Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356150 | XP_003625511.1 | 85.068 | 221 | 25 | 4 | 1 | 214 | 1 | 220 | 4.32e-116 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356150 | G7L0L4 | 85.068 | 221 | 25 | 4 | 1 | 214 | 1 | 220 | 2.07e-116 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1356150 | Msa1385750 | 0.873351 | 1.572301e-67 | -8.615850e-47 |
| Msa1356150 | Msa1409220 | 0.866545 | 2.635941e-65 | -8.615850e-47 |
| Msa1356150 | Msa1434120 | 0.873267 | 1.678402e-67 | -8.615850e-47 |
| Msa1123800 | Msa1356150 | 0.923052 | 4.411428e-89 | -8.615850e-47 |
| Msa1169940 | Msa1356150 | 0.872081 | 4.183078e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356150 | MtrunA17_Chr7g0263051 | 85.068 | 221 | 25 | 4 | 1 | 214 | 1 | 220 | 3.98e-120 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356150 | AT3G53630.2 | 42.623 | 244 | 113 | 8 | 12 | 249 | 3 | 225 | 1.81e-48 | 161 |
| Msa1356150 | AT3G53630.1 | 46.305 | 203 | 92 | 6 | 12 | 210 | 3 | 192 | 1.90e-47 | 157 |
Find 96 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATGCAATCTTAATTT+TGG | 0.074580 | tig0015510:+180 | Msa1356150:intergenic |
| GATTGACCATAACCTCAATT+TGG | 0.202384 | tig0015510:-865 | Msa1356150:CDS |
| TGGGATTTGCACTGTGAAAA+TGG | 0.222632 | tig0015510:+200 | Msa1356150:intergenic |
| ACTCCAACTGGTTGTGAATA+AGG | 0.268058 | tig0015510:+2776 | Msa1356150:intergenic |
| AACAATGGACCAGTATAAAA+AGG | 0.309171 | tig0015510:+34 | Msa1356150:intergenic |
| CATTGAAATTTCAAGTTTGA+TGG | 0.324699 | tig0015510:-283 | Msa1356150:CDS |
| GTAACTGCTTCACCGGAATT+CGG | 0.343202 | tig0015510:+2962 | Msa1356150:intergenic |
| CTGTCGTCATTGACGTTGTC+TGG | 0.355101 | tig0015510:+3160 | Msa1356150:intergenic |
| TAGAACCCAAATTGAGGTTA+TGG | 0.365006 | tig0015510:+859 | Msa1356150:intergenic |
| TGTGAATTGTGAAATGGAAA+TGG | 0.366177 | tig0015510:+3336 | Msa1356150:intergenic |
| TGGCTGACGTTGAAGGCAAT+TGG | 0.369030 | tig0015510:+900 | Msa1356150:intergenic |
| CGGTGAAGCAGTTACGATTC+GGG | 0.372928 | tig0015510:-2954 | Msa1356150:CDS |
| ATTGACCATAACCTCAATTT+GGG | 0.373255 | tig0015510:-864 | Msa1356150:CDS |
| ATTCTCGAGGTGGGTGGTTG+TGG | 0.374448 | tig0015510:+3225 | Msa1356150:intergenic |
| AATCTTCGCTGTTGATTGTT+GGG | 0.374667 | tig0015510:+3254 | Msa1356150:intergenic |
| GATACGCTGAAGCCGAATTC+CGG | 0.405492 | tig0015510:-2974 | Msa1356150:CDS |
| AATAACTCATTATCTTTGCT+TGG | 0.411400 | tig0015510:-73 | Msa1356150:three_prime_UTR |
| CCGGTGAAGCAGTTACGATT+CGG | 0.415694 | tig0015510:-2955 | Msa1356150:CDS |
| TACTCGAAACCTTGATGAAA+AGG | 0.423065 | tig0015510:-3198 | Msa1356150:CDS |
| GTGAATTGTGAAATGGAAAT+GGG | 0.424607 | tig0015510:+3337 | Msa1356150:intergenic |
| AATAATCTTTGCTTCTCAAA+GGG | 0.425067 | tig0015510:+226 | Msa1356150:intergenic |
| GAATCTTCGCTGTTGATTGT+TGG | 0.431376 | tig0015510:+3253 | Msa1356150:intergenic |
| TCTTCATCTCCAACTCCAAC+TGG | 0.432362 | tig0015510:+2764 | Msa1356150:intergenic |
| TTTCGCCTGAGTATATTTAT+GGG | 0.433268 | tig0015510:-2832 | Msa1356150:CDS |
| GGAATGGCATGGGCATATCA+TGG | 0.438655 | tig0015510:-2876 | Msa1356150:CDS |
| GGCTGACGTTGAAGGCAATT+GGG | 0.439791 | tig0015510:+901 | Msa1356150:intergenic |
| CTTTAAAATCATACTTGTAA+AGG | 0.444260 | tig0015510:-145 | Msa1356150:three_prime_UTR |
| TTGCTTTCTGCCCGACCTCC+TGG | 0.447681 | tig0015510:+3059 | Msa1356150:intergenic |
| GTGAAATGAAAGAGATATGC+AGG | 0.447964 | tig0015510:+3309 | Msa1356150:intergenic |
| GCCCGACCTCCTGGTAAGTA+CGG | 0.449996 | tig0015510:+3068 | Msa1356150:intergenic |
| AAGCTGATTGTCAGTGGAGA+AGG | 0.455681 | tig0015510:-2998 | Msa1356150:CDS |
| CATCATCATCGGAGCCGAAA+AGG | 0.460905 | tig0015510:+3107 | Msa1356150:intergenic |
| CCCGTACTTACCAGGAGGTC+GGG | 0.461045 | tig0015510:-3069 | Msa1356150:CDS |
| GGGAGTATGTTGTGTGGGAA+TGG | 0.467402 | tig0015510:-2892 | Msa1356150:CDS |
| TGTTGTCAGCAAGGGTTTGA+AGG | 0.470639 | tig0015510:-2732 | Msa1356150:CDS |
| CGGGAGAGTAGTATTTGTGT+TGG | 0.470805 | tig0015510:-2935 | Msa1356150:CDS |
| GAATGGCATGGGCATATCAT+GGG | 0.474822 | tig0015510:-2875 | Msa1356150:CDS |
| CGCGAAGAGTCGAGAGTCGA+AGG | 0.475861 | tig0015510:-3031 | Msa1356150:CDS |
| GGGAGAGTAGTATTTGTGTT+GGG | 0.478013 | tig0015510:-2934 | Msa1356150:CDS |
| GGGATTTGCACTGTGAAAAT+GGG | 0.479435 | tig0015510:+201 | Msa1356150:intergenic |
| ATGGGGTATAATGATGATCA+TGG | 0.480640 | tig0015510:-2857 | Msa1356150:CDS |
| GGTCAATCCTGGTAGACAAC+TGG | 0.486687 | tig0015510:+880 | Msa1356150:intergenic |
| AAATAATCTTTGCTTCTCAA+AGG | 0.489359 | tig0015510:+225 | Msa1356150:intergenic |
| AGACAACTGGCTGACGTTGA+AGG | 0.491469 | tig0015510:+893 | Msa1356150:intergenic |
| ACGTCAGCCAGTTGTCTACC+AGG | 0.493612 | tig0015510:-887 | Msa1356150:CDS |
| ATTGAAATTTCAAGTTTGAT+GGG | 0.493745 | tig0015510:-282 | Msa1356150:CDS |
| TATTCACAACCAGTTGGAGT+TGG | 0.500442 | tig0015510:-2773 | Msa1356150:CDS |
| CGACGCTCCCCGTACTTACC+AGG | 0.500920 | tig0015510:-3077 | Msa1356150:CDS |
| ATACTGATGCTGCTCCTGCT+AGG | 0.512955 | tig0015510:-2691 | Msa1356150:CDS |
| AACCAAATTGTTGACCTTGG+AGG | 0.515992 | tig0015510:+2635 | Msa1356150:intergenic |
| CTTCATCGCAGTCTCAATGC+TGG | 0.528653 | tig0015510:-2665 | Msa1356150:CDS |
| CTGCGATGAAGAATCCTAGC+AGG | 0.528957 | tig0015510:+2677 | Msa1356150:intergenic |
| GATTGTTGGGAGGGAAGTCA+TGG | 0.529266 | tig0015510:+3267 | Msa1356150:intergenic |
| CCCCGTACTTACCAGGAGGT+CGG | 0.536020 | tig0015510:-3070 | Msa1356150:CDS |
| TTCGCTGTTGATTGTTGGGA+GGG | 0.540453 | tig0015510:+3258 | Msa1356150:intergenic |
| AGCTGATTGTCAGTGGAGAA+GGG | 0.540667 | tig0015510:-2997 | Msa1356150:CDS |
| CCGAATCGTAACTGCTTCAC+CGG | 0.541881 | tig0015510:+2955 | Msa1356150:intergenic |
| ATTGAGGTTATGGTCAATCC+TGG | 0.543767 | tig0015510:+869 | Msa1356150:intergenic |
| ATGCTGGTTCTGCTCCTCCA+AGG | 0.545858 | tig0015510:-2649 | Msa1356150:intron |
| CTCAAAGGGGATGAAAATGA+TGG | 0.547136 | tig0015510:+240 | Msa1356150:intergenic |
| GTCGTCTTCGTCATCATCAT+CGG | 0.554571 | tig0015510:+3096 | Msa1356150:intergenic |
| TAGTTGTAGAACCCAAATTG+AGG | 0.555399 | tig0015510:+853 | Msa1356150:intergenic |
| CTCGAGGTGGGTGGTTGTGG+AGG | 0.556596 | tig0015510:+3228 | Msa1356150:intergenic |
| TATGTTGTGTGGGAATGGCA+TGG | 0.562974 | tig0015510:-2887 | Msa1356150:CDS |
| CTTCGCTGTTGATTGTTGGG+AGG | 0.566623 | tig0015510:+3257 | Msa1356150:intergenic |
| GGAAGGGGAGTATGTTGTGT+GGG | 0.567393 | tig0015510:-2897 | Msa1356150:CDS |
| GTGTCATGACGATGAGGAAG+GGG | 0.570208 | tig0015510:-2912 | Msa1356150:CDS |
| AATTGGGAGAGCATCCCTCT+CGG | 0.583194 | tig0015510:+917 | Msa1356150:intergenic |
| CGTCCTTATTCACAACCAGT+TGG | 0.586989 | tig0015510:-2779 | Msa1356150:CDS |
| TGTGAATAAGGACGCTCCGA+AGG | 0.588363 | tig0015510:+2788 | Msa1356150:intergenic |
| TGAAGCTGATGTTGTCAGCA+AGG | 0.589393 | tig0015510:-2741 | Msa1356150:CDS |
| GCGAAGAGTCGAGAGTCGAA+GGG | 0.589719 | tig0015510:-3030 | Msa1356150:CDS |
| CGAGTAAGAGATTCTCGAGG+TGG | 0.590939 | tig0015510:+3215 | Msa1356150:intergenic |
| GGGTGTCATGACGATGAGGA+AGG | 0.592367 | tig0015510:-2914 | Msa1356150:CDS |
| GTTTGATGGGTTGCAAGCAG+AGG | 0.599701 | tig0015510:-269 | Msa1356150:CDS |
| TGGGGTATAATGATGATCAT+GGG | 0.601518 | tig0015510:-2856 | Msa1356150:CDS |
| CATGAACTGCATGGCCGAGA+GGG | 0.603779 | tig0015510:-931 | Msa1356150:CDS |
| GCTGATTGTCAGTGGAGAAG+GGG | 0.605349 | tig0015510:-2996 | Msa1356150:CDS |
| GAAGCTGATGTTGTCAGCAA+GGG | 0.607695 | tig0015510:-2740 | Msa1356150:CDS |
| TAATTCCCATAAATATACTC+AGG | 0.608602 | tig0015510:+2827 | Msa1356150:intergenic |
| ATTATCAAGCTGATTGTCAG+TGG | 0.609061 | tig0015510:-3004 | Msa1356150:CDS |
| ATAATCTTTGCTTCTCAAAG+GGG | 0.611929 | tig0015510:+227 | Msa1356150:intergenic |
| ATGTTGTGTGGGAATGGCAT+GGG | 0.613843 | tig0015510:-2886 | Msa1356150:CDS |
| GGTGTCATGACGATGAGGAA+GGG | 0.614911 | tig0015510:-2913 | Msa1356150:CDS |
| AATGGCATGGGCATATCATG+GGG | 0.631702 | tig0015510:-2874 | Msa1356150:CDS |
| AGGAAGGGGAGTATGTTGTG+TGG | 0.641212 | tig0015510:-2898 | Msa1356150:CDS |
| GCCGAAAAGGAAATCCTCGA+AGG | 0.646398 | tig0015510:+3120 | Msa1356150:intergenic |
| CGAAGAGTCGAGAGTCGAAG+GGG | 0.646968 | tig0015510:-3029 | Msa1356150:CDS |
| TAAGAGATTCTCGAGGTGGG+TGG | 0.661338 | tig0015510:+3219 | Msa1356150:intergenic |
| GAGTAAGAGATTCTCGAGGT+GGG | 0.663187 | tig0015510:+3216 | Msa1356150:intergenic |
| AAATTTGTGCATGAACTGCA+TGG | 0.671265 | tig0015510:-940 | Msa1356150:CDS |
| TGAAATGAAAGAGATATGCA+GGG | 0.672780 | tig0015510:+3310 | Msa1356150:intergenic |
| CGCTCCCCGTACTTACCAGG+AGG | 0.697086 | tig0015510:-3074 | Msa1356150:CDS |
| TGTTGGGTGTCATGACGATG+AGG | 0.711770 | tig0015510:-2918 | Msa1356150:CDS |
| GCATGAACTGCATGGCCGAG+AGG | 0.734910 | tig0015510:-932 | Msa1356150:CDS |
| TTTCGAGTAAGAGATTCTCG+AGG | 0.744371 | tig0015510:+3212 | Msa1356140:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTTTATTCCTT+TGG | - | tig0015510:779-798 | Msa1356150:intron | 10.0% |
| !!! | TTATGGTTTAAAATACAATT+TGG | - | tig0015510:1322-1341 | Msa1356150:intron | 15.0% |
| !!! | TATGGTTTAAAATACAATTT+GGG | - | tig0015510:1323-1342 | Msa1356150:intron | 15.0% |
| !!! | TTTTGGTAATTTAATGAATT+CGG | - | tig0015510:1447-1466 | Msa1356150:intron | 15.0% |
| !!! | AGTATTTTAAACCATATTTA+GGG | + | tig0015510:2123-2142 | Msa1356150:intergenic | 15.0% |
| !!! | TAGTATTTTAAACCATATTT+AGG | + | tig0015510:2124-2143 | Msa1356150:intergenic | 15.0% |
| !!! | AATATGGTTTAAAATACTAT+TGG | - | tig0015510:2125-2144 | Msa1356150:intron | 15.0% |
| !!! | TAAAAGCATAAAAAGATTAT+AGG | + | tig0015510:2878-2897 | Msa1356150:intergenic | 15.0% |
| !! | TAAGGTTGTTAAATGAATAT+CGG | + | tig0015510:1360-1379 | Msa1356150:intergenic | 20.0% |
| !! | AATCACTCTAGTTATTAAAT+GGG | - | tig0015510:1899-1918 | Msa1356150:intron | 20.0% |
| !!! | TAATTTAACTTCCCTAAATA+TGG | - | tig0015510:2109-2128 | Msa1356150:intron | 20.0% |
| !!! | TTTTGGTAATTTAACGAATT+CGG | - | tig0015510:2254-2273 | Msa1356150:intron | 20.0% |
| !!! | TGAGCTTTAATTAAACAAAA+AGG | + | tig0015510:2701-2720 | Msa1356150:intergenic | 20.0% |
| !! | TTGTTTAATTAAAGCTCAAA+TGG | - | tig0015510:2703-2722 | Msa1356150:CDS | 20.0% |
| !! | TGTTTAATTAAAGCTCAAAT+GGG | - | tig0015510:2704-2723 | Msa1356150:CDS | 20.0% |
| !!! | ATCTTTTATGTTTTGATGTT+TGG | - | tig0015510:3024-3043 | Msa1356150:CDS | 20.0% |
| !!! | ATTGAAATTTCAAGTTTGAT+GGG | - | tig0015510:3098-3117 | Msa1356150:CDS | 20.0% |
| !!! | CTTTAAAATCATACTTGTAA+AGG | - | tig0015510:3235-3254 | Msa1356150:CDS | 20.0% |
| !!! | GAGACATGATTTTTTATTTT+TGG | - | tig0015510:3262-3281 | Msa1356150:CDS | 20.0% |
| ! | TAATTCCCATAAATATACTC+AGG | + | tig0015510:556-575 | Msa1356150:intergenic | 25.0% |
| !! | TTTATGGGAATTATTTTCAG+AGG | - | tig0015510:563-582 | Msa1356150:intron | 25.0% |
| ! | ACAACAAAAAATCAAACCAA+AGG | + | tig0015510:798-817 | Msa1356150:intergenic | 25.0% |
| !! | GTGAATTTTGTTAGATTGTT+TGG | - | tig0015510:827-846 | Msa1356150:intron | 25.0% |
| !! | AATTTTGTTAGATTGTTTGG+TGG | - | tig0015510:830-849 | Msa1356150:intron | 25.0% |
| !! | ATTTTGTTAGATTGTTTGGT+GGG | - | tig0015510:831-850 | Msa1356150:intron | 25.0% |
| !! | TGGATTTAAAGTTATTGATC+CGG | - | tig0015510:1123-1142 | Msa1356150:intron | 25.0% |
| !!! | TATTTTAACTTCTCCAAATG+TGG | - | tig0015510:1298-1317 | Msa1356150:intron | 25.0% |
| ! | TTTAAACCATAAACCACATT+TGG | + | tig0015510:1314-1333 | Msa1356150:intergenic | 25.0% |
| ! | ATTCAAAACACAATCTTGAT+AGG | + | tig0015510:1532-1551 | Msa1356150:intergenic | 25.0% |
| ! | AATTAGCAAATTGAAACCAT+TGG | + | tig0015510:1595-1614 | Msa1356150:intergenic | 25.0% |
| ! | CTAAAATGATAGGTACAATT+GGG | - | tig0015510:1809-1828 | Msa1356150:intron | 25.0% |
| !! | TTTGTTATCTACATCAAATG+AGG | + | tig0015510:1873-1892 | Msa1356150:intergenic | 25.0% |
| ! | CAATCACTCTAGTTATTAAA+TGG | - | tig0015510:1898-1917 | Msa1356150:intron | 25.0% |
| !!! | GGATGTGTTGATTTTTATTA+TGG | - | tig0015510:2010-2029 | Msa1356150:intron | 25.0% |
| ! | TCTAAAAATGTGATTCTTGT+CGG | - | tig0015510:2221-2240 | Msa1356150:intron | 25.0% |
| ! | ACATAAAAGATTCATTTCAG+TGG | + | tig0015510:3015-3034 | Msa1356150:intergenic | 25.0% |
| !!! | CATTGAAATTTCAAGTTTGA+TGG | - | tig0015510:3097-3116 | Msa1356150:CDS | 25.0% |
| ! | AATAATCTTTGCTTCTCAAA+GGG | + | tig0015510:3157-3176 | Msa1356150:intergenic | 25.0% |
| ! | AAATAATCTTTGCTTCTCAA+AGG | + | tig0015510:3158-3177 | Msa1356150:intergenic | 25.0% |
| !! | ACAGATGCAATCTTAATTTT+GGG | + | tig0015510:3202-3221 | Msa1356150:intergenic | 25.0% |
| !! | AACAGATGCAATCTTAATTT+TGG | + | tig0015510:3203-3222 | Msa1356150:intergenic | 25.0% |
| ! | AGTTATTAAAAAACCATGTC+TGG | + | tig0015510:3294-3313 | Msa1356150:intergenic | 25.0% |
| ! | AATAACTCATTATCTTTGCT+TGG | - | tig0015510:3307-3326 | Msa1356150:five_prime_UTR | 25.0% |
| GTGAATTGTGAAATGGAAAT+GGG | + | tig0015510:46-65 | None:intergenic | 30.0% | |
| TGTGAATTGTGAAATGGAAA+TGG | + | tig0015510:47-66 | None:intergenic | 30.0% | |
| TGAAATGAAAGAGATATGCA+GGG | + | tig0015510:73-92 | None:intergenic | 30.0% | |
| ! | AAGTTGAATCCTTTTCATCA+AGG | + | tig0015510:194-213 | Msa1356150:intergenic | 30.0% |
| ! | TTTTCGCCTGAGTATATTTA+TGG | - | tig0015510:547-566 | Msa1356150:intron | 30.0% |
| TTTCGCCTGAGTATATTTAT+GGG | - | tig0015510:548-567 | Msa1356150:intron | 30.0% | |
| AAAAACCAAATTGTTGACCT+TGG | + | tig0015510:751-770 | Msa1356150:intergenic | 30.0% | |
| TGTAGATGAATTTAGCTGTT+AGG | - | tig0015510:942-961 | Msa1356150:CDS | 30.0% | |
| TTGAGCTATTAGATGAAGAT+TGG | - | tig0015510:1103-1122 | Msa1356150:intron | 30.0% | |
| CATTAAATTACCAAAACCCA+TGG | + | tig0015510:1443-1462 | Msa1356150:intergenic | 30.0% | |
| !! | TCAAGATTGTGTTTTGAATC+TGG | - | tig0015510:1533-1552 | Msa1356150:intron | 30.0% |
| ! | GTTTAGGATGCTAAAATGAT+AGG | - | tig0015510:1799-1818 | Msa1356150:intron | 30.0% |
| GCTAAAATGATAGGTACAAT+TGG | - | tig0015510:1808-1827 | Msa1356150:intron | 30.0% | |
| AACACAATAACAACATGGTT+TGG | + | tig0015510:2050-2069 | Msa1356150:intergenic | 30.0% | |
| CATTGAACACAATAACAACA+TGG | + | tig0015510:2055-2074 | Msa1356150:intergenic | 30.0% | |
| ! | CATGTTGTTATTGTGTTCAA+TGG | - | tig0015510:2053-2072 | Msa1356150:intron | 30.0% |
| CGTTAAATTACCAAAATCCA+TGG | + | tig0015510:2250-2269 | Msa1356150:intergenic | 30.0% | |
| AATCTTGATATGTGAGACAT+AGG | + | tig0015510:2327-2346 | Msa1356150:intergenic | 30.0% | |
| !! | TCAAGATTGTGTTTTGAATC+TGG | - | tig0015510:1533-1552 | Msa1356150:intron | 30.0% |
| ATTGACCATAACCTCAATTT+GGG | - | tig0015510:2516-2535 | Msa1356150:intron | 30.0% | |
| TAATTTCCGATGATGTAACA+GGG | + | tig0015510:2646-2665 | Msa1356150:intergenic | 30.0% | |
| ATAATTTCCGATGATGTAAC+AGG | + | tig0015510:2647-2666 | Msa1356150:intergenic | 30.0% | |
| ATAATCTTTGCTTCTCAAAG+GGG | + | tig0015510:3156-3175 | Msa1356150:intergenic | 30.0% | |
| !! | GGGTTTTGTGAATTGTGAAA+TGG | + | tig0015510:53-72 | None:intergenic | 35.0% |
| GTGAAATGAAAGAGATATGC+AGG | + | tig0015510:74-93 | None:intergenic | 35.0% | |
| ! | AATCTTCGCTGTTGATTGTT+GGG | + | tig0015510:129-148 | None:intergenic | 35.0% |
| TACTCGAAACCTTGATGAAA+AGG | - | tig0015510:182-201 | Msa1356150:three_prime_UTR | 35.0% | |
| ! | GAAATCCTCGAAGGATTTTT+GGG | + | tig0015510:254-273 | Msa1356150:intergenic | 35.0% |
| ATTATCAAGCTGATTGTCAG+TGG | - | tig0015510:376-395 | Msa1356150:intron | 35.0% | |
| ATGGGGTATAATGATGATCA+TGG | - | tig0015510:523-542 | Msa1356150:intron | 35.0% | |
| TGGGGTATAATGATGATCAT+GGG | - | tig0015510:524-543 | Msa1356150:intron | 35.0% | |
| GAATTTAGCTGTTAGGAAGT+TGG | - | tig0015510:949-968 | Msa1356150:CDS | 35.0% | |
| ! | GAAGTTGGATTTTCTGTTCT+GGG | - | tig0015510:964-983 | Msa1356150:CDS | 35.0% |
| ! | GTTCTGGGTTTAAGATGTTT+AGG | - | tig0015510:979-998 | Msa1356150:CDS | 35.0% |
| ! | GTTTAAGATGTTTAGGTGGT+AGG | - | tig0015510:986-1005 | Msa1356150:intron | 35.0% |
| GTAGATAATAAATGACGACG+CGG | - | tig0015510:1062-1081 | Msa1356150:intron | 35.0% | |
| CCATGAAGTCTCTATCAAAT+TGG | + | tig0015510:1165-1184 | Msa1356150:intergenic | 35.0% | |
| CCAATTTGATAGAGACTTCA+TGG | - | tig0015510:1162-1181 | Msa1356150:intron | 35.0% | |
| TTGATAGAGACTTCATGGAA+CGG | - | tig0015510:1167-1186 | Msa1356150:intron | 35.0% | |
| CATTGAACACAACAACAACA+GGG | + | tig0015510:1240-1259 | Msa1356150:intergenic | 35.0% | |
| !! | GTTCAATGGATTGATGTTGT+TGG | - | tig0015510:1252-1271 | Msa1356150:intron | 35.0% |
| ACTTCTCCAAATGTGGTTTA+TGG | - | tig0015510:1305-1324 | Msa1356150:intron | 35.0% | |
| AGTCACAACTTAAGTAGTTG+CGG | + | tig0015510:1386-1405 | Msa1356150:intergenic | 35.0% | |
| TTGAATCTGGTTGCTGATAT+TGG | - | tig0015510:1546-1565 | Msa1356150:intron | 35.0% | |
| GTCAATATGTCTTCATCCAA+TGG | - | tig0015510:1576-1595 | Msa1356150:intron | 35.0% | |
| !!! | AGAACCAAATTTTGAGGTCA+TGG | + | tig0015510:1726-1745 | Msa1356150:intergenic | 35.0% |
| ! | GTTGCTAGAACCAAATTTTG+AGG | + | tig0015510:1732-1751 | Msa1356150:intergenic | 35.0% |
| GGATGAAGTTTGGATCAAAT+TGG | + | tig0015510:1981-2000 | Msa1356150:intergenic | 35.0% | |
| CTGATCTTCATCTAATGACA+TGG | + | tig0015510:2081-2100 | Msa1356150:intergenic | 35.0% | |
| TAGGGAAGTTAAATTACGAG+TGG | + | tig0015510:2105-2124 | Msa1356150:intergenic | 35.0% | |
| CTAGGTTATTGGATGAAGAT+CGG | + | tig0015510:2163-2182 | Msa1356150:intergenic | 35.0% | |
| AAATTTGTGCATGAACTGCA+TGG | - | tig0015510:2440-2459 | Msa1356150:intron | 35.0% | |
| GATTGACCATAACCTCAATT+TGG | - | tig0015510:2515-2534 | Msa1356150:intron | 35.0% | |
| TAGAACCCAAATTGAGGTTA+TGG | + | tig0015510:2524-2543 | Msa1356150:intergenic | 35.0% | |
| TAGTTGTAGAACCCAAATTG+AGG | + | tig0015510:2530-2549 | Msa1356150:intergenic | 35.0% | |
| AGTTTATTTGTGTGTGTGTG+TGG | - | tig0015510:2550-2569 | Msa1356150:intron | 35.0% | |
| GTTTATTTGTGTGTGTGTGT+GGG | - | tig0015510:2551-2570 | Msa1356150:intron | 35.0% | |
| CGGAAATTATGTACTTGTGT+TGG | - | tig0015510:2657-2676 | Msa1356150:CDS | 35.0% | |
| GTTGGTTGCTATGGTTAATT+TGG | - | tig0015510:2675-2694 | Msa1356150:CDS | 35.0% | |
| ATTTCTTACATGTGTAGCTC+TGG | + | tig0015510:2750-2769 | Msa1356150:intergenic | 35.0% | |
| AGCTACACATGTAAGAAATG+TGG | - | tig0015510:2751-2770 | Msa1356150:CDS | 35.0% | |
| TAAATGATCTGTTAGCAGTG+CGG | + | tig0015510:2818-2837 | Msa1356150:intergenic | 35.0% | |
| !!! | GAAATGTTTTGTTTTCCCTG+TGG | - | tig0015510:2920-2939 | Msa1356150:CDS | 35.0% |
| ! | TTCTTAGCATTTTTGTCACC+TGG | - | tig0015510:2965-2984 | Msa1356150:CDS | 35.0% |
| TGCACTTAATGCAATAAACC+AGG | + | tig0015510:2986-3005 | Msa1356150:intergenic | 35.0% | |
| ACTTCTATGCTGAAATTGAC+AGG | - | tig0015510:3059-3078 | Msa1356150:CDS | 35.0% | |
| ! | TTTTTGGATACAACCAGACA+TGG | - | tig0015510:3278-3297 | Msa1356150:exon | 35.0% |
| ! | GAATCTTCGCTGTTGATTGT+TGG | + | tig0015510:130-149 | None:intergenic | 40.0% |
| ! | TTTCGAGTAAGAGATTCTCG+AGG | + | tig0015510:171-190 | None:intergenic | 40.0% |
| ! | GGAAATCCTCGAAGGATTTT+TGG | + | tig0015510:255-274 | Msa1356150:intergenic | 40.0% |
| ! | TCCTTCGAGGATTTCCTTTT+CGG | - | tig0015510:259-278 | Msa1356150:exon | 40.0% |
| GGGAGAGTAGTATTTGTGTT+GGG | - | tig0015510:446-465 | Msa1356150:intron | 40.0% | |
| ACTCCAACTGGTTGTGAATA+AGG | + | tig0015510:607-626 | Msa1356150:intergenic | 40.0% | |
| TATTCACAACCAGTTGGAGT+TGG | - | tig0015510:607-626 | Msa1356150:intron | 40.0% | |
| AACCAAATTGTTGACCTTGG+AGG | + | tig0015510:748-767 | Msa1356150:intergenic | 40.0% | |
| ! | GGAAGTTGGATTTTCTGTTC+TGG | - | tig0015510:963-982 | Msa1356150:CDS | 40.0% |
| ! | CTGGGTTTAAGATGTTTAGG+TGG | - | tig0015510:982-1001 | Msa1356150:CDS | 40.0% |
| TTTAGGTGGTAGGCACAAAT+AGG | - | tig0015510:996-1015 | Msa1356150:intron | 40.0% | |
| TTAGGTGGTAGGCACAAATA+GGG | - | tig0015510:997-1016 | Msa1356150:intron | 40.0% | |
| TACATCAAATGAGCTTCCCT+AGG | + | tig0015510:1045-1064 | Msa1356150:intergenic | 40.0% | |
| CTCTATCAAATTGGAGCCAT+TGG | + | tig0015510:1156-1175 | Msa1356150:intergenic | 40.0% | |
| AACACAACAACAACAGGGTT+TGG | + | tig0015510:1235-1254 | Msa1356150:intergenic | 40.0% | |
| CCATTGAACACAACAACAAC+AGG | + | tig0015510:1241-1260 | Msa1356150:intergenic | 40.0% | |
| ! | CCTGTTGTTGTTGTGTTCAA+TGG | - | tig0015510:1238-1257 | Msa1356150:intron | 40.0% |
| CTTAAGTAGTTGCGGATCTA+AGG | + | tig0015510:1378-1397 | Msa1356150:intergenic | 40.0% | |
| TCCAAAGTCGTGATTCTTGT+CGG | - | tig0015510:1414-1433 | Msa1356150:intron | 40.0% | |
| TGATTCTTGTCGGAAACCAT+GGG | - | tig0015510:1424-1443 | Msa1356150:intron | 40.0% | |
| TTGATCATAGTCGCTTCAGT+TGG | - | tig0015510:1487-1506 | Msa1356150:intron | 40.0% | |
| TTGGCCATGACCTCAAAATT+TGG | - | tig0015510:1719-1738 | Msa1356150:intron | 40.0% | |
| TGTGGATGAATTTGGCTGTT+AGG | - | tig0015510:1762-1781 | Msa1356150:intron | 40.0% | |
| GAATTTGGCTGTTAGGAAGT+TGG | - | tig0015510:1769-1788 | Msa1356150:intron | 40.0% | |
| GGAAGTTGGATCACATGTTT+AGG | - | tig0015510:1783-1802 | Msa1356150:intron | 40.0% | |
| GGGAGCTATTTGATGAAGAT+TGG | - | tig0015510:1919-1938 | Msa1356150:intron | 40.0% | |
| TTGGATCAAATTGGAACCAC+TGG | + | tig0015510:1972-1991 | Msa1356150:intergenic | 40.0% | |
| TTGATCCAAACTTCATCCGA+CGG | - | tig0015510:1983-2002 | Msa1356150:intron | 40.0% | |
| CACAGCTACTGAAATTGTGA+CGG | - | tig0015510:2191-2210 | Msa1356150:intron | 40.0% | |
| ! | TTGTCGGAAACCATGGATTT+TGG | - | tig0015510:2237-2256 | Msa1356150:intron | 40.0% |
| ATTGAGGTTATGGTCAATCC+TGG | + | tig0015510:2514-2533 | Msa1356150:intergenic | 40.0% | |
| ! | TTTTGAGCTTATGTGTTGCG+TGG | - | tig0015510:2610-2629 | Msa1356150:intron | 40.0% |
| !! | TGTACTTGTGTTGGTTGCTA+TGG | - | tig0015510:2666-2685 | Msa1356150:CDS | 40.0% |
| !!! | ATGTTTTGTTTTCCCTGTGG+TGG | - | tig0015510:2923-2942 | Msa1356150:CDS | 40.0% |
| CTCAAAGGGGATGAAAATGA+TGG | + | tig0015510:3143-3162 | Msa1356150:intergenic | 40.0% | |
| GGGATTTGCACTGTGAAAAT+GGG | + | tig0015510:3182-3201 | Msa1356150:intergenic | 40.0% | |
| TGGGATTTGCACTGTGAAAA+TGG | + | tig0015510:3183-3202 | Msa1356150:intergenic | 40.0% | |
| ! | TTCGCTGTTGATTGTTGGGA+GGG | + | tig0015510:125-144 | None:intergenic | 45.0% |
| GAGTAAGAGATTCTCGAGGT+GGG | + | tig0015510:167-186 | None:intergenic | 45.0% | |
| !! | CCTCGAAGGATTTTTGGGAA+GGG | + | tig0015510:249-268 | Msa1356150:intergenic | 45.0% |
| !! | TCCTCGAAGGATTTTTGGGA+AGG | + | tig0015510:250-269 | Msa1356150:intergenic | 45.0% |
| GTCGTCTTCGTCATCATCAT+CGG | + | tig0015510:287-306 | Msa1356150:intergenic | 45.0% | |
| AAGCTGATTGTCAGTGGAGA+AGG | - | tig0015510:382-401 | Msa1356150:intron | 45.0% | |
| AGCTGATTGTCAGTGGAGAA+GGG | - | tig0015510:383-402 | Msa1356150:intron | 45.0% | |
| GTAACTGCTTCACCGGAATT+CGG | + | tig0015510:421-440 | Msa1356150:intergenic | 45.0% | |
| CGGGAGAGTAGTATTTGTGT+TGG | - | tig0015510:445-464 | Msa1356150:intron | 45.0% | |
| TATGTTGTGTGGGAATGGCA+TGG | - | tig0015510:493-512 | Msa1356150:intron | 45.0% | |
| ATGTTGTGTGGGAATGGCAT+GGG | - | tig0015510:494-513 | Msa1356150:intron | 45.0% | |
| GAATGGCATGGGCATATCAT+GGG | - | tig0015510:505-524 | Msa1356150:intron | 45.0% | |
| AATGGCATGGGCATATCATG+GGG | - | tig0015510:506-525 | Msa1356150:intron | 45.0% | |
| ! | TTTTCAGAGGACTGTGCCTT+CGG | - | tig0015510:576-595 | Msa1356150:intron | 45.0% |
| CGTCCTTATTCACAACCAGT+TGG | - | tig0015510:601-620 | Msa1356150:intron | 45.0% | |
| TCTTCATCTCCAACTCCAAC+TGG | + | tig0015510:619-638 | Msa1356150:intergenic | 45.0% | |
| TGAAGCTGATGTTGTCAGCA+AGG | - | tig0015510:639-658 | Msa1356150:intron | 45.0% | |
| GAAGCTGATGTTGTCAGCAA+GGG | - | tig0015510:640-659 | Msa1356150:intron | 45.0% | |
| TGTTGTCAGCAAGGGTTTGA+AGG | - | tig0015510:648-667 | Msa1356150:intron | 45.0% | |
| CTCCTCCAAGGTCAACAATT+TGG | - | tig0015510:743-762 | Msa1356150:intron | 45.0% | |
| TGGTAGGCACAAATAGGGTT+CGG | - | tig0015510:1002-1021 | Msa1356150:intron | 45.0% | |
| TTGATCCGGTCTTCATCCAA+TGG | - | tig0015510:1137-1156 | Msa1356150:intron | 45.0% | |
| TCCGACAAGAATCACGACTT+TGG | + | tig0015510:1418-1437 | Msa1356150:intergenic | 45.0% | |
| GTGATTCTTGTCGGAAACCA+TGG | - | tig0015510:1423-1442 | Msa1356150:intron | 45.0% | |
| ! | TTGTCGGAAACCATGGGTTT+TGG | - | tig0015510:1430-1449 | Msa1356150:intron | 45.0% |
| CCTGAACTGCATAACTGAGA+GGG | - | tig0015510:1650-1669 | Msa1356150:intron | 45.0% | |
| TCCTTCGCTGTGGATGAATT+TGG | - | tig0015510:1754-1773 | Msa1356150:intron | 45.0% | |
| ATCAACACATCCACTACCGT+CGG | + | tig0015510:2002-2021 | Msa1356150:intergenic | 45.0% | |
| GTGTCGTGGATCTAGGTTAT+TGG | + | tig0015510:2174-2193 | Msa1356150:intergenic | 45.0% | |
| CAATTTCAGTAGCTGTGTCG+TGG | + | tig0015510:2188-2207 | Msa1356150:intergenic | 45.0% | |
| GTGATTCTTGTCGGAAACCA+TGG | - | tig0015510:1423-1442 | Msa1356150:intron | 45.0% | |
| CCAACTGAAGTGACTGTGAT+TGG | + | tig0015510:2296-2315 | Msa1356150:intergenic | 45.0% | |
| CCAATCACAGTCACTTCAGT+TGG | - | tig0015510:2293-2312 | Msa1356150:intron | 45.0% | |
| TATTTGTGTGTGTGTGTGGG+TGG | - | tig0015510:2554-2573 | Msa1356150:intron | 45.0% | |
| ATTTGTGTGTGTGTGTGGGT+GGG | - | tig0015510:2555-2574 | Msa1356150:intron | 45.0% | |
| CCAACACCCTGTTACATCAT+CGG | - | tig0015510:2637-2656 | Msa1356150:intron | 45.0% | |
| AAAGCTCAAATGGGCGATGA+AGG | - | tig0015510:2713-2732 | Msa1356150:CDS | 45.0% | |
| TAAGTTGTCTTGCCACCACA+GGG | + | tig0015510:2938-2957 | Msa1356150:intergenic | 45.0% | |
| GATTGTTGGGAGGGAAGTCA+TGG | + | tig0015510:116-135 | None:intergenic | 50.0% | |
| ! | CTTCGCTGTTGATTGTTGGG+AGG | + | tig0015510:126-145 | None:intergenic | 50.0% |
| TAAGAGATTCTCGAGGTGGG+TGG | + | tig0015510:164-183 | None:intergenic | 50.0% | |
| CGAGTAAGAGATTCTCGAGG+TGG | + | tig0015510:168-187 | None:intergenic | 50.0% | |
| CTGTCGTCATTGACGTTGTC+TGG | + | tig0015510:223-242 | Msa1356150:intergenic | 50.0% | |
| CCCTTCCCAAAAATCCTTCG+AGG | - | tig0015510:246-265 | Msa1356150:exon | 50.0% | |
| GCCGAAAAGGAAATCCTCGA+AGG | + | tig0015510:263-282 | Msa1356150:intergenic | 50.0% | |
| CATCATCATCGGAGCCGAAA+AGG | + | tig0015510:276-295 | Msa1356150:intergenic | 50.0% | |
| GCTGATTGTCAGTGGAGAAG+GGG | - | tig0015510:384-403 | Msa1356150:intron | 50.0% | |
| GATACGCTGAAGCCGAATTC+CGG | - | tig0015510:406-425 | Msa1356150:intron | 50.0% | |
| CCGAATCGTAACTGCTTCAC+CGG | + | tig0015510:428-447 | Msa1356150:intergenic | 50.0% | |
| CCGGTGAAGCAGTTACGATT+CGG | - | tig0015510:425-444 | Msa1356150:intron | 50.0% | |
| CGGTGAAGCAGTTACGATTC+GGG | - | tig0015510:426-445 | Msa1356150:intron | 50.0% | |
| ! | TGTTGGGTGTCATGACGATG+AGG | - | tig0015510:462-481 | Msa1356150:intron | 50.0% |
| ! | GGTGTCATGACGATGAGGAA+GGG | - | tig0015510:467-486 | Msa1356150:intron | 50.0% |
| GTGTCATGACGATGAGGAAG+GGG | - | tig0015510:468-487 | Msa1356150:intron | 50.0% | |
| ! | AGGAAGGGGAGTATGTTGTG+TGG | - | tig0015510:482-501 | Msa1356150:intron | 50.0% |
| ! | GGAAGGGGAGTATGTTGTGT+GGG | - | tig0015510:483-502 | Msa1356150:intron | 50.0% |
| ! | GGGAGTATGTTGTGTGGGAA+TGG | - | tig0015510:488-507 | Msa1356150:intron | 50.0% |
| GGAATGGCATGGGCATATCA+TGG | - | tig0015510:504-523 | Msa1356150:intron | 50.0% | |
| TGTGAATAAGGACGCTCCGA+AGG | + | tig0015510:595-614 | Msa1356150:intergenic | 50.0% | |
| ATACTGATGCTGCTCCTGCT+AGG | - | tig0015510:689-708 | Msa1356150:intron | 50.0% | |
| CTGCGATGAAGAATCCTAGC+AGG | + | tig0015510:706-725 | Msa1356150:intergenic | 50.0% | |
| CTTCATCGCAGTCTCAATGC+TGG | - | tig0015510:715-734 | Msa1356150:intron | 50.0% | |
| AAATAGGGTTCGGAACACCC+TGG | - | tig0015510:1012-1031 | Msa1356150:intron | 50.0% | |
| AACACCCTGGTTGTGATCCT+AGG | - | tig0015510:1025-1044 | Msa1356150:intron | 50.0% | |
| ACACCCTGGTTGTGATCCTA+GGG | - | tig0015510:1026-1045 | Msa1356150:intron | 50.0% | |
| CTTCCCTAGGATCACAACCA+GGG | + | tig0015510:1032-1051 | Msa1356150:intergenic | 50.0% | |
| TGGAGCCATTGGATGAAGAC+CGG | + | tig0015510:1145-1164 | Msa1356150:intergenic | 50.0% | |
| GCCTGAACTGCATAACTGAG+AGG | - | tig0015510:1649-1668 | Msa1356150:intron | 50.0% | |
| CCCTCTCAGTTATGCAGTTC+AGG | + | tig0015510:1653-1672 | Msa1356150:intergenic | 50.0% | |
| CTAGCAACTTTCCTTCGCTG+TGG | - | tig0015510:1744-1763 | Msa1356150:intron | 50.0% | |
| GCCAAATTCATCCACAGCGA+AGG | + | tig0015510:1758-1777 | Msa1356150:intergenic | 50.0% | |
| CCGAGATCACAACCTGGTTT+GGG | + | tig0015510:1846-1865 | Msa1356150:intergenic | 50.0% | |
| CCCAAACCAGGTTGTGATCT+CGG | - | tig0015510:1843-1862 | Msa1356150:intron | 50.0% | |
| CCAAACCAGGTTGTGATCTC+GGG | - | tig0015510:1844-1863 | Msa1356150:intron | 50.0% | |
| CAAACCAGGTTGTGATCTCG+GGG | - | tig0015510:1845-1864 | Msa1356150:intron | 50.0% | |
| TTGATCCGATCGTCATCCAG+TGG | - | tig0015510:1953-1972 | Msa1356150:intron | 50.0% | |
| TGGAACCACTGGATGACGAT+CGG | + | tig0015510:1961-1980 | Msa1356150:intergenic | 50.0% | |
| CACTACCGTCGGATGAAGTT+TGG | + | tig0015510:1991-2010 | Msa1356150:intergenic | 50.0% | |
| CAAACTTCATCCGACGGTAG+TGG | - | tig0015510:1989-2008 | Msa1356150:intron | 50.0% | |
| AGTAGCTGTGTCGTGGATCT+AGG | + | tig0015510:2181-2200 | Msa1356150:intergenic | 50.0% | |
| !! | AATTGGGAGAGCATCCCTCT+CGG | + | tig0015510:2466-2485 | Msa1356150:intergenic | 50.0% |
| GGCTGACGTTGAAGGCAATT+GGG | + | tig0015510:2482-2501 | Msa1356150:intergenic | 50.0% | |
| TGGCTGACGTTGAAGGCAAT+TGG | + | tig0015510:2483-2502 | Msa1356150:intergenic | 50.0% | |
| AGACAACTGGCTGACGTTGA+AGG | + | tig0015510:2490-2509 | Msa1356150:intergenic | 50.0% | |
| GGTCAATCCTGGTAGACAAC+TGG | + | tig0015510:2503-2522 | Msa1356150:intergenic | 50.0% | |
| CCGATGATGTAACAGGGTGT+TGG | + | tig0015510:2640-2659 | Msa1356150:intergenic | 50.0% | |
| CTAAGTTGTCTTGCCACCAC+AGG | + | tig0015510:2939-2958 | Msa1356150:intergenic | 50.0% | |
| !! | GTTTGATGGGTTGCAAGCAG+AGG | - | tig0015510:3111-3130 | Msa1356150:CDS | 50.0% |
| ATTCTCGAGGTGGGTGGTTG+TGG | + | tig0015510:158-177 | None:intergenic | 55.0% | |
| GCGAAGAGTCGAGAGTCGAA+GGG | - | tig0015510:350-369 | Msa1356150:intron | 55.0% | |
| CGAAGAGTCGAGAGTCGAAG+GGG | - | tig0015510:351-370 | Msa1356150:intron | 55.0% | |
| ! | GGGTGTCATGACGATGAGGA+AGG | - | tig0015510:466-485 | Msa1356150:intron | 55.0% |
| !! | ATGCTGGTTCTGCTCCTCCA+AGG | - | tig0015510:731-750 | Msa1356150:intron | 55.0% |
| GCTTCCCTAGGATCACAACC+AGG | + | tig0015510:1033-1052 | Msa1356150:intergenic | 55.0% | |
| ! | TTTGAGGTCATGGCCAACCC+CGG | + | tig0015510:1716-1735 | Msa1356150:intergenic | 55.0% |
| !! | ACAACCTGGTTTGGGCGTTC+GGG | + | tig0015510:1838-1857 | Msa1356150:intergenic | 55.0% |
| !! | CACAACCTGGTTTGGGCGTT+CGG | + | tig0015510:1839-1858 | Msa1356150:intergenic | 55.0% |
| CCCGAGATCACAACCTGGTT+TGG | + | tig0015510:1847-1866 | Msa1356150:intergenic | 55.0% | |
| CATGAACTGCATGGCCGAGA+GGG | - | tig0015510:2449-2468 | Msa1356150:intron | 55.0% | |
| ACGTCAGCCAGTTGTCTACC+AGG | - | tig0015510:2493-2512 | Msa1356150:intron | 55.0% | |
| CCGACCTCCTGGTAAGTACG+GGG | + | tig0015510:313-332 | Msa1356150:intergenic | 60.0% | |
| CCCCGTACTTACCAGGAGGT+CGG | - | tig0015510:310-329 | Msa1356150:intron | 60.0% | |
| CCCGACCTCCTGGTAAGTAC+GGG | + | tig0015510:314-333 | Msa1356150:intergenic | 60.0% | |
| CCCGTACTTACCAGGAGGTC+GGG | - | tig0015510:311-330 | Msa1356150:intron | 60.0% | |
| GCCCGACCTCCTGGTAAGTA+CGG | + | tig0015510:315-334 | Msa1356150:intergenic | 60.0% | |
| TTGCTTTCTGCCCGACCTCC+TGG | + | tig0015510:324-343 | Msa1356150:intergenic | 60.0% | |
| CGCGAAGAGTCGAGAGTCGA+AGG | - | tig0015510:349-368 | Msa1356150:intron | 60.0% | |
| GGCTCGCGTGGAAGGTCATT+GGG | + | tig0015510:1683-1702 | Msa1356150:intergenic | 60.0% | |
| TGGCTCGCGTGGAAGGTCAT+TGG | + | tig0015510:1684-1703 | Msa1356150:intergenic | 60.0% | |
| AATGACCTTCCACGCGAGCC+AGG | - | tig0015510:1683-1702 | Msa1356150:intron | 60.0% | |
| ! | ACGCGAGCCAGGTTAGCTAC+CGG | - | tig0015510:1694-1713 | Msa1356150:intron | 60.0% |
| GATTCCCGAACGCCCAAACC+AGG | - | tig0015510:1831-1850 | Msa1356150:intron | 60.0% | |
| GGTTCCCCGAGATCACAACC+TGG | + | tig0015510:1852-1871 | Msa1356150:intergenic | 60.0% | |
| GCATGAACTGCATGGCCGAG+AGG | - | tig0015510:2448-2467 | Msa1356150:intron | 60.0% | |
| TGTGTGTGTGTGTGGGTGGG+CGG | - | tig0015510:2558-2577 | Msa1356150:intron | 60.0% | |
| CTCGAGGTGGGTGGTTGTGG+AGG | + | tig0015510:155-174 | None:intergenic | 65.0% | |
| CGACGCTCCCCGTACTTACC+AGG | - | tig0015510:303-322 | Msa1356150:intron | 65.0% | |
| CGCTCCCCGTACTTACCAGG+AGG | - | tig0015510:306-325 | Msa1356150:intron | 65.0% | |
| ! | GCTAACCTGGCTCGCGTGGA+AGG | + | tig0015510:1691-1710 | Msa1356150:intergenic | 65.0% |
| ! | GGTAGCTAACCTGGCTCGCG+TGG | + | tig0015510:1695-1714 | Msa1356150:intergenic | 65.0% |
| ! | CGCGAGCCAGGTTAGCTACC+GGG | - | tig0015510:1695-1714 | Msa1356150:intron | 65.0% |
| ! | GCGAGCCAGGTTAGCTACCG+GGG | - | tig0015510:1696-1715 | Msa1356150:intron | 65.0% |
| ! | GCCAGGTTAGCTACCGGGGT+TGG | - | tig0015510:1700-1719 | Msa1356150:intron | 65.0% |
| GCCAACCCCGGTAGCTAACC+TGG | + | tig0015510:1704-1723 | Msa1356150:intergenic | 65.0% | |
| GTGTGTGTGTGTGGGTGGGC+GGG | - | tig0015510:2559-2578 | Msa1356150:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015510 | gene | 43 | 3359 | 43 | ID=Msa1356150;Name=Msa1356150 |
| tig0015510 | mRNA | 43 | 3359 | 43 | ID=Msa1356150-mRNA-1;Parent=Msa1356150;Name=Msa1356150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|0|0.66|0.66|1|1|3|220|287 |
| tig0015510 | exon | 43 | 321 | 43 | ID=Msa1356150-mRNA-1:exon:9770;Parent=Msa1356150-mRNA-1 |
| tig0015510 | exon | 838 | 1004 | 838 | ID=Msa1356150-mRNA-1:exon:9769;Parent=Msa1356150-mRNA-1 |
| tig0015510 | exon | 2650 | 3359 | 2650 | ID=Msa1356150-mRNA-1:exon:9768;Parent=Msa1356150-mRNA-1 |
| tig0015510 | five_prime_UTR | 3288 | 3359 | 3288 | ID=Msa1356150-mRNA-1:five_prime_utr;Parent=Msa1356150-mRNA-1 |
| tig0015510 | CDS | 2650 | 3287 | 2650 | ID=Msa1356150-mRNA-1:cds;Parent=Msa1356150-mRNA-1 |
| tig0015510 | CDS | 838 | 1004 | 838 | ID=Msa1356150-mRNA-1:cds;Parent=Msa1356150-mRNA-1 |
| tig0015510 | CDS | 263 | 321 | 263 | ID=Msa1356150-mRNA-1:cds;Parent=Msa1356150-mRNA-1 |
| tig0015510 | three_prime_UTR | 43 | 262 | 43 | ID=Msa1356150-mRNA-1:three_prime_utr;Parent=Msa1356150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
