1:+5320167 | Msa0713210:CDS |
| AGCTGGAAGAACTCCTCTTC+AGG | 0.398700 | 5_1:+5320842 | Msa0713210:CDS |
| ATGGAGATTTCTTCCTTGAA+TGG | 0.404338 | 5_1:+5321932 | Msa0713210:CDS |
| TTGTCTGTGTAAACCAGCTC+AGG | 0.410476 | 5_1:-5320762 | None:intergenic |
| GCTTCCCAATTATACTTCAT+AGG | 0.415265 | 5_1:-5320400 | None:intergenic |
| CAGCCCAACGAGATGTATTC+GGG | 0.415616 | 5_1:-5320801 | None:intergenic |
| CTAGCATACCTTTACCTCCA+TGG | 0.426539 | 5_1:+5320715 | Msa0713210:intron |
| AGATATGATTCAAATGCTTA+TGG | 0.427696 | 5_1:+5322312 | Msa0713210:CDS |
| ACGGAAGCCTCTCATGTAAT+CGG | 0.432165 | 5_1:-5320871 | None:intergenic |
| AGCAATGAATGCTAGTTTGA+TGG | 0.437255 | 5_1:+5320309 | Msa0713210:CDS |
| ACTTGCTGGTGAGAATGCTT+TGG | 0.442476 | 5_1:+5322287 | Msa0713210:CDS |
| GGAGTTCTTCCAGCTAGAAC+AGG | 0.442830 | 5_1:-5320834 | None:intergenic |
| TGAAAATTGGAGGCAATTTG+TGG | 0.443560 | 5_1:+5322404 | Msa0713210:CDS |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_1:-5321579 | None:intergenic |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5_1:+5322179 | Msa0713210:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5_1:+5322484 | Msa0713210:three_prime_UTR |
| TAGCATACCTTTACCTCCAT+GGG | 0.456896 | 5_1:+5320716 | Msa0713210:intron |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5_1:-5321377 | None:intergenic |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5_1:-5321624 | None:intergenic |
| ACTTGATTAACCAATCCTTC+TGG | 0.458432 | 5_1:-5322234 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5_1:+5322258 | Msa0713210:CDS |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_1:-5321571 | None:intergenic |
| GATTCAGTGCCTGTTCTAGC+TGG | 0.467117 | 5_1:+5320825 | Msa0713210:CDS |
| TCAAGCACCCATGGAGGTAA+AGG | 0.469083 | 5_1:-5320723 | None:intergenic |
| TTTCGGACAAGAAACTTTGT+TGG | 0.472635 | 5_1:-5320068 | None:intergenic |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.475342 | 5_1:+5320334 | Msa0713210:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_1:+5320357 | Msa0713210:CDS |
| TTTCAAAATCTGATTCATAT+GGG | 0.479314 | 5_1:+5322467 | Msa0713210:exon |
| TGGTCCTATGAAGTATAATT+GGG | 0.480087 | 5_1:+5320396 | Msa0713210:CDS |
| ACCATGAAACTGATGGAACT+TGG | 0.482847 | 5_1:+5321331 | Msa0713210:CDS |
| CCATCAGTTTCATGGTAAGA+TGG | 0.483055 | 5_1:-5321324 | None:intergenic |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5_1:+5322273 | Msa0713210:CDS |
| CTTATTTCTTCAAGCACCCA+TGG | 0.485962 | 5_1:-5320732 | None:intergenic |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5_1:+5322170 | Msa0713210:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_1:+5321578 | Msa0713210:CDS |
| ATTGGTTAATCAAGTGAAGA+TGG | 0.500028 | 5_1:+5322242 | Msa0713210:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5_1:+5322224 | Msa0713210:CDS |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_1:+5320265 | Msa0713210:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_1:+5320356 | Msa0713210:CDS |
| TTGATGGCATTGAAGAGTGC+TGG | 0.508850 | 5_1:+5320325 | Msa0713210:CDS |
| AGTTAAGGAAAACAAGAAAT+GGG | 0.509470 | 5_1:+5320168 | Msa0713210:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_1:+5320487 | Msa0713210:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_1:+5320423 | Msa0713210:CDS |
| GTTTGCTTGAGTACCATTCA+AGG | 0.524728 | 5_1:-5321945 | None:intergenic |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_1:+5320358 | Msa0713210:CDS |
| CATGCAACTGAATTAACTGC+TGG | 0.532417 | 5_1:+5322081 | Msa0713210:CDS |
| AATCCCGAATACATCTCGTT+GGG | 0.532457 | 5_1:+5320798 | Msa0713210:CDS |
| AAGCATCAGCTGCAGCAATT+GGG | 0.535892 | 5_1:+5321806 | Msa0713210:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_1:+5321571 | Msa0713210:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_1:+5320264 | Msa0713210:CDS |
| ATAAACAAGAGGTTGCTTGA+GGG | 0.540389 | 5_1:+5322381 | Msa0713210:CDS |
| TGCTTGAGGGTGAAAATTGG+AGG | 0.540642 | 5_1:+5322394 | Msa0713210:CDS |
| CCATCTTACCATGAAACTGA+TGG | 0.540693 | 5_1:+5321324 | Msa0713210:CDS |
| CAGCAATTGGGAAGAAAGAG+TGG | 0.543241 | 5_1:+5321818 | Msa0713210:CDS |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5_1:+5320342 | Msa0713210:CDS |
| TGGACACATTAAAGGAATCA+AGG | 0.547128 | 5_1:+5322504 | Msa0713210:three_prime_UTR |
| CTTATTTAAGAATAAACAAG+AGG | 0.556225 | 5_1:+5322370 | Msa0713210:CDS |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5_1:+5322003 | Msa0713210:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_1:+5322108 | Msa0713210:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_1:+5320353 | Msa0713210:CDS |
| GAATCCCGAATACATCTCGT+TGG | 0.567655 | 5_1:+5320797 | Msa0713210:CDS |
| ACACAGACAAATTAGGGAGG+AGG | 0.571216 | 5_1:+5320775 | Msa0713210:CDS |
| AATAAACAAGAGGTTGCTTG+AGG | 0.573981 | 5_1:+5322380 | Msa0713210:CDS |
| CATGCTAATTGTTCACCAGA+AGG | 0.574244 | 5_1:+5322219 | Msa0713210:CDS |
| AAGTGGGACTTGGTCCATGT+GGG | 0.575092 | 5_1:+5321289 | Msa0713210:CDS |
| AAGTGGGACTTGGTCCATGT+GGG | 0.575092 | 5_1:+5321536 | Msa0713210:CDS |
| AATAAGGAAGAACCCTGAGC+TGG | 0.576300 | 5_1:+5320749 | Msa0713210:CDS |
| TAATCGGAGTAGACCTGAAG+AGG | 0.578784 | 5_1:-5320855 | None:intergenic |
| CTGCTGGTTACTATAACACA+AGG | 0.578850 | 5_1:+5322097 | Msa0713210:CDS |
| TGCTGACTCAAATAGAGTAC+CGG | 0.579953 | 5_1:+5320228 | Msa0713210:CDS |
| CAAGTGGGACTTGGTCCATG+TGG | 0.580992 | 5_1:+5321288 | Msa0713210:CDS |
| CAAGTGGGACTTGGTCCATG+TGG | 0.580992 | 5_1:+5321535 | Msa0713210:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5_1:+5322144 | Msa0713210:CDS |
| AATAATCTGTGAATCTATCA+CGG | 0.584013 | 5_1:-5320890 | None:intergenic |
| TTTGCTTTGAGATGAAACAA+AGG | 0.587033 | 5_1:-5320097 | None:intergenic |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5_1:+5321829 | Msa0713210:CDS |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5_1:+5321519 | Msa0713210:intron |
| GTCTGATGGTGGTAAACCAA+AGG | 0.594159 | 5_1:+5322443 | Msa0713210:CDS |
| TCATTTGCAGGAAATTCAAG+TGG | 0.596130 | 5_1:+5321272 | Msa0713210:intron |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_1:-5321303 | None:intergenic |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_1:-5321550 | None:intergenic |
| AGTGGGACTTGGTCCATGTG+GGG | 0.599653 | 5_1:+5321290 | Msa0713210:CDS |
| AGTGGGACTTGGTCCATGTG+GGG | 0.599653 | 5_1:+5321537 | Msa0713210:CDS |
| ACAAGTGGACCACATGACTC+AGG | 0.607814 | 5_1:+5321844 | Msa0713210:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5_1:+5322429 | Msa0713210:CDS |
| CATTTGCAGGAAATTCAAGT+GGG | 0.613333 | 5_1:+5321273 | Msa0713210:intron |
| AGCAATTGGGAAGAAAGAGT+GGG | 0.613841 | 5_1:+5321819 | Msa0713210:CDS |
| GTACTTCACAAACAATTACA+AGG | 0.615740 | 5_1:+5322608 | Msa0713210:three_prime_UTR |
| GTCTACTCCGATTACATGAG+AGG | 0.616581 | 5_1:+5320864 | Msa0713210:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_1:+5321958 | Msa0713210:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5_1:+5322432 | Msa0713210:CDS |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5_1:+5321520 | Msa0713210:intron |
| TGTCTGTGTAAACCAGCTCA+GGG | 0.638501 | 5_1:-5320761 | None:intergenic |
| TTGTATTGACCTGAGTCATG+TGG | 0.648053 | 5_1:-5321853 | None:intergenic |
| TCGTGGTTATGAACAATCGA+TGG | 0.648491 | 5_1:-5320205 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_1:-5320247 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_1:+5320268 | Msa0713210:CDS |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5_1:+5320129 | Msa0713210:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5_1:+5322261 | Msa0713210:CDS |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5_1:+5321867 | Msa0713210:CDS |
| ATTTCTTCAAGCACCCATGG+AGG | 0.686996 | 5_1:-5320729 | None:intergenic |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_1:+5321371 | Msa0713210:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_1:+5321618 | Msa0713210:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_1:+5320255 | Msa0713210:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.706843 | 5_1:+5321820 | Msa0713210:CDS |
| CTCTATTTGAGTCAGCATCG+TGG | 0.708875 | 5_1:-5320222 | None:intergenic |
| TTTACACAGACAAATTAGGG+AGG | 0.734523 | 5_1:+5320772 | Msa0713210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATCATATTTTTTATTTT+TGG | - | chr5_1:5320673-5320692 | None:intergenic | 10.0% |
| !! | AATTAAGAATTTAATATACT+TGG | + | chr5_1:5320973-5320992 | Msa0713210:intron | 10.0% |
| !! | ACATTCAATTTGTCATATTA+AGG | + | chr5_1:5321148-5321167 | Msa0713210:intron | 20.0% |
| !!! | GTCTAACATTAATATGATTT+TGG | - | chr5_1:5321439-5321458 | None:intergenic | 20.0% |
| !!! | AAACAATTTGGTCTTAATTT+TGG | - | chr5_1:5321505-5321524 | None:intergenic | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | - | chr5_1:5321766-5321785 | None:intergenic | 20.0% |
| !! | CTTATTTAAGAATAAACAAG+AGG | + | chr5_1:5322370-5322389 | Msa0713210:CDS | 20.0% |
| !! | TTTCAAAATCTGATTCATAT+GGG | + | chr5_1:5322467-5322486 | Msa0713210:exon | 20.0% |
| !!! | TGTTTCTTTTTTGTGAATGA+AGG | - | chr5_1:5320017-5320036 | None:intergenic | 25.0% |
| ! | TGAAACAAAGGTTTGAATTT+CGG | - | chr5_1:5320088-5320107 | None:intergenic | 25.0% |
| ! | AGTTAAGGAAAACAAGAAAT+GGG | + | chr5_1:5320168-5320187 | Msa0713210:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | + | chr5_1:5320550-5320569 | Msa0713210:intron | 25.0% |
| ! | AATAATCTGTGAATCTATCA+CGG | - | chr5_1:5320893-5320912 | None:intergenic | 25.0% |
| ! | TGATAGATTCACAGATTATT+TGG | + | chr5_1:5320893-5320912 | Msa0713210:CDS | 25.0% |
| ! | GATAGATTCACAGATTATTT+GGG | + | chr5_1:5320894-5320913 | Msa0713210:CDS | 25.0% |
| ! | TTAAAACCAAATTCATTTGC+AGG | + | chr5_1:5321260-5321279 | Msa0713210:intron | 25.0% |
| !! | GTCTAACATCAATATGATTT+TGG | - | chr5_1:5321686-5321705 | None:intergenic | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | + | chr5_1:5322170-5322189 | Msa0713210:CDS | 25.0% |
| ! | AGATATGATTCAAATGCTTA+TGG | + | chr5_1:5322312-5322331 | Msa0713210:CDS | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | + | chr5_1:5322466-5322485 | Msa0713210:exon | 25.0% |
| AGTAGAGCAAACACTAAAAA+TGG | + | chr5_1:5319967-5319986 | Msa0713210:exon | 30.0% | |
| !! | TTTGCTTTGAGATGAAACAA+AGG | - | chr5_1:5320100-5320119 | None:intergenic | 30.0% |
| CAGTTAAGGAAAACAAGAAA+TGG | + | chr5_1:5320167-5320186 | Msa0713210:CDS | 30.0% | |
| ATGGTCCTATGAAGTATAAT+TGG | + | chr5_1:5320395-5320414 | Msa0713210:CDS | 30.0% | |
| TGGTCCTATGAAGTATAATT+GGG | + | chr5_1:5320396-5320415 | Msa0713210:CDS | 30.0% | |
| ! | GTTATGTCTTTTCATCAATG+TGG | + | chr5_1:5320475-5320494 | Msa0713210:CDS | 30.0% |
| ACACTAAATAGAGCCTAAAT+TGG | - | chr5_1:5320566-5320585 | None:intergenic | 30.0% | |
| TGGTTTACACAGACAAATTA+GGG | + | chr5_1:5320769-5320788 | Msa0713210:CDS | 30.0% | |
| ! | ATTTTCAACGAATCAATGTG+TGG | - | chr5_1:5321054-5321073 | None:intergenic | 30.0% |
| ATATTAAGGATAGTTGCAAG+AGG | + | chr5_1:5321162-5321181 | Msa0713210:intron | 30.0% | |
| !! | TTGCAAGAGGAATACTTTTT+AGG | + | chr5_1:5321175-5321194 | Msa0713210:intron | 30.0% |
| !! | TGCAAGAGGAATACTTTTTA+GGG | + | chr5_1:5321176-5321195 | Msa0713210:intron | 30.0% |
| GAATTTCCTGCAAATGAATT+TGG | - | chr5_1:5321269-5321288 | None:intergenic | 30.0% | |
| ATTAAGACCAAATTGTTTGC+AGG | + | chr5_1:5321507-5321526 | Msa0713210:intron | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | - | chr5_1:5321517-5321536 | None:intergenic | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | + | chr5_1:5321783-5321802 | Msa0713210:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | + | chr5_1:5321867-5321886 | Msa0713210:CDS | 30.0% | |
| !! | AGGATACTGGATTTTTCAAA+AGG | + | chr5_1:5321887-5321906 | Msa0713210:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | + | chr5_1:5321888-5321907 | Msa0713210:CDS | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | - | chr5_1:5322004-5322023 | None:intergenic | 30.0% |
| ! | AAAAGCATATTCCAAACAAG+TGG | + | chr5_1:5322003-5322022 | Msa0713210:CDS | 30.0% |
| AAACTTTCAGCAAAAATAGC+TGG | + | chr5_1:5322030-5322049 | Msa0713210:CDS | 30.0% | |
| CAAAAATAGCTGGAATTCAT+TGG | + | chr5_1:5322040-5322059 | Msa0713210:CDS | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | + | chr5_1:5322108-5322127 | Msa0713210:CDS | 30.0% | |
| ATTGGTTAATCAAGTGAAGA+TGG | + | chr5_1:5322242-5322261 | Msa0713210:CDS | 30.0% | |
| !! | AATCAGATTTTGAAAGCCTT+TGG | - | chr5_1:5322462-5322481 | None:intergenic | 30.0% |
| CTTTATGTTGGACACATTAA+AGG | + | chr5_1:5322496-5322515 | Msa0713210:three_prime_UTR | 30.0% | |
| GTACTTCACAAACAATTACA+AGG | + | chr5_1:5322608-5322627 | Msa0713210:three_prime_UTR | 30.0% | |
| TTTCGGACAAGAAACTTTGT+TGG | - | chr5_1:5320071-5320090 | None:intergenic | 35.0% | |
| GCAAGAAACACATTTCACAA+AGG | + | chr5_1:5320129-5320148 | Msa0713210:CDS | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | + | chr5_1:5320309-5320328 | Msa0713210:CDS | 35.0% |
| GCTTCCCAATTATACTTCAT+AGG | - | chr5_1:5320403-5320422 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | + | chr5_1:5320436-5320455 | Msa0713210:CDS | 35.0% | |
| ! | ATGTCTTTTCATCAATGTGG+TGG | + | chr5_1:5320478-5320497 | Msa0713210:CDS | 35.0% |
| CTAAATAGAGCCTAAATTGG+TGG | - | chr5_1:5320563-5320582 | None:intergenic | 35.0% | |
| CTGGTTTACACAGACAAATT+AGG | + | chr5_1:5320768-5320787 | Msa0713210:CDS | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | + | chr5_1:5320772-5320791 | Msa0713210:CDS | 35.0% | |
| CATAGTAAGTTTCACCAACT+TGG | + | chr5_1:5320926-5320945 | Msa0713210:intron | 35.0% | |
| !! | ACCAACTTGGTCTTCAATTT+TGG | + | chr5_1:5320939-5320958 | Msa0713210:intron | 35.0% |
| !! | CCAACTTGGTCTTCAATTTT+GGG | + | chr5_1:5320940-5320959 | Msa0713210:intron | 35.0% |
| !! | CAACTTGGTCTTCAATTTTG+GGG | + | chr5_1:5320941-5320960 | Msa0713210:intron | 35.0% |
| !!! | TCTTCAATTTTGGGGTTACT+TGG | + | chr5_1:5320949-5320968 | Msa0713210:intron | 35.0% |
| ACTAAGACTTGATGCACATT+TGG | + | chr5_1:5321219-5321238 | Msa0713210:intron | 35.0% | |
| TCATTTGCAGGAAATTCAAG+TGG | + | chr5_1:5321272-5321291 | Msa0713210:intron | 35.0% | |
| CATTTGCAGGAAATTCAAGT+GGG | + | chr5_1:5321273-5321292 | Msa0713210:intron | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | + | chr5_1:5321371-5321390 | Msa0713210:CDS | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | - | chr5_1:5321380-5321399 | None:intergenic | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | + | chr5_1:5321519-5321538 | Msa0713210:intron | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | + | chr5_1:5321520-5321539 | Msa0713210:intron | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | + | chr5_1:5321371-5321390 | Msa0713210:CDS | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | - | chr5_1:5321380-5321399 | None:intergenic | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | + | chr5_1:5321874-5321893 | Msa0713210:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | - | chr5_1:5321886-5321905 | None:intergenic | 35.0% | |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | + | chr5_1:5321892-5321911 | Msa0713210:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | + | chr5_1:5321899-5321918 | Msa0713210:CDS | 35.0% |
| ATGGAGATTTCTTCCTTGAA+TGG | + | chr5_1:5321932-5321951 | Msa0713210:CDS | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | + | chr5_1:5321958-5321977 | Msa0713210:CDS | 35.0% |
| AAAGTTTCACTCCACTTGTT+TGG | - | chr5_1:5322017-5322036 | None:intergenic | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | - | chr5_1:5322141-5322160 | None:intergenic | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | + | chr5_1:5322179-5322198 | Msa0713210:CDS | 35.0% | |
| GGTGAACAATTAGCATGATT+AGG | - | chr5_1:5322216-5322235 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | + | chr5_1:5322224-5322243 | Msa0713210:CDS | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | - | chr5_1:5322237-5322256 | None:intergenic | 35.0% | |
| AATAAACAAGAGGTTGCTTG+AGG | + | chr5_1:5322380-5322399 | Msa0713210:CDS | 35.0% | |
| ATAAACAAGAGGTTGCTTGA+GGG | + | chr5_1:5322381-5322400 | Msa0713210:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | + | chr5_1:5322404-5322423 | Msa0713210:CDS | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | + | chr5_1:5322429-5322448 | Msa0713210:CDS | 35.0% |
| TATGGGACTGATCTTTATGT+TGG | + | chr5_1:5322484-5322503 | Msa0713210:three_prime_UTR | 35.0% | |
| TGGACACATTAAAGGAATCA+AGG | + | chr5_1:5322504-5322523 | Msa0713210:three_prime_UTR | 35.0% | |
| AAACACCAACTCTGCAGTTA+AGG | + | chr5_1:5320153-5320172 | Msa0713210:CDS | 40.0% | |
| ! | GTTTTCCTTAACTGCAGAGT+TGG | - | chr5_1:5320161-5320180 | None:intergenic | 40.0% |
| TCGTGGTTATGAACAATCGA+TGG | - | chr5_1:5320208-5320227 | None:intergenic | 40.0% | |
| !! | TGCTGACTCAAATAGAGTAC+CGG | + | chr5_1:5320228-5320247 | Msa0713210:CDS | 40.0% |
| AATGGCAACATCACAAACAC+CGG | - | chr5_1:5320250-5320269 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | + | chr5_1:5320255-5320274 | Msa0713210:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | + | chr5_1:5320265-5320284 | Msa0713210:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | + | chr5_1:5320353-5320372 | Msa0713210:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | + | chr5_1:5320357-5320376 | Msa0713210:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | + | chr5_1:5320376-5320395 | Msa0713210:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | + | chr5_1:5320423-5320442 | Msa0713210:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | + | chr5_1:5320487-5320506 | Msa0713210:CDS | 40.0% |
| TAGCATACCTTTACCTCCAT+GGG | + | chr5_1:5320716-5320735 | Msa0713210:intron | 40.0% | |
| ! | CTTATTTCTTCAAGCACCCA+TGG | - | chr5_1:5320735-5320754 | None:intergenic | 40.0% |
| CATGGGTGCTTGAAGAAATA+AGG | + | chr5_1:5320733-5320752 | Msa0713210:CDS | 40.0% | |
| AATCCCGAATACATCTCGTT+GGG | + | chr5_1:5320798-5320817 | Msa0713210:CDS | 40.0% | |
| CCCAAAATTGAAGACCAAGT+TGG | - | chr5_1:5320943-5320962 | None:intergenic | 40.0% | |
| CCATCAGTTTCATGGTAAGA+TGG | - | chr5_1:5321327-5321346 | None:intergenic | 40.0% | |
| CCATCTTACCATGAAACTGA+TGG | + | chr5_1:5321324-5321343 | Msa0713210:CDS | 40.0% | |
| ACCATGAAACTGATGGAACT+TGG | + | chr5_1:5321331-5321350 | Msa0713210:CDS | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+TGG | - | chr5_1:5321335-5321354 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | + | chr5_1:5321348-5321367 | Msa0713210:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | - | chr5_1:5321363-5321382 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | - | chr5_1:5321335-5321354 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | - | chr5_1:5321336-5321355 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | + | chr5_1:5321348-5321367 | Msa0713210:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | - | chr5_1:5321363-5321382 | None:intergenic | 40.0% | |
| AGCAATTGGGAAGAAAGAGT+GGG | + | chr5_1:5321819-5321838 | Msa0713210:CDS | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+TGG | - | chr5_1:5321856-5321875 | None:intergenic | 40.0% |
| GGAACATGGAACACAGAATA+TGG | + | chr5_1:5321913-5321932 | Msa0713210:CDS | 40.0% | |
| GTTTGCTTGAGTACCATTCA+AGG | - | chr5_1:5321948-5321967 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+TGG | + | chr5_1:5322081-5322100 | Msa0713210:CDS | 40.0% | |
| ! | CTGCTGGTTACTATAACACA+AGG | + | chr5_1:5322097-5322116 | Msa0713210:CDS | 40.0% |
| GCACAAATGCTAGCAAAACA+TGG | + | chr5_1:5322144-5322163 | Msa0713210:CDS | 40.0% | |
| CATGCTAATTGTTCACCAGA+AGG | + | chr5_1:5322219-5322238 | Msa0713210:CDS | 40.0% | |
| AAGATGGCAACAAAGATTGC+AGG | + | chr5_1:5322258-5322277 | Msa0713210:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | + | chr5_1:5322333-5322352 | Msa0713210:CDS | 40.0% |
| CTCTATTTGAGTCAGCATCG+TGG | - | chr5_1:5320225-5320244 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | + | chr5_1:5320264-5320283 | Msa0713210:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | - | chr5_1:5320268-5320287 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | + | chr5_1:5320268-5320287 | Msa0713210:CDS | 45.0% | |
| ! | TTGATGGCATTGAAGAGTGC+TGG | + | chr5_1:5320325-5320344 | Msa0713210:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | + | chr5_1:5320334-5320353 | Msa0713210:CDS | 45.0% |
| TGCTGGAGTTGAAGGAGTAA+TGG | + | chr5_1:5320342-5320361 | Msa0713210:CDS | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | + | chr5_1:5320356-5320375 | Msa0713210:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | + | chr5_1:5320358-5320377 | Msa0713210:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | + | chr5_1:5320500-5320519 | Msa0713210:CDS | 45.0% |
| CTAGCATACCTTTACCTCCA+TGG | + | chr5_1:5320715-5320734 | Msa0713210:intron | 45.0% | |
| ATTTCTTCAAGCACCCATGG+AGG | - | chr5_1:5320732-5320751 | None:intergenic | 45.0% | |
| AATAAGGAAGAACCCTGAGC+TGG | + | chr5_1:5320749-5320768 | Msa0713210:CDS | 45.0% | |
| TGTCTGTGTAAACCAGCTCA+GGG | - | chr5_1:5320764-5320783 | None:intergenic | 45.0% | |
| TTGTCTGTGTAAACCAGCTC+AGG | - | chr5_1:5320765-5320784 | None:intergenic | 45.0% | |
| ACACAGACAAATTAGGGAGG+AGG | + | chr5_1:5320775-5320794 | Msa0713210:CDS | 45.0% | |
| GAATCCCGAATACATCTCGT+TGG | + | chr5_1:5320797-5320816 | Msa0713210:CDS | 45.0% | |
| ACAGCCCAACGAGATGTATT+CGG | - | chr5_1:5320805-5320824 | None:intergenic | 45.0% | |
| TAATCGGAGTAGACCTGAAG+AGG | - | chr5_1:5320858-5320877 | None:intergenic | 45.0% | |
| GTCTACTCCGATTACATGAG+AGG | + | chr5_1:5320864-5320883 | Msa0713210:CDS | 45.0% | |
| ACGGAAGCCTCTCATGTAAT+CGG | - | chr5_1:5320874-5320893 | None:intergenic | 45.0% | |
| CAGGAAATTCAAGTGGGACT+TGG | + | chr5_1:5321279-5321298 | Msa0713210:intron | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | + | chr5_1:5321342-5321361 | Msa0713210:CDS | 45.0% | |
| CAGGAAATTCAAGTGGGACT+TGG | + | chr5_1:5321279-5321298 | Msa0713210:intron | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | - | chr5_1:5321574-5321593 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | + | chr5_1:5321571-5321590 | Msa0713210:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | + | chr5_1:5321578-5321597 | Msa0713210:CDS | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | + | chr5_1:5321342-5321361 | Msa0713210:CDS | 45.0% | |
| AAGCATCAGCTGCAGCAATT+GGG | + | chr5_1:5321806-5321825 | Msa0713210:CDS | 45.0% | |
| CAGCAATTGGGAAGAAAGAG+TGG | + | chr5_1:5321818-5321837 | Msa0713210:CDS | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | + | chr5_1:5321820-5321839 | Msa0713210:CDS | 45.0% | |
| AAGAAAGAGTGGGGAACAAG+TGG | + | chr5_1:5321829-5321848 | Msa0713210:CDS | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | + | chr5_1:5322261-5322280 | Msa0713210:CDS | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCTT+TGG | + | chr5_1:5322287-5322306 | Msa0713210:CDS | 45.0% |
| GGTTGCTTGAGGGTGAAAAT+TGG | + | chr5_1:5322391-5322410 | Msa0713210:CDS | 45.0% | |
| TGCTTGAGGGTGAAAATTGG+AGG | + | chr5_1:5322394-5322413 | Msa0713210:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | + | chr5_1:5322432-5322451 | Msa0713210:CDS | 45.0% | |
| !! | GTCTGATGGTGGTAAACCAA+AGG | + | chr5_1:5322443-5322462 | Msa0713210:CDS | 45.0% |
| !! | GTTGGTGACTCTTGCAGGTA+TGG | + | chr5_1:5320505-5320524 | Msa0713210:intron | 50.0% |
| TCAAGCACCCATGGAGGTAA+AGG | - | chr5_1:5320726-5320745 | None:intergenic | 50.0% | |
| CAGCCCAACGAGATGTATTC+GGG | - | chr5_1:5320804-5320823 | None:intergenic | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+TGG | + | chr5_1:5320825-5320844 | Msa0713210:CDS | 50.0% | |
| GGAGTTCTTCCAGCTAGAAC+AGG | - | chr5_1:5320837-5320856 | None:intergenic | 50.0% | |
| AGCTGGAAGAACTCCTCTTC+AGG | + | chr5_1:5320842-5320861 | Msa0713210:CDS | 50.0% | |
| ! | AAGTGGGACTTGGTCCATGT+GGG | + | chr5_1:5321289-5321308 | Msa0713210:CDS | 50.0% |
| GGATATCTCAACTCCCCACA+TGG | - | chr5_1:5321306-5321325 | None:intergenic | 50.0% | |
| ! | AAGTGGGACTTGGTCCATGT+GGG | + | chr5_1:5321289-5321308 | Msa0713210:CDS | 50.0% |
| GGATATCTCAACTCCCCACA+TGG | - | chr5_1:5321306-5321325 | None:intergenic | 50.0% | |
| ! | GAAGCATCAGCTGCAGCAAT+TGG | + | chr5_1:5321805-5321824 | Msa0713210:CDS | 50.0% |
| ACAAGTGGACCACATGACTC+AGG | + | chr5_1:5321844-5321863 | Msa0713210:CDS | 50.0% | |
| ATTGCAGGTGGTGAACTTGC+TGG | + | chr5_1:5322273-5322292 | Msa0713210:CDS | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | + | chr5_1:5320363-5320382 | Msa0713210:CDS | 55.0% |
| ! | CAAGTGGGACTTGGTCCATG+TGG | + | chr5_1:5321288-5321307 | Msa0713210:CDS | 55.0% |
| ! | AGTGGGACTTGGTCCATGTG+GGG | + | chr5_1:5321290-5321309 | Msa0713210:CDS | 55.0% |
| ! | CAAGTGGGACTTGGTCCATG+TGG | + | chr5_1:5321288-5321307 | Msa0713210:CDS | 55.0% |
| ! | AGTGGGACTTGGTCCATGTG+GGG | + | chr5_1:5321290-5321309 | Msa0713210:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5319958 | 5322652 | 5319958 | ID=Msa0713210;Name=Msa0713210 |
| chr5_1 | mRNA | 5319958 | 5322652 | 5319958 | ID=Msa0713210-mRNA-1;Parent=Msa0713210;Name=Msa0713210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=28|0.5|0.8|1|1|1|5|173|553 |
| chr5_1 | exon | 5319958 | 5320521 | 5319958 | ID=Msa0713210-mRNA-1:exon:2330;Parent=Msa0713210-mRNA-1 |
| chr5_1 | exon | 5320719 | 5320929 | 5320719 | ID=Msa0713210-mRNA-1:exon:2331;Parent=Msa0713210-mRNA-1 |
| chr5_1 | exon | 5321282 | 5321392 | 5321282 | ID=Msa0713210-mRNA-1:exon:2332;Parent=Msa0713210-mRNA-1 |
| chr5_1 | exon | 5321529 | 5321639 | 5321529 | ID=Msa0713210-mRNA-1:exon:2333;Parent=Msa0713210-mRNA-1 |
| chr5_1 | exon | 5321787 | 5322652 | 5321787 | ID=Msa0713210-mRNA-1:exon:2334;Parent=Msa0713210-mRNA-1 |
| chr5_1 | five_prime_UTR | 5319958 | 5319985 | 5319958 | ID=Msa0713210-mRNA-1:five_prime_utr;Parent=Msa0713210-mRNA-1 |
| chr5_1 | CDS | 5319986 | 5320521 | 5319986 | ID=Msa0713210-mRNA-1:cds;Parent=Msa0713210-mRNA-1 |
| chr5_1 | CDS | 5320719 | 5320929 | 5320719 | ID=Msa0713210-mRNA-1:cds;Parent=Msa0713210-mRNA-1 |
| chr5_1 | CDS | 5321282 | 5321392 | 5321282 | ID=Msa0713210-mRNA-1:cds;Parent=Msa0713210-mRNA-1 |
| chr5_1 | CDS | 5321529 | 5321639 | 5321529 | ID=Msa0713210-mRNA-1:cds;Parent=Msa0713210-mRNA-1 |
| chr5_1 | CDS | 5321787 | 5322479 | 5321787 | ID=Msa0713210-mRNA-1:cds;Parent=Msa0713210-mRNA-1 |
| chr5_1 | three_prime_UTR | 5322480 | 5322652 | 5322480 | ID=Msa0713210-mRNA-1:three_prime_utr;Parent=Msa0713210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
