AlfalfaGEDB | Msa0834460

M. sativa cultivar zhongmu-4 / Msa0834460

KEGG: K01177
GO: GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700
PFAM: PF01373.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834460	XP_003611409.1	97.422	543	14	0	1	543	1	543	0.0	1108

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834460	sp\|O23553\|BAM3_ARATH	70.471	552	150	7	1	543	1	548	0.0	813

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834460	G7JYN3	97.422	543	14	0	1	543	1	543	0.0	1108

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008850	Msa0834460	0.810871	9.292236e-51	-8.615850e-47
Msa0014410	Msa0834460	0.820887	5.407933e-53	-8.615850e-47
Msa0020630	Msa0834460	0.801659	8.112597e-49	-8.615850e-47
Msa0038310	Msa0834460	0.820659	6.103396e-53	-8.615850e-47
Msa0044710	Msa0834460	0.809434	1.895887e-50	-8.615850e-47
Msa0055280	Msa0834460	0.802439	5.606723e-49	-8.615850e-47
Msa0064550	Msa0834460	0.815902	7.286023e-52	-8.615850e-47
Msa0068410	Msa0834460	0.835401	1.714320e-56	-8.615850e-47
Msa0096020	Msa0834460	0.813332	2.699960e-51	-8.615850e-47
Msa0101060	Msa0834460	0.805123	1.553889e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834460	MtrunA17_Chr5g0400001	97.422	543	14	0	1	543	1	543	0.0	1108
Msa0834460	MtrunA17_Chr5g0399991	91.743	545	41	2	1	543	1	543	0.0	1047
Msa0834460	MtrunA17_Chr4g0055281	74.182	550	126	4	1	543	1	541	0.0	851
Msa0834460	MtrunA17_Chr6g0481031	63.594	434	146	2	87	508	106	539	0.0	611
Msa0834460	MtrunA17_Chr4g0023601	50.115	435	200	4	85	505	11	442	6.15e-156	454
Msa0834460	MtrunA17_Chr2g0323051	50.229	436	200	4	84	505	83	515	4.45e-150	443
Msa0834460	MtrunA17_Chr8g0388651	46.916	454	222	7	72	508	61	512	9.33e-140	415
Msa0834460	MtrunA17_Chr7g0247631	46.413	446	222	6	73	505	251	692	5.98e-125	382
Msa0834460	MtrunA17_Chr2g0286431	39.421	449	259	5	74	517	70	510	9.61e-108	332
Msa0834460	MtrunA17_Chr5g0408851	37.214	481	280	10	42	508	172	644	8.43e-103	323

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834460	AT4G17090.1	70.471	552	150	7	1	543	1	548	0.0	813
Msa0834460	AT3G23920.1	59.592	490	179	4	34	508	56	541	0.0	612
Msa0834460	AT4G15210.1	48.853	436	205	5	85	505	12	444	9.34e-149	436
Msa0834460	AT4G15210.2	52.308	390	181	4	85	472	12	398	1.35e-146	428
Msa0834460	AT2G32290.1	48.506	435	208	5	84	505	75	506	1.21e-140	419
Msa0834460	AT4G00490.1	48.636	440	209	6	87	513	95	530	2.36e-140	417
Msa0834460	AT4G15210.3	49.492	394	182	4	126	505	1	391	2.88e-138	408
Msa0834460	AT4G15210.4	49.492	394	182	4	126	505	1	391	2.88e-138	408
Msa0834460	AT5G55700.1	44.064	438	228	4	86	506	91	528	3.24e-131	393
Msa0834460	AT2G45880.1	44.796	442	227	6	74	502	235	672	3.35e-122	375

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Find 130 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATATTTCAAACAAG+TGG	0.507306	5_4:-7478423	Msa0834460:CDS
AAACACCAACTCTACAGTTA+AGG	0.445155	5_4:-7480009	Msa0834460:CDS
AAACTATCTGCCAAAATAGC+TGG	0.456022	5_4:-7478396	Msa0834460:CDS
AAGAAAGAATGGGGAACAAG+TGG	0.590370	5_4:-7478597	Msa0834460:CDS
AAGAAGTATATTGATTTATT+AGG	0.162007	5_4:-7477819	Msa0834460:three_prime_UTR
AAGATGGCAACAAAGATTGC+AGG	0.463188	5_4:-7478168	Msa0834460:CDS
AAGCATCAGCTGCAGCAATT+GGG	0.535892	5_4:-7478620	Msa0834460:CDS
AAGGAGTAATGGTTGATGCT+TGG	0.565190	5_4:-7479809	Msa0834460:CDS
AAGTGGGACTAGGTCCATGT+GGG	0.602013	5_4:-7478890	Msa0834460:CDS
AATAATCTGTAAATCTGTCA+CGG	0.588821	5_4:+7479286	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGAGCAAACACTAAAATA+TGG	-	chr5_4:7477718-7477737	Msa0834460:three_prime_UTR	30.0%
AGTTAAGGAAAACAAGAGAT+GGG	-	chr5_4:7477919-7477938	Msa0834460:CDS	30.0%
GCTTCCCAATTATAATTCAT+AGG	+	chr5_4:7478154-7478173	None:intergenic	30.0%
CTAGTTTACACAGACAAATT+AGG	-	chr5_4:7478505-7478524	Msa0834460:CDS	30.0%
AATCCTGAATACATCTCATT+GGG	-	chr5_4:7478535-7478554	Msa0834460:CDS	30.0%
ATTAAGACCAAATTGTTTGC+AGG	-	chr5_4:7478994-7479013	Msa0834460:intron	30.0%
TGAATTTCCTGCAAACAATT+TGG	+	chr5_4:7479004-7479023	None:intergenic	30.0%
ACAGTATATGAGATCTTCTT+TGG	-	chr5_4:7479270-7479289	Msa0834460:CDS	30.0%
TCAATACAATCAATTTCCTG+AGG	-	chr5_4:7479354-7479373	Msa0834460:CDS	30.0%
TATAACACAAGGTTTCATGA+TGG	-	chr5_4:7479595-7479614	Msa0834460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	7477708	7480227	7477708	ID=Msa0834460;Name=Msa0834460
chr5_4	mRNA	7477708	7480227	7477708	ID=Msa0834460-mRNA-1;Parent=Msa0834460;Name=Msa0834460-mRNA-1;_AED=0.29;_eAED=0.29;_QI=29\|1\|1\|1\|1\|1\|4\|180\|543
chr5_4	exon	7477708	7478661	7477708	ID=Msa0834460-mRNA-1:exon:3354;Parent=Msa0834460-mRNA-1
chr5_4	exon	7478809	7478919	7478809	ID=Msa0834460-mRNA-1:exon:3353;Parent=Msa0834460-mRNA-1
chr5_4	exon	7479269	7479479	7479269	ID=Msa0834460-mRNA-1:exon:3352;Parent=Msa0834460-mRNA-1
chr5_4	exon	7479663	7480227	7479663	ID=Msa0834460-mRNA-1:exon:3351;Parent=Msa0834460-mRNA-1
chr5_4	five_prime_UTR	7480199	7480227	7480199	ID=Msa0834460-mRNA-1:five_prime_utr;Parent=Msa0834460-mRNA-1
chr5_4	CDS	7479663	7480198	7479663	ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1
chr5_4	CDS	7479269	7479479	7479269	ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1
chr5_4	CDS	7478809	7478919	7478809	ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1
chr5_4	CDS	7477888	7478661	7477888	ID=Msa0834460-mRNA-1:cds;Parent=Msa0834460-mRNA-1
chr5_4	three_prime_UTR	7477708	7477887	7477708	ID=Msa0834460-mRNA-1:three_prime_utr;Parent=Msa0834460-mRNA-1

Gene Sequence

>Msa0834460

ATGGCTTTAACACTTCATTCTTCAATTTCCTTCATTCACAAAATAGAAACAAGAGTCTTAAAATCTCTTGATGATTTTTCTTCCAACAAAGTTTCTTGTCCAAAAATTAAACCTTTGTTTCATCTCAAAGCAAAGAGTTCAATGCAAGAAACACATTTCACAAAGGAAAACACCAACTCTACAGTTAAGGAAAACAAGAGATGGGAGAAGATTCACGTGCCATCGATTGCTCATAACCACGATGCTGATTCGAATAGAGTACCGGTGTTTGTGATGTTGCCATTAGACACGGTAACAATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAGAGTGCTGGTGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAATTATAATTGGGAAGCTTATGCTGAGCTTGTTCAGATGGTACAAAAACATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCTTGCAGCATTCCTCTACCACCATGGGTGCTTGAAGAAATAAGGAAGAACCCTGAGCTAGTTTACACAGACAAATTAGGGAGGAGGAATCCTGAATACATCTCATTGGGATGTGATTCAGTGCCTGTTCTAGCAGGAAGAACTCCACTTCAAGTCTACTCCGATTACATGAGAAGCTTCCGTGACAGATTTACAGATTATTTGGGCAATGTTATCATAGAAATTCAAGTGGGACTAGGTCCATGTGGGGAGTTGAGATATCCATCTTACCCTGAAACTGATGGAACTTGGAAGTTTCCAGGAATTGGAGAATTCCAATGCTATGACAAGTATATGAGATCTTCTTTGGAAGCATCAGCTGCAGCAATTGGGAAGAAAGAATGGGGAACAAGTGGACCCCATGACTCAGGTCAATACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGAGAAGGAACATGGAACACAGAATATGGAGATTTCTTCCTTGATTGGTACTCAAGCAAACTTGTTGAACATGGTGAGAGAATCCTTGTATCAGCCAAAAGCATATTTCAAACAAGTGGAGTGAAACTATCTGCCAAAATAGCTGGAATTCATTGGCATTACAATGCAAGATCTCATGCAACTGAATTAACTGCAGGTTACTATAACACAAGGTTTCATGATGGTTATATACCAATAGCACAAATGCTAGCAAAACATGGAGTTATACTAAATTTCACATGCATGGAAATGAAGGATAATGAACAACCTAATCATGCTAATTGTTCACCAGAAGGATTGGTTAATCAAGTGAAGATGGCAACAAAGATTGCAGGTGGTGAACTTGCTGGTGAGAATGCTTTGGAGAGATATGATTCAAGTGCTTATGGTCAAGTTTTGTCAACAAGTGGATTAAGTGCTTTTACATATCTAAGAATAAATAAGAGGTTGCTTGAAGGTGAAAATTGGAGGCAATTTGTGGACTTTGTTGTGAGTATGTCTGATGGTGGTAAACCAAGGCTTTCAAAATCTGATTCATATGGAACTGATCTTTATGTTGGACACATTAAAGGAATTAAGGAGAGTGAAGTTATAATAGAGATTGCTCTTGTGTGA

Protein sequence

>Msa0834460

MALTLHSSISFIHKIETRVLKSLDDFSSNKVSCPKIKPLFHLKAKSSMQETHFTKENTNSTVKENKRWEKIHVPSIAHNHDADSNRVPVFVMLPLDTVTMGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMNYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEIRKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWKFPGIGEFQCYDKYMRSSLEASAAAIGKKEWGTSGPHDSGQYNQFPEDTGFFKREGTWNTEYGDFFLDWYSSKLVEHGERILVSAKSIFQTSGVKLSAKIAGIHWHYNARSHATELTAGYYNTRFHDGYIPIAQMLAKHGVILNFTCMEMKDNEQPNHANCSPEGLVNQVKMATKIAGGELAGENALERYDSSAYGQVLSTSGLSAFTYLRINKRLLEGENWRQFVDFVVSMSDGGKPRLSKSDSYGTDLYVGHIKGIKESEVIIEIALV*