AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365490 MtrunA17_Chr1g0188191 93.103 580 10 1 1 550 12 591 0.0 1110
Msa1365490 MtrunA17_Chr6g0476041 62.271 546 166 6 6 550 18 524 0.0 697
Msa1365490 MtrunA17_Chr6g0456691 34.949 392 225 10 168 543 45 422 1.23e-78 254
Msa1365490 MtrunA17_Chr8g0387921 36.158 354 212 8 193 540 74 419 2.74e-77 250
Msa1365490 MtrunA17_Chr8g0347321 34.568 405 245 11 147 540 44 439 2.54e-74 243
Msa1365490 MtrunA17_Chr6g0451321 33.254 421 256 11 134 543 54 460 1.43e-72 239
Msa1365490 MtrunA17_Chr6g0456681 34.626 361 211 7 192 541 63 409 5.47e-71 233
Msa1365490 MtrunA17_Chr7g0226991 37.466 363 207 10 189 542 53 404 1.62e-70 231
Msa1365490 MtrunA17_Chr5g0414061 36.538 364 200 10 193 542 94 440 2.40e-70 232
Msa1365490 MtrunA17_Chr2g0283851 35.135 370 207 10 189 542 50 402 1.05e-67 224
Msa1365490 MtrunA17_Chr3g0140371 35.180 361 217 9 188 542 13 362 5.64e-67 221
Msa1365490 MtrunA17_Chr5g0414051 34.167 360 215 10 193 542 75 422 1.89e-65 219
Msa1365490 MtrunA17_Chr8g0391481 36.338 355 212 10 193 541 27 373 2.20e-65 217
Msa1365490 MtrunA17_Chr5g0414091 34.160 363 212 11 193 542 85 433 2.38e-65 219
Msa1365490 MtrunA17_Chr5g0414041 35.734 361 209 10 193 542 87 435 7.03e-61 207
Msa1365490 MtrunA17_Chr7g0258851 28.709 519 307 18 59 545 106 593 6.56e-54 192
Msa1365490 MtrunA17_Chr7g0259711 33.607 366 207 10 193 543 91 435 2.84e-53 187
Msa1365490 MtrunA17_Chr1g0175671 31.025 361 207 12 193 536 170 505 8.06e-53 187
Msa1365490 MtrunA17_Chr8g0384421 31.122 392 212 14 174 540 114 472 8.17e-51 181
Msa1365490 MtrunA17_Chr4g0071391 29.156 391 237 10 160 536 78 442 1.72e-50 180
Msa1365490 MtrunA17_Chr5g0413271 31.016 374 219 11 171 536 130 472 3.75e-50 179
Msa1365490 MtrunA17_Chr7g0269991 32.432 370 183 15 193 537 137 464 1.53e-49 177
Msa1365490 MtrunA17_Chr8g0368461 30.332 422 234 15 145 536 133 524 1.68e-49 179
Msa1365490 MtrunA17_Chr4g0070341 30.227 440 245 17 129 540 66 471 2.72e-48 174
Msa1365490 MtrunA17_Chr5g0430371 31.034 377 224 11 175 536 40 395 6.81e-48 171
Msa1365490 MtrunA17_Chr2g0287901 32.514 366 206 9 192 540 96 437 7.42e-48 172
Msa1365490 MtrunA17_Chr1g0213281 30.263 380 210 12 189 542 171 521 2.32e-47 173
Msa1365490 MtrunA17_Chr8g0360521 28.989 376 226 13 189 548 67 417 2.00e-46 167
Msa1365490 MtrunA17_Chr4g0068111 28.462 390 244 10 165 540 85 453 1.07e-45 167
Msa1365490 MtrunA17_Chr3g0097891 29.670 364 210 12 182 536 20 346 3.25e-41 152
Msa1365490 MtrunA17_Chr1g0210771 30.447 358 197 14 193 536 59 378 6.31e-41 152
Msa1365490 MtrunA17_Chr5g0437601 29.124 388 240 16 165 537 54 421 2.85e-40 151
Msa1365490 MtrunA17_Chr1g0171171 30.366 382 224 13 166 540 29 375 4.04e-40 149
Msa1365490 MtrunA17_Chr3g0114101 27.990 393 257 13 155 537 51 427 8.38e-40 150
Msa1365490 MtrunA17_Chr3g0113671 30.278 360 215 13 193 536 106 445 9.35e-39 147
Msa1365490 MtrunA17_Chr4g0005491 28.184 369 225 12 191 540 60 407 2.49e-38 145
Msa1365490 MtrunA17_Chr4g0005481 27.778 378 226 15 182 540 97 446 2.73e-38 146
Msa1365490 MtrunA17_Chr7g0243301 28.232 379 244 13 175 540 46 409 1.07e-37 144
Msa1365490 MtrunA17_Chr3g0085071 29.891 368 188 13 193 540 46 363 1.50e-37 142
Msa1365490 MtrunA17_Chr3g0126021 29.032 372 213 14 192 546 128 465 2.13e-37 144
Msa1365490 MtrunA17_Chr2g0314801 29.600 375 205 17 182 540 22 353 2.17e-37 141
Msa1365490 MtrunA17_Chr3g0105301 28.056 360 213 11 193 536 43 372 2.26e-37 142
Msa1365490 MtrunA17_Chr8g0384151 26.525 377 232 11 181 545 78 421 7.21e-37 142
Msa1365490 MtrunA17_Chr3g0091031 28.689 366 187 13 193 536 31 344 1.89e-36 139
Msa1365490 MtrunA17_Chr7g0221271 42.446 139 77 1 181 316 67 205 5.93e-36 133
Msa1365490 MtrunA17_Chr7g0221281 30.120 249 161 5 297 543 2 239 1.31e-35 134
Msa1365490 MtrunA17_Chr2g0283581 30.471 361 194 16 189 536 38 354 1.55e-35 136
Msa1365490 MtrunA17_Chr2g0325481 30.000 350 202 12 193 536 50 362 1.58e-35 136
Msa1365490 MtrunA17_Chr5g0413851 27.083 384 236 12 160 536 9 355 1.70e-35 136
Msa1365490 MtrunA17_Chr4g0041011 29.577 355 197 14 193 536 47 359 4.43e-35 135
Msa1365490 MtrunA17_Chr3g0085081 28.689 366 187 13 193 536 31 344 4.48e-35 135
Msa1365490 MtrunA17_Chr7g0221291 50.476 105 52 0 181 285 67 171 2.51e-34 127
Msa1365490 MtrunA17_Chr5g0437291 27.869 366 219 13 193 536 165 507 5.37e-34 135
Msa1365490 MtrunA17_Chr4g0006991 26.923 364 228 14 193 540 86 427 6.16e-34 133
Msa1365490 MtrunA17_Chr4g0045941 28.371 356 207 12 190 536 30 346 1.03e-33 131
Msa1365490 MtrunA17_Chr7g0242701 26.184 359 237 12 193 540 86 427 2.12e-33 132
Msa1365490 MtrunA17_Chr4g0049421 27.198 364 230 12 193 540 48 392 3.13e-32 128
Msa1365490 MtrunA17_Chr2g0314791 29.086 361 201 14 188 536 24 341 2.94e-31 124
Msa1365490 MtrunA17_Chr4g0045951 28.857 350 207 12 193 536 45 358 5.31e-30 121
Msa1365490 MtrunA17_Chr1g0209921 38.286 175 92 6 193 360 44 209 2.55e-29 117
Msa1365490 MtrunA17_Chr6g0455901 24.934 377 235 12 185 538 63 414 5.05e-29 119
Msa1365490 MtrunA17_Chr5g0414081 33.333 210 115 10 346 543 6 202 3.05e-26 106
Msa1365490 MtrunA17_Chr1g0178081 45.161 93 47 2 192 281 54 145 4.53e-18 85.9
Msa1365490 MtrunA17_Chr1g0178081 32.000 125 67 4 428 550 243 351 8.32e-12 67.0
Msa1365490 MtrunA17_Chr2g0287911 43.548 62 28 1 187 248 55 109 2.24e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365490 AT4G25360.1 58.182 550 189 8 5 548 18 532 0.0 650
Msa1365490 AT4G25360.2 58.182 550 189 8 5 548 18 532 0.0 650
Msa1365490 AT5G51640.1 73.995 373 94 2 181 550 126 498 0.0 617
Msa1365490 AT1G01430.1 37.255 408 236 12 145 540 48 447 8.95e-83 266
Msa1365490 AT5G15900.1 38.107 391 218 11 167 547 40 416 4.79e-82 263
Msa1365490 AT5G15900.2 38.107 391 218 11 167 547 59 435 8.74e-82 263
Msa1365490 AT5G15890.1 34.554 437 243 12 122 541 113 523 7.25e-79 257
Msa1365490 AT4G11090.1 37.975 395 227 12 155 540 40 425 3.26e-78 253
Msa1365490 AT4G23790.1 37.360 356 208 8 193 540 79 427 8.02e-77 249
Msa1365490 AT1G70230.1 38.462 364 181 11 193 542 79 413 8.48e-76 246
Msa1365490 AT4G01080.1 38.315 368 209 9 184 545 81 436 6.44e-75 244
Msa1365490 AT3G02440.1 33.803 355 217 7 193 541 127 469 1.14e-73 242
Msa1365490 AT3G02440.2 33.803 355 217 7 193 541 135 477 1.17e-73 243
Msa1365490 AT3G28150.1 32.410 361 223 8 189 542 66 412 3.66e-66 221
Msa1365490 AT5G49340.1 31.169 385 214 9 174 536 82 437 3.24e-52 185
Msa1365490 AT5G20590.1 32.964 361 201 11 192 536 140 475 4.83e-52 185
Msa1365490 AT1G60790.1 30.516 426 252 14 133 536 125 528 1.11e-51 185
Msa1365490 AT5G06700.1 29.834 362 210 10 193 536 255 590 2.41e-49 180
Msa1365490 AT3G06080.2 30.481 374 213 10 191 543 101 448 3.79e-48 174
Msa1365490 AT1G73140.1 30.831 373 227 11 183 544 57 409 1.01e-47 171
Msa1365490 AT5G19160.1 30.667 375 225 11 191 549 97 452 2.32e-47 172
Msa1365490 AT5G20680.6 28.966 435 242 15 137 540 59 457 2.58e-47 171
Msa1365490 AT3G12060.1 29.484 407 244 11 152 547 170 544 6.77e-47 172
Msa1365490 AT3G62390.1 28.285 449 242 14 139 536 48 467 7.42e-47 171
Msa1365490 AT5G20680.4 28.966 435 242 15 137 540 153 551 1.18e-46 172
Msa1365490 AT5G20680.1 28.966 435 242 15 137 540 153 551 1.18e-46 172
Msa1365490 AT5G20680.3 28.966 435 242 15 137 540 153 551 1.18e-46 172
Msa1365490 AT5G20680.5 28.966 435 242 15 137 540 153 551 1.18e-46 172
Msa1365490 AT5G20680.2 28.966 435 242 15 137 540 135 533 1.39e-46 171
Msa1365490 AT5G64020.1 30.890 382 200 17 193 540 57 408 1.78e-46 168
Msa1365490 AT5G06230.2 29.333 375 221 12 182 536 10 360 4.95e-43 157
Msa1365490 AT5G06230.1 29.333 375 221 12 182 536 51 401 1.71e-42 157
Msa1365490 AT2G40160.2 28.431 408 245 15 159 543 44 427 6.25e-42 156
Msa1365490 AT2G40160.1 28.501 407 244 15 159 542 44 426 1.70e-41 155
Msa1365490 AT2G30010.1 30.628 382 215 13 177 536 39 392 1.90e-41 154
Msa1365490 AT2G30010.2 30.628 382 215 13 177 536 82 435 3.10e-41 154
Msa1365490 AT3G14850.2 29.888 358 198 13 192 536 33 350 7.83e-41 151
Msa1365490 AT3G11570.1 30.435 345 196 13 209 536 98 415 4.76e-40 151
Msa1365490 AT5G64470.3 28.184 369 215 14 193 540 55 394 6.08e-40 150
Msa1365490 AT2G40320.1 28.871 381 232 16 174 537 61 419 6.84e-40 150
Msa1365490 AT2G30900.1 29.577 355 203 12 193 536 43 361 1.19e-39 148
Msa1365490 AT3G54260.1 30.556 360 202 12 193 540 51 374 4.70e-39 147
Msa1365490 AT3G11030.1 27.123 365 241 12 183 537 96 445 7.24e-39 148
Msa1365490 AT5G64470.2 28.108 370 220 14 193 540 55 400 7.68e-39 147
Msa1365490 AT2G31110.2 30.110 362 209 14 183 536 33 358 1.33e-37 142
Msa1365490 AT1G29050.1 29.412 357 208 11 191 540 59 378 3.63e-37 142
Msa1365490 AT1G48880.1 28.609 381 209 14 182 543 106 442 5.06e-37 143
Msa1365490 AT2G14530.1 27.461 386 227 15 179 540 50 406 8.98e-37 141
Msa1365490 AT5G01620.2 29.058 382 219 17 181 540 98 449 1.81e-36 141
Msa1365490 AT5G01620.1 29.058 382 219 17 181 540 98 449 1.81e-36 141
Msa1365490 AT5G01620.3 29.730 370 208 17 193 540 118 457 3.00e-36 141
Msa1365490 AT2G37720.1 27.224 371 210 13 193 537 143 479 3.53e-36 141
Msa1365490 AT2G34070.1 28.099 363 206 14 191 540 63 383 1.93e-35 137
Msa1365490 AT2G38320.1 27.751 418 243 18 150 540 19 404 1.37e-34 135
Msa1365490 AT2G40150.1 27.957 372 229 12 193 543 71 424 2.15e-34 135
Msa1365490 AT5G01360.2 26.776 366 221 12 193 537 36 375 5.31e-34 133
Msa1365490 AT5G01360.1 26.776 366 221 12 193 537 92 431 1.41e-33 133
Msa1365490 AT2G42570.1 26.913 379 235 11 168 540 22 364 1.51e-33 131
Msa1365490 AT5G58600.1 28.108 370 215 12 190 540 63 400 2.23e-33 132
Msa1365490 AT1G78710.1 27.901 362 196 14 193 536 38 352 7.82e-32 126
Msa1365490 AT3G55990.1 27.586 377 216 15 193 542 140 486 2.63e-30 124
Msa1365490 AT3G62390.2 39.037 187 77 6 139 288 48 234 8.92e-30 122
Msa1365490 AT5G20590.2 33.333 249 142 7 192 426 140 378 1.91e-29 120
Msa1365490 AT5G19160.2 29.675 246 155 6 191 425 97 335 1.86e-28 116
Msa1365490 AT2G38320.2 27.907 344 193 16 223 540 7 321 3.61e-27 112
Msa1365490 AT3G06080.1 29.644 253 148 7 191 426 101 340 5.11e-27 112
Msa1365490 AT2G40160.3 29.680 219 146 5 159 371 44 260 9.99e-27 110
Msa1365490 AT5G64470.1 29.057 265 152 10 193 436 55 304 9.08e-26 108
Msa1365490 AT5G64470.4 29.057 265 152 10 193 436 55 304 9.94e-26 108
Msa1365490 AT2G31110.3 35.106 188 107 6 183 364 33 211 3.42e-25 105
Msa1365490 AT2G30900.2 34.286 175 98 7 193 360 43 207 4.06e-25 105
Msa1365490 AT5G06230.3 28.464 267 161 9 182 428 51 307 1.89e-22 98.6
Msa1365490 AT1G78710.2 41.441 111 56 3 178 281 10 118 2.28e-21 95.1
Msa1365490 AT5G58600.2 44.086 93 51 1 190 281 63 155 4.96e-21 94.0
Msa1365490 AT3G14850.1 26.224 286 158 13 264 536 2 247 7.52e-15 75.1
Msa1365490 AT2G34070.2 24.825 286 160 14 264 536 2 245 3.05e-12 67.4

Find 179 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGTTTAGTGATCTTATT+TGG 0.114557 tig0018295:-19117 Msa1365490:intergenic
TCAGGCTTCTTTACTGATTC+TGG 0.163701 tig0018295:-15030 Msa1365490:intergenic
AGGACAACCACGTCAAAATT+TGG 0.190228 tig0018295:-18649 Msa1365490:intergenic
AGATAGGATGTGTGTAATTA+AGG 0.199851 tig0018295:+19398 Msa1365490:three_prime_UTR
TCAATAGAAGCAACATTTAT+AGG 0.210296 tig0018295:-14590 Msa1365490:intergenic
TAAATCGAAGTTGACGTTAA+TGG 0.229432 tig0018295:+19032 Msa1365490:CDS
ATGGTCATCCTGGGCCTTAC+AGG 0.251182 tig0018295:+19085 Msa1365490:CDS
ACCATCCAAGACCACTTTCT+TGG 0.251239 tig0018295:+14429 Msa1365490:CDS
CCGATTGGTGCCACGTTTCA+TGG 0.257508 tig0018295:+14518 Msa1365490:CDS
CCAAACGAAGTCGTGGGTTT+TGG 0.277729 tig0018295:-14776 Msa1365490:intergenic
TGTGGCGGTGGCCTTCCATC+TGG 0.278954 tig0018295:-19141 Msa1365490:intergenic
TGCCCCTGACCCGAAGTTAA+TGG 0.289127 tig0018295:+18618 Msa1365490:CDS
GTGCAATCTCCCAACAAATA+TGG 0.293582 tig0018295:-19343 Msa1365490:intergenic
TTACGATTTCCCCGATTCTT+TGG 0.311708 tig0018295:-18469 Msa1365490:intergenic
GCATGACCCACCGGTGTTCC+AGG 0.323014 tig0018295:-18896 Msa1365490:intergenic
GACGTGGTTGTCCTTTCTTC+CGG 0.330743 tig0018295:+18658 Msa1365490:CDS
ATGCATGAGCAACAGGTTAC+AGG 0.340638 tig0018295:+18979 Msa1365490:CDS
GGGAAGACCTTGGCTTTCAT+TGG 0.343839 tig0018295:+17360 Msa1365490:CDS
AACTTCAAGTGCAACTGTTT+CGG 0.351632 tig0018295:+14859 Msa1365490:CDS
TTAGTGATCTTATTTGGGTC+AGG 0.357250 tig0018295:-19111 Msa1365490:intergenic
CACGTTTAGTGATCTTATTT+GGG 0.366019 tig0018295:-19116 Msa1365490:intergenic
GGGAAGTTCAAGGTCTTATA+CGG 0.367511 tig0018295:+19419 Msa1365490:three_prime_UTR
GTTTACTTTACATGATAGAT+AGG 0.368569 tig0018295:+19382 Msa1365490:three_prime_UTR
GGAGATTGCACTCACACCTT+TGG 0.369253 tig0018295:+19355 Msa1365490:three_prime_UTR
TACACAACATTGATTCCATT+TGG 0.372534 tig0018295:-17401 Msa1365490:intergenic
GCCTGTTGCACTTGGTGAAC+TGG 0.373204 tig0018295:+18933 Msa1365490:CDS
TTGTCCTTTCTTCCGGTCAT+TGG 0.374487 tig0018295:+18665 Msa1365490:CDS
TCTGAGAAGTTAGATGTATC+TGG 0.378480 tig0018295:+14563 Msa1365490:CDS
GTGATCTGTACCATGGGAAT+TGG 0.379220 tig0018295:+17163 Msa1365490:CDS
TGCAGAATTGCCAGGGTAAT+GGG 0.379873 tig0018295:+17244 Msa1365490:CDS
CCAAAACCCACGACTTCGTT+TGG 0.382102 tig0018295:+14776 Msa1365490:CDS
TGCTTGCACTGGTGCATGCC+AGG 0.387421 tig0018295:+19168 Msa1365490:CDS
TTCATCTGCTTGGACTTGTC+TGG 0.388587 tig0018295:-18748 Msa1365490:intergenic
GGACAACCACGTCAAAATTT+GGG 0.391976 tig0018295:-18648 Msa1365490:intergenic
TTCCAAGACAAGTTCATTCC+AGG 0.392884 tig0018295:-19202 Msa1365490:intergenic
TGCAATCTCCCAACAAATAT+GGG 0.394210 tig0018295:-19342 Msa1365490:intergenic
ACCAGTTCACCAAGTGCAAC+AGG 0.396065 tig0018295:-18934 Msa1365490:intergenic
GGATATGTTCCATTAACTTC+GGG 0.398865 tig0018295:-18627 Msa1365490:intergenic
TGTTCCATTAACTTCGGGTC+AGG 0.405587 tig0018295:-18622 Msa1365490:intergenic
CTGTAATGATAGTCCGGATA+TGG 0.407364 tig0018295:+18521 Msa1365490:CDS
TACCGACATGATGGTCATCC+TGG 0.409265 tig0018295:+19075 Msa1365490:CDS
GTTGTTGACCTTCATCTGCT+TGG 0.410264 tig0018295:-18758 Msa1365490:intergenic
GATAGGATGTGTGTAATTAA+GGG 0.411396 tig0018295:+19399 Msa1365490:three_prime_UTR
AGATGGAAGGCCACCGCCAC+AGG 0.412614 tig0018295:+19143 Msa1365490:CDS
TTTGGGTCAGGGCTCCTGTA+AGG 0.416109 tig0018295:-19099 Msa1365490:intergenic
CCGGCATTGGATGCGTTGTC+AGG 0.417008 tig0018295:-15048 Msa1365490:intergenic
CTGACAAAGATTATGAGAAT+TGG 0.417959 tig0018295:+17271 Msa1365490:CDS
ATGCAGAATTGCCAGGGTAA+TGG 0.425214 tig0018295:+17243 Msa1365490:CDS
CTCATAATGATCTGGTGAAT+AGG 0.425680 tig0018295:-18866 Msa1365490:intergenic
ATGTGTTCATGAGCAATTCC+AGG 0.427783 tig0018295:+19708 Msa1365490:three_prime_UTR
ACAATCCAAGAAAGTGGTCT+TGG 0.428546 tig0018295:-14434 Msa1365490:intergenic
AATGCCGGTTCAGTTAATTC+AGG 0.433625 tig0018295:+15063 Msa1365490:CDS
AAATACGATGCATGAGCAAC+AGG 0.433872 tig0018295:+18972 Msa1365490:CDS
GTGGCGGTGGCCTTCCATCT+GGG 0.434365 tig0018295:-19140 Msa1365490:intergenic
TATCTTGAATAACGAGATAG+TGG 0.435893 tig0018295:+18708 Msa1365490:CDS
GAAGTCGTGGAGGTTTCCTT+TGG 0.438635 tig0018295:-14982 Msa1365490:intergenic
AACACCGGTGGGTCATGCAC+TGG 0.441439 tig0018295:+18901 Msa1365490:CDS
ACTTGTGAATTTGCTTGAGC+AGG 0.443123 tig0018295:-14830 Msa1365490:intergenic
CAATTCTCATAATCTTTGTC+AGG 0.443282 tig0018295:-17270 Msa1365490:intergenic
TTCTGCATCTGTGTCAATAC+AGG 0.448339 tig0018295:-17228 Msa1365490:intergenic
TGAATTAACTGAACCGGCAT+TGG 0.450829 tig0018295:-15061 Msa1365490:intergenic
CACAATCACAATCACATACT+TGG 0.450945 tig0018295:-19750 Msa1365490:intergenic
AGGTAGAGGTACCAAAGAAT+CGG 0.451259 tig0018295:+18458 Msa1365490:intron
ATCATTATGAGGGTGGAGCC+TGG 0.451662 tig0018295:+18878 Msa1365490:CDS
CTTGGTGAACTGGTAGAAAA+CGG 0.458499 tig0018295:+18943 Msa1365490:CDS
GGTAGAGGTACCAAAGAATC+GGG 0.459715 tig0018295:+18459 Msa1365490:intron
TACCTGGAATGAACTTGTCT+TGG 0.460482 tig0018295:+19200 Msa1365490:CDS
ATTGCGAGACCTTTGTAAGT+TGG 0.460750 tig0018295:-18835 Msa1365490:intergenic
TTCAGTAGCTCGAAACCAAA+TGG 0.465522 tig0018295:+17386 Msa1365490:CDS
GGGATATGTTCCATTAACTT+CGG 0.466003 tig0018295:-18628 Msa1365490:intergenic
CCATGAAACGTGGCACCAAT+CGG 0.466696 tig0018295:-14518 Msa1365490:intergenic
TGCCAGGTCCTGTCGATACC+TGG 0.468729 tig0018295:+19184 Msa1365490:CDS
TCAGGGCTCCTGTAAGGCCC+AGG 0.476391 tig0018295:-19093 Msa1365490:intergenic
TGATCTGTACCATGGGAATT+GGG 0.480897 tig0018295:+17164 Msa1365490:CDS
GTAACCTGAATTAACTGAAC+CGG 0.483044 tig0018295:-15067 Msa1365490:intergenic
TTCCGAGTTTGAAGTGGTAT+CGG 0.483511 tig0018295:-14675 Msa1365490:intergenic
ACAAAGGTCTCGCAATTGTT+CGG 0.487631 tig0018295:+18842 Msa1365490:CDS
TTGAGCAGGCAAACTAGTAT+TGG 0.488542 tig0018295:-14816 Msa1365490:intergenic
GAGGGTGGAGCCTGGAACAC+CGG 0.488669 tig0018295:+18886 Msa1365490:CDS
GCAACTGTTTCGGTTGAAGC+AGG 0.488742 tig0018295:+14869 Msa1365490:CDS
CAAACCAATGACCGGAAGAA+AGG 0.492984 tig0018295:-18669 Msa1365490:intergenic
GACACAGATGCAGAATTGCC+AGG 0.493240 tig0018295:+17236 Msa1365490:CDS
TGCAAGCAATCCTGTGGCGG+TGG 0.493660 tig0018295:-19153 Msa1365490:intergenic
TTGGTGAACTGGTAGAAAAC+GGG 0.495173 tig0018295:+18944 Msa1365490:CDS
GGTGGAGCCTGGAACACCGG+TGG 0.496840 tig0018295:+18889 Msa1365490:CDS
GCTCCACCCTCATAATGATC+TGG 0.502988 tig0018295:-18874 Msa1365490:intergenic
TCGTGGGATGTCACACTGAA+AGG 0.503362 tig0018295:-17304 Msa1365490:intergenic
TAGTGATCTTATTTGGGTCA+GGG 0.503772 tig0018295:-19110 Msa1365490:intergenic
GTTCTTGTTTCATCGCCGAT+TGG 0.503785 tig0018295:+14503 Msa1365490:CDS
GAATTGGGTACATGATCCAT+TGG 0.511270 tig0018295:+17179 Msa1365490:CDS
ATCACTAAACGTGGCCCAGA+TGG 0.514346 tig0018295:+19126 Msa1365490:CDS
GTTCCATTAACTTCGGGTCA+GGG 0.514562 tig0018295:-18621 Msa1365490:intergenic
CGCCACAGGATTGCTTGCAC+TGG 0.514703 tig0018295:+19157 Msa1365490:CDS
TTAAGAAAAGCATACTATAG+AGG 0.515342 tig0018295:+19467 Msa1365490:three_prime_UTR
CAAGCCATGAGGACCATATC+CGG 0.516438 tig0018295:-18534 Msa1365490:intergenic
CCGCATCTGTAATGATAGTC+CGG 0.516536 tig0018295:+18515 Msa1365490:CDS
AGAAACAAAATAAAATAAAG+AGG 0.517667 tig0018295:-19504 Msa1365490:intergenic
CGTGGGATGTCACACTGAAA+GGG 0.519480 tig0018295:-17303 Msa1365490:intergenic
CTATTCACCAGATCATTATG+AGG 0.520724 tig0018295:+18867 Msa1365490:CDS
TGGAGCTTATCCACACCAGC+TGG 0.522748 tig0018295:-18589 Msa1365490:intergenic
AAAACAACAATCCAAGAAAG+TGG 0.527041 tig0018295:-14440 Msa1365490:intergenic
AGATAGTGGGAGGACAGTTA+TGG 0.528309 tig0018295:+18722 Msa1365490:CDS
TTAGATTCACAATCTTCCAC+TGG 0.528340 tig0018295:+14626 Msa1365490:CDS
CCAGCTGGAGCATAATCAAA+TGG 0.539143 tig0018295:-18574 Msa1365490:intergenic
CATGTATTGTTTGTGTAAAG+TGG 0.539629 tig0018295:-17204 Msa1365490:intergenic
GAAAAGCATACTATAGAGGT+GGG 0.539693 tig0018295:+19471 Msa1365490:three_prime_UTR
AATGTTGTGTATTCTGTGGC+AGG 0.542105 tig0018295:+17413 Msa1365490:CDS
GTTTGGCAATAGTGTAGATA+CGG 0.543709 tig0018295:+14793 Msa1365490:CDS
TCGGGTCAGGGGCATCAAGA+TGG 0.543725 tig0018295:-18609 Msa1365490:intergenic
AGGTCTTATACGGTATATAG+AGG 0.543847 tig0018295:+19429 Msa1365490:three_prime_UTR
TTCCAGGTATCGACAGGACC+TGG 0.544847 tig0018295:-19186 Msa1365490:intergenic
TTCCATTAACTTCGGGTCAG+GGG 0.544917 tig0018295:-18620 Msa1365490:intergenic
ACACCGGTGGGTCATGCACT+GGG 0.546027 tig0018295:+18902 Msa1365490:CDS
CCTGACAACGCATCCAATGC+CGG 0.546333 tig0018295:+15048 Msa1365490:CDS
AACCGATACCACTTCAAACT+CGG 0.546807 tig0018295:+14673 Msa1365490:CDS
GTCTACTTCCGAGTTTGAAG+TGG 0.548097 tig0018295:-14681 Msa1365490:intergenic
CTTCCCAGTGCATGACCCAC+CGG 0.549025 tig0018295:-18905 Msa1365490:intergenic
CCATTTGATTATGCTCCAGC+TGG 0.552386 tig0018295:+18574 Msa1365490:CDS
GCGTTTCAATACCGACATGA+TGG 0.557601 tig0018295:+19066 Msa1365490:CDS
GCTGATGAGAGGGAAGACCT+TGG 0.564264 tig0018295:+17350 Msa1365490:CDS
TCCAAGAAAGTGGTCTTGGA+TGG 0.565929 tig0018295:-14430 Msa1365490:intergenic
AATTGGGTACATGATCCATT+GGG 0.567737 tig0018295:+17180 Msa1365490:CDS
AGACAAGTCCAAGCAGATGA+AGG 0.568935 tig0018295:+18750 Msa1365490:CDS
TGTCAGGCCTCCCATTACCC+TGG 0.571687 tig0018295:-17254 Msa1365490:intergenic
ACCGACATGATGGTCATCCT+GGG 0.580029 tig0018295:+19076 Msa1365490:CDS
AGTTCATTCCAGGTATCGAC+AGG 0.581656 tig0018295:-19192 Msa1365490:intergenic
GTGGAGCCTGGAACACCGGT+GGG 0.582467 tig0018295:+18890 Msa1365490:CDS
ACTATTGCCAAACGAAGTCG+TGG 0.582517 tig0018295:-14783 Msa1365490:intergenic
GAAGATTGTGAATCTAAAGA+CGG 0.584346 tig0018295:-14620 Msa1365490:intergenic
GTGTAATTAAGGGAAGTTCA+AGG 0.585044 tig0018295:+19409 Msa1365490:three_prime_UTR
AAGATTATGAGAATTGGCGA+TGG 0.585427 tig0018295:+17277 Msa1365490:CDS
AAGGTTAAGCCTGTTGCACT+TGG 0.585969 tig0018295:+18925 Msa1365490:CDS
CTAAACGTGGCCCAGATGGA+AGG 0.586407 tig0018295:+19130 Msa1365490:CDS
AAAGCATACTATAGAGGTGG+GGG 0.587983 tig0018295:+19473 Msa1365490:three_prime_UTR
TGAATCTCCAATGAAAGCCA+AGG 0.588688 tig0018295:-17367 Msa1365490:intergenic
AGAAAAGCATACTATAGAGG+TGG 0.589915 tig0018295:+19470 Msa1365490:three_prime_UTR
TGTGTAGACTTTATAGAGAG+AGG 0.592377 tig0018295:+19575 Msa1365490:three_prime_UTR
TTCTGGAACAGCTGTTAATG+TGG 0.596453 tig0018295:-15013 Msa1365490:intergenic
TGTGGAATTATCAGAAGTCG+TGG 0.596523 tig0018295:-14995 Msa1365490:intergenic
CTGCTTAGCAAACCAATGAC+CGG 0.598348 tig0018295:-18677 Msa1365490:intergenic
TGATTATGCTCCAGCTGGTG+TGG 0.603990 tig0018295:+18579 Msa1365490:CDS
TGTAAAGTAAACAGAACCAA+AGG 0.604456 tig0018295:-19371 Msa1365490:intergenic
TGGTGTGATTATAGCACCAA+AGG 0.606346 tig0018295:+14966 Msa1365490:intron
TAGTCCGGATATGGTCCTCA+TGG 0.607259 tig0018295:+18530 Msa1365490:CDS
CACCAGTGCAAGCAATCCTG+TGG 0.608621 tig0018295:-19159 Msa1365490:intergenic
TTATTGACATCCTCGCTCGT+TGG 0.611402 tig0018295:-14731 Msa1365490:intergenic
ATCTCCCAACAAATATGGGG+GGG 0.611580 tig0018295:-19338 Msa1365490:intergenic
CGGTGGGTCATGCACTGGGA+AGG 0.611769 tig0018295:+18906 Msa1365490:CDS
GCAATCTCCCAACAAATATG+GGG 0.613060 tig0018295:-19341 Msa1365490:intergenic
CAATAGTAAGTCTAGTTCTG+TGG 0.616322 tig0018295:+14703 Msa1365490:CDS
CAGTGCAAGCAATCCTGTGG+CGG 0.618270 tig0018295:-19156 Msa1365490:intergenic
TTTGTGTAAAGTGGTCCCAA+TGG 0.618822 tig0018295:-17195 Msa1365490:intergenic
TAGTGGGAGGACAGTTATGG+TGG 0.622969 tig0018295:+18725 Msa1365490:CDS
ATCATCAAGAGAGAATATGA+AGG 0.626533 tig0018295:+19225 Msa1365490:CDS
TCACCAGATCATTATGAGGG+TGG 0.628408 tig0018295:+18871 Msa1365490:CDS
ATTGCTATCACTAGTACCAG+TGG 0.629797 tig0018295:-14642 Msa1365490:intergenic
TAGGCTGTGATCTGTACCAT+GGG 0.633271 tig0018295:+17157 Msa1365490:intron
GCTACACATCCAACTTACAA+AGG 0.636013 tig0018295:+18826 Msa1365490:CDS
ACACAGATGCAGAATTGCCA+GGG 0.636339 tig0018295:+17237 Msa1365490:CDS
ATCAAGAGAGAATATGAAGG+TGG 0.637532 tig0018295:+19228 Msa1365490:CDS
AAAAGCATACTATAGAGGTG+GGG 0.637961 tig0018295:+19472 Msa1365490:three_prime_UTR
CAATCTCCCAACAAATATGG+GGG 0.638171 tig0018295:-19340 Msa1365490:intergenic
ATTTAATCATATCTCATGAG+AGG 0.645423 tig0018295:-19277 Msa1365490:intergenic
ATCTTGAATAACGAGATAGT+GGG 0.646579 tig0018295:+18709 Msa1365490:CDS
TATTCACCAGATCATTATGA+GGG 0.649367 tig0018295:+18868 Msa1365490:CDS
TGTGGAACTTCCAACGAGCG+AGG 0.651120 tig0018295:+14721 Msa1365490:CDS
TTGAATAACGAGATAGTGGG+AGG 0.661822 tig0018295:+18712 Msa1365490:CDS
CCGGACTATCATTACAGATG+CGG 0.665544 tig0018295:-18515 Msa1365490:intergenic
CCAAATAAGATCACTAAACG+TGG 0.667609 tig0018295:+19117 Msa1365490:CDS
GATCATGTACCCAATTCCCA+TGG 0.672337 tig0018295:-17173 Msa1365490:intergenic
AATCTCCCAACAAATATGGG+GGG 0.678037 tig0018295:-19339 Msa1365490:intergenic
GCCCAGGATGACCATCATGT+CGG 0.678895 tig0018295:-19077 Msa1365490:intergenic
GTAGGCTGTGATCTGTACCA+TGG 0.685036 tig0018295:+17156 Msa1365490:intron
CTATTGCCAAACGAAGTCGT+GGG 0.691219 tig0018295:-14782 Msa1365490:intergenic
GGAATTATCAGAAGTCGTGG+AGG 0.703782 tig0018295:-14992 Msa1365490:intergenic
AATCAATGTTGTGTATTCTG+TGG 0.709727 tig0018295:+17409 Msa1365490:CDS
AGAATTGCCAGGGTAATGGG+AGG 0.713659 tig0018295:+17247 Msa1365490:CDS
CGTCACTTTGACAAGCCATG+AGG 0.722152 tig0018295:-18545 Msa1365490:intergenic
GTAGAGGTACCAAAGAATCG+GGG 0.738063 tig0018295:+18460 Msa1365490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTATTATTATT+AGG + tig0018295:17919-17938 Msa1365490:intron 0.0%
!!! AATTTATTTATTTATTTTTA+AGG + tig0018295:19656-19675 Msa1365490:three_prime_UTR 0.0%
!! AAAAATTAAAAAGAGAATAT+GGG - tig0018295:15466-15485 Msa1365490:intergenic 10.0%
!! TAAAAATTAAAAAGAGAATA+TGG - tig0018295:15467-15486 Msa1365490:intergenic 10.0%
!!! TTTCTTTTTATTAACATTTA+TGG - tig0018295:17860-17879 Msa1365490:intergenic 10.0%
!! TTAGATAAAATAGTAATGTT+GGG - tig0018295:15535-15554 Msa1365490:intergenic 15.0%
!! AAAAATTTCTTATTGTAAAC+AGG + tig0018295:17060-17079 Msa1365490:intron 15.0%
!! ATAAAATGATTTAGAGATTA+TGG + tig0018295:17480-17499 Msa1365490:intron 15.0%
!! AACAAATATAAAATACAAAC+AGG - tig0018295:17753-17772 Msa1365490:intergenic 15.0%
!!! GTTTGTATTTTATATTTGTT+TGG + tig0018295:17753-17772 Msa1365490:intron 15.0%
!!! TATTTTATATTTGTTTGGTT+TGG + tig0018295:17758-17777 Msa1365490:intron 15.0%
!! CTCTTATTATTATTGTATTA+TGG + tig0018295:17804-17823 Msa1365490:intron 15.0%
!! TTATTATTATTAGGTAAAAG+AGG + tig0018295:17934-17953 Msa1365490:intron 15.0%
!! CATATAAACATTTCTTTATT+AGG + tig0018295:18065-18084 Msa1365490:intron 15.0%
!!! ATATGCAAAGATATTATTTT+AGG + tig0018295:18491-18510 Msa1365490:CDS 15.0%
!! AGAAACAAAATAAAATAAAG+AGG - tig0018295:19507-19526 Msa1365490:intergenic 15.0%
!!! ATTTATTTATTTTTAAGGAC+TGG + tig0018295:19661-19680 Msa1365490:three_prime_UTR 15.0%
!!! TTTATTTATTTTTAAGGACT+GGG + tig0018295:19662-19681 Msa1365490:three_prime_UTR 15.0%
!! TAGATAAAATAGTAATGTTG+GGG - tig0018295:15534-15553 Msa1365490:intergenic 20.0%
!! GTTAGATAAAATAGTAATGT+TGG - tig0018295:15536-15555 Msa1365490:intergenic 20.0%
!!! ACTTAATAAACTAGTCTTTT+GGG - tig0018295:16221-16240 Msa1365490:intergenic 20.0%
!!! AAAAGACTAGTTTATTAAGT+GGG + tig0018295:16221-16240 Msa1365490:intron 20.0%
!!! TGATGTATAATTCAAAGTTT+TGG + tig0018295:16882-16901 Msa1365490:intron 20.0%
!!! ATTTGATCCTAGAAAATTTT+TGG + tig0018295:17326-17345 Msa1365490:CDS 20.0%
!! ATTTCTTTATTAGGTAAAAG+AGG + tig0018295:18074-18093 Msa1365490:intron 20.0%
!!! CTTTTTATTGGAATATACTT+TGG - tig0018295:18192-18211 Msa1365490:intergenic 20.0%
!!! ACATGCATTTTTCTTTTTAT+TGG - tig0018295:18204-18223 Msa1365490:intergenic 20.0%
!! TATTCATTTACACATACATA+GGG + tig0018295:18343-18362 Msa1365490:intron 20.0%
!! AAAATGACATTTAAAAAACC+TGG - tig0018295:19729-19748 Msa1365490:intergenic 20.0%
!!! ACGTTTCATGGATATTTTTA+CGG + tig0018295:14530-14549 Msa1365490:CDS 25.0%
! TCAATAGAAGCAACATTTAT+AGG - tig0018295:14593-14612 Msa1365490:intergenic 25.0%
! TTTAAAAAACAAGCTAGTGT+AGG - tig0018295:15108-15127 Msa1365490:intergenic 25.0%
!!! CTTGTTTTTTAAATGCTTCA+TGG + tig0018295:15115-15134 Msa1365490:intron 25.0%
! ATAGTAGTACAAAACAAGAA+TGG - tig0018295:15152-15171 Msa1365490:intergenic 25.0%
! AAAGAGATATCCTTTACAAA+GGG - tig0018295:15396-15415 Msa1365490:intergenic 25.0%
! AAAAGAGATATCCTTTACAA+AGG - tig0018295:15397-15416 Msa1365490:intergenic 25.0%
! TTAAAAAGAGAATATGGGAA+TGG - tig0018295:15461-15480 Msa1365490:intergenic 25.0%
!!! GAGTAACCTCTATTTTATTT+TGG + tig0018295:15839-15858 Msa1365490:intron 25.0%
! CAAAGACCAAAATAAAATAG+AGG - tig0018295:15848-15867 Msa1365490:intergenic 25.0%
!! TCTTTGTTTCAGTTATCAAT+TGG + tig0018295:15862-15881 Msa1365490:intron 25.0%
!! CTTTGTTTCAGTTATCAATT+GGG + tig0018295:15863-15882 Msa1365490:intron 25.0%
!!! CACTTTTATCTAGTTTATGT+GGG + tig0018295:15985-16004 Msa1365490:intron 25.0%
! ATTTAGTTGAGTACCTTAAT+CGG + tig0018295:16123-16142 Msa1365490:intron 25.0%
!!! CACTTAATAAACTAGTCTTT+TGG - tig0018295:16222-16241 Msa1365490:intergenic 25.0%
!!! CAAAAGACTAGTTTATTAAG+TGG + tig0018295:16220-16239 Msa1365490:intron 25.0%
! CAAAATTCCAGTAGATAAAA+GGG - tig0018295:16277-16296 Msa1365490:intergenic 25.0%
! TTAATTAGCAACTGAATCAA+CGG + tig0018295:16517-16536 Msa1365490:intron 25.0%
!!! TAATTTTGCTTTTGTACTTC+TGG + tig0018295:16543-16562 Msa1365490:intron 25.0%
!!! AATTTTGCTTTTGTACTTCT+GGG + tig0018295:16544-16563 Msa1365490:intron 25.0%
!!! GTATAATTCAAAGTTTTGGT+TGG + tig0018295:16886-16905 Msa1365490:intron 25.0%
! ATTATGAACTCTCTAACAAT+AGG + tig0018295:17551-17570 Msa1365490:intron 25.0%
! TTATGAACTCTCTAACAATA+GGG + tig0018295:17552-17571 Msa1365490:intron 25.0%
! GAGATGTGAATTTACTTTAT+TGG - tig0018295:17697-17716 Msa1365490:intergenic 25.0%
! TATTATTAGGTAAAAGAGGA+TGG + tig0018295:17938-17957 Msa1365490:intron 25.0%
! ATTATTAGGTAAAAGAGGAT+GGG + tig0018295:17939-17958 Msa1365490:intron 25.0%
! AAGTAAATGAGAATGAAATC+AGG + tig0018295:17987-18006 Msa1365490:intron 25.0%
!! CAACATTTCTTTTCTTAGTT+TGG + tig0018295:18141-18160 Msa1365490:intron 25.0%
!!! GCATCAAAAATTGTTTTATG+TGG + tig0018295:18240-18259 Msa1365490:intron 25.0%
! AAAACCATTTCATTATGAAC+CGG - tig0018295:18291-18310 Msa1365490:intergenic 25.0%
! GTATTCATTTACACATACAT+AGG + tig0018295:18342-18361 Msa1365490:intron 25.0%
! TAGAAGCTTAACTGAAAATA+TGG + tig0018295:18428-18447 Msa1365490:intron 25.0%
!! ACTGAAAATATGGTATTTTC+AGG + tig0018295:18438-18457 Msa1365490:intron 25.0%
! ATTTAATCATATCTCATGAG+AGG - tig0018295:19280-19299 Msa1365490:intergenic 25.0%
! TGGTCATTTGAAAAATAGAA+GGG - tig0018295:19314-19333 Msa1365490:intergenic 25.0%
! GTTTACTTTACATGATAGAT+AGG + tig0018295:19382-19401 Msa1365490:three_prime_UTR 25.0%
!! TTAAGAAAAGCATACTATAG+AGG + tig0018295:19467-19486 Msa1365490:three_prime_UTR 25.0%
! TTATAGAGAGAGGTAAAAAT+AGG + tig0018295:19585-19604 Msa1365490:three_prime_UTR 25.0%
AAAACAACAATCCAAGAAAG+TGG - tig0018295:14443-14462 Msa1365490:intergenic 30.0%
!!! TCTTGGATTGTTGTTTTAGT+AGG + tig0018295:14446-14465 Msa1365490:CDS 30.0%
GTAAAAATATCCATGAAACG+TGG - tig0018295:14531-14550 Msa1365490:intergenic 30.0%
!! CATGGATATTTTTACGGTAT+AGG + tig0018295:14536-14555 Msa1365490:CDS 30.0%
GAAGATTGTGAATCTAAAGA+CGG - tig0018295:14623-14642 Msa1365490:intergenic 30.0%
! TTCTTTACTTCACTCTCTTT+TGG + tig0018295:15201-15220 Msa1365490:intron 30.0%
TGTATTATTGCAAACTGAAC+TGG + tig0018295:15338-15357 Msa1365490:intron 30.0%
! GTCAATTTGATAGTTGTACA+TGG - tig0018295:15426-15445 Msa1365490:intergenic 30.0%
TCTAACTTCAAACTGTGATT+AGG + tig0018295:15550-15569 Msa1365490:intron 30.0%
!!! ATGAGTGTTTTTTTGTTAGG+TGG - tig0018295:15582-15601 Msa1365490:intergenic 30.0%
!!! GCTATGAGTGTTTTTTTGTT+AGG - tig0018295:15585-15604 Msa1365490:intergenic 30.0%
TGTATTACATGAAAAGTCTG+AGG + tig0018295:15620-15639 Msa1365490:intron 30.0%
GTATTACATGAAAAGTCTGA+GGG + tig0018295:15621-15640 Msa1365490:intron 30.0%
! TTGTCTATATTTTTCTCCGA+GGG + tig0018295:15761-15780 Msa1365490:intron 30.0%
GTACTAAAAACAAGCTAAAG+TGG - tig0018295:15812-15831 Msa1365490:intergenic 30.0%
TATCAATTGGGCTAATTAAG+TGG + tig0018295:15875-15894 Msa1365490:intron 30.0%
!! GCACTTTTATCTAGTTTATG+TGG + tig0018295:15984-16003 Msa1365490:intron 30.0%
CAATGACAGCATCATTTATT+AGG + tig0018295:16170-16189 Msa1365490:intron 30.0%
!!! AATAAACTAGTCTTTTGGGT+TGG - tig0018295:16217-16236 Msa1365490:intergenic 30.0%
CCAAAATTCCAGTAGATAAA+AGG - tig0018295:16278-16297 Msa1365490:intergenic 30.0%
! CCTTTTATCTACTGGAATTT+TGG + tig0018295:16275-16294 Msa1365490:intron 30.0%
! CTTGTGTTGCTATATATGTT+TGG + tig0018295:16990-17009 Msa1365490:intron 30.0%
TTCTTATTGTAAACAGGTGA+CGG + tig0018295:17066-17085 Msa1365490:intron 30.0%
CATGTATTGTTTGTGTAAAG+TGG - tig0018295:17207-17226 Msa1365490:intergenic 30.0%
CAATTCTCATAATCTTTGTC+AGG - tig0018295:17273-17292 Msa1365490:intergenic 30.0%
CTGACAAAGATTATGAGAAT+TGG + tig0018295:17271-17290 Msa1365490:CDS 30.0%
!!! ATTTTCTAGGATCAAATCGT+GGG - tig0018295:17323-17342 Msa1365490:intergenic 30.0%
!!! AATTTTCTAGGATCAAATCG+TGG - tig0018295:17324-17343 Msa1365490:intergenic 30.0%
! ATCAGCTCCAAAAATTTTCT+AGG - tig0018295:17336-17355 Msa1365490:intergenic 30.0%
!! TACACAACATTGATTCCATT+TGG - tig0018295:17404-17423 Msa1365490:intergenic 30.0%
AATCAATGTTGTGTATTCTG+TGG + tig0018295:17409-17428 Msa1365490:CDS 30.0%
TTATTAGGTAAAAGAGGATG+GGG + tig0018295:17940-17959 Msa1365490:intron 30.0%
TTTCATTCTCATTTACTTCC+TGG - tig0018295:17985-18004 Msa1365490:intergenic 30.0%
AAATGCAGAAATTGTTGTAC+TGG - tig0018295:18031-18050 Msa1365490:intergenic 30.0%
GGAACGTAATCAAATTGATT+TGG + tig0018295:18095-18114 Msa1365490:intron 30.0%
TATTGGAATATACTTTGGCT+GGG - tig0018295:18187-18206 Msa1365490:intergenic 30.0%
TTATTGGAATATACTTTGGC+TGG - tig0018295:18188-18207 Msa1365490:intergenic 30.0%
AAACCATTTCATTATGAACC+GGG - tig0018295:18290-18309 Msa1365490:intergenic 30.0%
!!! AATATGGTATTTTCAGGTAG+AGG + tig0018295:18444-18463 Msa1365490:intron 30.0%
TATCTTGAATAACGAGATAG+TGG + tig0018295:18708-18727 Msa1365490:CDS 30.0%
ATCTTGAATAACGAGATAGT+GGG + tig0018295:18709-18728 Msa1365490:CDS 30.0%
TATTCACCAGATCATTATGA+GGG + tig0018295:18868-18887 Msa1365490:CDS 30.0%
! TTTATTTGTAGCCTTTTCCA+TGG - tig0018295:19016-19035 Msa1365490:intergenic 30.0%
TAAATCGAAGTTGACGTTAA+TGG + tig0018295:19032-19051 Msa1365490:CDS 30.0%
! CACGTTTAGTGATCTTATTT+GGG - tig0018295:19119-19138 Msa1365490:intergenic 30.0%
ATCATCAAGAGAGAATATGA+AGG + tig0018295:19225-19244 Msa1365490:CDS 30.0%
GTGGTCATTTGAAAAATAGA+AGG - tig0018295:19315-19334 Msa1365490:intergenic 30.0%
TGTAAAGTAAACAGAACCAA+AGG - tig0018295:19374-19393 Msa1365490:intergenic 30.0%
AGATAGGATGTGTGTAATTA+AGG + tig0018295:19398-19417 Msa1365490:three_prime_UTR 30.0%
GATAGGATGTGTGTAATTAA+GGG + tig0018295:19399-19418 Msa1365490:three_prime_UTR 30.0%
!!! TTTATTTTTAAGGACTGGGA+TGG + tig0018295:19666-19685 Msa1365490:three_prime_UTR 30.0%
TCTGAGAAGTTAGATGTATC+TGG + tig0018295:14563-14582 Msa1365490:CDS 35.0%
TTAGATTCACAATCTTCCAC+TGG + tig0018295:14626-14645 Msa1365490:CDS 35.0%
!! CAATAGTAAGTCTAGTTCTG+TGG + tig0018295:14703-14722 Msa1365490:CDS 35.0%
GTTTGGCAATAGTGTAGATA+CGG + tig0018295:14793-14812 Msa1365490:CDS 35.0%
AACTTCAAGTGCAACTGTTT+CGG + tig0018295:14859-14878 Msa1365490:CDS 35.0%
GTAACCTGAATTAACTGAAC+CGG - tig0018295:15070-15089 Msa1365490:intergenic 35.0%
CTGTTCATTTCAGTTTCTCT+AGG - tig0018295:15289-15308 Msa1365490:intergenic 35.0%
CTTTACAAAGGGAAACTCTT+GGG - tig0018295:15385-15404 Msa1365490:intergenic 35.0%
AAGAGAATATGGGAATGGAA+AGG - tig0018295:15456-15475 Msa1365490:intergenic 35.0%
TTCTTGCATTTGAAGGATTC+AGG + tig0018295:15686-15705 Msa1365490:intron 35.0%
! GTTGTCTATATTTTTCTCCG+AGG + tig0018295:15760-15779 Msa1365490:intron 35.0%
CTAAAAACAAGCTAAAGTGG+TGG - tig0018295:15809-15828 Msa1365490:intergenic 35.0%
GTACTCAACTAAATACCGAT+TGG - tig0018295:16117-16136 Msa1365490:intergenic 35.0%
TATTAGGACTTATGTCCATG+AGG + tig0018295:16186-16205 Msa1365490:intron 35.0%
!! GGAATTTTGGTGTGTTTGTT+TGG + tig0018295:16288-16307 Msa1365490:intron 35.0%
!! TTTTGGTGTGTTTGTTTGGT+AGG + tig0018295:16292-16311 Msa1365490:intron 35.0%
! TTTGGTGTGTTTGTTTGGTA+GGG + tig0018295:16293-16312 Msa1365490:intron 35.0%
! GGTATTGTCATGATGATGTT+TGG + tig0018295:16447-16466 Msa1365490:intron 35.0%
GTTGAATTCACAGTAGTTTC+AGG + tig0018295:16835-16854 Msa1365490:intron 35.0%
! GTTTGAAATTACTCTGTGTG+AGG + tig0018295:17104-17123 Msa1365490:intron 35.0%
TATTGTCCATTCTGTTGTGT+AGG + tig0018295:17138-17157 Msa1365490:intron 35.0%
AATTGGGTACATGATCCATT+GGG + tig0018295:17180-17199 Msa1365490:CDS 35.0%
AAGATTATGAGAATTGGCGA+TGG + tig0018295:17277-17296 Msa1365490:CDS 35.0%
!!! AAATTTTTGGAGCTGATGAG+AGG + tig0018295:17339-17358 Msa1365490:CDS 35.0%
!!! AATTTTTGGAGCTGATGAGA+GGG + tig0018295:17340-17359 Msa1365490:CDS 35.0%
CCATGCAAAACAGATCAATA+AGG - tig0018295:17457-17476 Msa1365490:intergenic 35.0%
! CCTTATTGATCTGTTTTGCA+TGG + tig0018295:17454-17473 Msa1365490:intron 35.0%
GGTGATTTATTAGGTAAACC+AGG + tig0018295:17964-17983 Msa1365490:intron 35.0%
! AAAATGCATGTTTTGCCTCT+TGG + tig0018295:18213-18232 Msa1365490:intron 35.0%
ATTTCATTATGAACCGGGTA+TGG - tig0018295:18285-18304 Msa1365490:intergenic 35.0%
ATACCCGGTTCATAATGAAA+TGG + tig0018295:18284-18303 Msa1365490:intron 35.0%
ATCAAATGCATGCTGTTGAA+CGG - tig0018295:18317-18336 Msa1365490:intergenic 35.0%
GGATATGTTCCATTAACTTC+GGG - tig0018295:18630-18649 Msa1365490:intergenic 35.0%
GGGATATGTTCCATTAACTT+CGG - tig0018295:18631-18650 Msa1365490:intergenic 35.0%
!! ACATATCCCAAATTTTGACG+TGG + tig0018295:18642-18661 Msa1365490:CDS 35.0%
CTCATAATGATCTGGTGAAT+AGG - tig0018295:18869-18888 Msa1365490:intergenic 35.0%
CTATTCACCAGATCATTATG+AGG + tig0018295:18867-18886 Msa1365490:CDS 35.0%
! TAGTGATCTTATTTGGGTCA+GGG - tig0018295:19113-19132 Msa1365490:intergenic 35.0%
! TTAGTGATCTTATTTGGGTC+AGG - tig0018295:19114-19133 Msa1365490:intergenic 35.0%
CCACGTTTAGTGATCTTATT+TGG - tig0018295:19120-19139 Msa1365490:intergenic 35.0%
CCAAATAAGATCACTAAACG+TGG + tig0018295:19117-19136 Msa1365490:CDS 35.0%
ATCAAGAGAGAATATGAAGG+TGG + tig0018295:19228-19247 Msa1365490:CDS 35.0%
TGCAATCTCCCAACAAATAT+GGG - tig0018295:19345-19364 Msa1365490:intergenic 35.0%
GTGTAATTAAGGGAAGTTCA+AGG + tig0018295:19409-19428 Msa1365490:three_prime_UTR 35.0%
! AGGTCTTATACGGTATATAG+AGG + tig0018295:19429-19448 Msa1365490:three_prime_UTR 35.0%
! AGAAAAGCATACTATAGAGG+TGG + tig0018295:19470-19489 Msa1365490:three_prime_UTR 35.0%
! GAAAAGCATACTATAGAGGT+GGG + tig0018295:19471-19490 Msa1365490:three_prime_UTR 35.0%
! AAAAGCATACTATAGAGGTG+GGG + tig0018295:19472-19491 Msa1365490:three_prime_UTR 35.0%
TGTGTAGACTTTATAGAGAG+AGG + tig0018295:19575-19594 Msa1365490:three_prime_UTR 35.0%
AGAGAGGTAAAAATAGGTCT+CGG + tig0018295:19591-19610 Msa1365490:three_prime_UTR 35.0%
CACAATCACAATCACATACT+TGG - tig0018295:19753-19772 Msa1365490:intergenic 35.0%
ACAATCCAAGAAAGTGGTCT+TGG - tig0018295:14437-14456 Msa1365490:intergenic 40.0%
ATTGCTATCACTAGTACCAG+TGG - tig0018295:14645-14664 Msa1365490:intergenic 40.0%
AACCGATACCACTTCAAACT+CGG + tig0018295:14673-14692 Msa1365490:CDS 40.0%
! TTCCGAGTTTGAAGTGGTAT+CGG - tig0018295:14678-14697 Msa1365490:intergenic 40.0%
TTGAGCAGGCAAACTAGTAT+TGG - tig0018295:14819-14838 Msa1365490:intergenic 40.0%
! ACTTGTGAATTTGCTTGAGC+AGG - tig0018295:14833-14852 Msa1365490:intergenic 40.0%
TCTAATACCACCCGTCAAAT+TGG - tig0018295:14906-14925 Msa1365490:intergenic 40.0%
! GTCATTTGAAACCGTAGAAG+GGG - tig0018295:14938-14957 Msa1365490:intergenic 40.0%
! GGTCATTTGAAACCGTAGAA+GGG - tig0018295:14939-14958 Msa1365490:intergenic 40.0%
! TGGTCATTTGAAACCGTAGA+AGG - tig0018295:14940-14959 Msa1365490:intergenic 40.0%
TGGTGTGATTATAGCACCAA+AGG + tig0018295:14966-14985 Msa1365490:intron 40.0%
TGTGGAATTATCAGAAGTCG+TGG - tig0018295:14998-15017 Msa1365490:intergenic 40.0%
!! TTCTGGAACAGCTGTTAATG+TGG - tig0018295:15016-15035 Msa1365490:intergenic 40.0%
!! TCAGGCTTCTTTACTGATTC+TGG - tig0018295:15033-15052 Msa1365490:intergenic 40.0%
TGAATTAACTGAACCGGCAT+TGG - tig0018295:15064-15083 Msa1365490:intergenic 40.0%
!! AATGCCGGTTCAGTTAATTC+AGG + tig0018295:15063-15082 Msa1365490:CDS 40.0%
CCTTTACAAAGGGAAACTCT+TGG - tig0018295:15386-15405 Msa1365490:intergenic 40.0%
CCAAGAGTTTCCCTTTGTAA+AGG + tig0018295:15383-15402 Msa1365490:intron 40.0%
AGAATATGGGAATGGAAAGG+AGG - tig0018295:15453-15472 Msa1365490:intergenic 40.0%
TTACATGAAAAGTCTGAGGG+AGG + tig0018295:15624-15643 Msa1365490:intron 40.0%
TACATGAAAAGTCTGAGGGA+GGG + tig0018295:15625-15644 Msa1365490:intron 40.0%
ATCCTTCAAATGCAAGAAGC+AGG - tig0018295:15684-15703 Msa1365490:intergenic 40.0%
GGAAATCTCATTAAAGCCCT+CGG - tig0018295:15780-15799 Msa1365490:intergenic 40.0%
TTGTTAGACTTAAGCCCATG+AGG + tig0018295:15898-15917 Msa1365490:intron 40.0%
!!! ATGGACTGGTCTTTTGAGTT+GGG - tig0018295:15928-15947 Msa1365490:intergenic 40.0%
!!! AATGGACTGGTCTTTTGAGT+TGG - tig0018295:15929-15948 Msa1365490:intergenic 40.0%
ACTCAAAAGACCAGTCCATT+AGG + tig0018295:15929-15948 Msa1365490:intron 40.0%
AAAAGACCAGTCCATTAGGT+TGG + tig0018295:15933-15952 Msa1365490:intron 40.0%
!! CTAGATAAAAGTGCTCAGTG+TGG - tig0018295:15978-15997 Msa1365490:intergenic 40.0%
AGTGAAACTGACGTAGAAGT+CGG - tig0018295:16043-16062 Msa1365490:intergenic 40.0%
CTACGTCAGTTTCACTCTAT+CGG + tig0018295:16047-16066 Msa1365490:intron 40.0%
TGATGCTGTCATTGAGAGTT+GGG - tig0018295:16164-16183 Msa1365490:intergenic 40.0%
ATGATGCTGTCATTGAGAGT+TGG - tig0018295:16165-16184 Msa1365490:intergenic 40.0%
GTGCTTAGCAACAAGAAACA+AGG - tig0018295:16485-16504 Msa1365490:intergenic 40.0%
CAGAAAAAACCCACTTGAGT+TGG + tig0018295:16621-16640 Msa1365490:intron 40.0%
! TCACAGTAGTTTCAGGTGTA+TGG + tig0018295:16842-16861 Msa1365490:intron 40.0%
TGTGAGTGCATGTATATGTG+AGG - tig0018295:16926-16945 Msa1365490:intergenic 40.0%
AGTGTGAGTATGTATGTGTG+CGG - tig0018295:16954-16973 Msa1365490:intergenic 40.0%
! CTCTGTGTGAGGCTTTTAAT+TGG + tig0018295:17115-17134 Msa1365490:intron 40.0%
TGATCTGTACCATGGGAATT+GGG + tig0018295:17164-17183 Msa1365490:CDS 40.0%
GAATTGGGTACATGATCCAT+TGG + tig0018295:17179-17198 Msa1365490:CDS 40.0%
TTTGTGTAAAGTGGTCCCAA+TGG - tig0018295:17198-17217 Msa1365490:intergenic 40.0%
TTCTGCATCTGTGTCAATAC+AGG - tig0018295:17231-17250 Msa1365490:intergenic 40.0%
TGAATCTCCAATGAAAGCCA+AGG - tig0018295:17370-17389 Msa1365490:intergenic 40.0%
TTCAGTAGCTCGAAACCAAA+TGG + tig0018295:17386-17405 Msa1365490:CDS 40.0%
AATGTTGTGTATTCTGTGGC+AGG + tig0018295:17413-17432 Msa1365490:CDS 40.0%
TGATTCGATTATGCGTGTCT+CGG - tig0018295:17641-17660 Msa1365490:intergenic 40.0%
GAAACAACTTCTGCAACATG+TGG + tig0018295:17894-17913 Msa1365490:intron 40.0%
GAATATACTTTGGCTGGGAA+AGG - tig0018295:18182-18201 Msa1365490:intergenic 40.0%
! ATTTTTGATGCAGTGCCAAG+AGG - tig0018295:18231-18250 Msa1365490:intergenic 40.0%
!! AGGTAGAGGTACCAAAGAAT+CGG + tig0018295:18458-18477 Msa1365490:intron 40.0%
TTACGATTTCCCCGATTCTT+TGG - tig0018295:18472-18491 Msa1365490:intergenic 40.0%
CTGTAATGATAGTCCGGATA+TGG + tig0018295:18521-18540 Msa1365490:CDS 40.0%
GGACAACCACGTCAAAATTT+GGG - tig0018295:18651-18670 Msa1365490:intergenic 40.0%
AGGACAACCACGTCAAAATT+TGG - tig0018295:18652-18671 Msa1365490:intergenic 40.0%
!! TTGAATAACGAGATAGTGGG+AGG + tig0018295:18712-18731 Msa1365490:CDS 40.0%
GCTACACATCCAACTTACAA+AGG + tig0018295:18826-18845 Msa1365490:CDS 40.0%
ATTGCGAGACCTTTGTAAGT+TGG - tig0018295:18838-18857 Msa1365490:intergenic 40.0%
ACAAAGGTCTCGCAATTGTT+CGG + tig0018295:18842-18861 Msa1365490:CDS 40.0%
CTTGGTGAACTGGTAGAAAA+CGG + tig0018295:18943-18962 Msa1365490:CDS 40.0%
TTGGTGAACTGGTAGAAAAC+GGG + tig0018295:18944-18963 Msa1365490:CDS 40.0%
AAATACGATGCATGAGCAAC+AGG + tig0018295:18972-18991 Msa1365490:CDS 40.0%
TACCTGGAATGAACTTGTCT+TGG + tig0018295:19200-19219 Msa1365490:CDS 40.0%
TTCCAAGACAAGTTCATTCC+AGG - tig0018295:19205-19224 Msa1365490:intergenic 40.0%
AATCTCCCAACAAATATGGG+GGG - tig0018295:19342-19361 Msa1365490:intergenic 40.0%
CAATCTCCCAACAAATATGG+GGG - tig0018295:19343-19362 Msa1365490:intergenic 40.0%
GCAATCTCCCAACAAATATG+GGG - tig0018295:19344-19363 Msa1365490:intergenic 40.0%
GTGCAATCTCCCAACAAATA+TGG - tig0018295:19346-19365 Msa1365490:intergenic 40.0%
! GGGAAGTTCAAGGTCTTATA+CGG + tig0018295:19419-19438 Msa1365490:three_prime_UTR 40.0%
AAAGCATACTATAGAGGTGG+GGG + tig0018295:19473-19492 Msa1365490:three_prime_UTR 40.0%
ATGTGTTCATGAGCAATTCC+AGG + tig0018295:19708-19727 Msa1365490:three_prime_UTR 40.0%
ACCATCCAAGACCACTTTCT+TGG + tig0018295:14429-14448 Msa1365490:CDS 45.0%
! TCCAAGAAAGTGGTCTTGGA+TGG - tig0018295:14433-14452 Msa1365490:intergenic 45.0%
! GTTCTTGTTTCATCGCCGAT+TGG + tig0018295:14503-14522 Msa1365490:CDS 45.0%
GTCTACTTCCGAGTTTGAAG+TGG - tig0018295:14684-14703 Msa1365490:intergenic 45.0%
TTATTGACATCCTCGCTCGT+TGG - tig0018295:14734-14753 Msa1365490:intergenic 45.0%
CTATTGCCAAACGAAGTCGT+GGG - tig0018295:14785-14804 Msa1365490:intergenic 45.0%
ACTATTGCCAAACGAAGTCG+TGG - tig0018295:14786-14805 Msa1365490:intergenic 45.0%
!! TGCCGGTTCTTCCAATTTGA+CGG + tig0018295:14892-14911 Msa1365490:intron 45.0%
ACCCGTCAAATTGGAAGAAC+CGG - tig0018295:14897-14916 Msa1365490:intergenic 45.0%
GAACTGAAGAACCCCTTCTA+CGG + tig0018295:14924-14943 Msa1365490:intron 45.0%
ACGGTTTCAAATGACCAGTC+CGG + tig0018295:14943-14962 Msa1365490:intron 45.0%
!! TGGTGCTATAATCACACCAC+CGG - tig0018295:14965-14984 Msa1365490:intergenic 45.0%
GGAATTATCAGAAGTCGTGG+AGG - tig0018295:14995-15014 Msa1365490:intergenic 45.0%
GTCCTGCTTCTTGCATTTGA+AGG + tig0018295:15679-15698 Msa1365490:intron 45.0%
!! AAGCTAAAGTGGTGGATGCA+AGG - tig0018295:15801-15820 Msa1365490:intergenic 45.0%
!! TTGAGTTGGGCTATCCTCAT+GGG - tig0018295:15915-15934 Msa1365490:intergenic 45.0%
!! TTTGAGTTGGGCTATCCTCA+TGG - tig0018295:15916-15935 Msa1365490:intergenic 45.0%
! TAGAAGTCGGCTCTTAAAGG+GGG - tig0018295:16030-16049 Msa1365490:intergenic 45.0%
! GTAGAAGTCGGCTCTTAAAG+GGG - tig0018295:16031-16050 Msa1365490:intergenic 45.0%
! CGTAGAAGTCGGCTCTTAAA+GGG - tig0018295:16032-16051 Msa1365490:intergenic 45.0%
! ACGTAGAAGTCGGCTCTTAA+AGG - tig0018295:16033-16052 Msa1365490:intergenic 45.0%
! ACAGAAAGGGCTACCGATTA+AGG - tig0018295:16139-16158 Msa1365490:intergenic 45.0%
TGAGAGTTGGGTCACAGAAA+GGG - tig0018295:16152-16171 Msa1365490:intergenic 45.0%
TTGAGAGTTGGGTCACAGAA+AGG - tig0018295:16153-16172 Msa1365490:intergenic 45.0%
! CATAGCTTAAGTACCGCACT+CGG + tig0018295:16251-16270 Msa1365490:intron 45.0%
CCAGGACAGAAGTAATGGTT+CGG - tig0018295:16370-16389 Msa1365490:intergenic 45.0%
GACTCTCTAATCACCATGAC+AGG + tig0018295:16421-16440 Msa1365490:intron 45.0%
TCTAATCACCATGACAGGAG+TGG + tig0018295:16426-16445 Msa1365490:intron 45.0%
TGACAATACCACTCCTGTCA+TGG - tig0018295:16437-16456 Msa1365490:intergenic 45.0%
! TGCTTTTGTACTTCTGGGCA+AGG + tig0018295:16549-16568 Msa1365490:intron 45.0%
!! AAAACCCACTTGAGTTGGTC+TGG + tig0018295:16626-16645 Msa1365490:intron 45.0%
ATCAAACCTGAGACCTTGAG+AGG - tig0018295:16682-16701 Msa1365490:intergenic 45.0%
GTCTCAGGTTTGATTCTCTC+CGG + tig0018295:16688-16707 Msa1365490:intron 45.0%
! ATTCTCTCCGGTGCCAATTT+CGG + tig0018295:16700-16719 Msa1365490:intron 45.0%
GTGTGAGTATGTATGTGTGC+GGG - tig0018295:16953-16972 Msa1365490:intergenic 45.0%
CAACACAAGTGTGAGTGTGT+CGG - tig0018295:16979-16998 Msa1365490:intergenic 45.0%
TCACAGCCTACACAACAGAA+TGG - tig0018295:17147-17166 Msa1365490:intergenic 45.0%
TAGGCTGTGATCTGTACCAT+GGG + tig0018295:17157-17176 Msa1365490:intron 45.0%
GTGATCTGTACCATGGGAAT+TGG + tig0018295:17163-17182 Msa1365490:CDS 45.0%
GATCATGTACCCAATTCCCA+TGG - tig0018295:17176-17195 Msa1365490:intergenic 45.0%
ACACAGATGCAGAATTGCCA+GGG + tig0018295:17237-17256 Msa1365490:CDS 45.0%
ATGCAGAATTGCCAGGGTAA+TGG + tig0018295:17243-17262 Msa1365490:CDS 45.0%
TGCAGAATTGCCAGGGTAAT+GGG + tig0018295:17244-17263 Msa1365490:CDS 45.0%
GAACTCTCTAACAATAGGGC+TGG + tig0018295:17556-17575 Msa1365490:intron 45.0%
TTAGGTAAAAGAGGATGGGG+AGG + tig0018295:17943-17962 Msa1365490:intron 45.0%
GGATGGGGAGGTGATTTATT+AGG + tig0018295:17955-17974 Msa1365490:intron 45.0%
TGCACACACAAGCATGGATA+TGG - tig0018295:18373-18392 Msa1365490:intergenic 45.0%
TATCCATGCTTGTGTGTGCA+TGG + tig0018295:18373-18392 Msa1365490:intron 45.0%
!! GGTAGAGGTACCAAAGAATC+GGG + tig0018295:18459-18478 Msa1365490:intron 45.0%
!! GTAGAGGTACCAAAGAATCG+GGG + tig0018295:18460-18479 Msa1365490:CDS 45.0%
CCGGACTATCATTACAGATG+CGG - tig0018295:18518-18537 Msa1365490:intergenic 45.0%
CCGCATCTGTAATGATAGTC+CGG + tig0018295:18515-18534 Msa1365490:CDS 45.0%
CCAGCTGGAGCATAATCAAA+TGG - tig0018295:18577-18596 Msa1365490:intergenic 45.0%
CCATTTGATTATGCTCCAGC+TGG + tig0018295:18574-18593 Msa1365490:CDS 45.0%
TTCCATTAACTTCGGGTCAG+GGG - tig0018295:18623-18642 Msa1365490:intergenic 45.0%
GTTCCATTAACTTCGGGTCA+GGG - tig0018295:18624-18643 Msa1365490:intergenic 45.0%
TGTTCCATTAACTTCGGGTC+AGG - tig0018295:18625-18644 Msa1365490:intergenic 45.0%
TTGTCCTTTCTTCCGGTCAT+TGG + tig0018295:18665-18684 Msa1365490:CDS 45.0%
CAAACCAATGACCGGAAGAA+AGG - tig0018295:18672-18691 Msa1365490:intergenic 45.0%
CTGCTTAGCAAACCAATGAC+CGG - tig0018295:18680-18699 Msa1365490:intergenic 45.0%
!! AGATAGTGGGAGGACAGTTA+TGG + tig0018295:18722-18741 Msa1365490:CDS 45.0%
TTCATCTGCTTGGACTTGTC+TGG - tig0018295:18751-18770 Msa1365490:intergenic 45.0%
AGACAAGTCCAAGCAGATGA+AGG + tig0018295:18750-18769 Msa1365490:CDS 45.0%
GTTGTTGACCTTCATCTGCT+TGG - tig0018295:18761-18780 Msa1365490:intergenic 45.0%
TCACCAGATCATTATGAGGG+TGG + tig0018295:18871-18890 Msa1365490:CDS 45.0%
AAGGTTAAGCCTGTTGCACT+TGG + tig0018295:18925-18944 Msa1365490:CDS 45.0%
ATGCATGAGCAACAGGTTAC+AGG + tig0018295:18979-18998 Msa1365490:CDS 45.0%
! TTTTAACCGCGCCATGGAAA+AGG + tig0018295:19002-19021 Msa1365490:CDS 45.0%
GCGTTTCAATACCGACATGA+TGG + tig0018295:19066-19085 Msa1365490:CDS 45.0%
!! AGTTCATTCCAGGTATCGAC+AGG - tig0018295:19195-19214 Msa1365490:intergenic 45.0%
AACAAATATGGGGGGGTAAG+TGG - tig0018295:19334-19353 Msa1365490:intergenic 45.0%
ACTTACCCCCCCATATTTGT+TGG + tig0018295:19333-19352 Msa1365490:three_prime_UTR 45.0%
CTTACCCCCCCATATTTGTT+GGG + tig0018295:19334-19353 Msa1365490:three_prime_UTR 45.0%
ATCTCCCAACAAATATGGGG+GGG - tig0018295:19341-19360 Msa1365490:intergenic 45.0%
!!! TTTTTAAAAATTTGAATAAT+TGG - tig0018295:16815-16834 Msa1365490:intergenic 5.0%
CCATGAAACGTGGCACCAAT+CGG - tig0018295:14521-14540 Msa1365490:intergenic 50.0%
!! AACGAAGTCGTGGGTTTTGG+TGG - tig0018295:14776-14795 Msa1365490:intergenic 50.0%
! CCAAACGAAGTCGTGGGTTT+TGG - tig0018295:14779-14798 Msa1365490:intergenic 50.0%
CCAAAACCCACGACTTCGTT+TGG + tig0018295:14776-14795 Msa1365490:CDS 50.0%
GCAACTGTTTCGGTTGAAGC+AGG + tig0018295:14869-14888 Msa1365490:CDS 50.0%
! GCCGGTTCTTCCAATTTGAC+GGG + tig0018295:14893-14912 Msa1365490:intron 50.0%
GGTTCTTCCAATTTGACGGG+TGG + tig0018295:14896-14915 Msa1365490:intron 50.0%
GTTTCAAATGACCAGTCCGG+TGG + tig0018295:14946-14965 Msa1365490:intron 50.0%
CTATAATCACACCACCGGAC+TGG - tig0018295:14960-14979 Msa1365490:intergenic 50.0%
GAAGTCGTGGAGGTTTCCTT+TGG - tig0018295:14985-15004 Msa1365490:intergenic 50.0%
CATGAGGCTCTCCAACCTAA+TGG - tig0018295:15947-15966 Msa1365490:intergenic 50.0%
!! CATTAGGTTGGAGAGCCTCA+TGG + tig0018295:15945-15964 Msa1365490:intron 50.0%
CAGTGTGGTACTAAGCCATG+AGG - tig0018295:15963-15982 Msa1365490:intergenic 50.0%
! AAGGGGGTGATGGCAATGTT+AGG - tig0018295:16014-16033 Msa1365490:intergenic 50.0%
AAGAGGAAAGGGCTACCGTT+GGG - tig0018295:16079-16098 Msa1365490:intergenic 50.0%
AAAGAGGAAAGGGCTACCGT+TGG - tig0018295:16080-16099 Msa1365490:intergenic 50.0%
AACGGTAGCCCTTTCCTCTT+TGG + tig0018295:16079-16098 Msa1365490:intron 50.0%
TGAAGCCGCCAAAGAGGAAA+GGG - tig0018295:16090-16109 Msa1365490:intergenic 50.0%
!! TTTGGGTTGGACTCTCCTCA+TGG - tig0018295:16204-16223 Msa1365490:intergenic 50.0%
GTAGATAAAAGGGCCGAGTG+CGG - tig0018295:16267-16286 Msa1365490:intergenic 50.0%
! CACTCGGCCCTTTTATCTAC+TGG + tig0018295:16267-16286 Msa1365490:intron 50.0%
CCGAACCATTACTTCTGTCC+TGG + tig0018295:16367-16386 Msa1365490:intron 50.0%
GAAGGCCAGGACAGAAGTAA+TGG - tig0018295:16375-16394 Msa1365490:intergenic 50.0%
! TTACTTCTGTCCTGGCCTTC+TGG + tig0018295:16375-16394 Msa1365490:intron 50.0%
! TACTTCTGTCCTGGCCTTCT+GGG + tig0018295:16376-16395 Msa1365490:intron 50.0%
CGAGTGCAAACTATCCCAGA+AGG - tig0018295:16393-16412 Msa1365490:intergenic 50.0%
! GGATAGTTTGCACTCGAGTC+TGG + tig0018295:16397-16416 Msa1365490:intron 50.0%
ACCACCAGACCAACTCAAGT+GGG - tig0018295:16633-16652 Msa1365490:intergenic 50.0%
!! TTGAGTTGGTCTGGTGGTGT+TGG + tig0018295:16635-16654 Msa1365490:intron 50.0%
CCAAACTAGCCCACCGAAAT+TGG - tig0018295:16716-16735 Msa1365490:intergenic 50.0%
!! CCAATTTCGGTGGGCTAGTT+TGG + tig0018295:16713-16732 Msa1365490:intron 50.0%
GTAGGCTGTGATCTGTACCA+TGG + tig0018295:17156-17175 Msa1365490:intron 50.0%
GACACAGATGCAGAATTGCC+AGG + tig0018295:17236-17255 Msa1365490:CDS 50.0%
!! AGAATTGCCAGGGTAATGGG+AGG + tig0018295:17247-17266 Msa1365490:CDS 50.0%
CGTGGGATGTCACACTGAAA+GGG - tig0018295:17306-17325 Msa1365490:intergenic 50.0%
TCGTGGGATGTCACACTGAA+AGG - tig0018295:17307-17326 Msa1365490:intergenic 50.0%
! GGGAAGACCTTGGCTTTCAT+TGG + tig0018295:17360-17379 Msa1365490:CDS 50.0%
TGCTGCATATGCACCATACC+CGG + tig0018295:18269-18288 Msa1365490:intron 50.0%
TAGTCCGGATATGGTCCTCA+TGG + tig0018295:18530-18549 Msa1365490:CDS 50.0%
CAAGCCATGAGGACCATATC+CGG - tig0018295:18537-18556 Msa1365490:intergenic 50.0%
! CGTCACTTTGACAAGCCATG+AGG - tig0018295:18548-18567 Msa1365490:intergenic 50.0%
TGATTATGCTCCAGCTGGTG+TGG + tig0018295:18579-18598 Msa1365490:CDS 50.0%
GACGTGGTTGTCCTTTCTTC+CGG + tig0018295:18658-18677 Msa1365490:CDS 50.0%
TAGTGGGAGGACAGTTATGG+TGG + tig0018295:18725-18744 Msa1365490:CDS 50.0%
GCTCCACCCTCATAATGATC+TGG - tig0018295:18877-18896 Msa1365490:intergenic 50.0%
ATCATTATGAGGGTGGAGCC+TGG + tig0018295:18878-18897 Msa1365490:CDS 50.0%
ACCAGTTCACCAAGTGCAAC+AGG - tig0018295:18937-18956 Msa1365490:intergenic 50.0%
!! TACAGGTTTTAACCGCGCCA+TGG + tig0018295:18996-19015 Msa1365490:CDS 50.0%
! TTGTAGCCTTTTCCATGGCG+CGG - tig0018295:19011-19030 Msa1365490:intergenic 50.0%
TACCGACATGATGGTCATCC+TGG + tig0018295:19075-19094 Msa1365490:CDS 50.0%
ACCGACATGATGGTCATCCT+GGG + tig0018295:19076-19095 Msa1365490:CDS 50.0%
ATCACTAAACGTGGCCCAGA+TGG + tig0018295:19126-19145 Msa1365490:CDS 50.0%
GGAGATTGCACTCACACCTT+TGG + tig0018295:19355-19374 Msa1365490:three_prime_UTR 50.0%
!! CCGATTGGTGCCACGTTTCA+TGG + tig0018295:14518-14537 Msa1365490:CDS 55.0%
TGTGGAACTTCCAACGAGCG+AGG + tig0018295:14721-14740 Msa1365490:CDS 55.0%
GTTTCGGTTGAAGCAGGTGC+CGG + tig0018295:14875-14894 Msa1365490:intron 55.0%
CCTGACAACGCATCCAATGC+CGG + tig0018295:15048-15067 Msa1365490:CDS 55.0%
! GGCTCTCCAACCTAATGGAC+TGG - tig0018295:15942-15961 Msa1365490:intergenic 55.0%
TCGGCTCTTAAAGGGGGTGA+TGG - tig0018295:16024-16043 Msa1365490:intergenic 55.0%
!! CTCTATCGGCACTGACCCAA+CGG + tig0018295:16061-16080 Msa1365490:intron 55.0%
GGTAGCCCTTTCCTCTTTGG+CGG + tig0018295:16082-16101 Msa1365490:intron 55.0%
GTGAAGCCGCCAAAGAGGAA+AGG - tig0018295:16091-16110 Msa1365490:intergenic 55.0%
TGGCGGCTTCACTCACCAAT+CGG + tig0018295:16099-16118 Msa1365490:intron 55.0%
GCAAACTATCCCAGAAGGCC+AGG - tig0018295:16388-16407 Msa1365490:intergenic 55.0%
!! ACCCACTTGAGTTGGTCTGG+TGG + tig0018295:16629-16648 Msa1365490:intron 55.0%
CACCACCAGACCAACTCAAG+TGG - tig0018295:16634-16653 Msa1365490:intergenic 55.0%
!! TTGGTCTGGTGGTGTTGGCT+TGG + tig0018295:16640-16659 Msa1365490:intron 55.0%
!! TGGTCTGGTGGTGTTGGCTT+GGG + tig0018295:16641-16660 Msa1365490:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + tig0018295:16673-16692 Msa1365490:intron 55.0%
! TCTCCGGTGCCAATTTCGGT+GGG + tig0018295:16704-16723 Msa1365490:intron 55.0%
TAGCCCACCGAAATTGGCAC+CGG - tig0018295:16710-16729 Msa1365490:intergenic 55.0%
GCTGATGAGAGGGAAGACCT+TGG + tig0018295:17350-17369 Msa1365490:CDS 55.0%
GCACCATGCACACACAAGCA+TGG - tig0018295:18379-18398 Msa1365490:intergenic 55.0%
TGGAGCTTATCCACACCAGC+TGG - tig0018295:18592-18611 Msa1365490:intergenic 55.0%
TGCCCCTGACCCGAAGTTAA+TGG + tig0018295:18618-18637 Msa1365490:CDS 55.0%
! GCCTGTTGCACTTGGTGAAC+TGG + tig0018295:18933-18952 Msa1365490:CDS 55.0%
GCCCAGGATGACCATCATGT+CGG - tig0018295:19080-19099 Msa1365490:intergenic 55.0%
ATGGTCATCCTGGGCCTTAC+AGG + tig0018295:19085-19104 Msa1365490:CDS 55.0%
TTTGGGTCAGGGCTCCTGTA+AGG - tig0018295:19102-19121 Msa1365490:intergenic 55.0%
CTAAACGTGGCCCAGATGGA+AGG + tig0018295:19130-19149 Msa1365490:CDS 55.0%
CAGTGCAAGCAATCCTGTGG+CGG - tig0018295:19159-19178 Msa1365490:intergenic 55.0%
CACCAGTGCAAGCAATCCTG+TGG - tig0018295:19162-19181 Msa1365490:intergenic 55.0%
!! TTCCAGGTATCGACAGGACC+TGG - tig0018295:19189-19208 Msa1365490:intergenic 55.0%
! CCGGCATTGGATGCGTTGTC+AGG - tig0018295:15051-15070 Msa1365490:intergenic 60.0%
GGTGAGTGAAGCCGCCAAAG+AGG - tig0018295:16096-16115 Msa1365490:intergenic 60.0%
!! GTGGTGTTGGCTTGGGACCT+CGG + tig0018295:16648-16667 Msa1365490:intron 60.0%
! CTTGAGAGGAGCACACTCCG+AGG - tig0018295:16668-16687 Msa1365490:intergenic 60.0%
CTCGGAGTGTGCTCCTCTCA+AGG + tig0018295:16666-16685 Msa1365490:intron 60.0%
! CTCTCCGGTGCCAATTTCGG+TGG + tig0018295:16703-16722 Msa1365490:intron 60.0%
TGTCAGGCCTCCCATTACCC+TGG - tig0018295:17257-17276 Msa1365490:intergenic 60.0%
!! TCGGGTCAGGGGCATCAAGA+TGG - tig0018295:18612-18631 Msa1365490:intergenic 60.0%
AACACCGGTGGGTCATGCAC+TGG + tig0018295:18901-18920 Msa1365490:CDS 60.0%
ACACCGGTGGGTCATGCACT+GGG + tig0018295:18902-18921 Msa1365490:CDS 60.0%
CTTCCCAGTGCATGACCCAC+CGG - tig0018295:18908-18927 Msa1365490:intergenic 60.0%
TGCAAGCAATCCTGTGGCGG+TGG - tig0018295:19156-19175 Msa1365490:intergenic 60.0%
CGCCACAGGATTGCTTGCAC+TGG + tig0018295:19157-19176 Msa1365490:CDS 60.0%
! TGCTTGCACTGGTGCATGCC+AGG + tig0018295:19168-19187 Msa1365490:CDS 60.0%
TGCCAGGTCCTGTCGATACC+TGG + tig0018295:19184-19203 Msa1365490:CDS 60.0%
GAGGGTGGAGCCTGGAACAC+CGG + tig0018295:18886-18905 Msa1365490:CDS 65.0%
GTGGAGCCTGGAACACCGGT+GGG + tig0018295:18890-18909 Msa1365490:CDS 65.0%
GCATGACCCACCGGTGTTCC+AGG - tig0018295:18899-18918 Msa1365490:intergenic 65.0%
CGGTGGGTCATGCACTGGGA+AGG + tig0018295:18906-18925 Msa1365490:CDS 65.0%
TCAGGGCTCCTGTAAGGCCC+AGG - tig0018295:19096-19115 Msa1365490:intergenic 65.0%
GTGGCGGTGGCCTTCCATCT+GGG - tig0018295:19143-19162 Msa1365490:intergenic 65.0%
TGTGGCGGTGGCCTTCCATC+TGG - tig0018295:19144-19163 Msa1365490:intergenic 65.0%
AGATGGAAGGCCACCGCCAC+AGG + tig0018295:19143-19162 Msa1365490:CDS 65.0%
GGTGGAGCCTGGAACACCGG+TGG + tig0018295:18889-18908 Msa1365490:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018295 gene 14422 19783 14422 ID=Msa1365490;Name=Msa1365490
tig0018295 mRNA 14422 19783 14422 ID=Msa1365490-mRNA-1;Parent=Msa1365490;Name=Msa1365490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.66|0.5|1|1|1|4|520|550
tig0018295 exon 14422 14890 14422 ID=Msa1365490-mRNA-1:exon:14587;Parent=Msa1365490-mRNA-1
tig0018295 exon 14980 15084 14980 ID=Msa1365490-mRNA-1:exon:14588;Parent=Msa1365490-mRNA-1
tig0018295 exon 17160 17434 17160 ID=Msa1365490-mRNA-1:exon:14589;Parent=Msa1365490-mRNA-1
tig0018295 exon 18460 19783 18460 ID=Msa1365490-mRNA-1:exon:14590;Parent=Msa1365490-mRNA-1
tig0018295 CDS 14422 14890 14422 ID=Msa1365490-mRNA-1:cds;Parent=Msa1365490-mRNA-1
tig0018295 CDS 14980 15084 14980 ID=Msa1365490-mRNA-1:cds;Parent=Msa1365490-mRNA-1
tig0018295 CDS 17160 17434 17160 ID=Msa1365490-mRNA-1:cds;Parent=Msa1365490-mRNA-1
tig0018295 CDS 18460 19263 18460 ID=Msa1365490-mRNA-1:cds;Parent=Msa1365490-mRNA-1
tig0018295 three_prime_UTR 19264 19783 19264 ID=Msa1365490-mRNA-1:three_prime_utr;Parent=Msa1365490-mRNA-1
Gene Sequence

>Msa1365490

ATGTCTTACCATCCAAGACCACTTTCTTGGATTGTTGTTTTAGTAGGAGCACTTGCAATTTTCTTAATCTATGCTTCATTTGTTCTTGTTTCATCGCCGATTGGTGCCACGTTTCATGGATATTTTTACGGTATAGGTAGTTCTGAGAAGTTAGATGTATCTGGATCTCCTATAAATGTTGCTTCTATTGATAATAAACCGTCTTTAGATTCACAATCTTCCACTGGTACTAGTGATAGCAATATAGAAAAAACCGATACCACTTCAAACTCGGAAGTAGACAATAGTAAGTCTAGTTCTGTGGAACTTCCAACGAGCGAGGATGTCAATAAAACTTCTGATGTGAAACTTCCACCAAAACCCACGACTTCGTTTGGCAATAGTGTAGATACGGCCAATACTAGTTTGCCTGCTCAAGCAAATTCACAAGTTGATTCAACTTCAAGTGCAACTGTTTCGGTTGAAGCAGCACCAAAGGAAACCTCCACGACTTCTGATAATTCCACATTAACAGCTGTTCCAGAATCAGTAAAGAAGCCTGACAACGCATCCAATGCCGGTTCAGTTAATTCAGGCTGTGATCTGTACCATGGGAATTGGGTACATGATCCATTGGGACCACTTTACACAAACAATACATGTCCTGTATTGACACAGATGCAGAATTGCCAGGGTAATGGGAGGCCTGACAAAGATTATGAGAATTGGCGATGGAAGCCCTTTCAGTGTGACATCCCACGATTTGATCCTAGAAAATTTTTGGAGCTGATGAGAGGGAAGACCTTGGCTTTCATTGGAGATTCAGTAGCTCGAAACCAAATGGAATCAATGTTGTGTATTCTGTGGCAGGTAGAGGTACCAAAGAATCGGGGAAATCGTAATATGCAAAGATATTATTTTAGGTCCGCATCTGTAATGATAGTCCGGATATGGTCCTCATGGCTTGTCAAAGTGACGTCTGAACCATTTGATTATGCTCCAGCTGGTGTGGATAAGCTCCATCTTGATGCCCCTGACCCGAAGTTAATGGAACATATCCCAAATTTTGACGTGGTTGTCCTTTCTTCCGGTCATTGGTTTGCTAAGCAGTCTGTGTATATCTTGAATAACGAGATAGTGGGAGGACAGTTATGGTGGCCAGACAAGTCCAAGCAGATGAAGGTCAACAACATTCAAGCATATGCTATATCTGTAGAAACAATTCTTACTGCTCTTGCTACACATCCAACTTACAAAGGTCTCGCAATTGTTCGGTCCTATTCACCAGATCATTATGAGGGTGGAGCCTGGAACACCGGTGGGTCATGCACTGGGAAGGTTAAGCCTGTTGCACTTGGTGAACTGGTAGAAAACGGGCACACAAATACGATGCATGAGCAACAGGTTACAGGTTTTAACCGCGCCATGGAAAAGGCTACAAATAAATCGAAGTTGACGTTAATGGACATTACTCAAGCGTTTCAATACCGACATGATGGTCATCCTGGGCCTTACAGGAGCCCTGACCCAAATAAGATCACTAAACGTGGCCCAGATGGAAGGCCACCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCTGTCGATACCTGGAATGAACTTGTCTTGGAAATCATCAAGAGAGAATATGAAGGTGGAAGTGCATCATGA
Protein sequence

>Msa1365490

MSYHPRPLSWIVVLVGALAIFLIYASFVLVSSPIGATFHGYFYGIGSSEKLDVSGSPINVASIDNKPSLDSQSSTGTSDSNIEKTDTTSNSEVDNSKSSSVELPTSEDVNKTSDVKLPPKPTTSFGNSVDTANTSLPAQANSQVDSTSSATVSVEAAPKETSTTSDNSTLTAVPESVKKPDNASNAGSVNSGCDLYHGNWVHDPLGPLYTNNTCPVLTQMQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMLCILWQVEVPKNRGNRNMQRYYFRSASVMIVRIWSSWLVKVTSEPFDYAPAGVDKLHLDAPDPKLMEHIPNFDVVVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSKQMKVNNIQAYAISVETILTALATHPTYKGLAIVRSYSPDHYEGGAWNTGGSCTGKVKPVALGELVENGHTNTMHEQQVTGFNRAMEKATNKSKLTLMDITQAFQYRHDGHPGPYRSPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIKREYEGGSAS*