Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409220 | XP_003625511.1 | 86.996 | 223 | 21 | 4 | 1 | 218 | 1 | 220 | 2.82e-116 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409220 | G7L0L4 | 86.996 | 223 | 21 | 4 | 1 | 218 | 1 | 220 | 1.35e-116 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1356150 | Msa1409220 | 0.866545 | 2.635941e-65 | -8.615850e-47 |
| Msa1385750 | Msa1409220 | 0.997423 | 2.852008e-242 | -8.615850e-47 |
| Msa1409220 | Msa1434120 | 0.992361 | 7.830269e-193 | -8.615850e-47 |
| Msa0648620 | Msa1409220 | 0.824523 | 7.709699e-54 | -8.615850e-47 |
| Msa0648670 | Msa1409220 | 0.832631 | 8.466566e-56 | -8.615850e-47 |
| Msa1123800 | Msa1409220 | 0.909142 | 7.892115e-82 | -8.615850e-47 |
| Msa1169940 | Msa1409220 | 0.998767 | 7.453023e-276 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409220 | MtrunA17_Chr7g0263051 | 86.996 | 223 | 21 | 4 | 1 | 218 | 1 | 220 | 2.59e-120 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409220 | AT3G53630.2 | 42.857 | 245 | 115 | 8 | 12 | 253 | 3 | 225 | 3.00e-48 | 160 |
| Msa1409220 | AT3G53630.1 | 46.569 | 204 | 94 | 6 | 12 | 214 | 3 | 192 | 3.36e-47 | 157 |
Find 96 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATGCAATCTTAATTT+TGG | 0.074580 | tig0023498:-7902 | None:intergenic |
| GATTGACCATAACCTCAATT+TGG | 0.202384 | tig0023498:+7217 | Msa1409220:CDS |
| TGGGATTTGCACTGTGAAAA+TGG | 0.222632 | tig0023498:-7882 | None:intergenic |
| ACTCCAACTGGTTGTGAATA+AGG | 0.268058 | tig0023498:-5290 | None:intergenic |
| GAATCTTCGTTGTTGATGTT+TGG | 0.305644 | tig0023498:-4813 | None:intergenic |
| AACAATGGACCAGTATAAAA+AGG | 0.309171 | tig0023498:-8048 | None:intergenic |
| CATTGAAATTTCAAGTTTGA+TGG | 0.324699 | tig0023498:+7799 | Msa1409220:CDS |
| AATCTTCGTTGTTGATGTTT+GGG | 0.328350 | tig0023498:-4812 | None:intergenic |
| GTAACTGCTTCACCGGAATT+CGG | 0.343202 | tig0023498:-5104 | None:intergenic |
| CTGTCGTCATTGACGTTGTC+TGG | 0.355101 | tig0023498:-4906 | None:intergenic |
| TAGAACCCAAATTGAGGTTA+TGG | 0.365006 | tig0023498:-7223 | None:intergenic |
| TGTGAATTGTGAAATGGAAA+TGG | 0.366177 | tig0023498:-4730 | None:intergenic |
| TGGCTGACGTTGAAGGCAAT+TGG | 0.369030 | tig0023498:-7182 | None:intergenic |
| CGGTGAAGCAGTTACGATTC+GGG | 0.372928 | tig0023498:+5112 | Msa1409220:CDS |
| ATTGACCATAACCTCAATTT+GGG | 0.373255 | tig0023498:+7218 | Msa1409220:CDS |
| ATTCTCGAGGTGGGTGGTTG+TGG | 0.374448 | tig0023498:-4841 | None:intergenic |
| GATACGCTGAAGCCGAATTC+CGG | 0.405492 | tig0023498:+5092 | Msa1409220:CDS |
| AATAACTCATTATCTTTGCT+TGG | 0.411400 | tig0023498:+8009 | Msa1409220:three_prime_UTR |
| CCGGTGAAGCAGTTACGATT+CGG | 0.415694 | tig0023498:+5111 | Msa1409220:CDS |
| TACTCGAAACCTTGATGAAA+AGG | 0.423065 | tig0023498:+4868 | Msa1409220:CDS |
| GTGAATTGTGAAATGGAAAT+GGG | 0.424607 | tig0023498:-4729 | None:intergenic |
| AATAATCTTTGCTTCTCAAA+GGG | 0.425067 | tig0023498:-7856 | None:intergenic |
| TCTTCATCTCCAACTCCAAC+TGG | 0.432362 | tig0023498:-5302 | None:intergenic |
| TTTCGCCTGAGTATATTTAT+GGG | 0.433268 | tig0023498:+5234 | Msa1409220:CDS |
| GGAATGGCATGGGCATATCA+TGG | 0.438655 | tig0023498:+5190 | Msa1409220:CDS |
| GGCTGACGTTGAAGGCAATT+GGG | 0.439791 | tig0023498:-7181 | None:intergenic |
| CTTTAAAATCATACTTGTAA+AGG | 0.444260 | tig0023498:+7937 | Msa1409220:three_prime_UTR |
| TTGCTTTCTGCCCGACCTCC+TGG | 0.447681 | tig0023498:-5007 | None:intergenic |
| GTGAAATGAAAGAGATATGC+AGG | 0.447964 | tig0023498:-4757 | None:intergenic |
| GCCCGACCTCCTGGTAAGTA+CGG | 0.449996 | tig0023498:-4998 | None:intergenic |
| AAGCTGATTGTCAGTGGAGA+AGG | 0.455681 | tig0023498:+5068 | Msa1409220:CDS |
| CATCATCATCGGAGCCGAAA+AGG | 0.460905 | tig0023498:-4959 | None:intergenic |
| CCCGTACTTACCAGGAGGTC+GGG | 0.461045 | tig0023498:+4997 | Msa1409220:CDS |
| GGGAGTATGTTGTGTGGGAA+TGG | 0.467402 | tig0023498:+5174 | Msa1409220:CDS |
| TGTTGTCAGCAAGGGTTTGA+AGG | 0.470639 | tig0023498:+5346 | Msa1409220:CDS |
| CGGGAGAGTAGTATTTGTGT+TGG | 0.470805 | tig0023498:+5131 | Msa1409220:CDS |
| GAATGGCATGGGCATATCAT+GGG | 0.474822 | tig0023498:+5191 | Msa1409220:CDS |
| CGCGAAGAGTCGAGAGTCGA+AGG | 0.475861 | tig0023498:+5035 | Msa1409220:CDS |
| GGGAGAGTAGTATTTGTGTT+GGG | 0.478013 | tig0023498:+5132 | Msa1409220:CDS |
| GGGATTTGCACTGTGAAAAT+GGG | 0.479435 | tig0023498:-7881 | None:intergenic |
| ATGGGGTATAATGATGATCA+TGG | 0.480640 | tig0023498:+5209 | Msa1409220:CDS |
| GGTCAATCCTGGTAGACAAC+TGG | 0.486687 | tig0023498:-7202 | None:intergenic |
| AAATAATCTTTGCTTCTCAA+AGG | 0.489359 | tig0023498:-7857 | None:intergenic |
| AGACAACTGGCTGACGTTGA+AGG | 0.491469 | tig0023498:-7189 | None:intergenic |
| ACGTCAGCCAGTTGTCTACC+AGG | 0.493612 | tig0023498:+7195 | Msa1409220:CDS |
| ATTGAAATTTCAAGTTTGAT+GGG | 0.493745 | tig0023498:+7800 | Msa1409220:CDS |
| TATTCACAACCAGTTGGAGT+TGG | 0.500442 | tig0023498:+5293 | Msa1409220:CDS |
| CGACGCTCCCCGTACTTACC+AGG | 0.500920 | tig0023498:+4989 | Msa1409220:CDS |
| ATACTGATGCTGCTCCTGCT+AGG | 0.512955 | tig0023498:+5387 | Msa1409220:CDS |
| AACCAAATTGTTGACCTTGG+AGG | 0.515992 | tig0023498:-5443 | None:intergenic |
| CTTCATCGCAGTCTCAATGC+TGG | 0.528653 | tig0023498:+5413 | Msa1409220:CDS |
| CTGCGATGAAGAATCCTAGC+AGG | 0.528957 | tig0023498:-5401 | None:intergenic |
| GATGTTTGGGAGGGAAGTCA+TGG | 0.529266 | tig0023498:-4799 | None:intergenic |
| CCCCGTACTTACCAGGAGGT+CGG | 0.536020 | tig0023498:+4996 | Msa1409220:CDS |
| AGCTGATTGTCAGTGGAGAA+GGG | 0.540667 | tig0023498:+5069 | Msa1409220:CDS |
| CCGAATCGTAACTGCTTCAC+CGG | 0.541881 | tig0023498:-5111 | None:intergenic |
| ATTGAGGTTATGGTCAATCC+TGG | 0.543767 | tig0023498:-7213 | None:intergenic |
| ATGCTGGTTCTGCTCCTCCA+AGG | 0.545858 | tig0023498:+5429 | Msa1409220:CDS |
| CTTCGTTGTTGATGTTTGGG+AGG | 0.546139 | tig0023498:-4809 | None:intergenic |
| CTCAAAGGGGATGAAAATGA+TGG | 0.547136 | tig0023498:-7842 | None:intergenic |
| GTCGTCTTCGTCATCATCAT+CGG | 0.554571 | tig0023498:-4970 | None:intergenic |
| TAGTTGTAGAACCCAAATTG+AGG | 0.555399 | tig0023498:-7229 | None:intergenic |
| CTCGAGGTGGGTGGTTGTGG+AGG | 0.556596 | tig0023498:-4838 | None:intergenic |
| TATGTTGTGTGGGAATGGCA+TGG | 0.562974 | tig0023498:+5179 | Msa1409220:CDS |
| GGAAGGGGAGTATGTTGTGT+GGG | 0.567393 | tig0023498:+5169 | Msa1409220:CDS |
| GTGTCATGACGATGAGGAAG+GGG | 0.570208 | tig0023498:+5154 | Msa1409220:CDS |
| TTCGTTGTTGATGTTTGGGA+GGG | 0.579691 | tig0023498:-4808 | None:intergenic |
| AATTGGGAGAGCATCCCTCT+CGG | 0.583194 | tig0023498:-7165 | None:intergenic |
| CGTCCTTATTCACAACCAGT+TGG | 0.586989 | tig0023498:+5287 | Msa1409220:CDS |
| TGTGAATAAGGACGCTCCGA+AGG | 0.588363 | tig0023498:-5278 | None:intergenic |
| GCGAAGAGTCGAGAGTCGAA+GGG | 0.589719 | tig0023498:+5036 | Msa1409220:CDS |
| CGAGTAAGAGATTCTCGAGG+TGG | 0.590939 | tig0023498:-4851 | None:intergenic |
| GGGTGTCATGACGATGAGGA+AGG | 0.592367 | tig0023498:+5152 | Msa1409220:CDS |
| GTTTGATGGGTTGCAAGCAG+AGG | 0.599701 | tig0023498:+7813 | Msa1409220:CDS |
| TGGGGTATAATGATGATCAT+GGG | 0.601518 | tig0023498:+5210 | Msa1409220:CDS |
| CATGAACTGCATGGCCGAGA+GGG | 0.603779 | tig0023498:+7151 | Msa1409220:CDS |
| GCTGATTGTCAGTGGAGAAG+GGG | 0.605349 | tig0023498:+5070 | Msa1409220:CDS |
| TAATTCCCATAAATATACTC+AGG | 0.608602 | tig0023498:-5239 | None:intergenic |
| ATTATCAAGCTGATTGTCAG+TGG | 0.609061 | tig0023498:+5062 | Msa1409220:CDS |
| ATAATCTTTGCTTCTCAAAG+GGG | 0.611929 | tig0023498:-7855 | None:intergenic |
| ATGTTGTGTGGGAATGGCAT+GGG | 0.613843 | tig0023498:+5180 | Msa1409220:CDS |
| GGTGTCATGACGATGAGGAA+GGG | 0.614911 | tig0023498:+5153 | Msa1409220:CDS |
| AATGGCATGGGCATATCATG+GGG | 0.631702 | tig0023498:+5192 | Msa1409220:CDS |
| AGGAAGGGGAGTATGTTGTG+TGG | 0.641212 | tig0023498:+5168 | Msa1409220:CDS |
| GCCGAAAAGGAAATCCTCGA+AGG | 0.646398 | tig0023498:-4946 | None:intergenic |
| CGAAGAGTCGAGAGTCGAAG+GGG | 0.646968 | tig0023498:+5037 | Msa1409220:CDS |
| TGAAGCTGATGTTGTCAGCA+AGG | 0.660229 | tig0023498:+5337 | Msa1409220:CDS |
| TAAGAGATTCTCGAGGTGGG+TGG | 0.661338 | tig0023498:-4847 | None:intergenic |
| GAGTAAGAGATTCTCGAGGT+GGG | 0.663187 | tig0023498:-4850 | None:intergenic |
| GAAGCTGATGTTGTCAGCAA+GGG | 0.664378 | tig0023498:+5338 | Msa1409220:CDS |
| AAATTTGTGCATGAACTGCA+TGG | 0.671265 | tig0023498:+7142 | Msa1409220:CDS |
| TGAAATGAAAGAGATATGCA+GGG | 0.672780 | tig0023498:-4756 | None:intergenic |
| CGCTCCCCGTACTTACCAGG+AGG | 0.697086 | tig0023498:+4992 | Msa1409220:CDS |
| TGTTGGGTGTCATGACGATG+AGG | 0.711770 | tig0023498:+5148 | Msa1409220:CDS |
| GCATGAACTGCATGGCCGAG+AGG | 0.734910 | tig0023498:+7150 | Msa1409220:CDS |
| TTTCGAGTAAGAGATTCTCG+AGG | 0.744371 | tig0023498:-4854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTTTATTCCTT+TGG | + | tig0023498:5481-5500 | Msa1409220:intron | 10.0% |
| !!! | TTATGGTTTAAAATACAATT+TGG | + | tig0023498:6025-6044 | Msa1409220:intron | 15.0% |
| !!! | TATGGTTTAAAATACAATTT+GGG | + | tig0023498:6026-6045 | Msa1409220:intron | 15.0% |
| !!! | TTTTGGTAATTTAATGAATT+CGG | + | tig0023498:6150-6169 | Msa1409220:intron | 15.0% |
| !!! | AGTATTTTAAACCATATTTA+GGG | - | tig0023498:6825-6844 | None:intergenic | 15.0% |
| !!! | TAGTATTTTAAACCATATTT+AGG | - | tig0023498:6826-6845 | None:intergenic | 15.0% |
| !!! | AATATGGTTTAAAATACTAT+TGG | + | tig0023498:6827-6846 | Msa1409220:intron | 15.0% |
| !! | TAAGGTTGTTAAATGAATAT+CGG | - | tig0023498:6063-6082 | None:intergenic | 20.0% |
| !! | AATCACTCTAGTTATTAAAT+GGG | + | tig0023498:6601-6620 | Msa1409220:intron | 20.0% |
| !!! | TAATTTAACTTCCCTAAATA+TGG | + | tig0023498:6811-6830 | Msa1409220:intron | 20.0% |
| !!! | TTTTGGTAATTTAACGAATT+CGG | + | tig0023498:6956-6975 | Msa1409220:intron | 20.0% |
| !!! | TGAGCTTTAATTAAACAAAA+AGG | - | tig0023498:7403-7422 | None:intergenic | 20.0% |
| !! | TTGTTTAATTAAAGCTCAAA+TGG | + | tig0023498:7405-7424 | Msa1409220:intron | 20.0% |
| !! | TGTTTAATTAAAGCTCAAAT+GGG | + | tig0023498:7406-7425 | Msa1409220:intron | 20.0% |
| !!! | TAAAAGCACAAAAAGATTAT+AGG | - | tig0023498:7580-7599 | None:intergenic | 20.0% |
| !!! | ATCTTTTATGTTTTGATGTT+TGG | + | tig0023498:7726-7745 | Msa1409220:intron | 20.0% |
| !!! | ATTGAAATTTCAAGTTTGAT+GGG | + | tig0023498:7800-7819 | Msa1409220:CDS | 20.0% |
| !!! | CTTTAAAATCATACTTGTAA+AGG | + | tig0023498:7937-7956 | Msa1409220:three_prime_UTR | 20.0% |
| !!! | GAGACATGATTTTTTATTTT+TGG | + | tig0023498:7964-7983 | Msa1409220:three_prime_UTR | 20.0% |
| ! | TAATTCCCATAAATATACTC+AGG | - | tig0023498:5242-5261 | None:intergenic | 25.0% |
| !! | TTTATGGGAATTATTTTCAG+AGG | + | tig0023498:5249-5268 | Msa1409220:CDS | 25.0% |
| ! | ACAACAAAAAATCAAACCAA+AGG | - | tig0023498:5500-5519 | None:intergenic | 25.0% |
| !! | GTGAATTTTGTTAGATTGTT+TGG | + | tig0023498:5529-5548 | Msa1409220:intron | 25.0% |
| !! | AATTTTGTTAGATTGTTTGG+TGG | + | tig0023498:5532-5551 | Msa1409220:intron | 25.0% |
| !! | ATTTTGTTAGATTGTTTGGT+GGG | + | tig0023498:5533-5552 | Msa1409220:intron | 25.0% |
| !! | TGGATTTAAAGTTATTGATC+CGG | + | tig0023498:5826-5845 | Msa1409220:intron | 25.0% |
| !!! | TATTTTAACTTCTCCAAATG+TGG | + | tig0023498:6001-6020 | Msa1409220:intron | 25.0% |
| ! | TTTAAACCATAAACCACATT+TGG | - | tig0023498:6017-6036 | None:intergenic | 25.0% |
| ! | ATTCAAAACACAATCTTGAT+AGG | - | tig0023498:6235-6254 | None:intergenic | 25.0% |
| ! | AATTAGCAAATTGAAACCAT+TGG | - | tig0023498:6298-6317 | None:intergenic | 25.0% |
| ! | CTAAAATGATAGGTACAATT+GGG | + | tig0023498:6511-6530 | Msa1409220:intron | 25.0% |
| !! | TTTGTTATCTACATCAAATG+AGG | - | tig0023498:6575-6594 | None:intergenic | 25.0% |
| ! | CAATCACTCTAGTTATTAAA+TGG | + | tig0023498:6600-6619 | Msa1409220:intron | 25.0% |
| !!! | GGATGTGTTGATTTTTATTA+TGG | + | tig0023498:6712-6731 | Msa1409220:intron | 25.0% |
| ! | TCTAAAAATGTGATTCTTGT+CGG | + | tig0023498:6923-6942 | Msa1409220:intron | 25.0% |
| ! | ACATAAAAGATTCATTTCAG+TGG | - | tig0023498:7717-7736 | None:intergenic | 25.0% |
| !!! | CATTGAAATTTCAAGTTTGA+TGG | + | tig0023498:7799-7818 | Msa1409220:CDS | 25.0% |
| ! | AATAATCTTTGCTTCTCAAA+GGG | - | tig0023498:7859-7878 | None:intergenic | 25.0% |
| ! | AAATAATCTTTGCTTCTCAA+AGG | - | tig0023498:7860-7879 | None:intergenic | 25.0% |
| !! | ACAGATGCAATCTTAATTTT+GGG | - | tig0023498:7904-7923 | None:intergenic | 25.0% |
| !! | AACAGATGCAATCTTAATTT+TGG | - | tig0023498:7905-7924 | None:intergenic | 25.0% |
| ! | AGTTATTAAAAAACCATGTC+TGG | - | tig0023498:7996-8015 | None:intergenic | 25.0% |
| ! | AATAACTCATTATCTTTGCT+TGG | + | tig0023498:8009-8028 | Msa1409220:three_prime_UTR | 25.0% |
| GTGAATTGTGAAATGGAAAT+GGG | - | tig0023498:4732-4751 | None:intergenic | 30.0% | |
| TGTGAATTGTGAAATGGAAA+TGG | - | tig0023498:4733-4752 | None:intergenic | 30.0% | |
| TGAAATGAAAGAGATATGCA+GGG | - | tig0023498:4759-4778 | None:intergenic | 30.0% | |
| AATCTTCGTTGTTGATGTTT+GGG | - | tig0023498:4815-4834 | None:intergenic | 30.0% | |
| ! | AAGTTGAATCCTTTTCATCA+AGG | - | tig0023498:4880-4899 | None:intergenic | 30.0% |
| ! | TTTTCGCCTGAGTATATTTA+TGG | + | tig0023498:5233-5252 | Msa1409220:CDS | 30.0% |
| TTTCGCCTGAGTATATTTAT+GGG | + | tig0023498:5234-5253 | Msa1409220:CDS | 30.0% | |
| AAAAACCAAATTGTTGACCT+TGG | - | tig0023498:5449-5468 | None:intergenic | 30.0% | |
| TGTAGATGAATTTAGCTGTT+AGG | + | tig0023498:5644-5663 | Msa1409220:intron | 30.0% | |
| TTGAGCTATTAGATGAAGAT+TGG | + | tig0023498:5806-5825 | Msa1409220:intron | 30.0% | |
| CATTAAATTACCAAAACCCA+TGG | - | tig0023498:6146-6165 | None:intergenic | 30.0% | |
| !! | TCAAGATTGTGTTTTGAATC+TGG | + | tig0023498:6236-6255 | Msa1409220:intron | 30.0% |
| ! | GTTTAGGATGCTAAAATGAT+AGG | + | tig0023498:6501-6520 | Msa1409220:intron | 30.0% |
| GCTAAAATGATAGGTACAAT+TGG | + | tig0023498:6510-6529 | Msa1409220:intron | 30.0% | |
| AACACAATAACAACATGGTT+TGG | - | tig0023498:6752-6771 | None:intergenic | 30.0% | |
| CATTGAACACAATAACAACA+TGG | - | tig0023498:6757-6776 | None:intergenic | 30.0% | |
| ! | CATGTTGTTATTGTGTTCAA+TGG | + | tig0023498:6755-6774 | Msa1409220:intron | 30.0% |
| CGTTAAATTACCAAAATCCA+TGG | - | tig0023498:6952-6971 | None:intergenic | 30.0% | |
| AATCTTGATATGTGAGACAT+AGG | - | tig0023498:7029-7048 | None:intergenic | 30.0% | |
| !! | TCAAGATTGTGTTTTGAATC+TGG | + | tig0023498:6236-6255 | Msa1409220:intron | 30.0% |
| ATTGACCATAACCTCAATTT+GGG | + | tig0023498:7218-7237 | Msa1409220:CDS | 30.0% | |
| TAATTTCCGATGATGTAACA+GGG | - | tig0023498:7348-7367 | None:intergenic | 30.0% | |
| ATAATTTCCGATGATGTAAC+AGG | - | tig0023498:7349-7368 | None:intergenic | 30.0% | |
| ATAATCTTTGCTTCTCAAAG+GGG | - | tig0023498:7858-7877 | None:intergenic | 30.0% | |
| !! | GGGTTTTGTGAATTGTGAAA+TGG | - | tig0023498:4739-4758 | None:intergenic | 35.0% |
| GTGAAATGAAAGAGATATGC+AGG | - | tig0023498:4760-4779 | None:intergenic | 35.0% | |
| GAATCTTCGTTGTTGATGTT+TGG | - | tig0023498:4816-4835 | None:intergenic | 35.0% | |
| TACTCGAAACCTTGATGAAA+AGG | + | tig0023498:4868-4887 | Msa1409220:CDS | 35.0% | |
| ! | GAAATCCTCGAAGGATTTTT+GGG | - | tig0023498:4940-4959 | None:intergenic | 35.0% |
| ATTATCAAGCTGATTGTCAG+TGG | + | tig0023498:5062-5081 | Msa1409220:CDS | 35.0% | |
| ATGGGGTATAATGATGATCA+TGG | + | tig0023498:5209-5228 | Msa1409220:CDS | 35.0% | |
| TGGGGTATAATGATGATCAT+GGG | + | tig0023498:5210-5229 | Msa1409220:CDS | 35.0% | |
| GAATTTAGCTGTTAGGAAGT+TGG | + | tig0023498:5651-5670 | Msa1409220:intron | 35.0% | |
| ! | GAAGTTGGATTTTCTGTTCT+GGG | + | tig0023498:5666-5685 | Msa1409220:intron | 35.0% |
| ! | GTTCTGGGTTTAAGATGTTT+AGG | + | tig0023498:5681-5700 | Msa1409220:intron | 35.0% |
| ! | GTTTAAGATGTTTAGGTGGT+AGG | + | tig0023498:5688-5707 | Msa1409220:intron | 35.0% |
| GTAGATAATAAATGACGACG+CGG | + | tig0023498:5765-5784 | Msa1409220:intron | 35.0% | |
| CCATGAAGTCTCTATCAAAT+TGG | - | tig0023498:5868-5887 | None:intergenic | 35.0% | |
| CCAATTTGATAGAGACTTCA+TGG | + | tig0023498:5865-5884 | Msa1409220:intron | 35.0% | |
| TTGATAGAGACTTCATGGAA+CGG | + | tig0023498:5870-5889 | Msa1409220:intron | 35.0% | |
| CATTGAACACAACAACAACA+GGG | - | tig0023498:5943-5962 | None:intergenic | 35.0% | |
| !! | GTTCAATGGATTGATGTTGT+TGG | + | tig0023498:5955-5974 | Msa1409220:intron | 35.0% |
| ACTTCTCCAAATGTGGTTTA+TGG | + | tig0023498:6008-6027 | Msa1409220:intron | 35.0% | |
| AGTCACAACTTAAGTAGTTG+CGG | - | tig0023498:6089-6108 | None:intergenic | 35.0% | |
| TTGAATCTGGTTGCTGATAT+TGG | + | tig0023498:6249-6268 | Msa1409220:intron | 35.0% | |
| GTCAATATGTCTTCATCCAA+TGG | + | tig0023498:6279-6298 | Msa1409220:intron | 35.0% | |
| !!! | AGAACCAAATTTTGAGGTCA+TGG | - | tig0023498:6428-6447 | None:intergenic | 35.0% |
| ! | GTTGCTAGAACCAAATTTTG+AGG | - | tig0023498:6434-6453 | None:intergenic | 35.0% |
| GGATGAAGTTTGGATCAAAT+TGG | - | tig0023498:6683-6702 | None:intergenic | 35.0% | |
| CTGATCTTCATCTAATGACA+TGG | - | tig0023498:6783-6802 | None:intergenic | 35.0% | |
| TAGGGAAGTTAAATTACGAG+TGG | - | tig0023498:6807-6826 | None:intergenic | 35.0% | |
| CTAGGTTATTGGATGAAGAT+CGG | - | tig0023498:6865-6884 | None:intergenic | 35.0% | |
| AAATTTGTGCATGAACTGCA+TGG | + | tig0023498:7142-7161 | Msa1409220:CDS | 35.0% | |
| GATTGACCATAACCTCAATT+TGG | + | tig0023498:7217-7236 | Msa1409220:CDS | 35.0% | |
| TAGAACCCAAATTGAGGTTA+TGG | - | tig0023498:7226-7245 | None:intergenic | 35.0% | |
| TAGTTGTAGAACCCAAATTG+AGG | - | tig0023498:7232-7251 | None:intergenic | 35.0% | |
| AGTTTATTTGTGTGTGTGTG+TGG | + | tig0023498:7252-7271 | Msa1409220:intron | 35.0% | |
| GTTTATTTGTGTGTGTGTGT+GGG | + | tig0023498:7253-7272 | Msa1409220:intron | 35.0% | |
| CGGAAATTATGTACTTGTGT+TGG | + | tig0023498:7359-7378 | Msa1409220:intron | 35.0% | |
| GTTGGTTGCTATGGTTAATT+TGG | + | tig0023498:7377-7396 | Msa1409220:intron | 35.0% | |
| ATTTCTTACATGTGTAGCTC+TGG | - | tig0023498:7452-7471 | None:intergenic | 35.0% | |
| AGCTACACATGTAAGAAATG+TGG | + | tig0023498:7453-7472 | Msa1409220:intron | 35.0% | |
| TAAATGATCTGTTAGCAGTG+CGG | - | tig0023498:7520-7539 | None:intergenic | 35.0% | |
| !!! | GAAATGTTTTGTTTTCCCTG+TGG | + | tig0023498:7622-7641 | Msa1409220:intron | 35.0% |
| ! | TTCTTAGCATTTTTGTCACC+TGG | + | tig0023498:7667-7686 | Msa1409220:intron | 35.0% |
| TGCACTTAATGCAATAAACC+AGG | - | tig0023498:7688-7707 | None:intergenic | 35.0% | |
| ACTTCTATGCTGAAATTGAC+AGG | + | tig0023498:7761-7780 | Msa1409220:intron | 35.0% | |
| ! | TTTTTGGATACAACCAGACA+TGG | + | tig0023498:7980-7999 | Msa1409220:three_prime_UTR | 35.0% |
| TTCGTTGTTGATGTTTGGGA+GGG | - | tig0023498:4811-4830 | None:intergenic | 40.0% | |
| ! | TTTCGAGTAAGAGATTCTCG+AGG | - | tig0023498:4857-4876 | None:intergenic | 40.0% |
| ! | GGAAATCCTCGAAGGATTTT+TGG | - | tig0023498:4941-4960 | None:intergenic | 40.0% |
| ! | TCCTTCGAGGATTTCCTTTT+CGG | + | tig0023498:4945-4964 | Msa1409220:CDS | 40.0% |
| GGGAGAGTAGTATTTGTGTT+GGG | + | tig0023498:5132-5151 | Msa1409220:CDS | 40.0% | |
| ACTCCAACTGGTTGTGAATA+AGG | - | tig0023498:5293-5312 | None:intergenic | 40.0% | |
| TATTCACAACCAGTTGGAGT+TGG | + | tig0023498:5293-5312 | Msa1409220:CDS | 40.0% | |
| AACCAAATTGTTGACCTTGG+AGG | - | tig0023498:5446-5465 | None:intergenic | 40.0% | |
| ! | GGAAGTTGGATTTTCTGTTC+TGG | + | tig0023498:5665-5684 | Msa1409220:intron | 40.0% |
| ! | CTGGGTTTAAGATGTTTAGG+TGG | + | tig0023498:5684-5703 | Msa1409220:intron | 40.0% |
| TTTAGGTGGTAGGCACAAAT+AGG | + | tig0023498:5698-5717 | Msa1409220:intron | 40.0% | |
| TTAGGTGGTAGGCACAAATA+GGG | + | tig0023498:5699-5718 | Msa1409220:intron | 40.0% | |
| TACATCAAATGAGCTTCCCT+AGG | - | tig0023498:5748-5767 | None:intergenic | 40.0% | |
| CTCTATCAAATTGGAGCCAT+TGG | - | tig0023498:5859-5878 | None:intergenic | 40.0% | |
| AACACAACAACAACAGGGTT+TGG | - | tig0023498:5938-5957 | None:intergenic | 40.0% | |
| CCATTGAACACAACAACAAC+AGG | - | tig0023498:5944-5963 | None:intergenic | 40.0% | |
| ! | CCTGTTGTTGTTGTGTTCAA+TGG | + | tig0023498:5941-5960 | Msa1409220:intron | 40.0% |
| CTTAAGTAGTTGCGGATCTA+AGG | - | tig0023498:6081-6100 | None:intergenic | 40.0% | |
| TCCAAAGTCGTGATTCTTGT+CGG | + | tig0023498:6117-6136 | Msa1409220:intron | 40.0% | |
| TGATTCTTGTCGGAAACCAT+GGG | + | tig0023498:6127-6146 | Msa1409220:intron | 40.0% | |
| TTGATCATAGTCGCTTCAGT+TGG | + | tig0023498:6190-6209 | Msa1409220:intron | 40.0% | |
| GTTGCCATGACCTCAAAATT+TGG | + | tig0023498:6421-6440 | Msa1409220:intron | 40.0% | |
| TGTGGATGAATTTGGCTGTT+AGG | + | tig0023498:6464-6483 | Msa1409220:intron | 40.0% | |
| GAATTTGGCTGTTAGGAAGT+TGG | + | tig0023498:6471-6490 | Msa1409220:intron | 40.0% | |
| GGAAGTTGGATCACATGTTT+AGG | + | tig0023498:6485-6504 | Msa1409220:intron | 40.0% | |
| GGGAGCTATTTGATGAAGAT+TGG | + | tig0023498:6621-6640 | Msa1409220:intron | 40.0% | |
| TTGGATCAAATTGGAACCAC+TGG | - | tig0023498:6674-6693 | None:intergenic | 40.0% | |
| TTGATCCAAACTTCATCCGA+CGG | + | tig0023498:6685-6704 | Msa1409220:intron | 40.0% | |
| CACAGCTACTGAAATTGTGA+CGG | + | tig0023498:6893-6912 | Msa1409220:intron | 40.0% | |
| ! | TTGTCGGAAACCATGGATTT+TGG | + | tig0023498:6939-6958 | Msa1409220:intron | 40.0% |
| ATTGAGGTTATGGTCAATCC+TGG | - | tig0023498:7216-7235 | None:intergenic | 40.0% | |
| ! | TTTTGAGCTTATGTGTTGCG+TGG | + | tig0023498:7312-7331 | Msa1409220:intron | 40.0% |
| !! | TGTACTTGTGTTGGTTGCTA+TGG | + | tig0023498:7368-7387 | Msa1409220:intron | 40.0% |
| !!! | ATGTTTTGTTTTCCCTGTGG+TGG | + | tig0023498:7625-7644 | Msa1409220:intron | 40.0% |
| CTCAAAGGGGATGAAAATGA+TGG | - | tig0023498:7845-7864 | None:intergenic | 40.0% | |
| GGGATTTGCACTGTGAAAAT+GGG | - | tig0023498:7884-7903 | None:intergenic | 40.0% | |
| TGGGATTTGCACTGTGAAAA+TGG | - | tig0023498:7885-7904 | None:intergenic | 40.0% | |
| CTTCGTTGTTGATGTTTGGG+AGG | - | tig0023498:4812-4831 | None:intergenic | 45.0% | |
| GAGTAAGAGATTCTCGAGGT+GGG | - | tig0023498:4853-4872 | None:intergenic | 45.0% | |
| !! | CCTCGAAGGATTTTTGGGAA+GGG | - | tig0023498:4935-4954 | None:intergenic | 45.0% |
| !! | TCCTCGAAGGATTTTTGGGA+AGG | - | tig0023498:4936-4955 | None:intergenic | 45.0% |
| GTCGTCTTCGTCATCATCAT+CGG | - | tig0023498:4973-4992 | None:intergenic | 45.0% | |
| AAGCTGATTGTCAGTGGAGA+AGG | + | tig0023498:5068-5087 | Msa1409220:CDS | 45.0% | |
| AGCTGATTGTCAGTGGAGAA+GGG | + | tig0023498:5069-5088 | Msa1409220:CDS | 45.0% | |
| GTAACTGCTTCACCGGAATT+CGG | - | tig0023498:5107-5126 | None:intergenic | 45.0% | |
| CGGGAGAGTAGTATTTGTGT+TGG | + | tig0023498:5131-5150 | Msa1409220:CDS | 45.0% | |
| TATGTTGTGTGGGAATGGCA+TGG | + | tig0023498:5179-5198 | Msa1409220:CDS | 45.0% | |
| ATGTTGTGTGGGAATGGCAT+GGG | + | tig0023498:5180-5199 | Msa1409220:CDS | 45.0% | |
| GAATGGCATGGGCATATCAT+GGG | + | tig0023498:5191-5210 | Msa1409220:CDS | 45.0% | |
| AATGGCATGGGCATATCATG+GGG | + | tig0023498:5192-5211 | Msa1409220:CDS | 45.0% | |
| ! | TTTTCAGAGGACTGTGCCTT+CGG | + | tig0023498:5262-5281 | Msa1409220:CDS | 45.0% |
| CGTCCTTATTCACAACCAGT+TGG | + | tig0023498:5287-5306 | Msa1409220:CDS | 45.0% | |
| TCTTCATCTCCAACTCCAAC+TGG | - | tig0023498:5305-5324 | None:intergenic | 45.0% | |
| TGAAGCTGATGTTGTCAGCA+AGG | + | tig0023498:5337-5356 | Msa1409220:CDS | 45.0% | |
| GAAGCTGATGTTGTCAGCAA+GGG | + | tig0023498:5338-5357 | Msa1409220:CDS | 45.0% | |
| TGTTGTCAGCAAGGGTTTGA+AGG | + | tig0023498:5346-5365 | Msa1409220:CDS | 45.0% | |
| CTCCTCCAAGGTCAACAATT+TGG | + | tig0023498:5441-5460 | Msa1409220:intron | 45.0% | |
| GGTAGGCACAAATAGGGTTT+CGG | + | tig0023498:5705-5724 | Msa1409220:intron | 45.0% | |
| TTGATCCGGTCTTCATCCAA+TGG | + | tig0023498:5840-5859 | Msa1409220:intron | 45.0% | |
| TCCGACAAGAATCACGACTT+TGG | - | tig0023498:6121-6140 | None:intergenic | 45.0% | |
| GTGATTCTTGTCGGAAACCA+TGG | + | tig0023498:6126-6145 | Msa1409220:intron | 45.0% | |
| ! | TTGTCGGAAACCATGGGTTT+TGG | + | tig0023498:6133-6152 | Msa1409220:intron | 45.0% |
| CCTGAACTGCATAACTGAGA+GGG | + | tig0023498:6353-6372 | Msa1409220:intron | 45.0% | |
| TCCTTCGCTGTGGATGAATT+TGG | + | tig0023498:6456-6475 | Msa1409220:intron | 45.0% | |
| CCGAGATAACAACCTGGTTT+GGG | - | tig0023498:6548-6567 | None:intergenic | 45.0% | |
| CCCAAACCAGGTTGTTATCT+CGG | + | tig0023498:6545-6564 | Msa1409220:intron | 45.0% | |
| CCAAACCAGGTTGTTATCTC+GGG | + | tig0023498:6546-6565 | Msa1409220:intron | 45.0% | |
| CAAACCAGGTTGTTATCTCG+GGG | + | tig0023498:6547-6566 | Msa1409220:intron | 45.0% | |
| ATCAACACATCCACTACCGT+CGG | - | tig0023498:6704-6723 | None:intergenic | 45.0% | |
| GTGTCGTGGATCTAGGTTAT+TGG | - | tig0023498:6876-6895 | None:intergenic | 45.0% | |
| CAATTTCAGTAGCTGTGTCG+TGG | - | tig0023498:6890-6909 | None:intergenic | 45.0% | |
| GTGATTCTTGTCGGAAACCA+TGG | + | tig0023498:6126-6145 | Msa1409220:intron | 45.0% | |
| CCAACTGAAGTGACTGTGAT+TGG | - | tig0023498:6998-7017 | None:intergenic | 45.0% | |
| CCAATCACAGTCACTTCAGT+TGG | + | tig0023498:6995-7014 | Msa1409220:intron | 45.0% | |
| TATTTGTGTGTGTGTGTGGG+TGG | + | tig0023498:7256-7275 | Msa1409220:intron | 45.0% | |
| ATTTGTGTGTGTGTGTGGGT+GGG | + | tig0023498:7257-7276 | Msa1409220:intron | 45.0% | |
| CCAACACCCTGTTACATCAT+CGG | + | tig0023498:7339-7358 | Msa1409220:intron | 45.0% | |
| AAAGCTCAAATGGGCGATGA+AGG | + | tig0023498:7415-7434 | Msa1409220:intron | 45.0% | |
| TAAGTTGTCTTGCCACCACA+GGG | - | tig0023498:7640-7659 | None:intergenic | 45.0% | |
| GATGTTTGGGAGGGAAGTCA+TGG | - | tig0023498:4802-4821 | None:intergenic | 50.0% | |
| TAAGAGATTCTCGAGGTGGG+TGG | - | tig0023498:4850-4869 | None:intergenic | 50.0% | |
| CGAGTAAGAGATTCTCGAGG+TGG | - | tig0023498:4854-4873 | None:intergenic | 50.0% | |
| CTGTCGTCATTGACGTTGTC+TGG | - | tig0023498:4909-4928 | None:intergenic | 50.0% | |
| CCCTTCCCAAAAATCCTTCG+AGG | + | tig0023498:4932-4951 | Msa1409220:CDS | 50.0% | |
| GCCGAAAAGGAAATCCTCGA+AGG | - | tig0023498:4949-4968 | None:intergenic | 50.0% | |
| CATCATCATCGGAGCCGAAA+AGG | - | tig0023498:4962-4981 | None:intergenic | 50.0% | |
| GCTGATTGTCAGTGGAGAAG+GGG | + | tig0023498:5070-5089 | Msa1409220:CDS | 50.0% | |
| GATACGCTGAAGCCGAATTC+CGG | + | tig0023498:5092-5111 | Msa1409220:CDS | 50.0% | |
| CCGAATCGTAACTGCTTCAC+CGG | - | tig0023498:5114-5133 | None:intergenic | 50.0% | |
| CCGGTGAAGCAGTTACGATT+CGG | + | tig0023498:5111-5130 | Msa1409220:CDS | 50.0% | |
| CGGTGAAGCAGTTACGATTC+GGG | + | tig0023498:5112-5131 | Msa1409220:CDS | 50.0% | |
| ! | TGTTGGGTGTCATGACGATG+AGG | + | tig0023498:5148-5167 | Msa1409220:CDS | 50.0% |
| ! | GGTGTCATGACGATGAGGAA+GGG | + | tig0023498:5153-5172 | Msa1409220:CDS | 50.0% |
| GTGTCATGACGATGAGGAAG+GGG | + | tig0023498:5154-5173 | Msa1409220:CDS | 50.0% | |
| ! | AGGAAGGGGAGTATGTTGTG+TGG | + | tig0023498:5168-5187 | Msa1409220:CDS | 50.0% |
| ! | GGAAGGGGAGTATGTTGTGT+GGG | + | tig0023498:5169-5188 | Msa1409220:CDS | 50.0% |
| ! | GGGAGTATGTTGTGTGGGAA+TGG | + | tig0023498:5174-5193 | Msa1409220:CDS | 50.0% |
| GGAATGGCATGGGCATATCA+TGG | + | tig0023498:5190-5209 | Msa1409220:CDS | 50.0% | |
| TGTGAATAAGGACGCTCCGA+AGG | - | tig0023498:5281-5300 | None:intergenic | 50.0% | |
| ATACTGATGCTGCTCCTGCT+AGG | + | tig0023498:5387-5406 | Msa1409220:CDS | 50.0% | |
| CTGCGATGAAGAATCCTAGC+AGG | - | tig0023498:5404-5423 | None:intergenic | 50.0% | |
| CTTCATCGCAGTCTCAATGC+TGG | + | tig0023498:5413-5432 | Msa1409220:CDS | 50.0% | |
| AATAGGGTTTCGGAACACCC+TGG | + | tig0023498:5715-5734 | Msa1409220:intron | 50.0% | |
| AACACCCTGGTTGTGATCCT+AGG | + | tig0023498:5728-5747 | Msa1409220:intron | 50.0% | |
| ACACCCTGGTTGTGATCCTA+GGG | + | tig0023498:5729-5748 | Msa1409220:intron | 50.0% | |
| CTTCCCTAGGATCACAACCA+GGG | - | tig0023498:5735-5754 | None:intergenic | 50.0% | |
| TGGAGCCATTGGATGAAGAC+CGG | - | tig0023498:5848-5867 | None:intergenic | 50.0% | |
| GCCTGAACTGCATAACTGAG+AGG | + | tig0023498:6352-6371 | Msa1409220:intron | 50.0% | |
| CCCTCTCAGTTATGCAGTTC+AGG | - | tig0023498:6356-6375 | None:intergenic | 50.0% | |
| !!! | TTTTGAGGTCATGGCAACCC+CGG | - | tig0023498:6419-6438 | None:intergenic | 50.0% |
| CTAGCAACTTTCCTTCGCTG+TGG | + | tig0023498:6446-6465 | Msa1409220:intron | 50.0% | |
| GCCAAATTCATCCACAGCGA+AGG | - | tig0023498:6460-6479 | None:intergenic | 50.0% | |
| !! | AACAACCTGGTTTGGGCGTT+CGG | - | tig0023498:6541-6560 | None:intergenic | 50.0% |
| CCCGAGATAACAACCTGGTT+TGG | - | tig0023498:6549-6568 | None:intergenic | 50.0% | |
| TTGATCCGATCGTCATCCAG+TGG | + | tig0023498:6655-6674 | Msa1409220:intron | 50.0% | |
| TGGAACCACTGGATGACGAT+CGG | - | tig0023498:6663-6682 | None:intergenic | 50.0% | |
| CACTACCGTCGGATGAAGTT+TGG | - | tig0023498:6693-6712 | None:intergenic | 50.0% | |
| CAAACTTCATCCGACGGTAG+TGG | + | tig0023498:6691-6710 | Msa1409220:intron | 50.0% | |
| AGTAGCTGTGTCGTGGATCT+AGG | - | tig0023498:6883-6902 | None:intergenic | 50.0% | |
| !! | AATTGGGAGAGCATCCCTCT+CGG | - | tig0023498:7168-7187 | None:intergenic | 50.0% |
| GGCTGACGTTGAAGGCAATT+GGG | - | tig0023498:7184-7203 | None:intergenic | 50.0% | |
| TGGCTGACGTTGAAGGCAAT+TGG | - | tig0023498:7185-7204 | None:intergenic | 50.0% | |
| AGACAACTGGCTGACGTTGA+AGG | - | tig0023498:7192-7211 | None:intergenic | 50.0% | |
| GGTCAATCCTGGTAGACAAC+TGG | - | tig0023498:7205-7224 | None:intergenic | 50.0% | |
| CCGATGATGTAACAGGGTGT+TGG | - | tig0023498:7342-7361 | None:intergenic | 50.0% | |
| CTAAGTTGTCTTGCCACCAC+AGG | - | tig0023498:7641-7660 | None:intergenic | 50.0% | |
| !! | GTTTGATGGGTTGCAAGCAG+AGG | + | tig0023498:7813-7832 | Msa1409220:CDS | 50.0% |
| ATTCTCGAGGTGGGTGGTTG+TGG | - | tig0023498:4844-4863 | None:intergenic | 55.0% | |
| GCGAAGAGTCGAGAGTCGAA+GGG | + | tig0023498:5036-5055 | Msa1409220:CDS | 55.0% | |
| CGAAGAGTCGAGAGTCGAAG+GGG | + | tig0023498:5037-5056 | Msa1409220:CDS | 55.0% | |
| ! | GGGTGTCATGACGATGAGGA+AGG | + | tig0023498:5152-5171 | Msa1409220:CDS | 55.0% |
| !! | ATGCTGGTTCTGCTCCTCCA+AGG | + | tig0023498:5429-5448 | Msa1409220:CDS | 55.0% |
| GCTTCCCTAGGATCACAACC+AGG | - | tig0023498:5736-5755 | None:intergenic | 55.0% | |
| !! | ACAACCTGGTTTGGGCGTTC+GGG | - | tig0023498:6540-6559 | None:intergenic | 55.0% |
| GGTTCCCCGAGATAACAACC+TGG | - | tig0023498:6554-6573 | None:intergenic | 55.0% | |
| CATGAACTGCATGGCCGAGA+GGG | + | tig0023498:7151-7170 | Msa1409220:CDS | 55.0% | |
| ACGTCAGCCAGTTGTCTACC+AGG | + | tig0023498:7195-7214 | Msa1409220:CDS | 55.0% | |
| CCGACCTCCTGGTAAGTACG+GGG | - | tig0023498:4999-5018 | None:intergenic | 60.0% | |
| CCCCGTACTTACCAGGAGGT+CGG | + | tig0023498:4996-5015 | Msa1409220:CDS | 60.0% | |
| CCCGACCTCCTGGTAAGTAC+GGG | - | tig0023498:5000-5019 | None:intergenic | 60.0% | |
| CCCGTACTTACCAGGAGGTC+GGG | + | tig0023498:4997-5016 | Msa1409220:CDS | 60.0% | |
| GCCCGACCTCCTGGTAAGTA+CGG | - | tig0023498:5001-5020 | None:intergenic | 60.0% | |
| TTGCTTTCTGCCCGACCTCC+TGG | - | tig0023498:5010-5029 | None:intergenic | 60.0% | |
| CGCGAAGAGTCGAGAGTCGA+AGG | + | tig0023498:5035-5054 | Msa1409220:CDS | 60.0% | |
| GGCTCGCGTGGAAGGTCATT+GGG | - | tig0023498:6386-6405 | None:intergenic | 60.0% | |
| TGGCTCGCGTGGAAGGTCAT+TGG | - | tig0023498:6387-6406 | None:intergenic | 60.0% | |
| AATGACCTTCCACGCGAGCC+AGG | + | tig0023498:6386-6405 | Msa1409220:intron | 60.0% | |
| ! | ACGCGAGCCAGGTTAGCTAC+CGG | + | tig0023498:6397-6416 | Msa1409220:intron | 60.0% |
| GATTCCCGAACGCCCAAACC+AGG | + | tig0023498:6533-6552 | Msa1409220:intron | 60.0% | |
| GCATGAACTGCATGGCCGAG+AGG | + | tig0023498:7150-7169 | Msa1409220:CDS | 60.0% | |
| TGTGTGTGTGTGTGGGTGGG+CGG | + | tig0023498:7260-7279 | Msa1409220:intron | 60.0% | |
| CTCGAGGTGGGTGGTTGTGG+AGG | - | tig0023498:4841-4860 | None:intergenic | 65.0% | |
| CGACGCTCCCCGTACTTACC+AGG | + | tig0023498:4989-5008 | Msa1409220:CDS | 65.0% | |
| CGCTCCCCGTACTTACCAGG+AGG | + | tig0023498:4992-5011 | Msa1409220:CDS | 65.0% | |
| ! | GCTAACCTGGCTCGCGTGGA+AGG | - | tig0023498:6394-6413 | None:intergenic | 65.0% |
| ! | GGTAGCTAACCTGGCTCGCG+TGG | - | tig0023498:6398-6417 | None:intergenic | 65.0% |
| ! | CGCGAGCCAGGTTAGCTACC+GGG | + | tig0023498:6398-6417 | Msa1409220:intron | 65.0% |
| ! | GCGAGCCAGGTTAGCTACCG+GGG | + | tig0023498:6399-6418 | Msa1409220:intron | 65.0% |
| GGCAACCCCGGTAGCTAACC+TGG | - | tig0023498:6407-6426 | None:intergenic | 65.0% | |
| GTGTGTGTGTGTGGGTGGGC+GGG | + | tig0023498:7261-7280 | Msa1409220:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023498 | gene | 4729 | 8061 | 4729 | ID=Msa1409220;Name=Msa1409220 |
| tig0023498 | mRNA | 4729 | 8061 | 4729 | ID=Msa1409220-mRNA-1;Parent=Msa1409220;Name=Msa1409220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|0|0.66|0.66|1|1|3|220|291 |
| tig0023498 | exon | 4729 | 5450 | 4729 | ID=Msa1409220-mRNA-1:exon:25874;Parent=Msa1409220-mRNA-1 |
| tig0023498 | exon | 7100 | 7266 | 7100 | ID=Msa1409220-mRNA-1:exon:25875;Parent=Msa1409220-mRNA-1 |
| tig0023498 | exon | 7783 | 8061 | 7783 | ID=Msa1409220-mRNA-1:exon:25876;Parent=Msa1409220-mRNA-1 |
| tig0023498 | five_prime_UTR | 4729 | 4800 | 4729 | ID=Msa1409220-mRNA-1:five_prime_utr;Parent=Msa1409220-mRNA-1 |
| tig0023498 | CDS | 4801 | 5450 | 4801 | ID=Msa1409220-mRNA-1:cds;Parent=Msa1409220-mRNA-1 |
| tig0023498 | CDS | 7100 | 7266 | 7100 | ID=Msa1409220-mRNA-1:cds;Parent=Msa1409220-mRNA-1 |
| tig0023498 | CDS | 7783 | 7841 | 7783 | ID=Msa1409220-mRNA-1:cds;Parent=Msa1409220-mRNA-1 |
| tig0023498 | three_prime_UTR | 7842 | 8061 | 7842 | ID=Msa1409220-mRNA-1:three_prime_utr;Parent=Msa1409220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
