Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834460 | XP_003611409.1 | 97.422 | 543 | 14 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834460 | sp|O23553|BAM3_ARATH | 70.471 | 552 | 150 | 7 | 1 | 543 | 1 | 548 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834460 | G7JYN3 | 97.422 | 543 | 14 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0834460 | 0.810871 | 9.292236e-51 | -8.615850e-47 |
| Msa0014410 | Msa0834460 | 0.820887 | 5.407933e-53 | -8.615850e-47 |
| Msa0020630 | Msa0834460 | 0.801659 | 8.112597e-49 | -8.615850e-47 |
| Msa0038310 | Msa0834460 | 0.820659 | 6.103396e-53 | -8.615850e-47 |
| Msa0044710 | Msa0834460 | 0.809434 | 1.895887e-50 | -8.615850e-47 |
| Msa0055280 | Msa0834460 | 0.802439 | 5.606723e-49 | -8.615850e-47 |
| Msa0064550 | Msa0834460 | 0.815902 | 7.286023e-52 | -8.615850e-47 |
| Msa0068410 | Msa0834460 | 0.835401 | 1.714320e-56 | -8.615850e-47 |
| Msa0096020 | Msa0834460 | 0.813332 | 2.699960e-51 | -8.615850e-47 |
| Msa0101060 | Msa0834460 | 0.805123 | 1.553889e-49 | -8.615850e-47 |
| Msa0109490 | Msa0834460 | 0.819696 | 1.014329e-52 | -8.615850e-47 |
| Msa0114250 | Msa0834460 | 0.802902 | 4.500648e-49 | -8.615850e-47 |
| Msa0610770 | Msa0834460 | 0.841848 | 3.704582e-58 | -8.615850e-47 |
| Msa0620640 | Msa0834460 | 0.802074 | 6.665980e-49 | -8.615850e-47 |
| Msa0621780 | Msa0834460 | 0.819295 | 1.251725e-52 | -8.615850e-47 |
| Msa0622910 | Msa0834460 | -0.810758 | 9.832086e-51 | -8.615850e-47 |
| Msa0628100 | Msa0834460 | 0.828311 | 9.649357e-55 | -8.615850e-47 |
| Msa0650640 | Msa0834460 | 0.801600 | 8.339945e-49 | -8.615850e-47 |
| Msa0650650 | Msa0834460 | 0.863707 | 2.054422e-64 | -8.615850e-47 |
| Msa0650730 | Msa0834460 | 0.835636 | 1.495080e-56 | -8.615850e-47 |
| Msa0650740 | Msa0834460 | 0.866851 | 2.106623e-65 | -8.615850e-47 |
| Msa0651320 | Msa0834460 | 0.838352 | 3.027242e-57 | -8.615850e-47 |
| Msa0665790 | Msa0834460 | 0.802652 | 5.067476e-49 | -8.615850e-47 |
| Msa0676100 | Msa0834460 | 0.810754 | 9.850589e-51 | -8.615850e-47 |
| Msa0693490 | Msa0834460 | 0.848655 | 5.338028e-60 | -8.615850e-47 |
| Msa0713210 | Msa0834460 | 0.896241 | 4.457619e-76 | -8.615850e-47 |
| Msa0713220 | Msa0834460 | 0.892989 | 9.536777e-75 | -8.615850e-47 |
| Msa0713230 | Msa0834460 | 0.866577 | 2.576419e-65 | -8.615850e-47 |
| Msa0726610 | Msa0834460 | 0.801873 | 7.333278e-49 | -8.615850e-47 |
| Msa0731710 | Msa0834460 | 0.805272 | 1.445955e-49 | -8.615850e-47 |
| Msa0754350 | Msa0834460 | 0.862098 | 6.446511e-64 | -8.615850e-47 |
| Msa0755080 | Msa0834460 | 0.915177 | 8.020331e-85 | -8.615850e-47 |
| Msa0755090 | Msa0834460 | 0.978545 | 4.740747e-146 | -8.615850e-47 |
| Msa0782490 | Msa0834460 | 0.801776 | 7.675769e-49 | -8.615850e-47 |
| Msa0787720 | Msa0834460 | 0.806373 | 8.491231e-50 | -8.615850e-47 |
| Msa0787730 | Msa0834460 | 0.803623 | 3.191099e-49 | -8.615850e-47 |
| Msa0789270 | Msa0834460 | 0.806506 | 7.957206e-50 | -8.615850e-47 |
| Msa0789280 | Msa0834460 | 0.804265 | 2.346628e-49 | -8.615850e-47 |
| Msa0789290 | Msa0834460 | 0.804894 | 1.734717e-49 | -8.615850e-47 |
| Msa0789300 | Msa0834460 | 0.805307 | 1.422029e-49 | -8.615850e-47 |
| Msa0795710 | Msa0834460 | 0.821148 | 4.709403e-53 | -8.615850e-47 |
| Msa0796950 | Msa0834460 | 0.854560 | 1.134663e-61 | -8.615850e-47 |
| Msa0797000 | Msa0834460 | 0.886102 | 4.580958e-72 | -8.615850e-47 |
| Msa0822370 | Msa0834460 | 0.802906 | 4.490710e-49 | -8.615850e-47 |
| Msa0828570 | Msa0834460 | 0.829161 | 6.009182e-55 | -8.615850e-47 |
| Msa0833450 | Msa0834460 | 0.810571 | 1.078842e-50 | -8.615850e-47 |
| Msa0834450 | Msa0834460 | 0.930700 | 1.118096e-93 | -8.615850e-47 |
| Msa0834460 | Msa0834600 | 0.868159 | 8.028787e-66 | -8.615850e-47 |
| Msa0834460 | Msa0887070 | 0.817156 | 3.817048e-52 | -8.615850e-47 |
| Msa0834460 | Msa0899700 | 0.806417 | 8.309183e-50 | -8.615850e-47 |
| Msa0834460 | Msa0950410 | 0.831961 | 1.240170e-55 | -8.615850e-47 |
| Msa0834460 | Msa0950620 | 0.842714 | 2.184540e-58 | -8.615850e-47 |
| Msa0834460 | Msa0964580 | 0.817654 | 2.947877e-52 | -8.615850e-47 |
| Msa0834460 | Msa0964680 | 0.818299 | 2.107126e-52 | -8.615850e-47 |
| Msa0834460 | Msa0971860 | 0.809096 | 2.240264e-50 | -8.615850e-47 |
| Msa0834460 | Msa0984000 | 0.810906 | 9.129538e-51 | -8.615850e-47 |
| Msa0834460 | Msa1012920 | 0.823179 | 1.591827e-53 | -8.615850e-47 |
| Msa0834460 | Msa1016110 | 0.801943 | 7.093462e-49 | -8.615850e-47 |
| Msa0834460 | Msa1037020 | 0.837855 | 4.063239e-57 | -8.615850e-47 |
| Msa0834460 | Msa1055360 | 0.808821 | 2.565782e-50 | -8.615850e-47 |
| Msa0834460 | Msa1075590 | 0.822633 | 2.133568e-53 | -8.615850e-47 |
| Msa0834460 | Msa1076520 | 0.817174 | 3.781905e-52 | -8.615850e-47 |
| Msa0834460 | Msa1105270 | 0.820030 | 8.506818e-53 | -8.615850e-47 |
| Msa0834460 | Msa1120620 | 0.813155 | 2.952948e-51 | -8.615850e-47 |
| Msa0834460 | Msa1134560 | 0.835138 | 1.997780e-56 | -8.615850e-47 |
| Msa0834460 | Msa1134690 | 0.809258 | 2.068135e-50 | -8.615850e-47 |
| Msa0834460 | Msa1137090 | 0.810419 | 1.163531e-50 | -8.615850e-47 |
| Msa0834460 | Msa1148750 | 0.812359 | 4.411546e-51 | -8.615850e-47 |
| Msa0834460 | Msa1157020 | 0.824857 | 6.431132e-54 | -8.615850e-47 |
| Msa0834460 | Msa1162980 | 0.836272 | 1.031316e-56 | -8.615850e-47 |
| Msa0834460 | Msa1164530 | 0.839711 | 1.345443e-57 | -8.615850e-47 |
| Msa0834460 | Msa1174870 | 0.810940 | 8.977929e-51 | -8.615850e-47 |
| Msa0834460 | Msa1177620 | 0.809035 | 2.308320e-50 | -8.615850e-47 |
| Msa0834460 | Msa1182830 | 0.829514 | 4.934319e-55 | -8.615850e-47 |
| Msa0834460 | Msa1200960 | 0.803770 | 2.974246e-49 | -8.615850e-47 |
| Msa0834460 | Msa1206760 | 0.813004 | 3.187739e-51 | -8.615850e-47 |
| Msa0834460 | Msa1206830 | 0.803629 | 3.182801e-49 | -8.615850e-47 |
| Msa0834460 | Msa1209020 | 0.815628 | 8.386275e-52 | -8.615850e-47 |
| Msa0834460 | Msa1211390 | 0.835352 | 1.763747e-56 | -8.615850e-47 |
| Msa0834460 | Msa1219780 | -0.812341 | 4.450449e-51 | -8.615850e-47 |
| Msa0834460 | Msa1222030 | -0.812552 | 4.004049e-51 | -8.615850e-47 |
| Msa0834460 | Msa1234730 | 0.804969 | 1.673298e-49 | -8.615850e-47 |
| Msa0834460 | Msa1237260 | 0.816667 | 4.913222e-52 | -8.615850e-47 |
| Msa0834460 | Msa1241820 | 0.846996 | 1.529253e-59 | -8.615850e-47 |
| Msa0834460 | Msa1248220 | 0.810849 | 9.391932e-51 | -8.615850e-47 |
| Msa0834460 | Msa1253970 | 0.802780 | 4.768573e-49 | -8.615850e-47 |
| Msa0834460 | Msa1272480 | 0.802553 | 5.311795e-49 | -8.615850e-47 |
| Msa0834460 | Msa1272950 | 0.852234 | 5.278525e-61 | -8.615850e-47 |
| Msa0834460 | Msa1282210 | 0.806431 | 8.255408e-50 | -8.615850e-47 |
| Msa0834460 | Msa1282920 | 0.821843 | 3.254173e-53 | -8.615850e-47 |
| Msa0834460 | Msa1287360 | 0.816671 | 4.904653e-52 | -8.615850e-47 |
| Msa0834460 | Msa1306190 | 0.846426 | 2.187850e-59 | -8.615850e-47 |
| Msa0834460 | Msa1306200 | 0.845714 | 3.417939e-59 | -8.615850e-47 |
| Msa0834460 | Msa1315110 | 0.800239 | 1.582043e-48 | -8.615850e-47 |
| Msa0834460 | Msa1317710 | 0.803933 | 2.751764e-49 | -8.615850e-47 |
| Msa0834460 | Msa1326400 | 0.844868 | 5.790879e-59 | -8.615850e-47 |
| Msa0834460 | Msa1349810 | 0.818993 | 1.466689e-52 | -8.615850e-47 |
| Msa0834460 | Msa1353670 | 0.852954 | 3.288915e-61 | -8.615850e-47 |
| Msa0834460 | Msa1353680 | 0.810022 | 1.417346e-50 | -8.615850e-47 |
| Msa0834460 | Msa1354090 | 0.834066 | 3.716152e-56 | -8.615850e-47 |
| Msa0834460 | Msa1356180 | 0.880069 | 7.435332e-70 | -8.615850e-47 |
| Msa0834460 | Msa1361190 | 0.809594 | 1.751492e-50 | -8.615850e-47 |
| Msa0834460 | Msa1368980 | 0.831003 | 2.134632e-55 | -8.615850e-47 |
| Msa0834460 | Msa1370930 | -0.817634 | 2.978148e-52 | -8.615850e-47 |
| Msa0834460 | Msa1378460 | 0.810774 | 9.751383e-51 | -8.615850e-47 |
| Msa0834460 | Msa1378470 | 0.827804 | 1.277943e-54 | -8.615850e-47 |
| Msa0834460 | Msa1383480 | 0.836591 | 8.557266e-57 | -8.615850e-47 |
| Msa0834460 | Msa1395750 | 0.806193 | 9.264938e-50 | -8.615850e-47 |
| Msa0834460 | Msa1397970 | 0.822353 | 2.478645e-53 | -8.615850e-47 |
| Msa0834460 | Msa1403950 | 0.817622 | 2.997543e-52 | -8.615850e-47 |
| Msa0834460 | Msa1407210 | -0.805652 | 1.203902e-49 | -8.615850e-47 |
| Msa0834460 | Msa1427830 | 0.821798 | 3.334455e-53 | -8.615850e-47 |
| Msa0834460 | Msa1434660 | 0.817218 | 3.695805e-52 | -8.615850e-47 |
| Msa0834460 | Msa1450020 | 0.804229 | 2.387627e-49 | -8.615850e-47 |
| Msa0834460 | Msa1450980 | 0.810458 | 1.141067e-50 | -8.615850e-47 |
| Msa0834460 | Msa1454110 | 0.832099 | 1.146728e-55 | -8.615850e-47 |
| Msa0154240 | Msa0834460 | 0.822168 | 2.736850e-53 | -8.615850e-47 |
| Msa0154270 | Msa0834460 | 0.811321 | 7.422713e-51 | -8.615850e-47 |
| Msa0155610 | Msa0834460 | 0.817177 | 3.774227e-52 | -8.615850e-47 |
| Msa0159750 | Msa0834460 | 0.802019 | 6.841651e-49 | -8.615850e-47 |
| Msa0197180 | Msa0834460 | 0.816822 | 4.535285e-52 | -8.615850e-47 |
| Msa0198440 | Msa0834460 | 0.830828 | 2.357354e-55 | -8.615850e-47 |
| Msa0223100 | Msa0834460 | 0.856362 | 3.387120e-62 | -8.615850e-47 |
| Msa0223290 | Msa0834460 | 0.853941 | 1.712556e-61 | -8.615850e-47 |
| Msa0223380 | Msa0834460 | 0.851284 | 9.811655e-61 | -8.615850e-47 |
| Msa0368780 | Msa0834460 | 0.810359 | 1.198807e-50 | -8.615850e-47 |
| Msa0377280 | Msa0834460 | 0.822182 | 2.715556e-53 | -8.615850e-47 |
| Msa0379540 | Msa0834460 | 0.818892 | 1.545926e-52 | -8.615850e-47 |
| Msa0381410 | Msa0834460 | 0.807022 | 6.192376e-50 | -8.615850e-47 |
| Msa0389060 | Msa0834460 | 0.827552 | 1.469165e-54 | -8.615850e-47 |
| Msa0401340 | Msa0834460 | 0.832773 | 7.806679e-56 | -8.615850e-47 |
| Msa0404220 | Msa0834460 | 0.812451 | 4.211968e-51 | -8.615850e-47 |
| Msa0404690 | Msa0834460 | 0.817680 | 2.908099e-52 | -8.615850e-47 |
| Msa0414070 | Msa0834460 | 0.816752 | 4.703134e-52 | -8.615850e-47 |
| Msa0416320 | Msa0834460 | 0.835167 | 1.964381e-56 | -8.615850e-47 |
| Msa0419620 | Msa0834460 | -0.810717 | 1.003363e-50 | -8.615850e-47 |
| Msa0419990 | Msa0834460 | 0.801188 | 1.012989e-48 | -8.615850e-47 |
| Msa0431520 | Msa0834460 | 0.818412 | 1.987213e-52 | -8.615850e-47 |
| Msa0431830 | Msa0834460 | 0.834043 | 3.765737e-56 | -8.615850e-47 |
| Msa0448080 | Msa0834460 | 0.814972 | 1.173068e-51 | -8.615850e-47 |
| Msa0448120 | Msa0834460 | 0.864205 | 1.437317e-64 | -8.615850e-47 |
| Msa0462590 | Msa0834460 | 0.829861 | 4.060702e-55 | -8.615850e-47 |
| Msa0238940 | Msa0834460 | 0.801082 | 1.064815e-48 | -8.615850e-47 |
| Msa0240780 | Msa0834460 | 0.808686 | 2.741976e-50 | -8.615850e-47 |
| Msa0252180 | Msa0834460 | 0.802563 | 5.286433e-49 | -8.615850e-47 |
| Msa0260190 | Msa0834460 | 0.811776 | 5.911858e-51 | -8.615850e-47 |
| Msa0265210 | Msa0834460 | 0.814103 | 1.826486e-51 | -8.615850e-47 |
| Msa0278670 | Msa0834460 | 0.828819 | 7.274177e-55 | -8.615850e-47 |
| Msa0282170 | Msa0834460 | 0.813905 | 2.020046e-51 | -8.615850e-47 |
| Msa0288240 | Msa0834460 | 0.812016 | 5.242168e-51 | -8.615850e-47 |
| Msa0302650 | Msa0834460 | 0.831217 | 1.891646e-55 | -8.615850e-47 |
| Msa0308770 | Msa0834460 | 0.816783 | 4.629320e-52 | -8.615850e-47 |
| Msa0316750 | Msa0834460 | 0.817920 | 2.567905e-52 | -8.615850e-47 |
| Msa0318070 | Msa0834460 | 0.836377 | 9.700332e-57 | -8.615850e-47 |
| Msa0318230 | Msa0834460 | 0.800972 | 1.121364e-48 | -8.615850e-47 |
| Msa0326670 | Msa0834460 | 0.817864 | 2.643817e-52 | -8.615850e-47 |
| Msa0339870 | Msa0834460 | 0.806637 | 7.466756e-50 | -8.615850e-47 |
| Msa0354390 | Msa0834460 | 0.814562 | 1.445960e-51 | -8.615850e-47 |
| Msa0357380 | Msa0834460 | 0.808937 | 2.422695e-50 | -8.615850e-47 |
| Msa0357390 | Msa0834460 | 0.819734 | 9.942430e-53 | -8.615850e-47 |
| Msa0362060 | Msa0834460 | 0.835013 | 2.148217e-56 | -8.615850e-47 |
| Msa0511720 | Msa0834460 | -0.803876 | 2.828261e-49 | -8.615850e-47 |
| Msa0516160 | Msa0834460 | 0.800447 | 1.435303e-48 | -8.615850e-47 |
| Msa0530380 | Msa0834460 | 0.824729 | 6.892103e-54 | -8.615850e-47 |
| Msa0530950 | Msa0834460 | 0.834651 | 2.650282e-56 | -8.615850e-47 |
| Msa0532100 | Msa0834460 | -0.802893 | 4.520256e-49 | -8.615850e-47 |
| Msa0577320 | Msa0834460 | -0.810195 | 1.300699e-50 | -8.615850e-47 |
| Msa0579340 | Msa0834460 | 0.880889 | 3.782078e-70 | -8.615850e-47 |
| Msa0579350 | Msa0834460 | 0.811404 | 7.119886e-51 | -8.615850e-47 |
| Msa0580540 | Msa0834460 | 0.824457 | 7.988758e-54 | -8.615850e-47 |
| Msa0581920 | Msa0834460 | 0.851173 | 1.054703e-60 | -8.615850e-47 |
| Msa0584280 | Msa0834460 | 0.801369 | 9.302598e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834460 | MtrunA17_Chr5g0400001 | 97.422 | 543 | 14 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1108 |
| Msa0834460 | MtrunA17_Chr5g0399991 | 91.743 | 545 | 41 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1047 |
| Msa0834460 | MtrunA17_Chr4g0055281 | 74.182 | 550 | 126 | 4 | 1 | 543 | 1 | 541 | 0.0 | 851 |
| Msa0834460 | MtrunA17_Chr6g0481031 | 63.594 | 434 | 146 | 2 | 87 | 508 | 106 | 539 | 0.0 | 611 |
| Msa0834460 | MtrunA17_Chr4g0023601 | 50.115 | 435 | 200 | 4 | 85 | 505 | 11 | 442 | 6.15e-156 | 454 |
| Msa0834460 | MtrunA17_Chr2g0323051 | 50.229 | 436 | 200 | 4 | 84 | 505 | 83 | 515 | 4.45e-150 | 443 |
| Msa0834460 | MtrunA17_Chr8g0388651 | 46.916 | 454 | 222 | 7 | 72 | 508 | 61 | 512 | 9.33e-140 | 415 |
| Msa0834460 | MtrunA17_Chr7g0247631 | 46.413 | 446 | 222 | 6 | 73 | 505 | 251 | 692 | 5.98e-125 | 382 |
| Msa0834460 | MtrunA17_Chr2g0286431 | 39.421 | 449 | 259 | 5 | 74 | 517 | 70 | 510 | 9.61e-108 | 332 |
| Msa0834460 | MtrunA17_Chr5g0408851 | 37.214 | 481 | 280 | 10 | 42 | 508 | 172 | 644 | 8.43e-103 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834460 | AT4G17090.1 | 70.471 | 552 | 150 | 7 | 1 | 543 | 1 | 548 | 0.0 | 813 |
| Msa0834460 | AT3G23920.1 | 59.592 | 490 | 179 | 4 | 34 | 508 | 56 | 541 | 0.0 | 612 |
| Msa0834460 | AT4G15210.1 | 48.853 | 436 | 205 | 5 | 85 | 505 | 12 | 444 | 9.34e-149 | 436 |
| Msa0834460 | AT4G15210.2 | 52.308 | 390 | 181 | 4 | 85 | 472 | 12 | 398 | 1.35e-146 | 428 |
| Msa0834460 | AT2G32290.1 | 48.506 | 435 | 208 | 5 | 84 | 505 | 75 | 506 | 1.21e-140 | 419 |
| Msa0834460 | AT4G00490.1 | 48.636 | 440 | 209 | 6 | 87 | 513 | 95 | 530 | 2.36e-140 | 417 |
| Msa0834460 | AT4G15210.3 | 49.492 | 394 | 182 | 4 | 126 | 505 | 1 | 391 | 2.88e-138 | 408 |
| Msa0834460 | AT4G15210.4 | 49.492 | 394 | 182 | 4 | 126 | 505 | 1 | 391 | 2.88e-138 | 408 |
| Msa0834460 | AT5G55700.1 | 44.064 | 438 | 228 | 4 | 86 | 506 | 91 | 528 | 3.24e-131 | 393 |
| Msa0834460 | AT2G45880.1 | 44.796 | 442 | 227 | 6 | 74 | 502 | 235 | 672 | 3.35e-122 | 375 |
| Msa0834460 | AT5G45300.2 | 39.593 | 442 | 249 | 8 | 79 | 508 | 245 | 680 | 1.87e-99 | 316 |
| Msa0834460 | AT5G45300.1 | 39.593 | 442 | 249 | 8 | 79 | 508 | 247 | 682 | 1.88e-99 | 316 |
| Msa0834460 | AT5G45300.3 | 39.593 | 442 | 249 | 8 | 79 | 508 | 261 | 696 | 2.96e-99 | 315 |
| Msa0834460 | AT5G55700.2 | 45.566 | 327 | 165 | 3 | 193 | 506 | 39 | 365 | 3.31e-99 | 305 |
| Msa0834460 | AT5G18670.1 | 38.642 | 427 | 244 | 4 | 87 | 506 | 87 | 502 | 1.57e-90 | 288 |
Find 130 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5_4:-7479283 | Msa0834460:CDS |
| AAGAAGTATATTGATTTATT+AGG | 0.162007 | 5_4:-7477819 | Msa0834460:three_prime_UTR |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5_4:+7478386 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_4:+7478846 | None:intergenic |
| CTAGTTTACACAGACAAATT+AGG | 0.217572 | 5_4:-7479408 | Msa0834460:CDS |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5_4:-7477931 | Msa0834460:CDS |
| ATGGTCCTATGAATTATAAT+TGG | 0.239981 | 5_4:-7479767 | Msa0834460:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5_4:-7478643 | Msa0834460:intron |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | 5_4:+7478425 | None:intergenic |
| TGGACACATTAAAGGAATTA+AGG | 0.290030 | 5_4:-7477923 | Msa0834460:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_4:-7478831 | Msa0834460:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_4:-7479799 | Msa0834460:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5_4:-7478513 | Msa0834460:CDS |
| AGAAGTATATTGATTTATTA+GGG | 0.311275 | 5_4:-7477818 | Msa0834460:three_prime_UTR |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_4:-7478552 | Msa0834460:CDS |
| GGTTGCTTGAAGGTGAAAAT+TGG | 0.317020 | 5_4:-7478035 | Msa0834460:CDS |
| CATCCCAATGAGATGTATTC+AGG | 0.331249 | 5_4:+7479375 | None:intergenic |
| CTTGGTGTGCGTAGATAATT+TGG | 0.333865 | 5_4:-7477728 | Msa0834460:three_prime_UTR |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_4:+7478819 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_4:-7478837 | Msa0834460:CDS |
| CACGTATTTCATCATGTTGA+TGG | 0.339637 | 5_4:-7477857 | Msa0834460:three_prime_UTR |
| CTTTCAAAATCTGATTCATA+TGG | 0.346178 | 5_4:-7477961 | Msa0834460:CDS |
| GAAGCATCAGCTGCAGCAAT+TGG | 0.348122 | 5_4:-7478621 | Msa0834460:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5_4:-7478494 | Msa0834460:CDS |
| GTAGAGCAAACACTAAAATA+TGG | 0.350641 | 5_4:-7480195 | Msa0834460:exon |
| CATGGGTGCTTGAAGAAATA+AGG | 0.352882 | 5_4:-7479443 | Msa0834460:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5_4:-7479662 | Msa0834460:intron |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5_4:+7478288 | None:intergenic |
| GGTGAACAATTAGCATGATT+AGG | 0.375380 | 5_4:+7478213 | None:intergenic |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5_4:-7479853 | Msa0834460:CDS |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5_4:-7479282 | Msa0834460:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_4:+7479897 | None:intergenic |
| TAGTTTACACAGACAAATTA+GGG | 0.386153 | 5_4:-7479407 | Msa0834460:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5_4:-7478114 | Msa0834460:CDS |
| TTGTCTGTGTAAACTAGCTC+AGG | 0.393606 | 5_4:+7479414 | None:intergenic |
| CATATCTAAGAATAAATAAG+AGG | 0.406737 | 5_4:-7478056 | Msa0834460:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5_4:-7478386 | Msa0834460:CDS |
| TGAAAATTGGAGGCAATTTG+TGG | 0.420878 | 5_4:-7478022 | Msa0834460:CDS |
| GCTTCCCAATTATAATTCAT+AGG | 0.422256 | 5_4:+7479762 | None:intergenic |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5_4:-7478900 | Msa0834460:CDS |
| TATGGAACTGATCTTTATGT+TGG | 0.435975 | 5_4:-7477943 | Msa0834460:CDS |
| GAATCCTGAATACATCTCAT+TGG | 0.440984 | 5_4:-7479379 | Msa0834460:CDS |
| ACTTGCTGGTGAGAATGCTT+TGG | 0.442476 | 5_4:-7478139 | Msa0834460:CDS |
| AAACACCAACTCTACAGTTA+AGG | 0.445155 | 5_4:-7480009 | Msa0834460:CDS |
| CAGCAATTGGGAAGAAAGAA+TGG | 0.447375 | 5_4:-7478608 | Msa0834460:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5_4:+7479342 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_4:+7478847 | None:intergenic |
| TTGAAGAGTGCTGGTGTTGA+AGG | 0.453491 | 5_4:-7479828 | Msa0834460:CDS |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5_4:-7478247 | Msa0834460:CDS |
| ACGGAAGCTTCTCATGTAAT+CGG | 0.454119 | 5_4:+7479305 | None:intergenic |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5_4:-7478396 | Msa0834460:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5_4:+7478802 | None:intergenic |
| ACTTGATTAACCAATCCTTC+TGG | 0.458432 | 5_4:+7478192 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5_4:-7478168 | Msa0834460:CDS |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_4:+7478855 | None:intergenic |
| CTTATTTCTTCAAGCACCCA+TGG | 0.475790 | 5_4:+7479444 | None:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_4:-7479805 | Msa0834460:CDS |
| AATCCTGAATACATCTCATT+GGG | 0.477122 | 5_4:-7479378 | Msa0834460:CDS |
| ACCACCAACATTATTGAGCT+TGG | 0.478629 | 5_4:-7477746 | Msa0834460:three_prime_UTR |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.481934 | 5_4:-7479837 | Msa0834460:CDS |
| TGGTCCTATGAATTATAATT+GGG | 0.482229 | 5_4:-7479766 | Msa0834460:CDS |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5_4:-7478153 | Msa0834460:CDS |
| ATAAATAAGAGGTTGCTTGA+AGG | 0.486643 | 5_4:-7478045 | Msa0834460:CDS |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5_4:-7478256 | Msa0834460:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_4:-7478848 | Msa0834460:CDS |
| ATTGGTTAATCAAGTGAAGA+TGG | 0.500028 | 5_4:-7478184 | Msa0834460:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5_4:-7478202 | Msa0834460:CDS |
| TCAAGCACCCATGGTGGTAG+AGG | 0.503079 | 5_4:+7479453 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_4:-7479897 | Msa0834460:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | 5_4:-7478423 | Msa0834460:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_4:-7479806 | Msa0834460:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_4:-7479675 | Msa0834460:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_4:-7479739 | Msa0834460:CDS |
| AGCAATTGGGAAGAAAGAAT+GGG | 0.525174 | 5_4:-7478607 | Msa0834460:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_4:-7479804 | Msa0834460:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5_4:-7479351 | Msa0834460:CDS |
| AAGCATCAGCTGCAGCAATT+GGG | 0.535892 | 5_4:-7478620 | Msa0834460:CDS |
| ATTGTATTGACCTGAGTCAT+GGG | 0.537737 | 5_4:+7478572 | None:intergenic |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_4:-7478855 | Msa0834460:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_4:-7479898 | Msa0834460:CDS |
| CAGTTAAGGAAAACAAGAGA+TGG | 0.540014 | 5_4:-7479995 | Msa0834460:CDS |
| TAATCGGAGTAGACTTGAAG+TGG | 0.544728 | 5_4:+7479321 | None:intergenic |
| TGCTTGAAGGTGAAAATTGG+AGG | 0.550977 | 5_4:-7478032 | Msa0834460:CDS |
| CATGCAACTGAATTAACTGC+AGG | 0.552789 | 5_4:-7478345 | Msa0834460:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5_4:+7478481 | None:intergenic |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_4:-7478318 | Msa0834460:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5_4:-7478329 | Msa0834460:CDS |
| TAGCATTCCTCTACCACCAT+GGG | 0.563387 | 5_4:-7479460 | Msa0834460:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_4:-7479809 | Msa0834460:CDS |
| ACACAGACAAATTAGGGAGG+AGG | 0.571216 | 5_4:-7479401 | Msa0834460:CDS |
| GATTGTATTGACCTGAGTCA+TGG | 0.571442 | 5_4:+7478571 | None:intergenic |
| CACACCAAGCTCAATAATGT+TGG | 0.572891 | 5_4:+7477742 | None:intergenic |
| CATGCTAATTGTTCACCAGA+AGG | 0.574244 | 5_4:-7478207 | Msa0834460:CDS |
| ACCAAGCTCAATAATGTTGG+TGG | 0.576937 | 5_4:+7477745 | None:intergenic |
| TGCTGGTGTTGAAGGAGTAA+TGG | 0.577099 | 5_4:-7479820 | Msa0834460:CDS |
| AGTTAAGGAAAACAAGAGAT+GGG | 0.578306 | 5_4:-7479994 | Msa0834460:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5_4:-7478282 | Msa0834460:CDS |
| TTTGCTTTGAGATGAAACAA+AGG | 0.587033 | 5_4:+7480065 | None:intergenic |
| AATAATCTGTAAATCTGTCA+CGG | 0.588821 | 5_4:+7479286 | None:intergenic |
| AAGAAAGAATGGGGAACAAG+TGG | 0.590370 | 5_4:-7478597 | Msa0834460:CDS |
| ATGTTGATGGATCATGTGTA+TGG | 0.592754 | 5_4:-7477844 | Msa0834460:three_prime_UTR |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5_4:-7478907 | Msa0834460:intron |
| ACAAGTGGACCCCATGACTC+AGG | 0.595412 | 5_4:-7478582 | Msa0834460:CDS |
| TGTCTGTGTAAACTAGCTCA+GGG | 0.595938 | 5_4:+7479415 | None:intergenic |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_4:+7478876 | None:intergenic |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5_4:-7479934 | Msa0834460:CDS |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5_4:-7478890 | Msa0834460:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5_4:-7477997 | Msa0834460:CDS |
| GGTGTGCGTAGATAATTTGG+TGG | 0.616254 | 5_4:-7477725 | Msa0834460:three_prime_UTR |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_4:-7478468 | Msa0834460:CDS |
| ATAGCATTCCTCTACCACCA+TGG | 0.632237 | 5_4:-7479461 | Msa0834460:intron |
| GTGTGCGTAGATAATTTGGT+GGG | 0.632548 | 5_4:-7477724 | Msa0834460:three_prime_UTR |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5_4:-7477994 | Msa0834460:CDS |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5_4:-7478906 | Msa0834460:intron |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5_4:-7478891 | Msa0834460:CDS |
| TCGTGGTTATGAGCAATCGA+TGG | 0.660833 | 5_4:+7479957 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_4:+7479915 | None:intergenic |
| TTGTATTGACCTGAGTCATG+GGG | 0.665755 | 5_4:+7478573 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_4:-7479894 | Msa0834460:CDS |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5_4:-7480033 | Msa0834460:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5_4:-7478165 | Msa0834460:CDS |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5_4:+7479940 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5_4:-7478559 | Msa0834460:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_4:-7478808 | Msa0834460:intron |
| GCAATTGGGAAGAAAGAATG+GGG | 0.692825 | 5_4:-7478606 | Msa0834460:CDS |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5_4:-7477984 | Msa0834460:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_4:-7479907 | Msa0834460:CDS |
| TTTACACAGACAAATTAGGG+AGG | 0.705030 | 5_4:-7479404 | Msa0834460:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5_4:-7478889 | Msa0834460:CDS |
| ATTTCTTCAAGCACCCATGG+TGG | 0.717661 | 5_4:+7479447 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTCTTAGATTTTTTATTTT+TGG | + | chr5_4:7478410-7478429 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTAAGACTAATT+TGG | - | chr5_4:7478414-7478433 | Msa0834460:CDS | 15.0% |
| !!! | TTTATAAGATGAATACTTTT+TGG | - | chr5_4:7478917-7478936 | Msa0834460:intron | 15.0% |
| !!! | TTATAAGATGAATACTTTTT+GGG | - | chr5_4:7478918-7478937 | Msa0834460:intron | 15.0% |
| !!! | AAGAAGTATATTGATTTATT+AGG | - | chr5_4:7480094-7480113 | Msa0834460:CDS | 15.0% |
| !!! | AGAAGTATATTGATTTATTA+GGG | - | chr5_4:7480095-7480114 | Msa0834460:CDS | 15.0% |
| !!! | TGAAACAAAGGTTTAATTTT+TGG | + | chr5_4:7477839-7477858 | None:intergenic | 20.0% |
| !! | CATATCTAAGAATAAATAAG+AGG | - | chr5_4:7479857-7479876 | Msa0834460:CDS | 20.0% |
| !!! | TGTTTCTATTTTGTGAATGA+AGG | + | chr5_4:7477768-7477787 | None:intergenic | 25.0% |
| ! | ATGGTCCTATGAATTATAAT+TGG | - | chr5_4:7478146-7478165 | Msa0834460:CDS | 25.0% |
| ! | TGGTCCTATGAATTATAATT+GGG | - | chr5_4:7478147-7478166 | Msa0834460:CDS | 25.0% |
| ! | ATAATATTCAACCACCAATT+TGG | - | chr5_4:7478300-7478319 | Msa0834460:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+GGG | - | chr5_4:7478301-7478320 | Msa0834460:CDS | 25.0% |
| ! | GAATGTAACAACTATTAACT+TGG | + | chr5_4:7478336-7478355 | None:intergenic | 25.0% |
| ! | TAGTTTACACAGACAAATTA+GGG | - | chr5_4:7478506-7478525 | Msa0834460:CDS | 25.0% |
| ! | AATAATCTGTAAATCTGTCA+CGG | + | chr5_4:7478630-7478649 | None:intergenic | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5_4:7478630-7478649 | Msa0834460:CDS | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5_4:7478631-7478650 | Msa0834460:CDS | 25.0% |
| ! | ACAAAATTGAATTATGAGCT+AGG | + | chr5_4:7478893-7478912 | None:intergenic | 25.0% |
| ! | ATGATGATAAAACTAAGACT+TGG | - | chr5_4:7478952-7478971 | Msa0834460:intron | 25.0% |
| !! | GTCTAACATCAATATGATTT+TGG | + | chr5_4:7479173-7479192 | None:intergenic | 25.0% |
| !! | TGTTTGAAAGTAAGTCATTT+TGG | + | chr5_4:7479253-7479272 | None:intergenic | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | chr5_4:7479491-7479510 | None:intergenic | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | chr5_4:7479490-7479509 | Msa0834460:intron | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | chr5_4:7479657-7479676 | Msa0834460:intron | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | chr5_4:7479952-7479971 | Msa0834460:CDS | 25.0% |
| GTAGAGCAAACACTAAAATA+TGG | - | chr5_4:7477718-7477737 | Msa0834460:three_prime_UTR | 30.0% | |
| ! | TTTTGGACAAGAAACTTTGT+TGG | + | chr5_4:7477822-7477841 | None:intergenic | 30.0% |
| !! | TTTGCTTTGAGATGAAACAA+AGG | + | chr5_4:7477851-7477870 | None:intergenic | 30.0% |
| AGTTAAGGAAAACAAGAGAT+GGG | - | chr5_4:7477919-7477938 | Msa0834460:CDS | 30.0% | |
| GCTTCCCAATTATAATTCAT+AGG | + | chr5_4:7478154-7478173 | None:intergenic | 30.0% | |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | chr5_4:7478226-7478245 | Msa0834460:CDS | 30.0% |
| CTAGTTTACACAGACAAATT+AGG | - | chr5_4:7478505-7478524 | Msa0834460:CDS | 30.0% | |
| AATCCTGAATACATCTCATT+GGG | - | chr5_4:7478535-7478554 | Msa0834460:CDS | 30.0% | |
| ! | GTATCTAAGACGTTACAATA+AGG | + | chr5_4:7478824-7478843 | None:intergenic | 30.0% |
| ATTAAGACCAAATTGTTTGC+AGG | - | chr5_4:7478994-7479013 | Msa0834460:intron | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | + | chr5_4:7479004-7479023 | None:intergenic | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5_4:7479270-7479289 | Msa0834460:CDS | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5_4:7479354-7479373 | Msa0834460:CDS | 30.0% | |
| !! | ACTGGATTTTTCAAAAGAGA+AGG | - | chr5_4:7479379-7479398 | Msa0834460:CDS | 30.0% |
| ! | TTTTCAAAAGAGAAGGAACA+TGG | - | chr5_4:7479386-7479405 | Msa0834460:CDS | 30.0% |
| TATAACACAAGGTTTCATGA+TGG | - | chr5_4:7479595-7479614 | Msa0834460:intron | 30.0% | |
| ATTGGTTAATCAAGTGAAGA+TGG | - | chr5_4:7479729-7479748 | Msa0834460:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5_4:7479799-7479818 | Msa0834460:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+AGG | - | chr5_4:7479868-7479887 | Msa0834460:CDS | 30.0% | |
| TATGGAACTGATCTTTATGT+TGG | - | chr5_4:7479970-7479989 | Msa0834460:CDS | 30.0% | |
| CTTTATGTTGGACACATTAA+AGG | - | chr5_4:7479982-7480001 | Msa0834460:CDS | 30.0% | |
| TGGACACATTAAAGGAATTA+AGG | - | chr5_4:7479990-7480009 | Msa0834460:CDS | 30.0% | |
| GCAAGAAACACATTTCACAA+AGG | - | chr5_4:7477880-7477899 | Msa0834460:exon | 35.0% | |
| AAACACCAACTCTACAGTTA+AGG | - | chr5_4:7477904-7477923 | Msa0834460:CDS | 35.0% | |
| ! | GTTTTCCTTAACTGTAGAGT+TGG | + | chr5_4:7477912-7477931 | None:intergenic | 35.0% |
| CAGTTAAGGAAAACAAGAGA+TGG | - | chr5_4:7477918-7477937 | Msa0834460:CDS | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5_4:7478060-7478079 | Msa0834460:CDS | 35.0% |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5_4:7478187-7478206 | Msa0834460:CDS | 35.0% | |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5_4:7478229-7478248 | Msa0834460:CDS | 35.0% |
| !! | TTTTTGGTCTAGCAAGACTA+TGG | + | chr5_4:7478394-7478413 | None:intergenic | 35.0% |
| TTTACACAGACAAATTAGGG+AGG | - | chr5_4:7478509-7478528 | Msa0834460:CDS | 35.0% | |
| GAATCCTGAATACATCTCAT+TGG | - | chr5_4:7478534-7478553 | Msa0834460:CDS | 35.0% | |
| !!! | CTTCAGTTTTGAGGTTAGAT+GGG | - | chr5_4:7478691-7478710 | Msa0834460:intron | 35.0% |
| AGATGGGTGATTAAGATACT+TGG | - | chr5_4:7478707-7478726 | Msa0834460:intron | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | - | chr5_4:7479006-7479025 | Msa0834460:intron | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | - | chr5_4:7479007-7479026 | Msa0834460:intron | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5_4:7479105-7479124 | Msa0834460:intron | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5_4:7479114-7479133 | None:intergenic | 35.0% | |
| AGCAATTGGGAAGAAAGAAT+GGG | - | chr5_4:7479306-7479325 | Msa0834460:CDS | 35.0% | |
| ! | ATTGTATTGACCTGAGTCAT+GGG | + | chr5_4:7479344-7479363 | None:intergenic | 35.0% |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5_4:7479361-7479380 | Msa0834460:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5_4:7479373-7479392 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5_4:7479419-7479438 | Msa0834460:CDS | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5_4:7479445-7479464 | Msa0834460:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | chr5_4:7479480-7479499 | None:intergenic | 35.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5_4:7479517-7479536 | Msa0834460:intron | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5_4:7479530-7479549 | None:intergenic | 35.0% |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5_4:7479527-7479546 | Msa0834460:intron | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5_4:7479628-7479647 | None:intergenic | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5_4:7479666-7479685 | Msa0834460:CDS | 35.0% | |
| GGTGAACAATTAGCATGATT+AGG | + | chr5_4:7479703-7479722 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5_4:7479711-7479730 | Msa0834460:CDS | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5_4:7479724-7479743 | None:intergenic | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | chr5_4:7479891-7479910 | Msa0834460:CDS | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5_4:7479916-7479935 | Msa0834460:CDS | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | chr5_4:7479949-7479968 | None:intergenic | 35.0% |
| CACGTATTTCATCATGTTGA+TGG | - | chr5_4:7480056-7480075 | Msa0834460:CDS | 35.0% | |
| ! | ATGTTGATGGATCATGTGTA+TGG | - | chr5_4:7480069-7480088 | Msa0834460:CDS | 35.0% |
| !! | TGCTGATTCGAATAGAGTAC+CGG | - | chr5_4:7477979-7477998 | Msa0834460:CDS | 40.0% |
| AATGGCAACATCACAAACAC+CGG | + | chr5_4:7478001-7478020 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5_4:7478006-7478025 | Msa0834460:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5_4:7478016-7478035 | Msa0834460:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5_4:7478104-7478123 | Msa0834460:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5_4:7478108-7478127 | Msa0834460:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5_4:7478127-7478146 | Msa0834460:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5_4:7478174-7478193 | Msa0834460:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5_4:7478238-7478257 | Msa0834460:CDS | 40.0% |
| TTGGCAAATAGAGCCCAAAT+TGG | + | chr5_4:7478317-7478336 | None:intergenic | 40.0% | |
| ! | CTTATTTCTTCAAGCACCCA+TGG | + | chr5_4:7478472-7478491 | None:intergenic | 40.0% |
| CATGGGTGCTTGAAGAAATA+AGG | - | chr5_4:7478470-7478489 | Msa0834460:CDS | 40.0% | |
| TGTCTGTGTAAACTAGCTCA+GGG | + | chr5_4:7478501-7478520 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACTAGCTC+AGG | + | chr5_4:7478502-7478521 | None:intergenic | 40.0% | |
| CATCCCAATGAGATGTATTC+AGG | + | chr5_4:7478541-7478560 | None:intergenic | 40.0% | |
| TAATCGGAGTAGACTTGAAG+TGG | + | chr5_4:7478595-7478614 | None:intergenic | 40.0% | |
| ACGGAAGCTTCTCATGTAAT+CGG | + | chr5_4:7478611-7478630 | None:intergenic | 40.0% | |
| ! | CAACTTGTGCTTCAGTTTTG+AGG | - | chr5_4:7478682-7478701 | Msa0834460:intron | 40.0% |
| !!! | GCTTCAGTTTTGAGGTTAGA+TGG | - | chr5_4:7478690-7478709 | Msa0834460:intron | 40.0% |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5_4:7479069-7479088 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5_4:7479070-7479089 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5_4:7479082-7479101 | Msa0834460:intron | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5_4:7479097-7479116 | None:intergenic | 40.0% | |
| CAGCAATTGGGAAGAAAGAA+TGG | - | chr5_4:7479305-7479324 | Msa0834460:CDS | 40.0% | |
| GCAATTGGGAAGAAAGAATG+GGG | - | chr5_4:7479307-7479326 | Msa0834460:CDS | 40.0% | |
| AAGAAAGAATGGGGAACAAG+TGG | - | chr5_4:7479316-7479335 | Msa0834460:CDS | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+GGG | + | chr5_4:7479343-7479362 | None:intergenic | 40.0% |
| ! | GATTGTATTGACCTGAGTCA+TGG | + | chr5_4:7479345-7479364 | None:intergenic | 40.0% |
| GGAACATGGAACACAGAATA+TGG | - | chr5_4:7479400-7479419 | Msa0834460:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5_4:7479435-7479454 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | chr5_4:7479568-7479587 | Msa0834460:intron | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5_4:7479584-7479603 | Msa0834460:intron | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5_4:7479631-7479650 | Msa0834460:intron | 40.0% | |
| CATGCTAATTGTTCACCAGA+AGG | - | chr5_4:7479706-7479725 | Msa0834460:CDS | 40.0% | |
| AAGATGGCAACAAAGATTGC+AGG | - | chr5_4:7479745-7479764 | Msa0834460:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | chr5_4:7479820-7479839 | Msa0834460:CDS | 40.0% |
| GGTTGCTTGAAGGTGAAAAT+TGG | - | chr5_4:7479878-7479897 | Msa0834460:CDS | 40.0% | |
| TGCTTGAAGGTGAAAATTGG+AGG | - | chr5_4:7479881-7479900 | Msa0834460:CDS | 40.0% | |
| ACCACCAACATTATTGAGCT+TGG | - | chr5_4:7480167-7480186 | Msa0834460:CDS | 40.0% | |
| ACCAAGCTCAATAATGTTGG+TGG | + | chr5_4:7480171-7480190 | None:intergenic | 40.0% | |
| CACACCAAGCTCAATAATGT+TGG | + | chr5_4:7480174-7480193 | None:intergenic | 40.0% | |
| ! | CTTGGTGTGCGTAGATAATT+TGG | - | chr5_4:7480185-7480204 | Msa0834460:exon | 40.0% |
| GTGTGCGTAGATAATTTGGT+GGG | - | chr5_4:7480189-7480208 | Msa0834460:exon | 40.0% | |
| TCGTGGTTATGAGCAATCGA+TGG | + | chr5_4:7477959-7477978 | None:intergenic | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | + | chr5_4:7477976-7477995 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5_4:7478015-7478034 | Msa0834460:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5_4:7478019-7478038 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5_4:7478019-7478038 | Msa0834460:CDS | 45.0% | |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5_4:7478076-7478095 | Msa0834460:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGTGTTGA+AGG | - | chr5_4:7478085-7478104 | Msa0834460:CDS | 45.0% |
| ! | TGCTGGTGTTGAAGGAGTAA+TGG | - | chr5_4:7478093-7478112 | Msa0834460:CDS | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5_4:7478107-7478126 | Msa0834460:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5_4:7478109-7478128 | Msa0834460:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5_4:7478251-7478270 | Msa0834460:CDS | 45.0% |
| GCAAATAGAGCCCAAATTGG+TGG | + | chr5_4:7478314-7478333 | None:intergenic | 45.0% | |
| ATAGCATTCCTCTACCACCA+TGG | - | chr5_4:7478452-7478471 | Msa0834460:CDS | 45.0% | |
| TAGCATTCCTCTACCACCAT+GGG | - | chr5_4:7478453-7478472 | Msa0834460:CDS | 45.0% | |
| ATTTCTTCAAGCACCCATGG+TGG | + | chr5_4:7478469-7478488 | None:intergenic | 45.0% | |
| ACACAGACAAATTAGGGAGG+AGG | - | chr5_4:7478512-7478531 | Msa0834460:CDS | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5_4:7479013-7479032 | Msa0834460:intron | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5_4:7479061-7479080 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5_4:7479058-7479077 | Msa0834460:intron | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5_4:7479065-7479084 | Msa0834460:intron | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5_4:7479076-7479095 | Msa0834460:intron | 45.0% | |
| AAGCATCAGCTGCAGCAATT+GGG | - | chr5_4:7479293-7479312 | Msa0834460:CDS | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | - | chr5_4:7479748-7479767 | Msa0834460:CDS | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCTT+TGG | - | chr5_4:7479774-7479793 | Msa0834460:CDS | 45.0% |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5_4:7479919-7479938 | Msa0834460:CDS | 45.0% | |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | chr5_4:7479929-7479948 | Msa0834460:CDS | 45.0% |
| GGTGTGCGTAGATAATTTGG+TGG | - | chr5_4:7480188-7480207 | Msa0834460:exon | 45.0% | |
| !!! | TTTTTTTTTTTTATATTTGT+TGG | - | chr5_4:7480124-7480143 | Msa0834460:CDS | 5.0% |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5_4:7478562-7478581 | Msa0834460:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5_4:7478574-7478593 | None:intergenic | 50.0% | |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5_4:7479023-7479042 | Msa0834460:intron | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5_4:7479040-7479059 | None:intergenic | 50.0% | |
| ! | GAAGCATCAGCTGCAGCAAT+TGG | - | chr5_4:7479292-7479311 | Msa0834460:CDS | 50.0% |
| ATTGCAGGTGGTGAACTTGC+TGG | - | chr5_4:7479760-7479779 | Msa0834460:CDS | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5_4:7478114-7478133 | Msa0834460:CDS | 55.0% |
| TCAAGCACCCATGGTGGTAG+AGG | + | chr5_4:7478463-7478482 | None:intergenic | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5_4:7479022-7479041 | Msa0834460:intron | 55.0% | |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5_4:7479024-7479043 | Msa0834460:intron | 55.0% | |
| ACAAGTGGACCCCATGACTC+AGG | - | chr5_4:7479331-7479350 | Msa0834460:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7477708 | 7480227 | 7477708 | ID=Msa0834460;Name=Msa0834460 |
| chr5_4 | mRNA | 7477708 | 7480227 | 7477708 | ID=Msa0834460-mRNA-1;Parent=Msa0834460;Name=Msa0834460-mRNA-1;_AED=0.29;_eAED=0.29;_QI=29|1|1|1|1|1|4|180|543 |
| chr5_4 | exon | 7477708 | 7478661 | 7477708 | ID=Msa0834460-mRNA-1:exon:3354;Parent=Msa0834460-mRNA-1 |
| chr5_4 | exon | 7478809 | 7478919 | 7478809 | ID=Msa0834460-mRNA-1:exon:3353;Parent=Msa0834460-mRNA-1 |
| chr5_4 | exon | 7479269 | 7479479 | 7479269 | ID=Msa0834460-mRNA-1:exon:3352;Parent=Msa0834460-mRNA-1 |
| chr5_4 | exon | 7479663 | 7480227 | 7479663 | ID=Msa0834460-mRNA-1:exon:3351;Parent=Msa0834460-mRNA-1 |
| chr5_4 | five_prime_UTR | 7480199 | 7480227 | 7480199 | ID=Msa0834460-mRNA-1:five_prime_utr;Parent=Msa0834460-mRNA-1 |
| chr5_4 | CDS | 7479663 | 7480198 | 7479663 | ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1 |
| chr5_4 | CDS | 7479269 | 7479479 | 7479269 | ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1 |
| chr5_4 | CDS | 7478809 | 7478919 | 7478809 | ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1 |
| chr5_4 | CDS | 7477888 | 7478661 | 7477888 | ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1 |
| chr5_4 | three_prime_UTR | 7477708 | 7477887 | 7477708 | ID=Msa0834460-mRNA-1:three_prime_utr;Parent=Msa0834460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
