Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797000 | XP_003611409.1 | 97.606 | 543 | 13 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797000 | sp|O23553|BAM3_ARATH | 70.109 | 552 | 152 | 7 | 1 | 543 | 1 | 548 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797000 | G7JYN3 | 97.606 | 543 | 13 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0797000 | 0.806549 | 7.793261e-50 | -8.615850e-47 |
| Msa0064550 | Msa0797000 | 0.804189 | 2.434450e-49 | -8.615850e-47 |
| Msa0068410 | Msa0797000 | 0.806418 | 8.305503e-50 | -8.615850e-47 |
| Msa0096020 | Msa0797000 | 0.810992 | 8.746871e-51 | -8.615850e-47 |
| Msa0610360 | Msa0797000 | 0.808313 | 3.292385e-50 | -8.615850e-47 |
| Msa0610770 | Msa0797000 | 0.803134 | 4.029572e-49 | -8.615850e-47 |
| Msa0614980 | Msa0797000 | 0.804241 | 2.374242e-49 | -8.615850e-47 |
| Msa0621780 | Msa0797000 | 0.826075 | 3.310703e-54 | -8.615850e-47 |
| Msa0622910 | Msa0797000 | -0.812195 | 4.790087e-51 | -8.615850e-47 |
| Msa0628100 | Msa0797000 | 0.801809 | 7.557444e-49 | -8.615850e-47 |
| Msa0629440 | Msa0797000 | -0.816746 | 4.717640e-52 | -8.615850e-47 |
| Msa0644770 | Msa0797000 | -0.810891 | 9.197468e-51 | -8.615850e-47 |
| Msa0649310 | Msa0797000 | 0.800265 | 1.562845e-48 | -8.615850e-47 |
| Msa0650640 | Msa0797000 | 0.847822 | 9.064956e-60 | -8.615850e-47 |
| Msa0650650 | Msa0797000 | 0.841347 | 5.020905e-58 | -8.615850e-47 |
| Msa0650730 | Msa0797000 | 0.814118 | 1.813209e-51 | -8.615850e-47 |
| Msa0650740 | Msa0797000 | 0.843655 | 1.225825e-58 | -8.615850e-47 |
| Msa0650890 | Msa0797000 | 0.810652 | 1.036298e-50 | -8.615850e-47 |
| Msa0651320 | Msa0797000 | 0.815477 | 9.063617e-52 | -8.615850e-47 |
| Msa0662120 | Msa0797000 | 0.802192 | 6.305288e-49 | -8.615850e-47 |
| Msa0667070 | Msa0797000 | -0.805088 | 1.580551e-49 | -8.615850e-47 |
| Msa0676100 | Msa0797000 | 0.803502 | 3.380677e-49 | -8.615850e-47 |
| Msa0693490 | Msa0797000 | 0.810623 | 1.051413e-50 | -8.615850e-47 |
| Msa0713210 | Msa0797000 | 0.906731 | 1.084385e-80 | -8.615850e-47 |
| Msa0713220 | Msa0797000 | 0.891872 | 2.670831e-74 | -8.615850e-47 |
| Msa0713230 | Msa0797000 | 0.895612 | 8.125011e-76 | -8.615850e-47 |
| Msa0754350 | Msa0797000 | 0.850763 | 1.375936e-60 | -8.615850e-47 |
| Msa0755080 | Msa0797000 | 0.866145 | 3.531564e-65 | -8.615850e-47 |
| Msa0755090 | Msa0797000 | 0.874901 | 4.699485e-68 | -8.615850e-47 |
| Msa0790640 | Msa0797000 | 0.808362 | 3.214816e-50 | -8.615850e-47 |
| Msa0795710 | Msa0797000 | 0.825597 | 4.297707e-54 | -8.615850e-47 |
| Msa0796950 | Msa0797000 | 0.923149 | 3.884463e-89 | -8.615850e-47 |
| Msa0797000 | Msa0833450 | 0.804959 | 1.681569e-49 | -8.615850e-47 |
| Msa0797000 | Msa0834450 | 0.872695 | 2.609627e-67 | -8.615850e-47 |
| Msa0797000 | Msa0834460 | 0.886102 | 4.580958e-72 | -8.615850e-47 |
| Msa0797000 | Msa0834600 | 0.821580 | 3.744806e-53 | -8.615850e-47 |
| Msa0797000 | Msa0899130 | 0.821237 | 4.492911e-53 | -8.615850e-47 |
| Msa0797000 | Msa0984000 | 0.805397 | 1.361431e-49 | -8.615850e-47 |
| Msa0797000 | Msa1012920 | 0.802801 | 4.720559e-49 | -8.615850e-47 |
| Msa0797000 | Msa1037020 | 0.806738 | 7.110106e-50 | -8.615850e-47 |
| Msa0797000 | Msa1134560 | 0.823421 | 1.397999e-53 | -8.615850e-47 |
| Msa0797000 | Msa1162980 | 0.800204 | 1.608272e-48 | -8.615850e-47 |
| Msa0797000 | Msa1164530 | 0.806454 | 8.163818e-50 | -8.615850e-47 |
| Msa0797000 | Msa1176070 | 0.805064 | 1.598963e-49 | -8.615850e-47 |
| Msa0797000 | Msa1182830 | 0.827474 | 1.533333e-54 | -8.615850e-47 |
| Msa0797000 | Msa1198720 | 0.800118 | 1.674415e-48 | -8.615850e-47 |
| Msa0797000 | Msa1206760 | 0.812775 | 3.577989e-51 | -8.615850e-47 |
| Msa0797000 | Msa1206830 | 0.802568 | 5.274659e-49 | -8.615850e-47 |
| Msa0797000 | Msa1211390 | 0.810858 | 9.350963e-51 | -8.615850e-47 |
| Msa0797000 | Msa1219370 | 0.809119 | 2.214543e-50 | -8.615850e-47 |
| Msa0797000 | Msa1241820 | 0.849620 | 2.877146e-60 | -8.615850e-47 |
| Msa0797000 | Msa1272950 | 0.827837 | 1.254802e-54 | -8.615850e-47 |
| Msa0797000 | Msa1282920 | 0.806395 | 8.400094e-50 | -8.615850e-47 |
| Msa0797000 | Msa1306190 | 0.813235 | 2.835988e-51 | -8.615850e-47 |
| Msa0797000 | Msa1306200 | 0.818842 | 1.587544e-52 | -8.615850e-47 |
| Msa0797000 | Msa1317710 | 0.800822 | 1.203176e-48 | -8.615850e-47 |
| Msa0797000 | Msa1349810 | 0.807021 | 6.196194e-50 | -8.615850e-47 |
| Msa0797000 | Msa1353670 | 0.841078 | 5.910324e-58 | -8.615850e-47 |
| Msa0797000 | Msa1353680 | 0.808850 | 2.529525e-50 | -8.615850e-47 |
| Msa0797000 | Msa1354090 | 0.807079 | 6.021018e-50 | -8.615850e-47 |
| Msa0797000 | Msa1356180 | 0.885813 | 5.880868e-72 | -8.615850e-47 |
| Msa0797000 | Msa1368980 | 0.814679 | 1.362330e-51 | -8.615850e-47 |
| Msa0797000 | Msa1403950 | 0.822880 | 1.868921e-53 | -8.615850e-47 |
| Msa0797000 | Msa1450980 | 0.801701 | 7.952943e-49 | -8.615850e-47 |
| Msa0797000 | Msa1454110 | 0.801309 | 9.569483e-49 | -8.615850e-47 |
| Msa0154240 | Msa0797000 | 0.805136 | 1.544146e-49 | -8.615850e-47 |
| Msa0154270 | Msa0797000 | 0.817079 | 3.970758e-52 | -8.615850e-47 |
| Msa0197180 | Msa0797000 | 0.822971 | 1.779927e-53 | -8.615850e-47 |
| Msa0223100 | Msa0797000 | 0.807676 | 4.498933e-50 | -8.615850e-47 |
| Msa0223290 | Msa0797000 | 0.806928 | 6.480824e-50 | -8.615850e-47 |
| Msa0223380 | Msa0797000 | 0.808367 | 3.207636e-50 | -8.615850e-47 |
| Msa0376340 | Msa0797000 | 0.814469 | 1.516769e-51 | -8.615850e-47 |
| Msa0377280 | Msa0797000 | 0.809303 | 2.022246e-50 | -8.615850e-47 |
| Msa0379540 | Msa0797000 | 0.812476 | 4.159925e-51 | -8.615850e-47 |
| Msa0401340 | Msa0797000 | 0.818704 | 1.706132e-52 | -8.615850e-47 |
| Msa0404220 | Msa0797000 | 0.827219 | 1.765802e-54 | -8.615850e-47 |
| Msa0404690 | Msa0797000 | 0.802369 | 5.797788e-49 | -8.615850e-47 |
| Msa0424780 | Msa0797000 | 0.809127 | 2.206248e-50 | -8.615850e-47 |
| Msa0448120 | Msa0797000 | 0.825262 | 5.160354e-54 | -8.615850e-47 |
| Msa0462590 | Msa0797000 | 0.816369 | 5.730313e-52 | -8.615850e-47 |
| Msa0238940 | Msa0797000 | 0.813630 | 2.322934e-51 | -8.615850e-47 |
| Msa0260190 | Msa0797000 | 0.810133 | 1.341408e-50 | -8.615850e-47 |
| Msa0265580 | Msa0797000 | 0.804760 | 1.850403e-49 | -8.615850e-47 |
| Msa0308770 | Msa0797000 | 0.800065 | 1.716733e-48 | -8.615850e-47 |
| Msa0316750 | Msa0797000 | 0.825056 | 5.772837e-54 | -8.615850e-47 |
| Msa0318070 | Msa0797000 | 0.810323 | 1.220599e-50 | -8.615850e-47 |
| Msa0501510 | Msa0797000 | 0.821964 | 3.051278e-53 | -8.615850e-47 |
| Msa0504410 | Msa0797000 | 0.800160 | 1.641890e-48 | -8.615850e-47 |
| Msa0516160 | Msa0797000 | 0.817557 | 3.099989e-52 | -8.615850e-47 |
| Msa0530380 | Msa0797000 | 0.834713 | 2.556525e-56 | -8.615850e-47 |
| Msa0555960 | Msa0797000 | 0.803499 | 3.386098e-49 | -8.615850e-47 |
| Msa0577320 | Msa0797000 | -0.811460 | 6.923836e-51 | -8.615850e-47 |
| Msa0579340 | Msa0797000 | 0.856942 | 2.286014e-62 | -8.615850e-47 |
| Msa0579350 | Msa0797000 | 0.831082 | 2.042173e-55 | -8.615850e-47 |
| Msa0579360 | Msa0797000 | 0.819072 | 1.407495e-52 | -8.615850e-47 |
| Msa0580540 | Msa0797000 | 0.832880 | 7.344984e-56 | -8.615850e-47 |
| Msa0581920 | Msa0797000 | 0.805294 | 1.430834e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797000 | MtrunA17_Chr5g0400001 | 97.606 | 543 | 13 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1110 |
| Msa0797000 | MtrunA17_Chr5g0399991 | 91.927 | 545 | 40 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1049 |
| Msa0797000 | MtrunA17_Chr4g0055281 | 74.364 | 550 | 125 | 4 | 1 | 543 | 1 | 541 | 0.0 | 853 |
| Msa0797000 | MtrunA17_Chr6g0481031 | 63.364 | 434 | 147 | 2 | 87 | 508 | 106 | 539 | 0.0 | 610 |
| Msa0797000 | MtrunA17_Chr4g0023601 | 49.885 | 435 | 201 | 4 | 85 | 505 | 11 | 442 | 5.58e-156 | 454 |
| Msa0797000 | MtrunA17_Chr2g0323051 | 50.000 | 436 | 201 | 4 | 84 | 505 | 83 | 515 | 3.32e-150 | 443 |
| Msa0797000 | MtrunA17_Chr8g0388651 | 46.476 | 454 | 224 | 7 | 72 | 508 | 61 | 512 | 5.69e-139 | 413 |
| Msa0797000 | MtrunA17_Chr7g0247631 | 46.188 | 446 | 223 | 6 | 73 | 505 | 251 | 692 | 8.25e-125 | 382 |
| Msa0797000 | MtrunA17_Chr2g0286431 | 39.644 | 449 | 258 | 5 | 74 | 517 | 70 | 510 | 1.32e-108 | 334 |
| Msa0797000 | MtrunA17_Chr5g0408851 | 37.214 | 481 | 280 | 10 | 42 | 508 | 172 | 644 | 2.00e-103 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797000 | AT4G17090.1 | 70.109 | 552 | 152 | 7 | 1 | 543 | 1 | 548 | 0.0 | 810 |
| Msa0797000 | AT3G23920.1 | 59.388 | 490 | 180 | 4 | 34 | 508 | 56 | 541 | 0.0 | 611 |
| Msa0797000 | AT4G15210.1 | 48.853 | 436 | 205 | 5 | 85 | 505 | 12 | 444 | 4.28e-149 | 437 |
| Msa0797000 | AT4G15210.2 | 52.308 | 390 | 181 | 4 | 85 | 472 | 12 | 398 | 6.24e-147 | 429 |
| Msa0797000 | AT2G32290.1 | 48.276 | 435 | 209 | 5 | 84 | 505 | 75 | 506 | 8.94e-141 | 419 |
| Msa0797000 | AT4G00490.1 | 48.409 | 440 | 210 | 6 | 87 | 513 | 95 | 530 | 4.38e-140 | 416 |
| Msa0797000 | AT4G15210.3 | 49.492 | 394 | 182 | 4 | 126 | 505 | 1 | 391 | 1.41e-138 | 409 |
| Msa0797000 | AT4G15210.4 | 49.492 | 394 | 182 | 4 | 126 | 505 | 1 | 391 | 1.41e-138 | 409 |
| Msa0797000 | AT5G55700.1 | 44.064 | 438 | 228 | 4 | 86 | 506 | 91 | 528 | 1.44e-131 | 394 |
| Msa0797000 | AT2G45880.1 | 44.796 | 442 | 227 | 6 | 74 | 502 | 235 | 672 | 1.45e-122 | 376 |
| Msa0797000 | AT5G45300.1 | 39.593 | 442 | 249 | 8 | 79 | 508 | 247 | 682 | 5.45e-100 | 317 |
| Msa0797000 | AT5G45300.2 | 39.593 | 442 | 249 | 8 | 79 | 508 | 245 | 680 | 6.02e-100 | 317 |
| Msa0797000 | AT5G45300.3 | 39.593 | 442 | 249 | 8 | 79 | 508 | 261 | 696 | 8.30e-100 | 317 |
| Msa0797000 | AT5G55700.2 | 45.566 | 327 | 165 | 3 | 193 | 506 | 39 | 365 | 2.61e-99 | 305 |
| Msa0797000 | AT5G18670.1 | 38.642 | 427 | 244 | 4 | 87 | 506 | 87 | 502 | 8.19e-91 | 289 |
Find 131 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5_3:-9066852 | Msa0797000:CDS |
| AAGAAGTATATTGATTTATT+AGG | 0.162007 | 5_3:-9065402 | Msa0797000:three_prime_UTR |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5_3:+9065969 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_3:+9066415 | None:intergenic |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5_3:-9065514 | Msa0797000:CDS |
| ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | 5_3:-9067307 | Msa0797000:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5_3:-9066226 | Msa0797000:intron |
| AGAAGTATATTGATTTATTA+GGG | 0.258447 | 5_3:-9065401 | Msa0797000:three_prime_UTR |
| TTGGTTTACACGGACAAATT+AGG | 0.280825 | 5_3:-9066977 | Msa0797000:CDS |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | 5_3:+9066008 | None:intergenic |
| TGGACACATTAAAGGAATTA+AGG | 0.290030 | 5_3:-9065506 | Msa0797000:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_3:-9066400 | Msa0797000:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_3:-9067339 | Msa0797000:CDS |
| GGAACATGGAATACAGAATA+TGG | 0.310076 | 5_3:-9066096 | Msa0797000:CDS |
| CTTGGTGTGCGTAGATAATT+TGG | 0.311994 | 5_3:-9065304 | Msa0797000:intron |
| GGTTGCTTGAGGGTGAAAAT+TGG | 0.313491 | 5_3:-9065618 | Msa0797000:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_3:-9066135 | Msa0797000:CDS |
| CATTGGAATTCTCCAATTCC+TGG | 0.324491 | 5_3:+9066388 | None:intergenic |
| GAAGCATCAGCTGCCGCAAT+TGG | 0.335419 | 5_3:-9066204 | Msa0797000:CDS |
| CACATATTTCATCATGTTGA+TGG | 0.338068 | 5_3:-9065440 | Msa0797000:three_prime_UTR |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_3:-9066406 | Msa0797000:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.346178 | 5_3:-9065544 | Msa0797000:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5_3:-9066077 | Msa0797000:CDS |
| ATAGAGCAAACACTAAAATA+TGG | 0.356278 | 5_3:-9067735 | Msa0797000:exon |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5_3:-9067202 | Msa0797000:intron |
| TGGTTTACACGGACAAATTA+GGG | 0.360131 | 5_3:-9066976 | Msa0797000:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5_3:+9065871 | None:intergenic |
| GGTGAACAATTAGCATGATT+AGG | 0.375380 | 5_3:+9065796 | None:intergenic |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5_3:-9067393 | Msa0797000:CDS |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5_3:-9066851 | Msa0797000:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_3:+9067437 | None:intergenic |
| CATCCCAGTGAGATATATTC+AGG | 0.390835 | 5_3:+9066944 | None:intergenic |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5_3:-9065697 | Msa0797000:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5_3:-9065969 | Msa0797000:CDS |
| GCTTCCCAATTATACTTCAT+AGG | 0.415265 | 5_3:+9067302 | None:intergenic |
| CTGATTTCTTCCATCACCCA+TGG | 0.422552 | 5_3:+9067013 | None:intergenic |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5_3:-9066469 | Msa0797000:CDS |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5_3:-9066903 | Msa0797000:CDS |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.429269 | 5_3:-9067368 | Msa0797000:CDS |
| ACGGAAGCTTCTCATATAAT+CGG | 0.432975 | 5_3:+9066874 | None:intergenic |
| TATGGAACTGATCTTTATGT+TGG | 0.435975 | 5_3:-9065526 | Msa0797000:CDS |
| ACTTGCTGGTGAGAATGCTT+TGG | 0.442476 | 5_3:-9065722 | Msa0797000:CDS |
| TGAAAATTGGAGGCAATTTG+TGG | 0.443560 | 5_3:-9065605 | Msa0797000:CDS |
| AAACACCAACTCTACAGTTA+AGG | 0.445155 | 5_3:-9067549 | Msa0797000:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5_3:+9066911 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_3:+9066416 | None:intergenic |
| CATGGGTGATGGAAGAAATC+AGG | 0.453663 | 5_3:-9067012 | Msa0797000:CDS |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5_3:-9065830 | Msa0797000:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5_3:-9065979 | Msa0797000:CDS |
| ACTTGATTAACCAATCCTTC+TGG | 0.458432 | 5_3:+9065775 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5_3:-9065751 | Msa0797000:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5_3:-9067030 | Msa0797000:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_3:+9066424 | None:intergenic |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.467245 | 5_3:-9067377 | Msa0797000:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_3:-9067345 | Msa0797000:CDS |
| TGGTCCTATGAAGTATAATT+GGG | 0.480087 | 5_3:-9067306 | Msa0797000:CDS |
| AAATCCTGAATATATCTCAC+TGG | 0.483131 | 5_3:-9066948 | Msa0797000:CDS |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5_3:-9065736 | Msa0797000:CDS |
| TCCATCACCCATGGAGGTAG+AGG | 0.485439 | 5_3:+9067022 | None:intergenic |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5_3:-9065839 | Msa0797000:CDS |
| TCCTCTACCTCCATGGGTGA+TGG | 0.488299 | 5_3:-9067023 | Msa0797000:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_3:-9066417 | Msa0797000:CDS |
| TTTGTACCTTGTCATAACAT+TGG | 0.496838 | 5_3:+9066371 | None:intergenic |
| ATTGGTTAATCAAGTGAAGA+TGG | 0.500028 | 5_3:-9065767 | Msa0797000:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5_3:-9065785 | Msa0797000:CDS |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_3:-9067437 | Msa0797000:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | 5_3:-9066006 | Msa0797000:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_3:-9067346 | Msa0797000:CDS |
| AAGCATCAGCTGCCGCAATT+GGG | 0.510467 | 5_3:-9066203 | Msa0797000:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_3:-9067215 | Msa0797000:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_3:-9067279 | Msa0797000:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_3:-9067344 | Msa0797000:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5_3:-9066920 | Msa0797000:CDS |
| CCACTCTTTCTTCCCAATTG+CGG | 0.529912 | 5_3:+9066191 | None:intergenic |
| TAGCATTCCTCTACCTCCAT+GGG | 0.534553 | 5_3:-9067029 | Msa0797000:CDS |
| TTGTCCGTGTAAACCAACTC+AGG | 0.538197 | 5_3:+9066983 | None:intergenic |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_3:-9066424 | Msa0797000:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_3:-9067438 | Msa0797000:CDS |
| CAGTTAAGGAAAACAAGAGA+TGG | 0.540014 | 5_3:-9067535 | Msa0797000:CDS |
| ATAAACAAGAGGTTGCTTGA+GGG | 0.540389 | 5_3:-9065628 | Msa0797000:CDS |
| TGCTTGAGGGTGAAAATTGG+AGG | 0.540642 | 5_3:-9065615 | Msa0797000:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.540672 | 5_3:+9066890 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5_3:-9067360 | Msa0797000:CDS |
| AATCAGGAAGAACCCTGAGT+TGG | 0.548086 | 5_3:-9066996 | Msa0797000:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5_3:+9066064 | None:intergenic |
| GAACCCTGAGTTGGTTTACA+CGG | 0.553776 | 5_3:-9066987 | Msa0797000:CDS |
| CTTATTTAAGAATAAACAAG+AGG | 0.556225 | 5_3:-9065639 | Msa0797000:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_3:-9065901 | Msa0797000:CDS |
| CCGCAATTGGGAAGAAAGAG+TGG | 0.559917 | 5_3:-9066191 | Msa0797000:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5_3:-9065912 | Msa0797000:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_3:-9067349 | Msa0797000:CDS |
| AATAAACAAGAGGTTGCTTG+AGG | 0.573981 | 5_3:-9065629 | Msa0797000:CDS |
| CATGCTAATTGTTCACCAGA+AGG | 0.574244 | 5_3:-9065790 | Msa0797000:CDS |
| AGTTAAGGAAAACAAGAGAT+GGG | 0.578306 | 5_3:-9067534 | Msa0797000:CDS |
| CGCAATTGGGAAGAAAGAGT+GGG | 0.579608 | 5_3:-9066190 | Msa0797000:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5_3:-9065865 | Msa0797000:CDS |
| TTTGCTTTGAGATGAAACAA+AGG | 0.587033 | 5_3:+9067605 | None:intergenic |
| AATAATCTGTAAATCTGTCA+CGG | 0.588821 | 5_3:+9066855 | None:intergenic |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | 5_3:-9065928 | Msa0797000:CDS |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5_3:-9066180 | Msa0797000:CDS |
| ATGTTGATGGATCATGTGTA+TGG | 0.592754 | 5_3:-9065427 | Msa0797000:three_prime_UTR |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5_3:-9066476 | Msa0797000:intron |
| GTGTGCGTAGATAATTTGGC+GGG | 0.596198 | 5_3:-9065300 | Msa0797000:intron |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_3:+9066445 | None:intergenic |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5_3:-9067474 | Msa0797000:CDS |
| AATCCTGAATATATCTCACT+GGG | 0.599678 | 5_3:-9066947 | Msa0797000:CDS |
| GGTGTGCGTAGATAATTTGG+CGG | 0.601692 | 5_3:-9065301 | Msa0797000:intron |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5_3:-9066459 | Msa0797000:CDS |
| ACAAGTGGACCACATGACTC+AGG | 0.607814 | 5_3:-9066165 | Msa0797000:CDS |
| GAAGTATATTGATTTATTAG+GGG | 0.609443 | 5_3:-9065400 | Msa0797000:three_prime_UTR |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5_3:-9065580 | Msa0797000:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_3:-9066051 | Msa0797000:CDS |
| TGTCCGTGTAAACCAACTCA+GGG | 0.634904 | 5_3:+9066984 | None:intergenic |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5_3:-9065577 | Msa0797000:CDS |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5_3:-9066475 | Msa0797000:intron |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5_3:-9066460 | Msa0797000:CDS |
| TTGTATTGACCTGAGTCATG+TGG | 0.648053 | 5_3:+9066156 | None:intergenic |
| TCGTGGTTATGAGCAATCGA+TGG | 0.660833 | 5_3:+9067497 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_3:+9067455 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_3:-9067434 | Msa0797000:CDS |
| ATTTCTTCCATCACCCATGG+AGG | 0.672048 | 5_3:+9067016 | None:intergenic |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5_3:-9067573 | Msa0797000:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5_3:-9065748 | Msa0797000:CDS |
| AGAATTCCAATGTTATGACA+AGG | 0.679414 | 5_3:-9066377 | Msa0797000:intron |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5_3:+9067480 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5_3:-9066142 | Msa0797000:CDS |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5_3:-9065567 | Msa0797000:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_3:-9067447 | Msa0797000:CDS |
| TTTACACGGACAAATTAGGG+AGG | 0.705506 | 5_3:-9066973 | Msa0797000:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5_3:-9066458 | Msa0797000:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.714858 | 5_3:-9066189 | Msa0797000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATCTAAGACTAATT+TGG | - | chr5_3:9065912-9065931 | Msa0797000:CDS | 15.0% |
| !!! | TTTATAAGATGAATACTTTT+TGG | - | chr5_3:9066415-9066434 | Msa0797000:CDS | 15.0% |
| !!! | TTATAAGATGAATACTTTTT+GGG | - | chr5_3:9066416-9066435 | Msa0797000:CDS | 15.0% |
| !!! | AAGAAGTATATTGATTTATT+AGG | - | chr5_3:9067578-9067597 | Msa0797000:CDS | 15.0% |
| !!! | AGAAGTATATTGATTTATTA+GGG | - | chr5_3:9067579-9067598 | Msa0797000:CDS | 15.0% |
| !!! | TGAAACAAAGGTTTAATTTT+TGG | + | chr5_3:9065366-9065385 | None:intergenic | 20.0% |
| !!! | TAGTCTTAGATTTTTATGTT+TGG | + | chr5_3:9065909-9065928 | None:intergenic | 20.0% |
| !!! | GTCTAACATTAATATGATTT+TGG | + | chr5_3:9066671-9066690 | None:intergenic | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | + | chr5_3:9066737-9066756 | None:intergenic | 20.0% |
| !! | CTTATTTAAGAATAAACAAG+AGG | - | chr5_3:9067341-9067360 | Msa0797000:CDS | 20.0% |
| !!! | GAAGTATATTGATTTATTAG+GGG | - | chr5_3:9067580-9067599 | Msa0797000:CDS | 20.0% |
| ! | ATAGAGCAAACACTAAAATA+TGG | - | chr5_3:9065245-9065264 | Msa0797000:three_prime_UTR | 25.0% |
| !!! | TGTTTCTATTTTGTGAATGA+AGG | + | chr5_3:9065295-9065314 | None:intergenic | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | chr5_3:9065827-9065846 | Msa0797000:CDS | 25.0% |
| ! | AATAATCTGTAAATCTGTCA+CGG | + | chr5_3:9066128-9066147 | None:intergenic | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5_3:9066128-9066147 | Msa0797000:CDS | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5_3:9066129-9066148 | Msa0797000:CDS | 25.0% |
| ! | ACAAAATTGAATTATGAGCT+AGG | + | chr5_3:9066391-9066410 | None:intergenic | 25.0% |
| ! | ATGATGATAAAACTAAGACT+TGG | - | chr5_3:9066450-9066469 | Msa0797000:CDS | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | chr5_3:9066975-9066994 | None:intergenic | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | chr5_3:9066974-9066993 | Msa0797000:CDS | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | chr5_3:9067141-9067160 | Msa0797000:intron | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | chr5_3:9067436-9067455 | Msa0797000:CDS | 25.0% |
| ! | TTTTGGACAAGAAACTTTGT+TGG | + | chr5_3:9065349-9065368 | None:intergenic | 30.0% |
| !! | TTTGCTTTGAGATGAAACAA+AGG | + | chr5_3:9065378-9065397 | None:intergenic | 30.0% |
| AGTTAAGGAAAACAAGAGAT+GGG | - | chr5_3:9065446-9065465 | Msa0797000:three_prime_UTR | 30.0% | |
| ATGGTCCTATGAAGTATAAT+TGG | - | chr5_3:9065673-9065692 | Msa0797000:CDS | 30.0% | |
| TGGTCCTATGAAGTATAATT+GGG | - | chr5_3:9065674-9065693 | Msa0797000:CDS | 30.0% | |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | chr5_3:9065753-9065772 | Msa0797000:CDS | 30.0% |
| TCACATTTAAGAGCCTAAAT+TGG | + | chr5_3:9065843-9065862 | None:intergenic | 30.0% | |
| AAATCCTGAATATATCTCAC+TGG | - | chr5_3:9066032-9066051 | Msa0797000:CDS | 30.0% | |
| AATCCTGAATATATCTCACT+GGG | - | chr5_3:9066033-9066052 | Msa0797000:CDS | 30.0% | |
| ! | GTATCTAAGACGTTACAATA+AGG | + | chr5_3:9066322-9066341 | None:intergenic | 30.0% |
| ATTAAGACCAAATTGTTTGC+AGG | - | chr5_3:9066492-9066511 | Msa0797000:intron | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | + | chr5_3:9066502-9066521 | None:intergenic | 30.0% | |
| AGAATTCCAATGTTATGACA+AGG | - | chr5_3:9066603-9066622 | Msa0797000:intron | 30.0% | |
| TTTGTACCTTGTCATAACAT+TGG | + | chr5_3:9066612-9066631 | None:intergenic | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5_3:9066754-9066773 | Msa0797000:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5_3:9066838-9066857 | Msa0797000:CDS | 30.0% | |
| !! | AGGATACTGGATTTTTCAAA+AGG | - | chr5_3:9066858-9066877 | Msa0797000:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | - | chr5_3:9066859-9066878 | Msa0797000:CDS | 30.0% |
| TATAACACAAGGTTTCATGA+TGG | - | chr5_3:9067079-9067098 | Msa0797000:intron | 30.0% | |
| ATTGGTTAATCAAGTGAAGA+TGG | - | chr5_3:9067213-9067232 | Msa0797000:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5_3:9067283-9067302 | Msa0797000:CDS | 30.0% | |
| TATGGAACTGATCTTTATGT+TGG | - | chr5_3:9067454-9067473 | Msa0797000:CDS | 30.0% | |
| CTTTATGTTGGACACATTAA+AGG | - | chr5_3:9067466-9067485 | Msa0797000:CDS | 30.0% | |
| TGGACACATTAAAGGAATTA+AGG | - | chr5_3:9067474-9067493 | Msa0797000:CDS | 30.0% | |
| CACATATTTCATCATGTTGA+TGG | - | chr5_3:9067540-9067559 | Msa0797000:CDS | 30.0% | |
| GCAAGAAACACATTTCACAA+AGG | - | chr5_3:9065407-9065426 | Msa0797000:three_prime_UTR | 35.0% | |
| AAACACCAACTCTACAGTTA+AGG | - | chr5_3:9065431-9065450 | Msa0797000:three_prime_UTR | 35.0% | |
| ! | GTTTTCCTTAACTGTAGAGT+TGG | + | chr5_3:9065439-9065458 | None:intergenic | 35.0% |
| CAGTTAAGGAAAACAAGAGA+TGG | - | chr5_3:9065445-9065464 | Msa0797000:three_prime_UTR | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5_3:9065587-9065606 | Msa0797000:CDS | 35.0% |
| GCTTCCCAATTATACTTCAT+AGG | + | chr5_3:9065681-9065700 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5_3:9065714-9065733 | Msa0797000:CDS | 35.0% | |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5_3:9065756-9065775 | Msa0797000:CDS | 35.0% |
| CATTTAAGAGCCTAAATTGG+TGG | + | chr5_3:9065840-9065859 | None:intergenic | 35.0% | |
| TTGGTTTACACGGACAAATT+AGG | - | chr5_3:9066003-9066022 | Msa0797000:CDS | 35.0% | |
| TGGTTTACACGGACAAATTA+GGG | - | chr5_3:9066004-9066023 | Msa0797000:CDS | 35.0% | |
| ACGGAAGCTTCTCATATAAT+CGG | + | chr5_3:9066109-9066128 | None:intergenic | 35.0% | |
| !!! | CTTCAGTTTTGAGGTTAGAT+GGG | - | chr5_3:9066189-9066208 | Msa0797000:CDS | 35.0% |
| AGATGGGTGATTAAGATACT+TGG | - | chr5_3:9066205-9066224 | Msa0797000:CDS | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | - | chr5_3:9066504-9066523 | Msa0797000:intron | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | - | chr5_3:9066505-9066524 | Msa0797000:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5_3:9066845-9066864 | Msa0797000:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5_3:9066857-9066876 | None:intergenic | 35.0% | |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | - | chr5_3:9066863-9066882 | Msa0797000:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | - | chr5_3:9066870-9066889 | Msa0797000:CDS | 35.0% |
| GGAACATGGAATACAGAATA+TGG | - | chr5_3:9066884-9066903 | Msa0797000:CDS | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5_3:9066903-9066922 | Msa0797000:CDS | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5_3:9066929-9066948 | Msa0797000:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACT+AGG | + | chr5_3:9066964-9066983 | None:intergenic | 35.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5_3:9067001-9067020 | Msa0797000:CDS | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5_3:9067014-9067033 | None:intergenic | 35.0% |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5_3:9067011-9067030 | Msa0797000:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5_3:9067112-9067131 | None:intergenic | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5_3:9067150-9067169 | Msa0797000:intron | 35.0% | |
| GGTGAACAATTAGCATGATT+AGG | + | chr5_3:9067187-9067206 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5_3:9067195-9067214 | Msa0797000:intron | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5_3:9067208-9067227 | None:intergenic | 35.0% | |
| AATAAACAAGAGGTTGCTTG+AGG | - | chr5_3:9067351-9067370 | Msa0797000:CDS | 35.0% | |
| ATAAACAAGAGGTTGCTTGA+GGG | - | chr5_3:9067352-9067371 | Msa0797000:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | chr5_3:9067375-9067394 | Msa0797000:CDS | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5_3:9067400-9067419 | Msa0797000:CDS | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | chr5_3:9067433-9067452 | None:intergenic | 35.0% |
| ! | ATGTTGATGGATCATGTGTA+TGG | - | chr5_3:9067553-9067572 | Msa0797000:CDS | 35.0% |
| !! | TGCTGATTCGAATAGAGTAC+CGG | - | chr5_3:9065506-9065525 | Msa0797000:CDS | 40.0% |
| AATGGCAACATCACAAACAC+CGG | + | chr5_3:9065528-9065547 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5_3:9065533-9065552 | Msa0797000:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5_3:9065543-9065562 | Msa0797000:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5_3:9065631-9065650 | Msa0797000:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5_3:9065635-9065654 | Msa0797000:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5_3:9065654-9065673 | Msa0797000:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5_3:9065701-9065720 | Msa0797000:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5_3:9065765-9065784 | Msa0797000:CDS | 40.0% |
| TTTACACGGACAAATTAGGG+AGG | - | chr5_3:9066007-9066026 | Msa0797000:CDS | 40.0% | |
| CATCCCAGTGAGATATATTC+AGG | + | chr5_3:9066039-9066058 | None:intergenic | 40.0% | |
| ! | CAACTTGTGCTTCAGTTTTG+AGG | - | chr5_3:9066180-9066199 | Msa0797000:CDS | 40.0% |
| !!! | GCTTCAGTTTTGAGGTTAGA+TGG | - | chr5_3:9066188-9066207 | Msa0797000:CDS | 40.0% |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5_3:9066567-9066586 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5_3:9066568-9066587 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5_3:9066580-9066599 | Msa0797000:intron | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5_3:9066595-9066614 | None:intergenic | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+TGG | + | chr5_3:9066827-9066846 | None:intergenic | 40.0% |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5_3:9066919-9066938 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | chr5_3:9067052-9067071 | Msa0797000:intron | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5_3:9067068-9067087 | Msa0797000:intron | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5_3:9067115-9067134 | Msa0797000:intron | 40.0% | |
| CATGCTAATTGTTCACCAGA+AGG | - | chr5_3:9067190-9067209 | Msa0797000:intron | 40.0% | |
| AAGATGGCAACAAAGATTGC+AGG | - | chr5_3:9067229-9067248 | Msa0797000:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | chr5_3:9067304-9067323 | Msa0797000:CDS | 40.0% |
| ACCACCAACATTATTGAGCT+TGG | - | chr5_3:9067658-9067677 | Msa0797000:CDS | 40.0% | |
| ACCAAGCTCAATAATGTTGG+TGG | + | chr5_3:9067662-9067681 | None:intergenic | 40.0% | |
| CACACCAAGCTCAATAATGT+TGG | + | chr5_3:9067665-9067684 | None:intergenic | 40.0% | |
| ! | CTTGGTGTGCGTAGATAATT+TGG | - | chr5_3:9067676-9067695 | Msa0797000:CDS | 40.0% |
| TCGTGGTTATGAGCAATCGA+TGG | + | chr5_3:9065486-9065505 | None:intergenic | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | + | chr5_3:9065503-9065522 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5_3:9065542-9065561 | Msa0797000:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5_3:9065546-9065565 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5_3:9065546-9065565 | Msa0797000:CDS | 45.0% | |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5_3:9065603-9065622 | Msa0797000:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | chr5_3:9065612-9065631 | Msa0797000:CDS | 45.0% |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | chr5_3:9065620-9065639 | Msa0797000:CDS | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5_3:9065634-9065653 | Msa0797000:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5_3:9065636-9065655 | Msa0797000:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5_3:9065778-9065797 | Msa0797000:CDS | 45.0% |
| ATAGCATTCCTCTACCTCCA+TGG | - | chr5_3:9065950-9065969 | Msa0797000:CDS | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | chr5_3:9065951-9065970 | Msa0797000:CDS | 45.0% | |
| ATTTCTTCCATCACCCATGG+AGG | + | chr5_3:9065967-9065986 | None:intergenic | 45.0% | |
| CTGATTTCTTCCATCACCCA+TGG | + | chr5_3:9065970-9065989 | None:intergenic | 45.0% | |
| !! | CATGGGTGATGGAAGAAATC+AGG | - | chr5_3:9065968-9065987 | Msa0797000:CDS | 45.0% |
| AATCAGGAAGAACCCTGAGT+TGG | - | chr5_3:9065984-9066003 | Msa0797000:CDS | 45.0% | |
| !! | GAACCCTGAGTTGGTTTACA+CGG | - | chr5_3:9065993-9066012 | Msa0797000:CDS | 45.0% |
| TGTCCGTGTAAACCAACTCA+GGG | + | chr5_3:9065999-9066018 | None:intergenic | 45.0% | |
| TTGTCCGTGTAAACCAACTC+AGG | + | chr5_3:9066000-9066019 | None:intergenic | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5_3:9066093-9066112 | None:intergenic | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5_3:9066511-9066530 | Msa0797000:intron | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5_3:9066559-9066578 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5_3:9066556-9066575 | Msa0797000:intron | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5_3:9066563-9066582 | Msa0797000:intron | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5_3:9066574-9066593 | Msa0797000:intron | 45.0% | |
| CCACTCTTTCTTCCCAATTG+CGG | + | chr5_3:9066792-9066811 | None:intergenic | 45.0% | |
| CGCAATTGGGAAGAAAGAGT+GGG | - | chr5_3:9066790-9066809 | Msa0797000:intron | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | - | chr5_3:9066791-9066810 | Msa0797000:intron | 45.0% | |
| AAGAAAGAGTGGGGAACAAG+TGG | - | chr5_3:9066800-9066819 | Msa0797000:intron | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | - | chr5_3:9067232-9067251 | Msa0797000:CDS | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCTT+TGG | - | chr5_3:9067258-9067277 | Msa0797000:CDS | 45.0% |
| GGTTGCTTGAGGGTGAAAAT+TGG | - | chr5_3:9067362-9067381 | Msa0797000:CDS | 45.0% | |
| TGCTTGAGGGTGAAAATTGG+AGG | - | chr5_3:9067365-9067384 | Msa0797000:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5_3:9067403-9067422 | Msa0797000:CDS | 45.0% | |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | chr5_3:9067413-9067432 | Msa0797000:CDS | 45.0% |
| GGTGTGCGTAGATAATTTGG+CGG | - | chr5_3:9067679-9067698 | Msa0797000:CDS | 45.0% | |
| GTGTGCGTAGATAATTTGGC+GGG | - | chr5_3:9067680-9067699 | Msa0797000:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTATATTTGT+TGG | - | chr5_3:9067615-9067634 | Msa0797000:CDS | 5.0% |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5_3:9066060-9066079 | Msa0797000:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5_3:9066072-9066091 | None:intergenic | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | chr5_3:9066077-9066096 | Msa0797000:CDS | 50.0% | |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5_3:9066521-9066540 | Msa0797000:intron | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5_3:9066538-9066557 | None:intergenic | 50.0% | |
| AAGCATCAGCTGCCGCAATT+GGG | - | chr5_3:9066777-9066796 | Msa0797000:intron | 50.0% | |
| CCGCAATTGGGAAGAAAGAG+TGG | - | chr5_3:9066789-9066808 | Msa0797000:intron | 50.0% | |
| ACAAGTGGACCACATGACTC+AGG | - | chr5_3:9066815-9066834 | Msa0797000:intron | 50.0% | |
| ATTGCAGGTGGTGAACTTGC+TGG | - | chr5_3:9067244-9067263 | Msa0797000:CDS | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5_3:9065641-9065660 | Msa0797000:CDS | 55.0% |
| TCCTCTACCTCCATGGGTGA+TGG | - | chr5_3:9065957-9065976 | Msa0797000:CDS | 55.0% | |
| TCCATCACCCATGGAGGTAG+AGG | + | chr5_3:9065961-9065980 | None:intergenic | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5_3:9066520-9066539 | Msa0797000:intron | 55.0% | |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5_3:9066522-9066541 | Msa0797000:intron | 55.0% | |
| ! | GAAGCATCAGCTGCCGCAAT+TGG | - | chr5_3:9066776-9066795 | Msa0797000:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9065235 | 9067767 | 9065235 | ID=Msa0797000;Name=Msa0797000 |
| chr5_3 | mRNA | 9065235 | 9067767 | 9065235 | ID=Msa0797000-mRNA-1;Parent=Msa0797000;Name=Msa0797000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=29|1|1|1|0.75|0.6|5|193|543 |
| chr5_3 | exon | 9065235 | 9065312 | 9065235 | ID=Msa0797000-mRNA-1:exon:3836;Parent=Msa0797000-mRNA-1 |
| chr5_3 | exon | 9065356 | 9066244 | 9065356 | ID=Msa0797000-mRNA-1:exon:3835;Parent=Msa0797000-mRNA-1 |
| chr5_3 | exon | 9066378 | 9066488 | 9066378 | ID=Msa0797000-mRNA-1:exon:3834;Parent=Msa0797000-mRNA-1 |
| chr5_3 | exon | 9066838 | 9067048 | 9066838 | ID=Msa0797000-mRNA-1:exon:3833;Parent=Msa0797000-mRNA-1 |
| chr5_3 | exon | 9067203 | 9067767 | 9067203 | ID=Msa0797000-mRNA-1:exon:3832;Parent=Msa0797000-mRNA-1 |
| chr5_3 | five_prime_UTR | 9067739 | 9067767 | 9067739 | ID=Msa0797000-mRNA-1:five_prime_utr;Parent=Msa0797000-mRNA-1 |
| chr5_3 | CDS | 9067203 | 9067738 | 9067203 | ID=Msa0797000-mRNA-1:cds;Parent=Msa0797000-mRNA-1 |
| chr5_3 | CDS | 9066838 | 9067048 | 9066838 | ID=Msa0797000-mRNA-1:cds;Parent=Msa0797000-mRNA-1 |
| chr5_3 | CDS | 9066378 | 9066488 | 9066378 | ID=Msa0797000-mRNA-1:cds;Parent=Msa0797000-mRNA-1 |
| chr5_3 | CDS | 9065471 | 9066244 | 9065471 | ID=Msa0797000-mRNA-1:cds;Parent=Msa0797000-mRNA-1 |
| chr5_3 | three_prime_UTR | 9065356 | 9065470 | 9065356 | ID=Msa0797000-mRNA-1:three_prime_utr;Parent=Msa0797000-mRNA-1 |
| chr5_3 | three_prime_UTR | 9065235 | 9065312 | 9065235 | ID=Msa0797000-mRNA-1:three_prime_utr;Parent=Msa0797000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
