AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034110 MtrunA17_Chr1g0194631 98.901 91 1 0 33 123 37 127 2.34e-58 191
Msa0034110 MtrunA17_Chr5g0401921 80.392 51 10 0 51 101 147 197 2.70e-24 96.7
Msa0034110 MtrunA17_Chr7g0235091 41.463 82 48 0 43 124 47 128 2.60e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034110 AT4G02020.3 63.043 92 31 3 34 124 105 194 3.75e-27 105
Msa0034110 AT4G02020.2 63.043 92 31 3 34 124 105 194 3.75e-27 105
Msa0034110 AT4G02020.4 63.043 92 31 3 34 124 105 194 4.21e-27 105
Msa0034110 AT4G02020.1 63.043 92 31 3 34 124 105 194 4.71e-27 104
Msa0034110 AT2G23380.1 67.123 73 24 0 51 123 134 206 1.64e-23 94.7

Find 210 sgRNAs with CRISPR-Local

Find 593 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAACATGTTTGCTTATT+TGG 0.044313 1_1:+62003936 Msa0034110:three_prime_UTR
TGCTAATATGCCTTAAATTA+TGG 0.152574 1_1:+62003780 Msa0034110:three_prime_UTR
AAATGACAAACTTACCTTAA+TGG 0.162835 1_1:-61995415 None:intergenic
TTGGGGAAGTCTGATGTTTC+TGG 0.176477 1_1:+62002473 Msa0034110:three_prime_UTR
GATATATCTATTTCTCTATT+AGG 0.205796 1_1:-62003984 None:intergenic
AAGGATTGTTCTTGTCTTAA+TGG 0.220999 1_1:+61999988 Msa0034110:three_prime_UTR
GTCTCATTTGTGACAGCTTT+TGG 0.239771 1_1:-61998042 None:intergenic
TGTACCCTACCCATAATTTA+AGG 0.252829 1_1:-62003790 None:intergenic
CAAGGAAGTTTAAATATTCT+TGG 0.253650 1_1:+61999866 Msa0034110:three_prime_UTR
TGGATGGGGAGCCTTCTTAA+AGG 0.301212 1_1:+62002493 Msa0034110:three_prime_UTR
GAACGAGTTGATGGAATTCT+TGG 0.315350 1_1:+61998096 Msa0034110:three_prime_UTR
TGACTATTGAATTTCTAGTA+TGG 0.326503 1_1:+61996630 Msa0034110:three_prime_UTR
ATAGCTAGGAACTTACTTTC+TGG 0.330151 1_1:+61998790 Msa0034110:three_prime_UTR
TTGCCCTGGTTTCTGTCTCC+TGG 0.332763 1_1:-61995885 None:intergenic
GATTACCTGGATTTCTAAAC+TGG 0.334427 1_1:-61996716 None:intergenic
CGAGAGAATTCAATCCATTA+AGG 0.335586 1_1:+61995401 Msa0034110:CDS
TTACAAGAATCCTGAGAATC+AGG 0.335745 1_1:-61997949 None:intergenic
TTCACCTTTGCATAGCAGTT+GGG 0.335759 1_1:-62003004 None:intergenic
CTGCTGGTCACCCAACAATA+TGG 0.336522 1_1:+61999893 Msa0034110:three_prime_UTR
TTGAATGAAGTTGGGATTCA+TGG 0.340600 1_1:-61996572 None:intergenic
GGTACAGTGAGATAATAAAA+TGG 0.344180 1_1:+62003807 Msa0034110:three_prime_UTR
ATGGTTTATAAGTTAAAATC+TGG 0.348479 1_1:-61996553 None:intergenic
AGTATCAGAGAAAGTAATAT+TGG 0.369713 1_1:+61996889 Msa0034110:three_prime_UTR
GCTAATATGCCTTAAATTAT+GGG 0.372892 1_1:+62003781 Msa0034110:three_prime_UTR
CACAGGTCTATTATTTCAGC+TGG 0.378581 1_1:+61998871 Msa0034110:three_prime_UTR
GAATTCTTGGTTTCTCAGAT+TGG 0.379032 1_1:+61998109 Msa0034110:three_prime_UTR
CTCAGCAACCTCGGTCTAGA+TGG 0.384033 1_1:-61999829 None:intergenic
TTGCAACTGATTTATCTTGT+TGG 0.384750 1_1:-61995364 None:intergenic
GCCCATGGAGGTGCTTGATC+TGG 0.396645 1_1:-62003544 None:intergenic
CTCTTCTATGATTATTGCTA+TGG 0.397112 1_1:+62003520 Msa0034110:three_prime_UTR
CTATAGGTAATGTTGGTTGC+TGG 0.407659 1_1:+62003445 Msa0034110:intron
AATTGCTGATTCGTCTCTCT+TGG 0.412706 1_1:-62003584 None:intergenic
ATAGATATATCTTTCTTTGA+GGG 0.417170 1_1:+62003996 Msa0034110:three_prime_UTR
TGGAAATGTTTGGCAGAAAC+AGG 0.418632 1_1:+61998166 Msa0034110:three_prime_UTR
AAGGTTCCCACATCATCATT+TGG 0.421371 1_1:-61995339 None:intergenic
ACTCAGAAAACTTGAGTAAA+CGG 0.424610 1_1:+61997878 Msa0034110:three_prime_UTR
TAATAGCAAGAGCTTACATT+TGG 0.424724 1_1:+61998014 Msa0034110:three_prime_UTR
TTGAAGGGAGTGGAAATGTT+TGG 0.426717 1_1:+61998156 Msa0034110:three_prime_UTR
CAACAGTTTCGACAGACATC+TGG 0.427301 1_1:-62000585 None:intergenic
TATTTCAGCTGGTTCAATCA+TGG 0.427476 1_1:+61998882 Msa0034110:three_prime_UTR
GAGTATACTGCATGCAAGAT+TGG 0.429208 1_1:-61999939 None:intergenic
AATTTCTAGTATGGCATTTG+AGG 0.432378 1_1:+61996639 Msa0034110:three_prime_UTR
TGTCTCTGTTGAGAATATAC+TGG 0.432860 1_1:-62003687 None:intergenic
AGAGTGAAAAGAAGACAGTT+TGG 0.433099 1_1:+61997241 Msa0034110:intron
AATAGATATATCTTTCTTTG+AGG 0.433167 1_1:+62003995 Msa0034110:three_prime_UTR
TGGTGATCAGTGCTACCTTC+AGG 0.436446 1_1:+61997293 Msa0034110:three_prime_UTR
ATGTTGTTAGCAAGTATGTT+GGG 0.438742 1_1:+61996689 Msa0034110:three_prime_UTR
CAGCTGTGGGGATGGTACAC+TGG 0.439264 1_1:+62002265 Msa0034110:intron
TCAATGGAAGAACGAGTTGA+TGG 0.443369 1_1:+61998087 Msa0034110:three_prime_UTR
TTCTCTAGATACATGCTCAT+AGG 0.445332 1_1:-61996955 None:intergenic
CTTAATGGATTGAATTCTCT+CGG 0.445675 1_1:-61995400 None:intergenic
AAGATCGCTTCCTGATTCTC+AGG 0.449551 1_1:+61997939 Msa0034110:three_prime_UTR
CATTGGCCATGGCTCATCAA+TGG 0.453407 1_1:-62003636 None:intergenic
CACAATGGCAACCTCTGAAC+CGG 0.454848 1_1:-62000503 None:intergenic
ATTCACCTTTGCATAGCAGT+TGG 0.455961 1_1:-62003005 None:intergenic
GCTGAACGTTTGAATGAAGT+TGG 0.460006 1_1:-61996581 None:intergenic
GTTCGAAGAGCTGCAAGAAC+CGG 0.461634 1_1:+62000484 Msa0034110:three_prime_UTR
ACTGCCAGGTTCTTCTGCAC+TGG 0.463190 1_1:-61997794 None:intergenic
GACAAACTCGTGACATCTCA+TGG 0.464677 1_1:+62003706 Msa0034110:three_prime_UTR
TCGTCTCTCTTGGAACCCTC+AGG 0.464748 1_1:-62003574 None:intergenic
AGAGAAAGAGTTATACTTGA+AGG 0.465034 1_1:+61998140 Msa0034110:three_prime_UTR
TACTAACTTACCACAAAATA+CGG 0.467763 1_1:-61996305 None:intergenic
ATTAATCATAACCTTTAAGA+AGG 0.469624 1_1:-62002504 None:intergenic
TGGATTGAATTCTCTCGGCC+TGG 0.469701 1_1:-61995395 None:intergenic
ACCGGCATCAATGTGTTCCT+TGG 0.472051 1_1:-62003491 None:intergenic
AAATATTCTTGGAAGTCTGC+TGG 0.473416 1_1:+61999877 Msa0034110:three_prime_UTR
TTGAGCAACTGCCACTGAAA+AGG 0.473535 1_1:+62003736 Msa0034110:three_prime_UTR
ATTGGCCATGGCTCATCAAT+GGG 0.475159 1_1:-62003635 None:intergenic
GAAGTCTGATGTTTCTGGAT+GGG 0.479401 1_1:+62002478 Msa0034110:three_prime_UTR
CTGAACGTTTGAATGAAGTT+GGG 0.482197 1_1:-61996580 None:intergenic
GTACAGTGAGATAATAAAAT+GGG 0.484464 1_1:+62003808 Msa0034110:three_prime_UTR
AGCCTCAAGTTTGTACAAGC+TGG 0.487231 1_1:-62003660 None:intergenic
GAGCCACATCGGCGTGGAGA+AGG 0.489074 1_1:+62002290 Msa0034110:three_prime_UTR
GATTACCACCATATACATCT+TGG 0.489282 1_1:+61995955 Msa0034110:CDS
TCGACTTCTACATTGACTCT+TGG 0.492456 1_1:-62000526 None:intergenic
TCTGTCGAAACTGTTGGGTT+AGG 0.492462 1_1:+62000592 Msa0034110:three_prime_UTR
GTTCTTGATGCTTATCGTAA+AGG 0.493028 1_1:+62002947 Msa0034110:three_prime_UTR
AAGTCTGATGTTTCTGGATG+GGG 0.494803 1_1:+62002479 Msa0034110:three_prime_UTR
GCTGACGATCAATCAGTTGT+TGG 0.496379 1_1:+61996168 Msa0034110:CDS
GGGCACCAGTTTAGAAATCC+AGG 0.497692 1_1:+61996711 Msa0034110:three_prime_UTR
TCACCTTTGCATAGCAGTTG+GGG 0.500009 1_1:-62003003 None:intergenic
AGAAAGTAATATTGGTAGGT+TGG 0.500552 1_1:+61996897 Msa0034110:three_prime_UTR
AATGTTGTTAGCAAGTATGT+TGG 0.504453 1_1:+61996688 Msa0034110:three_prime_UTR
AGATGTCTGTCGAAACTGTT+GGG 0.506928 1_1:+62000587 Msa0034110:three_prime_UTR
AGCAGTTGGGGTTTGATGAG+TGG 0.507871 1_1:-62002991 None:intergenic
CCATGGCTCATCAATGGGAT+TGG 0.508976 1_1:-62003630 None:intergenic
GACGACAGAAAAGGTTATCA+AGG 0.510059 1_1:-61997002 None:intergenic
AGAGTTATACTTGAAGGGAG+TGG 0.511021 1_1:+61998146 Msa0034110:three_prime_UTR
GACCAGCATCCTAAAAGCTC+AGG 0.512493 1_1:+61996919 Msa0034110:three_prime_UTR
AGCAAGAGCTTACATTTGGA+TGG 0.514477 1_1:+61998018 Msa0034110:three_prime_UTR
GTCCAGATCAAGCACCTCCA+TGG 0.515220 1_1:+62003542 Msa0034110:three_prime_UTR
TTCCTTACGGGATATATCAA+AGG 0.515656 1_1:-61997149 None:intergenic
GATCTGTGTTTCAATTATTG+TGG 0.520115 1_1:+61996384 Msa0034110:three_prime_UTR
CCAGGCACCGACGACAGAAA+AGG 0.520888 1_1:-61997011 None:intergenic
CCTGCTCATTCAAATCGAAA+AGG 0.520942 1_1:-62002697 None:intergenic
TTTCTTATCCCGAAAAGACC+CGG 0.523094 1_1:-61997731 None:intergenic
GAGTCATATAGATGCTCTGT+TGG 0.524097 1_1:+61996453 Msa0034110:three_prime_UTR
GGAAGTCTGATGTTTCTGGA+TGG 0.525818 1_1:+62002477 Msa0034110:three_prime_UTR
TGTTTCTTTGCTCTACCTTG+TGG 0.528560 1_1:-62003607 None:intergenic
ATGTTTGTAGAATAATGTGC+TGG 0.529641 1_1:-62003922 None:intergenic
GATTGTTCTTGTCTTAATGG+TGG 0.531062 1_1:+61999991 Msa0034110:three_prime_UTR
CTGATTTATCTTGTTGGACA+AGG 0.531637 1_1:-61995358 None:intergenic
AGCTGAAATAATAGACCTGT+GGG 0.532398 1_1:-61998869 None:intergenic
AAGCATCAAGATTCCACGTA+TGG 0.533307 1_1:+61995929 Msa0034110:CDS
CCATGACAATCAATTCTTGT+CGG 0.533836 1_1:-61997832 None:intergenic
TCGGTCTAGATGGCATGTCT+TGG 0.533864 1_1:-61999819 None:intergenic
TAATGTGCTGGGCATCCAAA+AGG 0.535112 1_1:-62003910 None:intergenic
TCTGCAGTTGCCTCATAGCT+AGG 0.536215 1_1:+61998776 Msa0034110:intron
CCATCCAGTGCAGAAGAACC+TGG 0.536754 1_1:+61997790 Msa0034110:three_prime_UTR
AAGTATAACTCTTTCTCTAG+AGG 0.540229 1_1:-61998135 None:intergenic
TGAGGAACACGGGTTAAATG+AGG 0.542454 1_1:+61996657 Msa0034110:three_prime_UTR
TTCTGGTTCGAAGACTTGCA+TGG 0.543056 1_1:+61998807 Msa0034110:three_prime_UTR
CCAGGTTCTTCTGCACTGGA+TGG 0.543278 1_1:-61997790 None:intergenic
GAGAAAGAGTTATACTTGAA+GGG 0.544561 1_1:+61998141 Msa0034110:three_prime_UTR
TCACGCCCAGCAGCAAAACA+TGG 0.547646 1_1:-62000555 None:intergenic
AGTGTAGTACTCTGACTGCC+AGG 0.547776 1_1:-61997808 None:intergenic
CCCTCAGGTTTACGAGCCCA+TGG 0.549721 1_1:-62003559 None:intergenic
ATATGCCTTAAATTATGGGT+AGG 0.550596 1_1:+62003785 Msa0034110:three_prime_UTR
TCAGAGAAAGTAATATTGGT+AGG 0.550783 1_1:+61996893 Msa0034110:three_prime_UTR
TACATTGACTCTTGGCACAA+TGG 0.551079 1_1:-62000518 None:intergenic
TACAAGCTGGACATTGGCCA+TGG 0.552644 1_1:-62003647 None:intergenic
GTTCACCCGTGTACTCTCCT+AGG 0.552754 1_1:-62002613 None:intergenic
TATTAAAAGTTGTGTGGTCA+TGG 0.554226 1_1:-61996530 None:intergenic
CAGATGTCTGTCGAAACTGT+TGG 0.555785 1_1:+62000586 Msa0034110:three_prime_UTR
TATGCCTTAAATTATGGGTA+GGG 0.557311 1_1:+62003786 Msa0034110:three_prime_UTR
AGCTGTGGGGATGGTACACT+GGG 0.558478 1_1:+62002266 Msa0034110:intron
ATGACATGTCTTGATTGCCC+TGG 0.559314 1_1:-61995899 None:intergenic
ATCATAGAAGAGCTCCTCAC+CGG 0.561900 1_1:-62003509 None:intergenic
TAATTGAAACACAGATCGAT+TGG 0.565905 1_1:-61996378 None:intergenic
ATACAAGTCTTATTTCTCAA+AGG 0.566304 1_1:-61996501 None:intergenic
TTCTTATCCCGAAAAGACCC+GGG 0.566631 1_1:-61997730 None:intergenic
GGGTCCAGGAGACAGAAACC+AGG 0.568933 1_1:+61995881 Msa0034110:intron
GCCAAGGAACACATTGATGC+CGG 0.569010 1_1:+62003490 Msa0034110:three_prime_UTR
ACTGCTGCTATAGGTAATGT+TGG 0.569757 1_1:+62003438 Msa0034110:intron
AGTTTGTACAAGCTGGACAT+TGG 0.570669 1_1:-62003653 None:intergenic
TCAGTTGCAAAAGCAAATCC+AGG 0.571291 1_1:+61995377 Msa0034110:CDS
ACGCATCAGGAATCAGAGAA+TGG 0.572672 1_1:+61996146 Msa0034110:intron
CCGACAAGAATTGATTGTCA+TGG 0.573856 1_1:+61997832 Msa0034110:three_prime_UTR
AAAGTAAGTTCCTAGCTATG+AGG 0.582475 1_1:-61998786 None:intergenic
AGAGCCGCCAAATGATGATG+TGG 0.582841 1_1:+61995332 Msa0034110:CDS
AGCTGCAAGAACCGGTTCAG+AGG 0.582865 1_1:+62000492 Msa0034110:three_prime_UTR
GTTGCTGGAGATCATCGAGT+TGG 0.583554 1_1:+62003460 Msa0034110:three_prime_UTR
CACATTGATTGACACCCACA+TGG 0.585645 1_1:-61999961 None:intergenic
GTCCAGCTTGTACAAACTTG+AGG 0.588363 1_1:+62003658 Msa0034110:three_prime_UTR
ACAATTGTAGAGGAGACAGA+TGG 0.588503 1_1:+61997757 Msa0034110:three_prime_UTR
TCCAGATCAAGCACCTCCAT+GGG 0.593087 1_1:+62003543 Msa0034110:three_prime_UTR
ATGCTCTGTTGGAGCAAACA+CGG 0.593799 1_1:+61996464 Msa0034110:three_prime_UTR
TGACCTTCTCCACGCCGATG+TGG 0.594534 1_1:-62002293 None:intergenic
CACAGAGAAGCTGATAAGCG+TGG 0.596923 1_1:+62002644 Msa0034110:three_prime_UTR
TGAGTCACATTGTGCCGTGT+CGG 0.596974 1_1:-61997917 None:intergenic
TCTTTGTACAGCTGTGGGGA+TGG 0.597302 1_1:+62002257 Msa0034110:intron
AATCAGTTGTTGGAAGAAGA+CGG 0.597314 1_1:+61996178 Msa0034110:CDS
CCAATCCCATTGATGAGCCA+TGG 0.597523 1_1:+62003630 Msa0034110:three_prime_UTR
TAAGAAAACTACAATTGTAG+AGG 0.600144 1_1:+61997747 Msa0034110:three_prime_UTR
CTAGAAATTAGCCTAGCAGT+TGG 0.603863 1_1:+62003867 Msa0034110:three_prime_UTR
CACGCCCAGCAGCAAAACAT+GGG 0.606423 1_1:-62000554 None:intergenic
ATATCTAGTTATATGCATGA+TGG 0.607787 1_1:+61998832 Msa0034110:three_prime_UTR
GTTCCCACATCATCATTTGG+CGG 0.610279 1_1:-61995336 None:intergenic
AAAATTTGACACAGAGTGCA+CGG 0.611174 1_1:+61998915 Msa0034110:three_prime_UTR
ATCTGGTATTAAAAGTTGTG+TGG 0.612419 1_1:-61996536 None:intergenic
TTTCAAAAGATTCAACTCCC+GGG 0.612464 1_1:+61997713 Msa0034110:three_prime_UTR
GGAACACGGGTTAAATGAGG+AGG 0.618859 1_1:+61996660 Msa0034110:three_prime_UTR
ATATGGAAAAGAATTGCTGA+TGG 0.619252 1_1:+61999910 Msa0034110:three_prime_UTR
GAGGCATGTCAATTCCCCAC+AGG 0.619873 1_1:+61998854 Msa0034110:three_prime_UTR
AGTCTTATTTCTCAAAGGCG+TGG 0.620445 1_1:-61996496 None:intergenic
CAGCTGAAATAATAGACCTG+TGG 0.621680 1_1:-61998870 None:intergenic
AGTATGGCATTTGAGGAACA+CGG 0.622172 1_1:+61996646 Msa0034110:three_prime_UTR
ACAGAGAAGCTGATAAGCGT+GGG 0.622981 1_1:+62002645 Msa0034110:three_prime_UTR
TCCATGGGCTCGTAAACCTG+AGG 0.626427 1_1:+62003558 Msa0034110:three_prime_UTR
AATATCCAAGATGTATATGG+TGG 0.626743 1_1:-61995960 None:intergenic
AAACCCCAACTGCTATGCAA+AGG 0.629398 1_1:+62003000 Msa0034110:three_prime_UTR
TACTCAGGATACCAACTGCT+AGG 0.629686 1_1:-62003878 None:intergenic
CCATGGGCTCGTAAACCTGA+GGG 0.632587 1_1:+62003559 Msa0034110:three_prime_UTR
TCGAGTTGGCATATTCGCCA+AGG 0.633128 1_1:+62003474 Msa0034110:three_prime_UTR
GAGCCGCCAAATGATGATGT+GGG 0.634443 1_1:+61995333 Msa0034110:CDS
GGGAATCTAATGCATCACTC+AGG 0.636717 1_1:-61996981 None:intergenic
GGTTCAATCATGGACGACAA+AGG 0.638496 1_1:+61998892 Msa0034110:three_prime_UTR
TTATGATCAACGTGGAAGTG+AGG 0.638890 1_1:+61996206 Msa0034110:CDS
CAATTGTAGAGGAGACAGAT+GGG 0.639184 1_1:+61997758 Msa0034110:three_prime_UTR
ACAGTTTGGTCTGAGCCTGT+AGG 0.639905 1_1:+61997255 Msa0034110:three_prime_UTR
GGTGGTAATCTTTCCATACG+TGG 0.640705 1_1:-61995942 None:intergenic
TGATTACCTAGGAGAGTACA+CGG 0.641342 1_1:+62002607 Msa0034110:three_prime_UTR
ACGACAGAAAAGGTTATCAA+GGG 0.642705 1_1:-61997001 None:intergenic
TCTAGTTATATGCATGATGG+AGG 0.645067 1_1:+61998835 Msa0034110:three_prime_UTR
ACAAACTCGTGACATCTCAT+GGG 0.647106 1_1:+62003707 Msa0034110:three_prime_UTR
GTATGGCATTTGAGGAACAC+GGG 0.649134 1_1:+61996647 Msa0034110:three_prime_UTR
TGTTGTTAGCAAGTATGTTG+GGG 0.651009 1_1:+61996690 Msa0034110:three_prime_UTR
GGAACACATTGATGCCGGTG+AGG 0.653810 1_1:+62003495 Msa0034110:three_prime_UTR
CTGGGAGAGCCACATCGGCG+TGG 0.657062 1_1:+62002284 Msa0034110:three_prime_UTR
GCATGCAGTATACTCCATGT+GGG 0.660903 1_1:+61999947 Msa0034110:three_prime_UTR
GTGTCAATCAATGTGTGGAA+AGG 0.662829 1_1:+61999969 Msa0034110:three_prime_UTR
GGTCCAGGAGACAGAAACCA+GGG 0.668116 1_1:+61995882 Msa0034110:CDS
GACGAATCAGCAATTCCACA+AGG 0.669739 1_1:+62003592 Msa0034110:three_prime_UTR
TGCATGCAGTATACTCCATG+TGG 0.671233 1_1:+61999946 Msa0034110:three_prime_UTR
TGTTTGTAGAATAATGTGCT+GGG 0.671986 1_1:-62003921 None:intergenic
GTTGTTAGCAAGTATGTTGG+GGG 0.673475 1_1:+61996691 Msa0034110:three_prime_UTR
ATTGATATGCAGTGACAGTG+AGG 0.679098 1_1:+61996230 Msa0034110:CDS
ACACTCTTTGTACAGCTGTG+GGG 0.688643 1_1:+62002253 Msa0034110:intron
CGGATCTATTATGATCAACG+TGG 0.691963 1_1:+61996198 Msa0034110:CDS
TGTGGGTGTCAATCAATGTG+TGG 0.694307 1_1:+61999964 Msa0034110:three_prime_UTR
AGGTAGCACTGATCACCACA+TGG 0.697472 1_1:-61997288 None:intergenic
GTACACTGGGAGAGCCACAT+CGG 0.707893 1_1:+62002279 Msa0034110:three_prime_UTR
AGTCACAAATCAGTCCGACA+CGG 0.716243 1_1:+61997903 Msa0034110:three_prime_UTR
GAAGAATTAACAGAACCTGA+CGG 0.721323 1_1:+61996252 Msa0034110:CDS
AAGACATGCCATCTAGACCG+AGG 0.737982 1_1:+61999821 Msa0034110:three_prime_UTR
CGGCGTGGAGAAGGTCAATG+CGG 0.745375 1_1:+62002299 Msa0034110:three_prime_UTR
TCAGGTTTACGAGCCCATGG+AGG 0.763936 1_1:-62003556 None:intergenic
GATTACCTAGGAGAGTACAC+GGG 0.774788 1_1:+62002608 Msa0034110:three_prime_UTR
GCTGAAATAATAGACCTGTG+GGG 0.791200 1_1:-61998868 None:intergenic
GTAGGTGATAGAAAACCATG+TGG 0.821461 1_1:+61997273 Msa0034110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTGTTAGAAAATTA+AGG + chr1_1:62000139-62000158 Msa0034110:intron 10.0%
!! TTCCATATTTAATTAAAATT+TGG + chr1_1:62000903-62000922 Msa0034110:intron 10.0%
!!! GATATTTTGTTTTGTAATAT+TGG + chr1_1:61995304-61995323 Msa0034110:intron 15.0%
!!! ATTAAGTTGAAAATAACATA+GGG - chr1_1:61997180-61997199 None:intergenic 15.0%
!!! TGAAGTATTTTTTATATTTG+AGG + chr1_1:61997337-61997356 Msa0034110:intron 15.0%
!!! TTTTTCTGTTATTTTCTTTT+GGG + chr1_1:61999003-61999022 Msa0034110:intron 15.0%
!!! TTTTCGTACATAATAAAATA+TGG - chr1_1:61999070-61999089 None:intergenic 15.0%
!!! ATATTTTATTATGTACGAAA+AGG + chr1_1:61999069-61999088 Msa0034110:intron 15.0%
!!! AATTTTATTTAATGGAAAAC+TGG + chr1_1:61999194-61999213 Msa0034110:intron 15.0%
!! TATTTAGTTGCATAATAAAA+AGG + chr1_1:61999527-61999546 Msa0034110:intron 15.0%
!! ATTTAGTTGCATAATAAAAA+GGG + chr1_1:61999528-61999547 Msa0034110:intron 15.0%
!! TATAGAACATTATTATATCA+TGG + chr1_1:61999702-61999721 Msa0034110:intron 15.0%
!! TAATCTTAAAAGAAAAAGAT+AGG - chr1_1:62000849-62000868 None:intergenic 15.0%
!!! CTCCAAATTTTAATTAAATA+TGG - chr1_1:62000908-62000927 None:intergenic 15.0%
!!! TATAAATATGCTATTTGAAA+GGG - chr1_1:62001844-62001863 None:intergenic 15.0%
!!! TTATAAATATGCTATTTGAA+AGG - chr1_1:62001845-62001864 None:intergenic 15.0%
!!! AATCCTAATTATTTTTCTCT+AGG + chr1_1:61995698-61995717 Msa0034110:intron 20.0%
!! TTTCCTAGAGAAAAATAATT+AGG - chr1_1:61995704-61995723 None:intergenic 20.0%
!! AAACCATAGAATTTACATAA+AGG - chr1_1:61995855-61995874 None:intergenic 20.0%
!! AAAAATATCCAAGATGTATA+TGG - chr1_1:61995966-61995985 None:intergenic 20.0%
!!! ATATACATCTTGGATATTTT+TGG + chr1_1:61995965-61995984 Msa0034110:CDS 20.0%
!!! ATCCATTTTATAAGAGAAAA+TGG + chr1_1:61996044-61996063 Msa0034110:intron 20.0%
!!! TCCATTTTATAAGAGAAAAT+GGG + chr1_1:61996045-61996064 Msa0034110:intron 20.0%
!! ATGGTTTATAAGTTAAAATC+TGG - chr1_1:61996556-61996575 None:intergenic 20.0%
!!! GATTAAGTTGAAAATAACAT+AGG - chr1_1:61997181-61997200 None:intergenic 20.0%
!!! AGTATTTTTTATATTTGAGG+TGG + chr1_1:61997340-61997359 Msa0034110:intron 20.0%
!!! GTATTTTTTATATTTGAGGT+GGG + chr1_1:61997341-61997360 Msa0034110:intron 20.0%
!! GAACCAATATACAATATAAA+TGG + chr1_1:61997456-61997475 Msa0034110:intron 20.0%
!! TATCTTCTGTTTATTAAAGT+TGG + chr1_1:61997488-61997507 Msa0034110:intron 20.0%
!! TTCCTTCTTATATATTTGAT+AGG + chr1_1:61997626-61997645 Msa0034110:intron 20.0%
!! TTCCTATCAAATATATAAGA+AGG - chr1_1:61997631-61997650 None:intergenic 20.0%
!! TAAAAATTCGTTGAATTCAA+TGG + chr1_1:61998071-61998090 Msa0034110:three_prime_UTR 20.0%
!!! CTTTTTATTTTGCTTTGTAT+TGG + chr1_1:61998480-61998499 Msa0034110:intron 20.0%
!! TTGAATGCATGAATAATTAT+GGG + chr1_1:61998575-61998594 Msa0034110:intron 20.0%
!!! GTTTTTCTGTTATTTTCTTT+TGG + chr1_1:61999002-61999021 Msa0034110:intron 20.0%
!!! TTTTCTGTTATTTTCTTTTG+GGG + chr1_1:61999004-61999023 Msa0034110:intron 20.0%
!!! AGATATATTGTTATTATGCT+TGG + chr1_1:61999162-61999181 Msa0034110:intron 20.0%
!!! GATATATTGTTATTATGCTT+GGG + chr1_1:61999163-61999182 Msa0034110:intron 20.0%
!!! ATGGGAACAATTTTATTTAA+TGG + chr1_1:61999186-61999205 Msa0034110:intron 20.0%
!! TAAAATCAGAGATAAGATTA+CGG - chr1_1:61999490-61999509 None:intergenic 20.0%
!! TGCAACTAAATATAAAATGA+CGG - chr1_1:61999519-61999538 None:intergenic 20.0%
!! GAAAAAGAAAAAAGAAACAT+TGG - chr1_1:61999600-61999619 None:intergenic 20.0%
!!! AGGTTTGAAGTAAAAAAATT+TGG - chr1_1:62000625-62000644 None:intergenic 20.0%
!!! AATATTTTTACCCCAATAAT+TGG + chr1_1:62000726-62000745 Msa0034110:intron 20.0%
!! AAGTATCTTGATATATTCTT+AGG + chr1_1:62001951-62001970 Msa0034110:intron 20.0%
!! TAGTTATGATTTGATACAAA+AGG - chr1_1:62002047-62002066 None:intergenic 20.0%
!!! ATTTTTATGTCAGATTATCT+TGG + chr1_1:62002454-62002473 Msa0034110:intron 20.0%
!!! TTTTTATGTCAGATTATCTT+GGG + chr1_1:62002455-62002474 Msa0034110:intron 20.0%
!!! ATTAATCATAACCTTTAAGA+AGG - chr1_1:62002507-62002526 None:intergenic 20.0%
!! TTCTTAAAGGTTATGATTAA+TGG + chr1_1:62002506-62002525 Msa0034110:intron 20.0%
!!! AATGTTTTCACAAAGTAAAT+GGG - chr1_1:62003069-62003088 None:intergenic 20.0%
!!! AAATGTTTTCACAAAGTAAA+TGG - chr1_1:62003070-62003089 None:intergenic 20.0%
!!! AAAAGGAAATTTTTATACTC+AGG - chr1_1:62003896-62003915 None:intergenic 20.0%
!!! TGAGTATAAAAATTTCCTTT+TGG + chr1_1:62003895-62003914 Msa0034110:three_prime_UTR 20.0%
!!! GATATATCTATTTCTCTATT+AGG - chr1_1:62003987-62004006 None:intergenic 20.0%
!!! TTTTGTTTTGTAATATTGGC+AGG + chr1_1:61995308-61995327 Msa0034110:intron 25.0%
! AAATGACAAACTTACCTTAA+TGG - chr1_1:61995418-61995437 None:intergenic 25.0%
!!! TTTTATTTAGCCGTGTTTAT+CGG + chr1_1:61995573-61995592 Msa0034110:intron 25.0%
! TAGTGTCAATTGAAAATTCA+AGG + chr1_1:61995630-61995649 Msa0034110:intron 25.0%
! CATAGAATTTACATAAAGGA+CGG - chr1_1:61995851-61995870 None:intergenic 25.0%
! TATAAAATGGATAAAGCAGT+GGG - chr1_1:61996036-61996055 None:intergenic 25.0%
! TTATAAAATGGATAAAGCAG+TGG - chr1_1:61996037-61996056 None:intergenic 25.0%
!! TCCCATTTTCTCTTATAAAA+TGG - chr1_1:61996049-61996068 None:intergenic 25.0%
! TACTAACTTACCACAAAATA+CGG - chr1_1:61996308-61996327 None:intergenic 25.0%
!!! ATACAAGTCTTATTTCTCAA+AGG - chr1_1:61996504-61996523 None:intergenic 25.0%
!!! TGACTATTGAATTTCTAGTA+TGG + chr1_1:61996630-61996649 Msa0034110:three_prime_UTR 25.0%
! AAAAACAATATATTGCACCA+TGG + chr1_1:61996793-61996812 Msa0034110:intron 25.0%
! ATTTCTCGAAGAAATGAAAA+TGG - chr1_1:61996837-61996856 None:intergenic 25.0%
! ATTGCTTTCATAAAAAACAC+AGG + chr1_1:61996855-61996874 Msa0034110:intron 25.0%
! AGTATCAGAGAAAGTAATAT+TGG + chr1_1:61996889-61996908 Msa0034110:three_prime_UTR 25.0%
!!! AATTTTTGGGAGATGAAAAT+GGG + chr1_1:61997368-61997387 Msa0034110:intron 25.0%
!! TTTAATGTTTTCATTGACGT+TGG + chr1_1:61997434-61997453 Msa0034110:intron 25.0%
! CCACCATTTATATTGTATAT+TGG - chr1_1:61997462-61997481 None:intergenic 25.0%
! CCAATATACAATATAAATGG+TGG + chr1_1:61997459-61997478 Msa0034110:intron 25.0%
!!! TTTCATTTTCAAGCAGTTAA+AGG + chr1_1:61997678-61997697 Msa0034110:intron 25.0%
! TAAGAAAACTACAATTGTAG+AGG + chr1_1:61997747-61997766 Msa0034110:three_prime_UTR 25.0%
!! TTCCCATTTTGTAAATCATA+AGG + chr1_1:61998425-61998444 Msa0034110:intron 25.0%
! TGCCTTATGATTTACAAAAT+GGG - chr1_1:61998430-61998449 None:intergenic 25.0%
! TAGGATTTATGGAGAAATAA+AGG - chr1_1:61998513-61998532 None:intergenic 25.0%
! TGAAATTGAAGCTAAAAAAG+AGG - chr1_1:61998545-61998564 None:intergenic 25.0%
! CTTGAATGCATGAATAATTA+TGG + chr1_1:61998574-61998593 Msa0034110:intron 25.0%
! TGAATGCATGAATAATTATG+GGG + chr1_1:61998576-61998595 Msa0034110:intron 25.0%
! TGAATAATTATGGGGAAAAA+AGG + chr1_1:61998584-61998603 Msa0034110:intron 25.0%
! ATATCTAGTTATATGCATGA+TGG + chr1_1:61998832-61998851 Msa0034110:three_prime_UTR 25.0%
!!! TTTCTGTTATTTTCTTTTGG+GGG + chr1_1:61999005-61999024 Msa0034110:intron 25.0%
! AAGATGAATCTGATGTAAAA+GGG - chr1_1:61999332-61999351 None:intergenic 25.0%
! AAAGATGAATCTGATGTAAA+AGG - chr1_1:61999333-61999352 None:intergenic 25.0%
! AAAATCAGAGATAAGATTAC+GGG - chr1_1:61999489-61999508 None:intergenic 25.0%
!!! ATAATAAAAAGGGTGTTGTT+TGG + chr1_1:61999538-61999557 Msa0034110:intron 25.0%
!!! TAATAAAAAGGGTGTTGTTT+GGG + chr1_1:61999539-61999558 Msa0034110:intron 25.0%
! CAAGGAAGTTTAAATATTCT+TGG + chr1_1:61999866-61999885 Msa0034110:three_prime_UTR 25.0%
!! CAATTCTTTTCCATATTGTT+GGG - chr1_1:61999906-61999925 None:intergenic 25.0%
! GCATATTTCTTAATTCTCAA+TGG + chr1_1:62000097-62000116 Msa0034110:intron 25.0%
! TAATAGTTCACAAATCAAGT+TGG - chr1_1:62000217-62000236 None:intergenic 25.0%
! GTTCAAAATCTTATCTAAAC+AGG - chr1_1:62000274-62000293 None:intergenic 25.0%
!!! GAAAAGAAGTATTGAATCAA+TGG - chr1_1:62000343-62000362 None:intergenic 25.0%
! ACACTTACATTACTTAAGTT+AGG - chr1_1:62000419-62000438 None:intergenic 25.0%
! GAATAATGAATTCCTAAATC+AGG - chr1_1:62000700-62000719 None:intergenic 25.0%
! AAAGAAAAAGATAGGCTAAT+GGG - chr1_1:62000841-62000860 None:intergenic 25.0%
! AAAAGAAAAAGATAGGCTAA+TGG - chr1_1:62000842-62000861 None:intergenic 25.0%
! TATTCATAATTAAACCCACT+TGG + chr1_1:62001013-62001032 Msa0034110:intron 25.0%
! ATTCATAATTAAACCCACTT+GGG + chr1_1:62001014-62001033 Msa0034110:intron 25.0%
! GATAACATATTGAAGTTACA+GGG - chr1_1:62001208-62001227 None:intergenic 25.0%
! TGATAACATATTGAAGTTAC+AGG - chr1_1:62001209-62001228 None:intergenic 25.0%
! TACAAAAATAGTTACAAGAC+AGG - chr1_1:62001261-62001280 None:intergenic 25.0%
! TAATGTAGGAAAGAGAAAAA+TGG - chr1_1:62001359-62001378 None:intergenic 25.0%
! AAAGATGATAGACATAATGT+AGG - chr1_1:62001373-62001392 None:intergenic 25.0%
!! CATTATGTCTATCATCTTTT+TGG + chr1_1:62001374-62001393 Msa0034110:intron 25.0%
!!! GACTGTTTTGATCTTAATTT+CGG + chr1_1:62001571-62001590 Msa0034110:intron 25.0%
! AACCATATCTAAAAGAAAAC+TGG - chr1_1:62001632-62001651 None:intergenic 25.0%
!! TTTTAGATATGGTTTGACAT+TGG + chr1_1:62001638-62001657 Msa0034110:intron 25.0%
! ATATTAAAAGTAGCTAGAGT+CGG - chr1_1:62001796-62001815 None:intergenic 25.0%
! AGATTATTGTTTCATGGTTA+AGG - chr1_1:62002122-62002141 None:intergenic 25.0%
!! TCTAACTTTTACGATTTACT+TGG + chr1_1:62002179-62002198 Msa0034110:intron 25.0%
!! TTTTATGTCAGATTATCTTG+GGG + chr1_1:62002456-62002475 Msa0034110:intron 25.0%
!!! AGGTAATCATTTTTGTTAAC+AGG - chr1_1:62002596-62002615 None:intergenic 25.0%
! GTTAACAAAAATGATTACCT+AGG + chr1_1:62002596-62002615 Msa0034110:three_prime_UTR 25.0%
! CACACTCATATAAAATACAA+GGG - chr1_1:62002788-62002807 None:intergenic 25.0%
! TCACACTCATATAAAATACA+AGG - chr1_1:62002789-62002808 None:intergenic 25.0%
!! GTTTGAAATCCAAATGTTAT+AGG - chr1_1:62002881-62002900 None:intergenic 25.0%
!! ATGTTTTCACAAAGTAAATG+GGG - chr1_1:62003068-62003087 None:intergenic 25.0%
!! GGTAAACTAACACATATTTT+AGG - chr1_1:62003106-62003125 None:intergenic 25.0%
!! ATTTTGCATTTCCATAAACA+AGG - chr1_1:62003246-62003265 None:intergenic 25.0%
!! GCAAAATAATTTTTCGCTTT+AGG + chr1_1:62003259-62003278 Msa0034110:intron 25.0%
!! TAGCTTTACTTGTTAACAAT+GGG - chr1_1:62003295-62003314 None:intergenic 25.0%
!!! TTAGCTTTACTTGTTAACAA+TGG - chr1_1:62003296-62003315 None:intergenic 25.0%
!!! AATGTTTTTGCAAAGTAAAC+AGG + chr1_1:62003349-62003368 Msa0034110:intron 25.0%
! TGCTAATATGCCTTAAATTA+TGG + chr1_1:62003780-62003799 Msa0034110:three_prime_UTR 25.0%
! GCTAATATGCCTTAAATTAT+GGG + chr1_1:62003781-62003800 Msa0034110:three_prime_UTR 25.0%
! GTACAGTGAGATAATAAAAT+GGG + chr1_1:62003808-62003827 Msa0034110:three_prime_UTR 25.0%
! TACAAACATGTTTGCTTATT+TGG + chr1_1:62003936-62003955 Msa0034110:three_prime_UTR 25.0%
! TTGCAACTGATTTATCTTGT+TGG - chr1_1:61995367-61995386 None:intergenic 30.0%
!! CTTAATGGATTGAATTCTCT+CGG - chr1_1:61995403-61995422 None:intergenic 30.0%
!! AATTTCTGTAGTTTGTTTGC+TGG + chr1_1:61995447-61995466 Msa0034110:intron 30.0%
!!! GGATGTTCTTTGTTTTTTCA+TGG + chr1_1:61995472-61995491 Msa0034110:intron 30.0%
!!! TGTTTTTTCATGGCTAATTC+TGG + chr1_1:61995482-61995501 Msa0034110:intron 30.0%
! ATCTGTTTGGTTGGTTATAT+GGG + chr1_1:61995531-61995550 Msa0034110:intron 30.0%
TAAAGTTCAACCGATAAACA+CGG - chr1_1:61995586-61995605 None:intergenic 30.0%
TTCAATTCTTTCCTCAAGAA+TGG + chr1_1:61995824-61995843 Msa0034110:intron 30.0%
CGTCCTTTATGTAAATTCTA+TGG + chr1_1:61995849-61995868 Msa0034110:intron 30.0%
!! TAAATTCTATGGTTTTACCC+AGG + chr1_1:61995860-61995879 Msa0034110:intron 30.0%
!! AAATTCTATGGTTTTACCCA+GGG + chr1_1:61995861-61995880 Msa0034110:intron 30.0%
AATATCCAAGATGTATATGG+TGG - chr1_1:61995963-61995982 None:intergenic 30.0%
TAATTGAAACACAGATCGAT+TGG - chr1_1:61996381-61996400 None:intergenic 30.0%
GATCTGTGTTTCAATTATTG+TGG + chr1_1:61996384-61996403 Msa0034110:three_prime_UTR 30.0%
TATTAAAAGTTGTGTGGTCA+TGG - chr1_1:61996533-61996552 None:intergenic 30.0%
ATCTGGTATTAAAAGTTGTG+TGG - chr1_1:61996539-61996558 None:intergenic 30.0%
!! AATTTCTAGTATGGCATTTG+AGG + chr1_1:61996639-61996658 Msa0034110:three_prime_UTR 30.0%
AATGTTGTTAGCAAGTATGT+TGG + chr1_1:61996688-61996707 Msa0034110:three_prime_UTR 30.0%
ATGTTGTTAGCAAGTATGTT+GGG + chr1_1:61996689-61996708 Msa0034110:three_prime_UTR 30.0%
TTCTGATAAAGAAATCTCCA+TGG - chr1_1:61996813-61996832 None:intergenic 30.0%
TTTCATAAAAAACACAGGAG+AGG + chr1_1:61996860-61996879 Msa0034110:intron 30.0%
TCAGAGAAAGTAATATTGGT+AGG + chr1_1:61996893-61996912 Msa0034110:three_prime_UTR 30.0%
AGAAAGTAATATTGGTAGGT+TGG + chr1_1:61996897-61996916 Msa0034110:three_prime_UTR 30.0%
! ATGATGATTTTGTACATACC+AGG - chr1_1:61997032-61997051 None:intergenic 30.0%
AAACAAAGAAGAATACCTGA+AGG - chr1_1:61997311-61997330 None:intergenic 30.0%
!! GAATTTTTGGGAGATGAAAA+TGG + chr1_1:61997367-61997386 Msa0034110:intron 30.0%
GAAAAAGTGAACTTGTAACT+GGG - chr1_1:61997601-61997620 None:intergenic 30.0%
TGAAAAAGTGAACTTGTAAC+TGG - chr1_1:61997602-61997621 None:intergenic 30.0%
! TTTTCAAAAGATTCAACTCC+CGG + chr1_1:61997712-61997731 Msa0034110:three_prime_UTR 30.0%
ACTCAGAAAACTTGAGTAAA+CGG + chr1_1:61997878-61997897 Msa0034110:three_prime_UTR 30.0%
TAATAGCAAGAGCTTACATT+TGG + chr1_1:61998014-61998033 Msa0034110:three_prime_UTR 30.0%
AAGTATAACTCTTTCTCTAG+AGG - chr1_1:61998138-61998157 None:intergenic 30.0%
AGAGAAAGAGTTATACTTGA+AGG + chr1_1:61998140-61998159 Msa0034110:three_prime_UTR 30.0%
GAGAAAGAGTTATACTTGAA+GGG + chr1_1:61998141-61998160 Msa0034110:three_prime_UTR 30.0%
GATTATGTTGAGAAATGCTA+GGG + chr1_1:61998217-61998236 Msa0034110:intron 30.0%
!! AATTTAGTTTGAACTGTGTG+TGG + chr1_1:61998248-61998267 Msa0034110:intron 30.0%
GATTATGTTGAGAAATGCTA+GGG + chr1_1:61998217-61998236 Msa0034110:intron 30.0%
!! AATTTAGTTTGAACTGTGTG+TGG + chr1_1:61998248-61998267 Msa0034110:intron 30.0%
CTGCCTTATGATTTACAAAA+TGG - chr1_1:61998431-61998450 None:intergenic 30.0%
AAAAAAGAGGATGGAATTGT+AGG - chr1_1:61998532-61998551 None:intergenic 30.0%
ATTGAAGCTAAAAAAGAGGA+TGG - chr1_1:61998541-61998560 None:intergenic 30.0%
ACTCTTTGTAGTAAACTATC+TGG + chr1_1:61998627-61998646 Msa0034110:intron 30.0%
AAATATTGTACTCCATGTAG+AGG + chr1_1:61998708-61998727 Msa0034110:intron 30.0%
!! TTATTTTCTTTTGGGGGTTT+GGG + chr1_1:61999011-61999030 Msa0034110:intron 30.0%
! TATTGTTATTATGCTTGGGA+TGG + chr1_1:61999167-61999186 Msa0034110:intron 30.0%
! ATTGTTATTATGCTTGGGAT+GGG + chr1_1:61999168-61999187 Msa0034110:intron 30.0%
! TTTTTCTTTTTCCTTACCTC+TGG + chr1_1:61999608-61999627 Msa0034110:intron 30.0%
AAGAACTCATTGTACAAAAC+AGG - chr1_1:61999667-61999686 None:intergenic 30.0%
ATAAGTTACTAGAAGTTGAG+AGG - chr1_1:61999737-61999756 None:intergenic 30.0%
!! TCGTTTTGAATGTGAATGTT+TGG + chr1_1:61999789-61999808 Msa0034110:intron 30.0%
! GCAATTCTTTTCCATATTGT+TGG - chr1_1:61999907-61999926 None:intergenic 30.0%
ATATGGAAAAGAATTGCTGA+TGG + chr1_1:61999910-61999929 Msa0034110:three_prime_UTR 30.0%
AAGGATTGTTCTTGTCTTAA+TGG + chr1_1:61999988-62000007 Msa0034110:three_prime_UTR 30.0%
ACATGCTGTGAAAAATATTG+TGG + chr1_1:62000015-62000034 Msa0034110:three_prime_UTR 30.0%
CATGCTGTGAAAAATATTGT+GGG + chr1_1:62000016-62000035 Msa0034110:three_prime_UTR 30.0%
! CTTTTGTAGCAATGTAATGA+AGG + chr1_1:62000066-62000085 Msa0034110:intron 30.0%
GTGAACTATTATCTTGACTT+AGG + chr1_1:62000226-62000245 Msa0034110:intron 30.0%
GACTTAGGTTTCTATAAAAC+AGG + chr1_1:62000241-62000260 Msa0034110:intron 30.0%
TAATAGTTCACAAATCACGT+TGG - chr1_1:62000395-62000414 None:intergenic 30.0%
TCTATTACATCACCTGATTT+AGG + chr1_1:62000685-62000704 Msa0034110:intron 30.0%
!!! TACAGGGTTTTAGATAAAGA+GGG - chr1_1:62001192-62001211 None:intergenic 30.0%
!!! TTACAGGGTTTTAGATAAAG+AGG - chr1_1:62001193-62001212 None:intergenic 30.0%
GAATAGAGTTTCATACTTTG+TGG - chr1_1:62001291-62001310 None:intergenic 30.0%
TATGAAACTCTATTCAGAGT+AGG + chr1_1:62001296-62001315 Msa0034110:intron 30.0%
AAATGGTTGGAATTTGAGTA+TGG - chr1_1:62001342-62001361 None:intergenic 30.0%
AACATGTCGAAATGATGATA+TGG - chr1_1:62001425-62001444 None:intergenic 30.0%
! TCTTAATTTCGGTTTTGCAT+AGG + chr1_1:62001582-62001601 Msa0034110:intron 30.0%
! CACCAGTTTTCTTTTAGATA+TGG + chr1_1:62001627-62001646 Msa0034110:intron 30.0%
!!! GTTTGACATTGGTTTTATTC+TGG + chr1_1:62001649-62001668 Msa0034110:intron 30.0%
AATCAAGACAAATTGCAGTT+GGG - chr1_1:62001756-62001775 None:intergenic 30.0%
GTTTATTTCCCTAATCGATT+AGG + chr1_1:62001978-62001997 Msa0034110:intron 30.0%
CTACATATCCTAATCGATTA+GGG - chr1_1:62001989-62002008 None:intergenic 30.0%
ACTACATATCCTAATCGATT+AGG - chr1_1:62001990-62002009 None:intergenic 30.0%
TATTGTTTCATGGTTAAGGA+AGG - chr1_1:62002118-62002137 None:intergenic 30.0%
AAGTGGAGATTATTGTTTCA+TGG - chr1_1:62002128-62002147 None:intergenic 30.0%
TCGTAAAAGTTAGACAAAAG+TGG - chr1_1:62002173-62002192 None:intergenic 30.0%
TTTACGATTTACTTGGACTT+TGG + chr1_1:62002186-62002205 Msa0034110:intron 30.0%
CAATGATTTAAGAAGGATAG+TGG - chr1_1:62002215-62002234 None:intergenic 30.0%
GCAATTGCAATGATTTAAGA+AGG - chr1_1:62002222-62002241 None:intergenic 30.0%
! ACAAAGAGTGTGATGTTTAT+AGG - chr1_1:62002244-62002263 None:intergenic 30.0%
! GCAATATGAGACTTCTTTTA+AGG + chr1_1:62002321-62002340 Msa0034110:three_prime_UTR 30.0%
! GTACTCATCACTTTGATTTA+CGG - chr1_1:62002402-62002421 None:intergenic 30.0%
TATAGATTGACAAAACCCAA+CGG - chr1_1:62002835-62002854 None:intergenic 30.0%
AATCCAGAAAATCAGATTGT+TGG + chr1_1:62003025-62003044 Msa0034110:intron 30.0%
ATCCAGAAAATCAGATTGTT+GGG + chr1_1:62003026-62003045 Msa0034110:intron 30.0%
! GTTAGTTTACCTTGTTAACA+AGG + chr1_1:62003115-62003134 Msa0034110:intron 30.0%
! CTATTTTCTCCTTGTTAACA+AGG - chr1_1:62003127-62003146 None:intergenic 30.0%
! AGCTAAAGATGAAGCATTTA+AGG + chr1_1:62003190-62003209 Msa0034110:intron 30.0%
!! TTTGACGTTTTCCTTGTTTA+TGG + chr1_1:62003232-62003251 Msa0034110:intron 30.0%
CTCTTCTATGATTATTGCTA+TGG + chr1_1:62003520-62003539 Msa0034110:three_prime_UTR 30.0%
! AATTTCAGTTTCCTTTTCAG+TGG - chr1_1:62003750-62003769 None:intergenic 30.0%
ATATGCCTTAAATTATGGGT+AGG + chr1_1:62003785-62003804 Msa0034110:three_prime_UTR 30.0%
TATGCCTTAAATTATGGGTA+GGG + chr1_1:62003786-62003805 Msa0034110:three_prime_UTR 30.0%
GGTACAGTGAGATAATAAAA+TGG + chr1_1:62003807-62003826 Msa0034110:three_prime_UTR 30.0%
TGTTTGTAGAATAATGTGCT+GGG - chr1_1:62003924-62003943 None:intergenic 30.0%
ATGTTTGTAGAATAATGTGC+TGG - chr1_1:62003925-62003944 None:intergenic 30.0%
CTGATTTATCTTGTTGGACA+AGG - chr1_1:61995361-61995380 None:intergenic 35.0%
CGAGAGAATTCAATCCATTA+AGG + chr1_1:61995401-61995420 Msa0034110:CDS 35.0%
CATAGTTGTTCTGATCTGTT+TGG + chr1_1:61995518-61995537 Msa0034110:intron 35.0%
! GATCTGTTTGGTTGGTTATA+TGG + chr1_1:61995530-61995549 Msa0034110:intron 35.0%
! TTCTCTAGGAAAAACTTCAG+AGG + chr1_1:61995712-61995731 Msa0034110:intron 35.0%
GATTACCACCATATACATCT+TGG + chr1_1:61995955-61995974 Msa0034110:CDS 35.0%
!!! CATCTTGGATATTTTTGGAC+AGG + chr1_1:61995970-61995989 Msa0034110:CDS 35.0%
TAAAATCTTTCACACGCATC+AGG + chr1_1:61996133-61996152 Msa0034110:intron 35.0%
AATCAGTTGTTGGAAGAAGA+CGG + chr1_1:61996178-61996197 Msa0034110:CDS 35.0%
GAAGAATTAACAGAACCTGA+CGG + chr1_1:61996252-61996271 Msa0034110:CDS 35.0%
! AATTCATGTTTTTCACCGTC+AGG - chr1_1:61996270-61996289 None:intergenic 35.0%
TTGAATGAAGTTGGGATTCA+TGG - chr1_1:61996575-61996594 None:intergenic 35.0%
CTGAACGTTTGAATGAAGTT+GGG - chr1_1:61996583-61996602 None:intergenic 35.0%
TGTTGTTAGCAAGTATGTTG+GGG + chr1_1:61996690-61996709 Msa0034110:three_prime_UTR 35.0%
GATTACCTGGATTTCTAAAC+TGG - chr1_1:61996719-61996738 None:intergenic 35.0%
ACAAGTTATTCTGGATTACC+TGG - chr1_1:61996732-61996751 None:intergenic 35.0%
AGGTAATCCAGAATAACTTG+TGG + chr1_1:61996731-61996750 Msa0034110:intron 35.0%
! GGTAATCCAGAATAACTTGT+GGG + chr1_1:61996732-61996751 Msa0034110:intron 35.0%
TTCTCTAGATACATGCTCAT+AGG - chr1_1:61996958-61996977 None:intergenic 35.0%
ACGACAGAAAAGGTTATCAA+GGG - chr1_1:61997004-61997023 None:intergenic 35.0%
!! TTGATAACCTTTTCTGTCGT+CGG + chr1_1:61997004-61997023 Msa0034110:three_prime_UTR 35.0%
AACCTTTGATATATCCCGTA+AGG + chr1_1:61997147-61997166 Msa0034110:intron 35.0%
TTCCTTACGGGATATATCAA+AGG - chr1_1:61997152-61997171 None:intergenic 35.0%
AGAGTGAAAAGAAGACAGTT+TGG + chr1_1:61997241-61997260 Msa0034110:intron 35.0%
TTTCAAAAGATTCAACTCCC+GGG + chr1_1:61997713-61997732 Msa0034110:three_prime_UTR 35.0%
CCATGACAATCAATTCTTGT+CGG - chr1_1:61997835-61997854 None:intergenic 35.0%
! TACTCAAGTTTTCTGAGTCA+GGG - chr1_1:61997876-61997895 None:intergenic 35.0%
! TTACTCAAGTTTTCTGAGTC+AGG - chr1_1:61997877-61997896 None:intergenic 35.0%
TTACAAGAATCCTGAGAATC+AGG - chr1_1:61997952-61997971 None:intergenic 35.0%
GAATTCTTGGTTTCTCAGAT+TGG + chr1_1:61998109-61998128 Msa0034110:three_prime_UTR 35.0%
TTTCTCAACATAATCCTGTG+AGG - chr1_1:61998212-61998231 None:intergenic 35.0%
GGATTATGTTGAGAAATGCT+AGG + chr1_1:61998216-61998235 Msa0034110:intron 35.0%
GTGAACACAGAAAGATACAT+GGG - chr1_1:61998310-61998329 None:intergenic 35.0%
TTTCTCAACATAATCCTGTG+AGG - chr1_1:61998212-61998231 None:intergenic 35.0%
GGATTATGTTGAGAAATGCT+AGG + chr1_1:61998216-61998235 Msa0034110:intron 35.0%
GGATGGAATTGTAGGATTTA+TGG - chr1_1:61998524-61998543 None:intergenic 35.0%
TTCATTCGCTTATGAACCAT+TGG - chr1_1:61998660-61998679 None:intergenic 35.0%
AGCAAATTAAGACCTCTACA+TGG - chr1_1:61998723-61998742 None:intergenic 35.0%
AAAGTAAGTTCCTAGCTATG+AGG - chr1_1:61998789-61998808 None:intergenic 35.0%
ATAGCTAGGAACTTACTTTC+TGG + chr1_1:61998790-61998809 Msa0034110:three_prime_UTR 35.0%
TCTAGTTATATGCATGATGG+AGG + chr1_1:61998835-61998854 Msa0034110:three_prime_UTR 35.0%
AGCTGAAATAATAGACCTGT+GGG - chr1_1:61998872-61998891 None:intergenic 35.0%
! TATTTCAGCTGGTTCAATCA+TGG + chr1_1:61998882-61998901 Msa0034110:three_prime_UTR 35.0%
AAAATTTGACACAGAGTGCA+CGG + chr1_1:61998915-61998934 Msa0034110:three_prime_UTR 35.0%
!! GTTATTTTCTTTTGGGGGTT+TGG + chr1_1:61999010-61999029 Msa0034110:intron 35.0%
!! TATTTTCTTTTGGGGGTTTG+GGG + chr1_1:61999012-61999031 Msa0034110:intron 35.0%
GAAATTGTATGTCAATCGTC+TGG + chr1_1:61999118-61999137 Msa0034110:intron 35.0%
TGAATCTGATGTAAAAGGGA+TGG - chr1_1:61999328-61999347 None:intergenic 35.0%
AAGTGCAGAAACTAAAGTGT+GGG - chr1_1:61999385-61999404 None:intergenic 35.0%
AAAGTGCAGAAACTAAAGTG+TGG - chr1_1:61999386-61999405 None:intergenic 35.0%
!!! CTCTGGTTTTTTGTAGCATT+GGG + chr1_1:61999625-61999644 Msa0034110:intron 35.0%
TGTACAAAACAGGAGGATTA+GGG - chr1_1:61999657-61999676 None:intergenic 35.0%
TTGTACAAAACAGGAGGATT+AGG - chr1_1:61999658-61999677 None:intergenic 35.0%
AACTCATTGTACAAAACAGG+AGG - chr1_1:61999664-61999683 None:intergenic 35.0%
TTTGTGGCAAGTAAAGAGTA+GGG - chr1_1:61999767-61999786 None:intergenic 35.0%
! TTTTGTGGCAAGTAAAGAGT+AGG - chr1_1:61999768-61999787 None:intergenic 35.0%
! CACATTCAAAACGACTTTTG+TGG - chr1_1:61999783-61999802 None:intergenic 35.0%
TGAGAAAAAGAGGCAAAACA+AGG + chr1_1:61999848-61999867 Msa0034110:three_prime_UTR 35.0%
AAATATTCTTGGAAGTCTGC+TGG + chr1_1:61999877-61999896 Msa0034110:three_prime_UTR 35.0%
GATTGTTCTTGTCTTAATGG+TGG + chr1_1:61999991-62000010 Msa0034110:three_prime_UTR 35.0%
TTATTCAAACGACCAACACA+CGG - chr1_1:62000123-62000142 None:intergenic 35.0%
ATGTAATTCAAAACCCGAAG+AGG - chr1_1:62000657-62000676 None:intergenic 35.0%
TAGATGCTCTCCAATTATTG+GGG - chr1_1:62000739-62000758 None:intergenic 35.0%
GTAGATGCTCTCCAATTATT+GGG - chr1_1:62000740-62000759 None:intergenic 35.0%
AGTAGATGCTCTCCAATTAT+TGG - chr1_1:62000741-62000760 None:intergenic 35.0%
ATAATTAAACCCACTTGGGT+TGG + chr1_1:62001018-62001037 Msa0034110:intron 35.0%
AATAGTTACAAGACAGGTCA+GGG - chr1_1:62001255-62001274 None:intergenic 35.0%
AAATAGTTACAAGACAGGTC+AGG - chr1_1:62001256-62001275 None:intergenic 35.0%
GTAGGAAAGAGAAAAATGGT+TGG - chr1_1:62001355-62001374 None:intergenic 35.0%
ATGTCGAAATGATGATATGG+AGG - chr1_1:62001422-62001441 None:intergenic 35.0%
AACAAACCAGAAAGACTACA+AGG - chr1_1:62001503-62001522 None:intergenic 35.0%
CAAAAAAGATCACACAACTG+TGG - chr1_1:62001534-62001553 None:intergenic 35.0%
!!! CACAGTTGTGTGATCTTTTT+TGG + chr1_1:62001532-62001551 Msa0034110:intron 35.0%
!!! TTGTGTGATCTTTTTTGGCT+TGG + chr1_1:62001537-62001556 Msa0034110:intron 35.0%
!! GTTTTGCATAGGTTTTGTCT+CGG + chr1_1:62001593-62001612 Msa0034110:intron 35.0%
! TTTTTCCTCCAATTGCAGTA+TGG + chr1_1:62001717-62001736 Msa0034110:intron 35.0%
GAATCAAGACAAATTGCAGT+TGG - chr1_1:62001757-62001776 None:intergenic 35.0%
ACTACAAGATAAAGGTGAAG+TGG - chr1_1:62002145-62002164 None:intergenic 35.0%
! TGGTGTCAACTACAAGATAA+AGG - chr1_1:62002153-62002172 None:intergenic 35.0%
!!! TTCTTTTAAGGCAACAACAG+AGG + chr1_1:62002333-62002352 Msa0034110:three_prime_UTR 35.0%
!!! TCTTTTAAGGCAACAACAGA+GGG + chr1_1:62002334-62002353 Msa0034110:three_prime_UTR 35.0%
! ATCACTTTGATTTACGGCAA+TGG - chr1_1:62002396-62002415 None:intergenic 35.0%
AGAGACAAATCACATGCATT+AGG - chr1_1:62002424-62002443 None:intergenic 35.0%
ATACCCTCACATTTCTTTCT+TGG + chr1_1:62002852-62002871 Msa0034110:intron 35.0%
TTGCCAAGAAAGAAATGTGA+GGG - chr1_1:62002858-62002877 None:intergenic 35.0%
TCTTGGCAACCTATAACATT+TGG + chr1_1:62002869-62002888 Msa0034110:intron 35.0%
GATAAGCATCAAGAACATAC+TGG - chr1_1:62002943-62002962 None:intergenic 35.0%
GTTCTTGATGCTTATCGTAA+AGG + chr1_1:62002947-62002966 Msa0034110:three_prime_UTR 35.0%
! GTAAACAGGTCCTTACATTT+TGG + chr1_1:62003363-62003382 Msa0034110:intron 35.0%
GCTACAAAGTCCAAAATGTA+AGG - chr1_1:62003376-62003395 None:intergenic 35.0%
TGTCTCTGTTGAGAATATAC+TGG - chr1_1:62003690-62003709 None:intergenic 35.0%
TGTACCCTACCCATAATTTA+AGG - chr1_1:62003793-62003812 None:intergenic 35.0%
AAGGTTCCCACATCATCATT+TGG - chr1_1:61995342-61995361 None:intergenic 40.0%
TCAGTTGCAAAAGCAAATCC+AGG + chr1_1:61995377-61995396 Msa0034110:CDS 40.0%
GTTGTTCTGATCTGTTTGGT+TGG + chr1_1:61995522-61995541 Msa0034110:intron 40.0%
!! GGTTATATGGGTGTCACTTT+CGG + chr1_1:61995543-61995562 Msa0034110:intron 40.0%
TAATTGCAAGTGATCCAGCA+TGG - chr1_1:61995679-61995698 None:intergenic 40.0%
TATGACATTGCAGCTTCTTC+TGG - chr1_1:61995740-61995759 None:intergenic 40.0%
AAGCTGCAATGTCATACTTC+AGG + chr1_1:61995744-61995763 Msa0034110:intron 40.0%
TAATGTCAGCAGTATCAACC+AGG + chr1_1:61995769-61995788 Msa0034110:intron 40.0%
AATGTCAGCAGTATCAACCA+GGG + chr1_1:61995770-61995789 Msa0034110:intron 40.0%
AAGCATCAAGATTCCACGTA+TGG + chr1_1:61995929-61995948 Msa0034110:CDS 40.0%
CGGATCTATTATGATCAACG+TGG + chr1_1:61996198-61996217 Msa0034110:CDS 40.0%
TTATGATCAACGTGGAAGTG+AGG + chr1_1:61996206-61996225 Msa0034110:CDS 40.0%
ATTGATATGCAGTGACAGTG+AGG + chr1_1:61996230-61996249 Msa0034110:CDS 40.0%
! ATGCTGAAGACCGTATTTTG+TGG + chr1_1:61996295-61996314 Msa0034110:CDS 40.0%
GAGTCATATAGATGCTCTGT+TGG + chr1_1:61996453-61996472 Msa0034110:three_prime_UTR 40.0%
!! AGTCTTATTTCTCAAAGGCG+TGG - chr1_1:61996499-61996518 None:intergenic 40.0%
GCTGAACGTTTGAATGAAGT+TGG - chr1_1:61996584-61996603 None:intergenic 40.0%
AGTATGGCATTTGAGGAACA+CGG + chr1_1:61996646-61996665 Msa0034110:three_prime_UTR 40.0%
GTTGTTAGCAAGTATGTTGG+GGG + chr1_1:61996691-61996710 Msa0034110:three_prime_UTR 40.0%
GTCATTCCCACAAGTTATTC+TGG - chr1_1:61996741-61996760 None:intergenic 40.0%
! TCATGTTCTCCTGAGCTTTT+AGG - chr1_1:61996931-61996950 None:intergenic 40.0%
GACGACAGAAAAGGTTATCA+AGG - chr1_1:61997005-61997024 None:intergenic 40.0%
TATACCTTTCTGCTTTCCTG+CGG + chr1_1:61997090-61997109 Msa0034110:intron 40.0%
!! ATTTTTGACTGTCGACTGCA+TGG + chr1_1:61997116-61997135 Msa0034110:three_prime_UTR 40.0%
!! ACATAGGGCATTGTTCCTTA+CGG - chr1_1:61997165-61997184 None:intergenic 40.0%
! CATGGTTTTCTATCACCTAC+AGG - chr1_1:61997273-61997292 None:intergenic 40.0%
GTAGGTGATAGAAAACCATG+TGG + chr1_1:61997273-61997292 Msa0034110:three_prime_UTR 40.0%
ATAGTATGCACGCAGAAAAG+TGG - chr1_1:61997570-61997589 None:intergenic 40.0%
TTTCTTATCCCGAAAAGACC+CGG - chr1_1:61997734-61997753 None:intergenic 40.0%
ACAATTGTAGAGGAGACAGA+TGG + chr1_1:61997757-61997776 Msa0034110:three_prime_UTR 40.0%
CAATTGTAGAGGAGACAGAT+GGG + chr1_1:61997758-61997777 Msa0034110:three_prime_UTR 40.0%
CCGACAAGAATTGATTGTCA+TGG + chr1_1:61997832-61997851 Msa0034110:three_prime_UTR 40.0%
AGCAAGAGCTTACATTTGGA+TGG + chr1_1:61998018-61998037 Msa0034110:three_prime_UTR 40.0%
! GTCTCATTTGTGACAGCTTT+TGG - chr1_1:61998045-61998064 None:intergenic 40.0%
! TCAATGGAAGAACGAGTTGA+TGG + chr1_1:61998087-61998106 Msa0034110:three_prime_UTR 40.0%
!! GAACGAGTTGATGGAATTCT+TGG + chr1_1:61998096-61998115 Msa0034110:three_prime_UTR 40.0%
AGAGTTATACTTGAAGGGAG+TGG + chr1_1:61998146-61998165 Msa0034110:three_prime_UTR 40.0%
TTGAAGGGAGTGGAAATGTT+TGG + chr1_1:61998156-61998175 Msa0034110:three_prime_UTR 40.0%
TGGAAATGTTTGGCAGAAAC+AGG + chr1_1:61998166-61998185 Msa0034110:three_prime_UTR 40.0%
TATGTTGAGAAATGCTAGGG+TGG + chr1_1:61998220-61998239 Msa0034110:intron 40.0%
GGTGAACACAGAAAGATACA+TGG - chr1_1:61998311-61998330 None:intergenic 40.0%
TATGTTGAGAAATGCTAGGG+TGG + chr1_1:61998220-61998239 Msa0034110:intron 40.0%
! ACTATCTGGAATGTGACCAA+TGG + chr1_1:61998641-61998660 Msa0034110:intron 40.0%
GCTGAAATAATAGACCTGTG+GGG - chr1_1:61998871-61998890 None:intergenic 40.0%
CAGCTGAAATAATAGACCTG+TGG - chr1_1:61998873-61998892 None:intergenic 40.0%
CACAGGTCTATTATTTCAGC+TGG + chr1_1:61998871-61998890 Msa0034110:three_prime_UTR 40.0%
GAGAATGCAGGGTAAAAGAT+GGG - chr1_1:61998963-61998982 None:intergenic 40.0%
TGAGAATGCAGGGTAAAAGA+TGG - chr1_1:61998964-61998983 None:intergenic 40.0%
CAACAAGACATGAGAATGCA+GGG - chr1_1:61998974-61998993 None:intergenic 40.0%
ACAACAAGACATGAGAATGC+AGG - chr1_1:61998975-61998994 None:intergenic 40.0%
! ACTCGGTGGTATAACACATA+AGG + chr1_1:61999096-61999115 Msa0034110:intron 40.0%
TGTATGTCAATCGTCTGGTT+AGG + chr1_1:61999123-61999142 Msa0034110:intron 40.0%
AGGGATGGAGTGATTTACAT+GGG - chr1_1:61999313-61999332 None:intergenic 40.0%
AAGGGATGGAGTGATTTACA+TGG - chr1_1:61999314-61999333 None:intergenic 40.0%
GTTTCTGCACTTTCCAATCA+AGG + chr1_1:61999393-61999412 Msa0034110:intron 40.0%
CCTTATGAGTGCATTCTTGA+AGG - chr1_1:61999419-61999438 None:intergenic 40.0%
CCTTCAAGAATGCACTCATA+AGG + chr1_1:61999416-61999435 Msa0034110:intron 40.0%
GCTACAAAAAACCAGAGGTA+AGG - chr1_1:61999622-61999641 None:intergenic 40.0%
CCAATGCTACAAAAAACCAG+AGG - chr1_1:61999627-61999646 None:intergenic 40.0%
!!! CCTCTGGTTTTTTGTAGCAT+TGG + chr1_1:61999624-61999643 Msa0034110:intron 40.0%
TGAATGTGAATGTTTGGCCT+AGG + chr1_1:61999795-61999814 Msa0034110:intron 40.0%
GAGTATACTGCATGCAAGAT+TGG - chr1_1:61999942-61999961 None:intergenic 40.0%
GTGTCAATCAATGTGTGGAA+AGG + chr1_1:61999969-61999988 Msa0034110:three_prime_UTR 40.0%
!! TACATTGACTCTTGGCACAA+TGG - chr1_1:62000521-62000540 None:intergenic 40.0%
!! TCGACTTCTACATTGACTCT+TGG - chr1_1:62000529-62000548 None:intergenic 40.0%
AGATGTCTGTCGAAACTGTT+GGG + chr1_1:62000587-62000606 Msa0034110:three_prime_UTR 40.0%
AACCTGATGTTATGCCTCTT+CGG + chr1_1:62000640-62000659 Msa0034110:intron 40.0%
ATTCTCCCCAGTGTCAATTT+CGG + chr1_1:62001097-62001116 Msa0034110:intron 40.0%
!!! GGGTTTTAGATAAAGAGGGA+AGG - chr1_1:62001188-62001207 None:intergenic 40.0%
TCGAAATGATGATATGGAGG+AGG - chr1_1:62001419-62001438 None:intergenic 40.0%
AAACCAGAAAGACTACAAGG+TGG - chr1_1:62001500-62001519 None:intergenic 40.0%
!! GAAGTCTGATGTTTCTGGAT+GGG + chr1_1:62002478-62002497 Msa0034110:three_prime_UTR 40.0%
!! AAGTCTGATGTTTCTGGATG+GGG + chr1_1:62002479-62002498 Msa0034110:three_prime_UTR 40.0%
! TGATTACCTAGGAGAGTACA+CGG + chr1_1:62002607-62002626 Msa0034110:three_prime_UTR 40.0%
CCTGCTCATTCAAATCGAAA+AGG - chr1_1:62002700-62002719 None:intergenic 40.0%
!! CCTTTTCGATTTGAATGAGC+AGG + chr1_1:62002697-62002716 Msa0034110:three_prime_UTR 40.0%
TGTTTCGCTGTATTTCCGTT+GGG + chr1_1:62002817-62002836 Msa0034110:intron 40.0%
GTTGCCAAGAAAGAAATGTG+AGG - chr1_1:62002859-62002878 None:intergenic 40.0%
TTCACCTTTGCATAGCAGTT+GGG - chr1_1:62003007-62003026 None:intergenic 40.0%
ATTCACCTTTGCATAGCAGT+TGG - chr1_1:62003008-62003027 None:intergenic 40.0%
! CTCCCAACAATCTGATTTTC+TGG - chr1_1:62003031-62003050 None:intergenic 40.0%
CAGAAAATCAGATTGTTGGG+AGG + chr1_1:62003029-62003048 Msa0034110:intron 40.0%
ACTGCTGCTATAGGTAATGT+TGG + chr1_1:62003438-62003457 Msa0034110:intron 40.0%
! CTATAGGTAATGTTGGTTGC+TGG + chr1_1:62003445-62003464 Msa0034110:intron 40.0%
!! AATTGCTGATTCGTCTCTCT+TGG - chr1_1:62003587-62003606 None:intergenic 40.0%
TGTTTCTTTGCTCTACCTTG+TGG - chr1_1:62003610-62003629 None:intergenic 40.0%
AGTTTGTACAAGCTGGACAT+TGG - chr1_1:62003656-62003675 None:intergenic 40.0%
ACAAACTCGTGACATCTCAT+GGG + chr1_1:62003707-62003726 Msa0034110:three_prime_UTR 40.0%
! CTAGAAATTAGCCTAGCAGT+TGG + chr1_1:62003867-62003886 Msa0034110:three_prime_UTR 40.0%
GTTCCCACATCATCATTTGG+CGG - chr1_1:61995339-61995358 None:intergenic 45.0%
!! TCTGTAGTTTGTTTGCTGGC+AGG + chr1_1:61995451-61995470 Msa0034110:intron 45.0%
! CTTCTTTTTGCACACCATGC+TGG + chr1_1:61995662-61995681 Msa0034110:intron 45.0%
TAAAGGACGGTCCATTCTTG+AGG - chr1_1:61995838-61995857 None:intergenic 45.0%
ATGACATGTCTTGATTGCCC+TGG - chr1_1:61995902-61995921 None:intergenic 45.0%
GGTGGTAATCTTTCCATACG+TGG - chr1_1:61995945-61995964 None:intergenic 45.0%
AGCAGTGGGTAACTCAACAT+AGG - chr1_1:61996022-61996041 None:intergenic 45.0%
ACGCATCAGGAATCAGAGAA+TGG + chr1_1:61996146-61996165 Msa0034110:intron 45.0%
GCTGACGATCAATCAGTTGT+TGG + chr1_1:61996168-61996187 Msa0034110:CDS 45.0%
ATGCTCTGTTGGAGCAAACA+CGG + chr1_1:61996464-61996483 Msa0034110:three_prime_UTR 45.0%
GTATGGCATTTGAGGAACAC+GGG + chr1_1:61996647-61996666 Msa0034110:three_prime_UTR 45.0%
! TGAGGAACACGGGTTAAATG+AGG + chr1_1:61996657-61996676 Msa0034110:three_prime_UTR 45.0%
GGGAATCTAATGCATCACTC+AGG - chr1_1:61996984-61997003 None:intergenic 45.0%
!! CATAGGGCATTGTTCCTTAC+GGG - chr1_1:61997164-61997183 None:intergenic 45.0%
! TTGAGGTGGGCGAGAATTTT+TGG + chr1_1:61997354-61997373 Msa0034110:intron 45.0%
! TGAGGTGGGCGAGAATTTTT+GGG + chr1_1:61997355-61997374 Msa0034110:intron 45.0%
! ATTCAACTCCCGGGTCTTTT+CGG + chr1_1:61997722-61997741 Msa0034110:three_prime_UTR 45.0%
TTCTTATCCCGAAAAGACCC+GGG - chr1_1:61997733-61997752 None:intergenic 45.0%
AGTCACAAATCAGTCCGACA+CGG + chr1_1:61997903-61997922 Msa0034110:three_prime_UTR 45.0%
AAGATCGCTTCCTGATTCTC+AGG + chr1_1:61997939-61997958 Msa0034110:three_prime_UTR 45.0%
TCTTTCTGTGTTCTCCTCAC+AGG + chr1_1:61998195-61998214 Msa0034110:intron 45.0%
TCTTTCTGTGTTCACCTCAC+AGG + chr1_1:61998315-61998334 Msa0034110:intron 45.0%
!! TTCTGGTTCGAAGACTTGCA+TGG + chr1_1:61998807-61998826 Msa0034110:three_prime_UTR 45.0%
GGTTCAATCATGGACGACAA+AGG + chr1_1:61998892-61998911 Msa0034110:three_prime_UTR 45.0%
CAGGGTAAAAGATGGGAACA+GGG - chr1_1:61998956-61998975 None:intergenic 45.0%
ATGTACGAAAAGGCCTCACT+CGG + chr1_1:61999079-61999098 Msa0034110:intron 45.0%
ATGTGTTATACCACCGAGTG+AGG - chr1_1:61999095-61999114 None:intergenic 45.0%
GAGCATAATGCTCCAAGCTA+TGG + chr1_1:61999235-61999254 Msa0034110:intron 45.0%
CATAATGCTCCAAGCTATGG+AGG + chr1_1:61999238-61999257 Msa0034110:intron 45.0%
AAGAGAGATCCTCCATAGCT+TGG - chr1_1:61999250-61999269 None:intergenic 45.0%
GGGATGGAGTGATTTACATG+GGG - chr1_1:61999312-61999331 None:intergenic 45.0%
GCATTCTTGAAGGCCTTGAT+TGG - chr1_1:61999409-61999428 None:intergenic 45.0%
AGAATGCACTCATAAGGCCT+TGG + chr1_1:61999422-61999441 Msa0034110:intron 45.0%
GAATGCACTCATAAGGCCTT+GGG + chr1_1:61999423-61999442 Msa0034110:intron 45.0%
ACTCATAAGGCCTTGGGTTT+GGG + chr1_1:61999429-61999448 Msa0034110:intron 45.0%
!! TTGGCTAATGCAGAGGCATT+TGG + chr1_1:61999454-61999473 Msa0034110:intron 45.0%
!! TGGCTAATGCAGAGGCATTT+GGG + chr1_1:61999455-61999474 Msa0034110:intron 45.0%
! CCTCTTTTTCTCAGCAACCT+CGG - chr1_1:61999841-61999860 None:intergenic 45.0%
TGCATGCAGTATACTCCATG+TGG + chr1_1:61999946-61999965 Msa0034110:three_prime_UTR 45.0%
GCATGCAGTATACTCCATGT+GGG + chr1_1:61999947-61999966 Msa0034110:three_prime_UTR 45.0%
! CACATTGATTGACACCCACA+TGG - chr1_1:61999964-61999983 None:intergenic 45.0%
TGTGGGTGTCAATCAATGTG+TGG + chr1_1:61999964-61999983 Msa0034110:three_prime_UTR 45.0%
AATTCTCAATGGCCGTGTGT+TGG + chr1_1:62000108-62000127 Msa0034110:intron 45.0%
CTCTTCGAACAACTGAAGGT+AGG - chr1_1:62000474-62000493 None:intergenic 45.0%
! AATGCCCATGTTTTGCTGCT+GGG + chr1_1:62000550-62000569 Msa0034110:three_prime_UTR 45.0%
CAACAGTTTCGACAGACATC+TGG - chr1_1:62000588-62000607 None:intergenic 45.0%
CAGATGTCTGTCGAAACTGT+TGG + chr1_1:62000586-62000605 Msa0034110:three_prime_UTR 45.0%
TCTGTCGAAACTGTTGGGTT+AGG + chr1_1:62000592-62000611 Msa0034110:three_prime_UTR 45.0%
ACCTGATGTTATGCCTCTTC+GGG + chr1_1:62000641-62000660 Msa0034110:intron 45.0%
GTGAGCAGCAATCTTCAATG+AGG - chr1_1:62000814-62000833 None:intergenic 45.0%
!! TCAATTTCGGTGGGCTAGTT+CGG + chr1_1:62001110-62001129 Msa0034110:intron 45.0%
AGGAGAAGATCTAAACACGC+CGG - chr1_1:62001477-62001496 None:intergenic 45.0%
!! CATAGGTTTTGTCTCGGTTG+TGG + chr1_1:62001599-62001618 Msa0034110:intron 45.0%
TGCAGTTGGGACAAAAGCTA+GGG - chr1_1:62001743-62001762 None:intergenic 45.0%
TTGCAGTTGGGACAAAAGCT+AGG - chr1_1:62001744-62001763 None:intergenic 45.0%
TCACACTCTTTGTACAGCTG+TGG + chr1_1:62002251-62002270 Msa0034110:intron 45.0%
CACACTCTTTGTACAGCTGT+GGG + chr1_1:62002252-62002271 Msa0034110:intron 45.0%
ACACTCTTTGTACAGCTGTG+GGG + chr1_1:62002253-62002272 Msa0034110:intron 45.0%
TTGGGGAAGTCTGATGTTTC+TGG + chr1_1:62002473-62002492 Msa0034110:three_prime_UTR 45.0%
!! GGAAGTCTGATGTTTCTGGA+TGG + chr1_1:62002477-62002496 Msa0034110:three_prime_UTR 45.0%
! GATTACCTAGGAGAGTACAC+GGG + chr1_1:62002608-62002627 Msa0034110:three_prime_UTR 45.0%
ACAGAGAAGCTGATAAGCGT+GGG + chr1_1:62002645-62002664 Msa0034110:three_prime_UTR 45.0%
CTGTTTCGCTGTATTTCCGT+TGG + chr1_1:62002816-62002835 Msa0034110:intron 45.0%
AAACCCCAACTGCTATGCAA+AGG + chr1_1:62003000-62003019 Msa0034110:three_prime_UTR 45.0%
TCACCTTTGCATAGCAGTTG+GGG - chr1_1:62003006-62003025 None:intergenic 45.0%
AAAGTGAGTGATTGCGACAG+AGG + chr1_1:62003153-62003172 Msa0034110:intron 45.0%
AAGTGAGTGATTGCGACAGA+GGG + chr1_1:62003154-62003173 Msa0034110:intron 45.0%
ATCATAGAAGAGCTCCTCAC+CGG - chr1_1:62003512-62003531 None:intergenic 45.0%
GACGAATCAGCAATTCCACA+AGG + chr1_1:62003592-62003611 Msa0034110:three_prime_UTR 45.0%
ATTGGCCATGGCTCATCAAT+GGG - chr1_1:62003638-62003657 None:intergenic 45.0%
GTCCAGCTTGTACAAACTTG+AGG + chr1_1:62003658-62003677 Msa0034110:three_prime_UTR 45.0%
AGCCTCAAGTTTGTACAAGC+TGG - chr1_1:62003663-62003682 None:intergenic 45.0%
GACAAACTCGTGACATCTCA+TGG + chr1_1:62003706-62003725 Msa0034110:three_prime_UTR 45.0%
TTGAGCAACTGCCACTGAAA+AGG + chr1_1:62003736-62003755 Msa0034110:three_prime_UTR 45.0%
TACTCAGGATACCAACTGCT+AGG - chr1_1:62003881-62003900 None:intergenic 45.0%
TAATGTGCTGGGCATCCAAA+AGG - chr1_1:62003913-62003932 None:intergenic 45.0%
! AGAGCCGCCAAATGATGATG+TGG + chr1_1:61995332-61995351 Msa0034110:CDS 50.0%
! GAGCCGCCAAATGATGATGT+GGG + chr1_1:61995333-61995352 Msa0034110:CDS 50.0%
TGGATTGAATTCTCTCGGCC+TGG - chr1_1:61995398-61995417 None:intergenic 50.0%
AACCAGGGACTCTTCACAGA+CGG + chr1_1:61995785-61995804 Msa0034110:intron 50.0%
!! TATGGTTTTACCCAGGGTCC+AGG + chr1_1:61995867-61995886 Msa0034110:intron 50.0%
! GGAACACGGGTTAAATGAGG+AGG + chr1_1:61996660-61996679 Msa0034110:three_prime_UTR 50.0%
GGGCACCAGTTTAGAAATCC+AGG + chr1_1:61996711-61996730 Msa0034110:three_prime_UTR 50.0%
GACCAGCATCCTAAAAGCTC+AGG + chr1_1:61996919-61996938 Msa0034110:three_prime_UTR 50.0%
!!! CTCCTGAGCTTTTAGGATGC+TGG - chr1_1:61996924-61996943 None:intergenic 50.0%
GACAGTCAAAAATCTGCCGC+AGG - chr1_1:61997109-61997128 None:intergenic 50.0%
ACAGTTTGGTCTGAGCCTGT+AGG + chr1_1:61997255-61997274 Msa0034110:three_prime_UTR 50.0%
!! AGGTAGCACTGATCACCACA+TGG - chr1_1:61997291-61997310 None:intergenic 50.0%
TGGTGATCAGTGCTACCTTC+AGG + chr1_1:61997293-61997312 Msa0034110:three_prime_UTR 50.0%
! TTCAACTCCCGGGTCTTTTC+GGG + chr1_1:61997723-61997742 Msa0034110:three_prime_UTR 50.0%
AGTGTAGTACTCTGACTGCC+AGG - chr1_1:61997811-61997830 None:intergenic 50.0%
TGAGTCACATTGTGCCGTGT+CGG - chr1_1:61997920-61997939 None:intergenic 50.0%
TCTGCAGTTGCCTCATAGCT+AGG + chr1_1:61998776-61998795 Msa0034110:intron 50.0%
GCAGGGTAAAAGATGGGAAC+AGG - chr1_1:61998957-61998976 None:intergenic 50.0%
CACTCATAAGGCCTTGGGTT+TGG + chr1_1:61999428-61999447 Msa0034110:intron 50.0%
TTAGCCAAAGCCCAAACCCA+AGG - chr1_1:61999442-61999461 None:intergenic 50.0%
! TTGGGCTTTGGCTAATGCAG+AGG + chr1_1:61999447-61999466 Msa0034110:intron 50.0%
AGATGGCATGTCTTGGTCCT+AGG - chr1_1:61999815-61999834 None:intergenic 50.0%
TCGGTCTAGATGGCATGTCT+TGG - chr1_1:61999822-61999841 None:intergenic 50.0%
AAGACATGCCATCTAGACCG+AGG + chr1_1:61999821-61999840 Msa0034110:three_prime_UTR 50.0%
CCGAGGTTGCTGAGAAAAAG+AGG + chr1_1:61999838-61999857 Msa0034110:three_prime_UTR 50.0%
CTGCTGGTCACCCAACAATA+TGG + chr1_1:61999893-61999912 Msa0034110:three_prime_UTR 50.0%
GCAGCTCTTCGAACAACTGA+AGG - chr1_1:62000478-62000497 None:intergenic 50.0%
GTTCGAAGAGCTGCAAGAAC+CGG + chr1_1:62000484-62000503 Msa0034110:three_prime_UTR 50.0%
CACAATGGCAACCTCTGAAC+CGG - chr1_1:62000506-62000525 None:intergenic 50.0%
! CAATGCCCATGTTTTGCTGC+TGG + chr1_1:62000549-62000568 Msa0034110:three_prime_UTR 50.0%
! ACCCGAAGAGGCATAACATC+AGG - chr1_1:62000645-62000664 None:intergenic 50.0%
ATCTTCGGACCAACCCAAGT+GGG - chr1_1:62001030-62001049 None:intergenic 50.0%
!! TTGGGTTGGTCCGAAGATGT+TGG + chr1_1:62001032-62001051 Msa0034110:intron 50.0%
! TTGGTCCGAAGATGTTGGCT+TGG + chr1_1:62001037-62001056 Msa0034110:intron 50.0%
!! TGGTCCGAAGATGTTGGCTT+GGG + chr1_1:62001038-62001057 Msa0034110:intron 50.0%
AGGTCCCAAGCCAACATCTT+CGG - chr1_1:62001045-62001064 None:intergenic 50.0%
!! AAGATGTTGGCTTGGGACCT+TGG + chr1_1:62001045-62001064 Msa0034110:intron 50.0%
ATCGAACCAGAGACCTTGAG+AGG - chr1_1:62001079-62001098 None:intergenic 50.0%
TCCCCAGTGTCAATTTCGGT+GGG + chr1_1:62001101-62001120 Msa0034110:intron 50.0%
AGCCCACCGAAATTGACACT+GGG - chr1_1:62001106-62001125 None:intergenic 50.0%
TAGCCCACCGAAATTGACAC+TGG - chr1_1:62001107-62001126 None:intergenic 50.0%
TACAAGACAGGTCAGGGAAG+AGG - chr1_1:62001249-62001268 None:intergenic 50.0%
CCTCTGCCATCTTATCCTTC+CGG + chr1_1:62001455-62001474 Msa0034110:intron 50.0%
AACACGCCGGAAGGATAAGA+TGG - chr1_1:62001464-62001483 None:intergenic 50.0%
GAAGATCTAAACACGCCGGA+AGG - chr1_1:62001473-62001492 None:intergenic 50.0%
CCAGAAAGACTACAAGGTGG+AGG - chr1_1:62001497-62001516 None:intergenic 50.0%
CCTCCACCTTGTAGTCTTTC+TGG + chr1_1:62001494-62001513 Msa0034110:intron 50.0%
TAGGGCCATACTGCAATTGG+AGG - chr1_1:62001725-62001744 None:intergenic 50.0%
AGCTAGGGCCATACTGCAAT+TGG - chr1_1:62001728-62001747 None:intergenic 50.0%
AGCTAGAGTCGGATCACGTA+TGG - chr1_1:62001785-62001804 None:intergenic 50.0%
TCTTTGTACAGCTGTGGGGA+TGG + chr1_1:62002257-62002276 Msa0034110:intron 50.0%
TGGATGGGGAGCCTTCTTAA+AGG + chr1_1:62002493-62002512 Msa0034110:three_prime_UTR 50.0%
CACAGAGAAGCTGATAAGCG+TGG + chr1_1:62002644-62002663 Msa0034110:three_prime_UTR 50.0%
AGCAGTTGGGGTTTGATGAG+TGG - chr1_1:62002994-62003013 None:intergenic 50.0%
CCTATAGCAGCAGTGCAAGA+GGG - chr1_1:62003432-62003451 None:intergenic 50.0%
ACCTATAGCAGCAGTGCAAG+AGG - chr1_1:62003433-62003452 None:intergenic 50.0%
GTTGCTGGAGATCATCGAGT+TGG + chr1_1:62003460-62003479 Msa0034110:three_prime_UTR 50.0%
!! TCGAGTTGGCATATTCGCCA+AGG + chr1_1:62003474-62003493 Msa0034110:three_prime_UTR 50.0%
GCCAAGGAACACATTGATGC+CGG + chr1_1:62003490-62003509 Msa0034110:three_prime_UTR 50.0%
ACCGGCATCAATGTGTTCCT+TGG - chr1_1:62003494-62003513 None:intergenic 50.0%
TCCAGATCAAGCACCTCCAT+GGG + chr1_1:62003543-62003562 Msa0034110:three_prime_UTR 50.0%
CCATGGCTCATCAATGGGAT+TGG - chr1_1:62003633-62003652 None:intergenic 50.0%
CCAATCCCATTGATGAGCCA+TGG + chr1_1:62003630-62003649 Msa0034110:three_prime_UTR 50.0%
CATTGGCCATGGCTCATCAA+TGG - chr1_1:62003639-62003658 None:intergenic 50.0%
TACAAGCTGGACATTGGCCA+TGG - chr1_1:62003650-62003669 None:intergenic 50.0%
GTTTCTGTCTCCTGGACCCT+GGG - chr1_1:61995880-61995899 None:intergenic 55.0%
GGTCCAGGAGACAGAAACCA+GGG + chr1_1:61995882-61995901 Msa0034110:CDS 55.0%
TTGCCCTGGTTTCTGTCTCC+TGG - chr1_1:61995888-61995907 None:intergenic 55.0%
TCTGCCGCAGGAAAGCAGAA+AGG - chr1_1:61997097-61997116 None:intergenic 55.0%
CCAGGTTCTTCTGCACTGGA+TGG - chr1_1:61997793-61997812 None:intergenic 55.0%
CCATCCAGTGCAGAAGAACC+TGG + chr1_1:61997790-61997809 Msa0034110:three_prime_UTR 55.0%
ACTGCCAGGTTCTTCTGCAC+TGG - chr1_1:61997797-61997816 None:intergenic 55.0%
GAGGCATGTCAATTCCCCAC+AGG + chr1_1:61998854-61998873 Msa0034110:three_prime_UTR 55.0%
TACGAAAAGGCCTCACTCGG+TGG + chr1_1:61999082-61999101 Msa0034110:intron 55.0%
AAGGCCTTGGGTTTGGGCTT+TGG + chr1_1:61999435-61999454 Msa0034110:intron 55.0%
CTCAGCAACCTCGGTCTAGA+TGG - chr1_1:61999832-61999851 None:intergenic 55.0%
! AGCTGCAAGAACCGGTTCAG+AGG + chr1_1:62000492-62000511 Msa0034110:three_prime_UTR 55.0%
CACGCCCAGCAGCAAAACAT+GGG - chr1_1:62000557-62000576 None:intergenic 55.0%
TCACGCCCAGCAGCAAAACA+TGG - chr1_1:62000558-62000577 None:intergenic 55.0%
CATCTTCGGACCAACCCAAG+TGG - chr1_1:62001031-62001050 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr1_1:62001065-62001084 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr1_1:62001063-62001082 Msa0034110:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+TGG + chr1_1:62001070-62001089 Msa0034110:intron 55.0%
CTCCCCAGTGTCAATTTCGG+TGG + chr1_1:62001100-62001119 Msa0034110:intron 55.0%
GCCCACCGAAATTGACACTG+GGG - chr1_1:62001105-62001124 None:intergenic 55.0%
CCGGAAGGATAAGATGGCAG+AGG - chr1_1:62001458-62001477 None:intergenic 55.0%
AGCTGTGGGGATGGTACACT+GGG + chr1_1:62002266-62002285 Msa0034110:intron 55.0%
GTACACTGGGAGAGCCACAT+CGG + chr1_1:62002279-62002298 Msa0034110:three_prime_UTR 55.0%
GTTCACCCGTGTACTCTCCT+AGG - chr1_1:62002616-62002635 None:intergenic 55.0%
CCCTCTTGCACTGCTGCTAT+AGG + chr1_1:62003429-62003448 Msa0034110:intron 55.0%
GGAACACATTGATGCCGGTG+AGG + chr1_1:62003495-62003514 Msa0034110:three_prime_UTR 55.0%
GTCCAGATCAAGCACCTCCA+TGG + chr1_1:62003542-62003561 Msa0034110:three_prime_UTR 55.0%
TCAGGTTTACGAGCCCATGG+AGG - chr1_1:62003559-62003578 None:intergenic 55.0%
TCCATGGGCTCGTAAACCTG+AGG + chr1_1:62003558-62003577 Msa0034110:three_prime_UTR 55.0%
CCATGGGCTCGTAAACCTGA+GGG + chr1_1:62003559-62003578 Msa0034110:three_prime_UTR 55.0%
TCGTCTCTCTTGGAACCCTC+AGG - chr1_1:62003577-62003596 None:intergenic 55.0%
CTCCGTCTGTGAAGAGTCCC+TGG - chr1_1:61995790-61995809 None:intergenic 60.0%
CAGGGACTCTTCACAGACGG+AGG + chr1_1:61995788-61995807 Msa0034110:intron 60.0%
GGTTTCTGTCTCCTGGACCC+TGG - chr1_1:61995881-61995900 None:intergenic 60.0%
GGGTCCAGGAGACAGAAACC+AGG + chr1_1:61995881-61995900 Msa0034110:intron 60.0%
!! CCAGGCACCGACGACAGAAA+AGG - chr1_1:61997014-61997033 None:intergenic 60.0%
!! CCTTTTCTGTCGTCGGTGCC+TGG + chr1_1:61997011-61997030 Msa0034110:three_prime_UTR 60.0%
CAGCTGTGGGGATGGTACAC+TGG + chr1_1:62002265-62002284 Msa0034110:intron 60.0%
TGACCTTCTCCACGCCGATG+TGG - chr1_1:62002296-62002315 None:intergenic 60.0%
CGGCGTGGAGAAGGTCAATG+CGG + chr1_1:62002299-62002318 Msa0034110:three_prime_UTR 60.0%
!! GCCCATGGAGGTGCTTGATC+TGG - chr1_1:62003547-62003566 None:intergenic 60.0%
CCCTCAGGTTTACGAGCCCA+TGG - chr1_1:62003562-62003581 None:intergenic 60.0%
GAGCCACATCGGCGTGGAGA+AGG + chr1_1:62002290-62002309 Msa0034110:three_prime_UTR 65.0%
CTGGGAGAGCCACATCGGCG+TGG + chr1_1:62002284-62002303 Msa0034110:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61995288 62004016 61995288 ID=Msa0034110;Name=Msa0034110
chr1_1 mRNA 61995288 62004016 61995288 ID=Msa0034110-mRNA-1;Parent=Msa0034110;Name=Msa0034110-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.86|0.87|0.93|0.93|0.87|16|2598|124
chr1_1 exon 61995288 61995293 61995288 ID=Msa0034110-mRNA-1:exon:19460;Parent=Msa0034110-mRNA-1
chr1_1 exon 61995330 61995422 61995330 ID=Msa0034110-mRNA-1:exon:19461;Parent=Msa0034110-mRNA-1
chr1_1 exon 61995882 61995991 61995882 ID=Msa0034110-mRNA-1:exon:19462;Parent=Msa0034110-mRNA-1
chr1_1 exon 61996155 61996732 61996155 ID=Msa0034110-mRNA-1:exon:19463;Parent=Msa0034110-mRNA-1
chr1_1 exon 61996877 61997032 61996877 ID=Msa0034110-mRNA-1:exon:19464;Parent=Msa0034110-mRNA-1
chr1_1 exon 61997116 61997163 61997116 ID=Msa0034110-mRNA-1:exon:19465;Parent=Msa0034110-mRNA-1
chr1_1 exon 61997243 61997314 61997243 ID=Msa0034110-mRNA-1:exon:19466;Parent=Msa0034110-mRNA-1
chr1_1 exon 61997694 61998187 61997694 ID=Msa0034110-mRNA-1:exon:19467;Parent=Msa0034110-mRNA-1
chr1_1 exon 61998783 61998936 61998783 ID=Msa0034110-mRNA-1:exon:19468;Parent=Msa0034110-mRNA-1
chr1_1 exon 61999817 62000037 61999817 ID=Msa0034110-mRNA-1:exon:19469;Parent=Msa0034110-mRNA-1
chr1_1 exon 62000482 62000613 62000482 ID=Msa0034110-mRNA-1:exon:19470;Parent=Msa0034110-mRNA-1
chr1_1 exon 62002268 62002355 62002268 ID=Msa0034110-mRNA-1:exon:19471;Parent=Msa0034110-mRNA-1
chr1_1 exon 62002467 62002514 62002467 ID=Msa0034110-mRNA-1:exon:19472;Parent=Msa0034110-mRNA-1
chr1_1 exon 62002590 62002718 62002590 ID=Msa0034110-mRNA-1:exon:19473;Parent=Msa0034110-mRNA-1
chr1_1 exon 62002944 62003021 62002944 ID=Msa0034110-mRNA-1:exon:19474;Parent=Msa0034110-mRNA-1
chr1_1 exon 62003451 62004016 62003451 ID=Msa0034110-mRNA-1:exon:19475;Parent=Msa0034110-mRNA-1
chr1_1 CDS 61995288 61995293 61995288 ID=Msa0034110-mRNA-1:cds;Parent=Msa0034110-mRNA-1
chr1_1 CDS 61995330 61995422 61995330 ID=Msa0034110-mRNA-1:cds;Parent=Msa0034110-mRNA-1
chr1_1 CDS 61995882 61995991 61995882 ID=Msa0034110-mRNA-1:cds;Parent=Msa0034110-mRNA-1
chr1_1 CDS 61996155 61996320 61996155 ID=Msa0034110-mRNA-1:cds;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61996321 61996732 61996321 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61996877 61997032 61996877 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61997116 61997163 61997116 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61997243 61997314 61997243 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61997694 61998187 61997694 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61998783 61998936 61998783 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 61999817 62000037 61999817 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 62000482 62000613 62000482 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 62002268 62002355 62002268 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 62002467 62002514 62002467 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 62002590 62002718 62002590 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 62002944 62003021 62002944 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
chr1_1 three_prime_UTR 62003451 62004016 62003451 ID=Msa0034110-mRNA-1:three_prime_utr;Parent=Msa0034110-mRNA-1
Gene Sequence

>Msa0034110

ATGATCGAAGAGCCGCCAAATGATGATGTGGGAACCTTGTCCAACAAGATAAATCAGTTGCAAAAGCAAATCCAGGCCGAGAGAATTCAATCCATTAAGGGTCCAGGAGACAGAAACCAGGGCAATCAAGACATGTCATCTGCTACAAGCATCAAGATTCCACGTATGGAAAGATTACCACCATATACATCTTGGATATTTTTGGACAGGAATCAGAGAATGGCTGACGATCAATCAGTTGTTGGAAGAAGACGGATCTATTATGATCAACGTGGAAGTGAGGCATTGATATGCAGTGACAGTGAGGAAGAATTAACAGAACCTGACGGTGAAAAACATGAATTTTGTGATGCTGAAGACCGTATTTTGTGGTAA
Protein sequence

>Msa0034110

MIEEPPNDDVGTLSNKINQLQKQIQAERIQSIKGPGDRNQGNQDMSSATSIKIPRMERLPPYTSWIFLDRNQRMADDQSVVGRRRIYYDQRGSEALICSDSEEELTEPDGEKHEFCDAEDRILW*