AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078140 MtrunA17_Chr1g0188191 93.448 580 10 1 1 552 12 591 0.0 1114
Msa0078140 MtrunA17_Chr6g0476041 61.861 548 167 6 6 552 18 524 0.0 699
Msa0078140 MtrunA17_Chr6g0456691 34.949 392 225 10 170 545 45 422 1.20e-78 254
Msa0078140 MtrunA17_Chr8g0387921 36.158 354 212 8 195 542 74 419 2.28e-77 250
Msa0078140 MtrunA17_Chr8g0347321 34.815 405 244 11 149 542 44 439 2.14e-74 243
Msa0078140 MtrunA17_Chr6g0456681 34.626 361 211 7 194 543 63 409 6.05e-71 233
Msa0078140 MtrunA17_Chr6g0451321 35.196 358 212 9 195 545 116 460 6.57e-71 234
Msa0078140 MtrunA17_Chr7g0226991 37.466 363 207 10 191 544 53 404 1.76e-70 231
Msa0078140 MtrunA17_Chr5g0414061 36.538 364 200 10 195 544 94 440 1.98e-70 233
Msa0078140 MtrunA17_Chr2g0283851 35.135 370 207 10 191 544 50 402 1.45e-67 224
Msa0078140 MtrunA17_Chr3g0140371 35.180 361 217 9 190 544 13 362 5.21e-67 221
Msa0078140 MtrunA17_Chr5g0414051 34.167 360 215 10 195 544 75 422 1.80e-65 219
Msa0078140 MtrunA17_Chr8g0391481 36.338 355 212 10 195 543 27 373 2.41e-65 217
Msa0078140 MtrunA17_Chr5g0414091 34.160 363 212 11 195 544 85 433 3.10e-65 219
Msa0078140 MtrunA17_Chr5g0414041 35.734 361 209 10 195 544 87 435 1.01e-60 207
Msa0078140 MtrunA17_Chr7g0258851 29.002 531 292 21 59 547 106 593 2.12e-53 191
Msa0078140 MtrunA17_Chr7g0259711 33.607 366 207 10 195 545 91 435 3.04e-53 187
Msa0078140 MtrunA17_Chr1g0175671 31.025 361 207 12 195 538 170 505 8.22e-53 187
Msa0078140 MtrunA17_Chr8g0384421 29.663 445 249 16 129 542 61 472 9.32e-52 184
Msa0078140 MtrunA17_Chr4g0071391 28.792 389 241 9 162 538 78 442 1.84e-50 180
Msa0078140 MtrunA17_Chr7g0269991 31.163 430 228 16 136 539 77 464 3.01e-50 179
Msa0078140 MtrunA17_Chr5g0413271 31.016 374 219 11 173 538 130 472 4.17e-50 179
Msa0078140 MtrunA17_Chr4g0070341 28.879 464 260 17 117 542 40 471 9.98e-49 175
Msa0078140 MtrunA17_Chr8g0368461 30.653 398 217 14 170 538 157 524 1.47e-48 176
Msa0078140 MtrunA17_Chr5g0430371 31.034 377 224 11 177 538 40 395 6.43e-48 171
Msa0078140 MtrunA17_Chr2g0287901 32.514 366 206 9 194 542 96 437 8.25e-48 172
Msa0078140 MtrunA17_Chr1g0213281 30.263 380 210 12 191 544 171 521 2.17e-47 173
Msa0078140 MtrunA17_Chr8g0360521 28.989 376 226 13 191 550 67 417 2.31e-46 167
Msa0078140 MtrunA17_Chr4g0068111 28.462 390 244 10 167 542 85 453 1.30e-45 167
Msa0078140 MtrunA17_Chr3g0097891 29.670 364 210 12 184 538 20 346 3.24e-41 152
Msa0078140 MtrunA17_Chr1g0210771 30.447 358 197 14 195 538 59 378 6.89e-41 152
Msa0078140 MtrunA17_Chr5g0437601 29.124 388 240 16 167 539 54 421 2.82e-40 151
Msa0078140 MtrunA17_Chr1g0171171 30.366 382 224 13 168 542 29 375 4.45e-40 149
Msa0078140 MtrunA17_Chr3g0114101 28.205 390 254 13 160 539 54 427 8.44e-40 150
Msa0078140 MtrunA17_Chr3g0113671 30.833 360 213 14 195 538 106 445 7.87e-39 147
Msa0078140 MtrunA17_Chr4g0005491 28.184 369 225 12 193 542 60 407 2.77e-38 145
Msa0078140 MtrunA17_Chr4g0005481 27.778 378 226 15 184 542 97 446 2.88e-38 146
Msa0078140 MtrunA17_Chr7g0243301 28.232 379 244 13 177 542 46 409 1.02e-37 144
Msa0078140 MtrunA17_Chr3g0085071 29.891 368 188 13 195 542 46 363 1.88e-37 142
Msa0078140 MtrunA17_Chr2g0314801 29.600 375 205 17 184 542 22 353 2.08e-37 141
Msa0078140 MtrunA17_Chr3g0126021 29.032 372 213 14 194 548 128 465 2.29e-37 144
Msa0078140 MtrunA17_Chr3g0105301 28.056 360 213 11 195 538 43 372 2.34e-37 142
Msa0078140 MtrunA17_Chr8g0384151 26.525 377 232 11 183 547 78 421 7.32e-37 142
Msa0078140 MtrunA17_Chr3g0091031 28.689 366 187 13 195 538 31 344 2.14e-36 139
Msa0078140 MtrunA17_Chr7g0221271 42.446 139 77 1 183 318 67 205 5.42e-36 133
Msa0078140 MtrunA17_Chr7g0221281 30.120 249 161 5 299 545 2 239 1.51e-35 134
Msa0078140 MtrunA17_Chr2g0283581 30.471 361 194 16 191 538 38 354 1.56e-35 136
Msa0078140 MtrunA17_Chr2g0325481 30.000 350 202 12 195 538 50 362 1.60e-35 136
Msa0078140 MtrunA17_Chr5g0413851 27.083 384 236 12 162 538 9 355 2.09e-35 136
Msa0078140 MtrunA17_Chr3g0085081 28.689 366 187 13 195 538 31 344 4.27e-35 135
Msa0078140 MtrunA17_Chr4g0041011 29.577 355 197 14 195 538 47 359 4.86e-35 135
Msa0078140 MtrunA17_Chr7g0221291 50.476 105 52 0 183 287 67 171 2.58e-34 127
Msa0078140 MtrunA17_Chr5g0437291 27.869 366 219 13 195 538 165 507 6.16e-34 135
Msa0078140 MtrunA17_Chr4g0006991 26.923 364 228 14 195 542 86 427 7.35e-34 133
Msa0078140 MtrunA17_Chr4g0045941 28.371 356 207 12 192 538 30 346 1.07e-33 131
Msa0078140 MtrunA17_Chr7g0242701 25.895 363 233 12 195 542 86 427 1.77e-33 132
Msa0078140 MtrunA17_Chr4g0049421 27.198 364 230 12 195 542 48 392 3.41e-32 128
Msa0078140 MtrunA17_Chr2g0314791 29.086 361 201 14 190 538 24 341 2.46e-31 124
Msa0078140 MtrunA17_Chr4g0045951 28.857 350 207 12 195 538 45 358 5.15e-30 121
Msa0078140 MtrunA17_Chr1g0209921 38.286 175 92 6 195 362 44 209 2.46e-29 117
Msa0078140 MtrunA17_Chr6g0455901 24.934 377 235 12 187 540 63 414 6.51e-29 119
Msa0078140 MtrunA17_Chr5g0414081 33.333 210 115 10 348 545 6 202 3.08e-26 106
Msa0078140 MtrunA17_Chr1g0178081 45.161 93 47 2 194 283 54 145 4.95e-18 85.9
Msa0078140 MtrunA17_Chr1g0178081 32.000 125 67 4 430 552 243 351 8.60e-12 67.0
Msa0078140 MtrunA17_Chr2g0287911 43.548 62 28 1 189 250 55 109 2.21e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078140 AT4G25360.1 57.971 552 189 8 5 550 18 532 0.0 648
Msa0078140 AT4G25360.2 57.971 552 189 8 5 550 18 532 0.0 648
Msa0078140 AT5G51640.1 73.995 373 94 2 183 552 126 498 0.0 617
Msa0078140 AT5G15900.1 38.107 391 218 11 169 549 40 416 5.99e-82 263
Msa0078140 AT5G15900.2 38.107 391 218 11 169 549 59 435 8.46e-82 263
Msa0078140 AT1G01430.1 36.855 407 239 11 148 542 47 447 1.09e-81 263
Msa0078140 AT5G15890.1 37.640 356 196 8 195 543 187 523 3.11e-78 256
Msa0078140 AT4G11090.1 38.168 393 225 12 159 542 42 425 5.19e-78 252
Msa0078140 AT4G23790.1 37.360 356 208 8 195 542 79 427 6.47e-77 249
Msa0078140 AT1G70230.1 38.462 364 181 11 195 544 79 413 8.28e-76 246
Msa0078140 AT4G01080.1 38.315 368 209 9 186 547 81 436 7.22e-75 244
Msa0078140 AT3G02440.2 33.803 355 217 7 195 543 135 477 1.32e-73 243
Msa0078140 AT3G02440.1 33.803 355 217 7 195 543 127 469 1.52e-73 242
Msa0078140 AT3G28150.1 32.410 361 223 8 191 544 66 412 5.42e-66 220
Msa0078140 AT5G49340.1 31.169 385 214 9 176 538 82 437 3.23e-52 185
Msa0078140 AT5G20590.1 32.964 361 201 11 194 538 140 475 4.77e-52 185
Msa0078140 AT1G60790.1 30.282 426 255 13 133 538 125 528 6.86e-52 186
Msa0078140 AT5G06700.1 29.834 362 210 10 195 538 255 590 2.58e-49 180
Msa0078140 AT3G06080.2 30.481 374 213 10 193 545 101 448 3.93e-48 174
Msa0078140 AT3G12060.1 29.369 412 248 11 149 549 165 544 7.60e-48 175
Msa0078140 AT1G73140.1 30.831 373 227 11 185 546 57 409 1.06e-47 171
Msa0078140 AT5G20680.6 30.166 421 228 15 152 542 73 457 1.45e-47 172
Msa0078140 AT5G19160.1 30.667 375 225 11 193 551 97 452 2.47e-47 172
Msa0078140 AT5G20680.4 30.166 421 228 15 152 542 167 551 5.87e-47 172
Msa0078140 AT5G20680.1 30.166 421 228 15 152 542 167 551 5.87e-47 172
Msa0078140 AT5G20680.3 30.166 421 228 15 152 542 167 551 5.87e-47 172
Msa0078140 AT5G20680.5 30.166 421 228 15 152 542 167 551 5.87e-47 172
Msa0078140 AT5G20680.2 30.166 421 228 15 152 542 149 533 5.88e-47 172
Msa0078140 AT3G62390.1 29.805 359 208 9 195 538 138 467 1.15e-46 170
Msa0078140 AT5G64020.1 30.890 382 200 17 195 542 57 408 1.66e-46 168
Msa0078140 AT5G06230.2 29.333 375 221 12 184 538 10 360 4.85e-43 158
Msa0078140 AT5G06230.1 29.333 375 221 12 184 538 51 401 1.76e-42 157
Msa0078140 AT2G40160.2 28.431 408 245 15 161 545 44 427 6.90e-42 156
Msa0078140 AT2G30010.1 30.628 382 215 13 179 538 39 392 2.06e-41 154
Msa0078140 AT2G40160.1 28.501 407 244 15 161 544 44 426 2.27e-41 154
Msa0078140 AT2G30010.2 30.628 382 215 13 179 538 82 435 2.89e-41 154
Msa0078140 AT3G14850.2 29.888 358 198 13 194 538 33 350 9.37e-41 151
Msa0078140 AT3G11570.1 30.409 342 200 12 211 538 98 415 4.61e-40 151
Msa0078140 AT5G64470.3 28.184 369 215 14 195 542 55 394 6.44e-40 150
Msa0078140 AT2G40320.1 28.871 381 232 16 176 539 61 419 7.25e-40 150
Msa0078140 AT2G30900.1 28.680 394 233 13 157 538 4 361 7.46e-40 149
Msa0078140 AT3G54260.1 30.556 360 202 12 195 542 51 374 5.02e-39 147
Msa0078140 AT5G64470.2 28.108 370 220 14 195 542 55 400 6.72e-39 147
Msa0078140 AT3G11030.1 27.123 365 241 12 185 539 96 445 7.29e-39 148
Msa0078140 AT2G31110.2 30.110 362 209 14 185 538 33 358 1.01e-37 143
Msa0078140 AT1G29050.1 28.358 402 238 13 151 542 17 378 3.57e-37 142
Msa0078140 AT1G48880.1 28.609 381 209 14 184 545 106 442 4.10e-37 143
Msa0078140 AT2G14530.1 27.461 386 227 15 181 542 50 406 1.14e-36 141
Msa0078140 AT5G01620.2 29.058 382 219 17 183 542 98 449 1.91e-36 141
Msa0078140 AT5G01620.1 29.058 382 219 17 183 542 98 449 1.91e-36 141
Msa0078140 AT5G01620.3 29.058 382 219 17 183 542 106 457 2.66e-36 141
Msa0078140 AT2G37720.1 27.224 371 210 13 195 539 143 479 4.06e-36 141
Msa0078140 AT2G34070.1 28.099 363 206 14 193 542 63 383 1.96e-35 137
Msa0078140 AT2G40150.1 27.957 372 229 12 195 545 71 424 1.50e-34 135
Msa0078140 AT2G38320.1 28.040 403 231 18 167 542 34 404 1.61e-34 135
Msa0078140 AT5G01360.2 26.776 366 221 12 195 539 36 375 5.70e-34 133
Msa0078140 AT5G01360.1 26.776 366 221 12 195 539 92 431 1.32e-33 133
Msa0078140 AT2G42570.1 26.913 379 235 11 170 542 22 364 1.39e-33 131
Msa0078140 AT5G58600.1 28.108 370 215 12 192 542 63 400 2.08e-33 132
Msa0078140 AT1G78710.1 28.184 369 209 16 184 538 26 352 6.11e-32 127
Msa0078140 AT3G55990.1 27.586 377 216 15 195 544 140 486 3.03e-30 124
Msa0078140 AT3G62390.2 54.639 97 43 1 195 290 138 234 1.15e-29 121
Msa0078140 AT5G20590.2 33.333 249 142 7 194 428 140 378 1.96e-29 120
Msa0078140 AT5G19160.2 29.675 246 155 6 193 427 97 335 1.67e-28 117
Msa0078140 AT2G38320.2 27.907 344 193 16 225 542 7 321 3.91e-27 112
Msa0078140 AT3G06080.1 29.644 253 148 7 193 428 101 340 5.38e-27 112
Msa0078140 AT2G40160.3 29.680 219 146 5 161 373 44 260 1.06e-26 110
Msa0078140 AT5G64470.1 29.057 265 152 10 195 438 55 304 9.54e-26 108
Msa0078140 AT5G64470.4 29.057 265 152 10 195 438 55 304 1.15e-25 108
Msa0078140 AT2G30900.2 31.776 214 128 8 157 362 4 207 3.13e-25 105
Msa0078140 AT2G31110.3 35.106 188 107 6 185 366 33 211 3.32e-25 105
Msa0078140 AT5G06230.3 28.464 267 161 9 184 430 51 307 2.14e-22 98.6
Msa0078140 AT1G78710.2 41.441 111 56 3 180 283 10 118 2.28e-21 95.1
Msa0078140 AT5G58600.2 44.086 93 51 1 192 283 63 155 4.95e-21 94.0
Msa0078140 AT3G14850.1 26.224 286 158 13 266 538 2 247 7.93e-15 75.1
Msa0078140 AT2G34070.2 24.825 286 160 14 266 538 2 245 3.15e-12 67.4

Find 180 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGTTTAGTGATCTTATT+TGG 0.114557 1_2:+55439593 None:intergenic
TCAGGCTTCTTTACTGATTC+TGG 0.163701 1_2:+55443642 None:intergenic
AGGACAACCACGTCAAAATT+TGG 0.190228 1_2:+55440061 None:intergenic
AGATAGGATGTGTGTAATTA+AGG 0.199851 1_2:-55439312 Msa0078140:three_prime_UTR
TCAATAGAAGCAACATTTAT+AGG 0.210296 1_2:+55444082 None:intergenic
TAAATCGAAGTTGACGTTAA+TGG 0.229432 1_2:-55439678 Msa0078140:CDS
ATGGTCATCCTGGGCCTTAC+AGG 0.251182 1_2:-55439625 Msa0078140:CDS
ACCATCCAAGACCACTTTCT+TGG 0.251239 1_2:-55444243 Msa0078140:CDS
CCGATTGGTGCCACGTTTCA+TGG 0.257508 1_2:-55444154 Msa0078140:CDS
CCAAACGAAGTCGTGGGTTT+TGG 0.277729 1_2:+55443896 None:intergenic
TGTGGCGGTGGCCTTCCATC+TGG 0.278954 1_2:+55439569 None:intergenic
TGCCCCTGACCCGAAGTTAA+TGG 0.289127 1_2:-55440092 Msa0078140:CDS
GTGCAATCTCCCAACAAATA+TGG 0.293582 1_2:+55439367 None:intergenic
TTACGATTTCCCCGATTCTT+TGG 0.311708 1_2:+55440241 None:intergenic
GCATGACCCACCGGTGTTCC+AGG 0.323014 1_2:+55439814 None:intergenic
GACGTGGTTGTCCTTTCTTC+CGG 0.330743 1_2:-55440052 Msa0078140:CDS
ATGCATGAGCAACAGGTTAC+AGG 0.340638 1_2:-55439731 Msa0078140:CDS
GGGAAGACCTTGGCTTTCAT+TGG 0.343839 1_2:-55441311 Msa0078140:CDS
AACTTCAAGTGCAACTGTTT+CGG 0.351632 1_2:-55443813 Msa0078140:CDS
TTAGTGATCTTATTTGGGTC+AGG 0.357250 1_2:+55439599 None:intergenic
CACGTTTAGTGATCTTATTT+GGG 0.366019 1_2:+55439594 None:intergenic
GGGAAGTTCAAGGTCTTATA+CGG 0.367511 1_2:-55439291 Msa0078140:three_prime_UTR
GTTTACTTTACATGATAGAT+AGG 0.368569 1_2:-55439328 Msa0078140:three_prime_UTR
GGAGATTGCACTCACACCTT+TGG 0.369253 1_2:-55439355 Msa0078140:three_prime_UTR
TACACAACATTGATTCCATT+TGG 0.372534 1_2:+55441270 None:intergenic
GCCTGTTGCACTTGGTGAAC+TGG 0.373204 1_2:-55439777 Msa0078140:CDS
TTGTCCTTTCTTCCGGTCAT+TGG 0.374487 1_2:-55440045 Msa0078140:CDS
TCTGAGAAGTTAGATGTATC+TGG 0.378480 1_2:-55444109 Msa0078140:CDS
GTGATCTGTACCATGGGAAT+TGG 0.379220 1_2:-55441508 Msa0078140:CDS
TGCAGAATTGCCAGGGTAAT+GGG 0.379873 1_2:-55441427 Msa0078140:CDS
CCAAAACCCACGACTTCGTT+TGG 0.382102 1_2:-55443896 Msa0078140:CDS
TGCTTGCACTGGTGCATGCC+AGG 0.387421 1_2:-55439542 Msa0078140:CDS
TTCATCTGCTTGGACTTGTC+TGG 0.388587 1_2:+55439962 None:intergenic
GGACAACCACGTCAAAATTT+GGG 0.391976 1_2:+55440062 None:intergenic
TTCCAAGACAAGTTCATTCC+AGG 0.392884 1_2:+55439508 None:intergenic
TGCAATCTCCCAACAAATAT+GGG 0.394210 1_2:+55439368 None:intergenic
ACCAGTTCACCAAGTGCAAC+AGG 0.396065 1_2:+55439776 None:intergenic
GGATATGTTCCATTAACTTC+GGG 0.398865 1_2:+55440083 None:intergenic
TGTTCCATTAACTTCGGGTC+AGG 0.405587 1_2:+55440088 None:intergenic
CTGTAATGATAGTCCGGATA+TGG 0.407364 1_2:-55440189 Msa0078140:CDS
TACCGACATGATGGTCATCC+TGG 0.409265 1_2:-55439635 Msa0078140:CDS
GTTGTTGACCTTCATCTGCT+TGG 0.410264 1_2:+55439952 None:intergenic
GATAGGATGTGTGTAATTAA+GGG 0.411396 1_2:-55439311 Msa0078140:three_prime_UTR
AGATGGAAGGCCACCGCCAC+AGG 0.412614 1_2:-55439567 Msa0078140:CDS
TTTGGGTCAGGGCTCCTGTA+AGG 0.416109 1_2:+55439611 None:intergenic
CCGGCATTGGATGCGTTGTC+AGG 0.417008 1_2:+55443624 None:intergenic
CTGACAAAGATTATGAGAAT+TGG 0.417959 1_2:-55441400 Msa0078140:CDS
ATGCAGAATTGCCAGGGTAA+TGG 0.425214 1_2:-55441428 Msa0078140:CDS
CTCATAATGATCTGGTGAAT+AGG 0.425680 1_2:+55439844 None:intergenic
ATGTGTTCATGAGCAATTCC+AGG 0.427783 1_2:-55439002 Msa0078140:three_prime_UTR
ACAATCCAAGAAAGTGGTCT+TGG 0.428546 1_2:+55444238 None:intergenic
AATGCCGGTTCAGTTAATTC+AGG 0.433625 1_2:-55443609 Msa0078140:intron
AAATACGATGCATGAGCAAC+AGG 0.433872 1_2:-55439738 Msa0078140:CDS
GTGGCGGTGGCCTTCCATCT+GGG 0.434365 1_2:+55439570 None:intergenic
TATCTTGAATAACGAGATAG+TGG 0.435893 1_2:-55440002 Msa0078140:CDS
GAAGTCGTGGAGGTTTCCTT+TGG 0.438635 1_2:+55443690 None:intergenic
AACACCGGTGGGTCATGCAC+TGG 0.441439 1_2:-55439809 Msa0078140:CDS
ACTTGTGAATTTGCTTGAGC+AGG 0.443123 1_2:+55443842 None:intergenic
CAATTCTCATAATCTTTGTC+AGG 0.443282 1_2:+55441401 None:intergenic
TTCTGCATCTGTGTCAATAC+AGG 0.448339 1_2:+55441443 None:intergenic
TGAATTAACTGAACCGGCAT+TGG 0.450829 1_2:+55443611 None:intergenic
CACAATCACAATCACATACT+TGG 0.450945 1_2:+55438960 None:intergenic
AGGTAGAGGTACCAAAGAAT+CGG 0.451259 1_2:-55440252 Msa0078140:CDS
ATCATTATGAGGGTGGAGCC+TGG 0.451662 1_2:-55439832 Msa0078140:CDS
CTTGGTGAACTGGTAGAAAA+CGG 0.458499 1_2:-55439767 Msa0078140:CDS
GGTAGAGGTACCAAAGAATC+GGG 0.459715 1_2:-55440251 Msa0078140:CDS
TACCTGGAATGAACTTGTCT+TGG 0.460482 1_2:-55439510 Msa0078140:CDS
ATTGCGAGACCTTTGTAAGT+TGG 0.460750 1_2:+55439875 None:intergenic
TTCAGTAGCTCGAAACCAAA+TGG 0.465522 1_2:-55441285 Msa0078140:CDS
GGGATATGTTCCATTAACTT+CGG 0.466003 1_2:+55440082 None:intergenic
CCATGAAACGTGGCACCAAT+CGG 0.466696 1_2:+55444154 None:intergenic
TGCCAGGTCCTGTCGATACC+TGG 0.468729 1_2:-55439526 Msa0078140:CDS
TCAGGGCTCCTGTAAGGCCC+AGG 0.476391 1_2:+55439617 None:intergenic
TGATCTGTACCATGGGAATT+GGG 0.480897 1_2:-55441507 Msa0078140:CDS
GTAACCTGAATTAACTGAAC+CGG 0.483044 1_2:+55443605 None:intergenic
TTCCGAGTTTGAAGTGGTAT+CGG 0.483511 1_2:+55443997 None:intergenic
ACAAAGGTCTCGCAATTGTT+CGG 0.487631 1_2:-55439868 Msa0078140:CDS
TTGAGCAGGCAAACTAGTAT+TGG 0.488542 1_2:+55443856 None:intergenic
GAGGGTGGAGCCTGGAACAC+CGG 0.488669 1_2:-55439824 Msa0078140:CDS
GCAACTGTTTCGGTTGAAGC+AGG 0.488742 1_2:-55443803 Msa0078140:CDS
CAAACCAATGACCGGAAGAA+AGG 0.492984 1_2:+55440041 None:intergenic
GACACAGATGCAGAATTGCC+AGG 0.493240 1_2:-55441435 Msa0078140:CDS
TGCAAGCAATCCTGTGGCGG+TGG 0.493660 1_2:+55439557 None:intergenic
TTGGTGAACTGGTAGAAAAC+GGG 0.495173 1_2:-55439766 Msa0078140:CDS
GGTGGAGCCTGGAACACCGG+TGG 0.496840 1_2:-55439821 Msa0078140:CDS
GCTCCACCCTCATAATGATC+TGG 0.502988 1_2:+55439836 None:intergenic
TCGTGGGATGTCACACTGAA+AGG 0.503362 1_2:+55441367 None:intergenic
TAGTGATCTTATTTGGGTCA+GGG 0.503772 1_2:+55439600 None:intergenic
GTTCTTGTTTCATCGCCGAT+TGG 0.503785 1_2:-55444169 Msa0078140:CDS
GAATTGGGTACATGATCCAT+TGG 0.511270 1_2:-55441492 Msa0078140:CDS
ATCACTAAACGTGGCCCAGA+TGG 0.514346 1_2:-55439584 Msa0078140:CDS
GTTCCATTAACTTCGGGTCA+GGG 0.514562 1_2:+55440089 None:intergenic
CGCCACAGGATTGCTTGCAC+TGG 0.514703 1_2:-55439553 Msa0078140:CDS
TTAAGAAAAGCATACTATAG+AGG 0.515342 1_2:-55439243 Msa0078140:three_prime_UTR
GTTTCGGTTGAAGCAGGTGC+CGG 0.515679 1_2:-55443797 Msa0078140:intron
CAAGCCATGAGGACCATATC+CGG 0.516438 1_2:+55440176 None:intergenic
CCGCATCTGTAATGATAGTC+CGG 0.516536 1_2:-55440195 Msa0078140:CDS
AGAAACAAAATAAAATAAAG+AGG 0.517667 1_2:+55439206 None:intergenic
CGTGGGATGTCACACTGAAA+GGG 0.519480 1_2:+55441368 None:intergenic
CTATTCACCAGATCATTATG+AGG 0.520724 1_2:-55439843 Msa0078140:CDS
TGGAGCTTATCCACACCAGC+TGG 0.522748 1_2:+55440121 None:intergenic
AAAACAACAATCCAAGAAAG+TGG 0.527041 1_2:+55444232 None:intergenic
AGATAGTGGGAGGACAGTTA+TGG 0.528309 1_2:-55439988 Msa0078140:CDS
TTAGATTCACAATCTTCCAC+TGG 0.528340 1_2:-55444046 Msa0078140:CDS
CCAGCTGGAGCATAATCAAA+TGG 0.539143 1_2:+55440136 None:intergenic
CATGTATTGTTTGTGTAAAG+TGG 0.539629 1_2:+55441467 None:intergenic
GAAAAGCATACTATAGAGGT+GGG 0.539693 1_2:-55439239 Msa0078140:three_prime_UTR
AATGTTGTGTATTCTGTGGC+AGG 0.542105 1_2:-55441258 Msa0078140:intron
GTTTGGCAATAGTGTAGATA+CGG 0.543709 1_2:-55443879 Msa0078140:CDS
TCGGGTCAGGGGCATCAAGA+TGG 0.543725 1_2:+55440101 None:intergenic
AGGTCTTATACGGTATATAG+AGG 0.543847 1_2:-55439281 Msa0078140:three_prime_UTR
TTCCAGGTATCGACAGGACC+TGG 0.544847 1_2:+55439524 None:intergenic
TTCCATTAACTTCGGGTCAG+GGG 0.544917 1_2:+55440090 None:intergenic
ACACCGGTGGGTCATGCACT+GGG 0.546027 1_2:-55439808 Msa0078140:CDS
CCTGACAACGCATCCAATGC+CGG 0.546333 1_2:-55443624 Msa0078140:CDS
AACCGATACCACTTCAAACT+CGG 0.546807 1_2:-55443999 Msa0078140:CDS
GTCTACTTCCGAGTTTGAAG+TGG 0.548097 1_2:+55443991 None:intergenic
CTTCCCAGTGCATGACCCAC+CGG 0.549025 1_2:+55439805 None:intergenic
CCATTTGATTATGCTCCAGC+TGG 0.552386 1_2:-55440136 Msa0078140:CDS
GCGTTTCAATACCGACATGA+TGG 0.557601 1_2:-55439644 Msa0078140:CDS
GCTGATGAGAGGGAAGACCT+TGG 0.564264 1_2:-55441321 Msa0078140:CDS
TCCAAGAAAGTGGTCTTGGA+TGG 0.565929 1_2:+55444242 None:intergenic
AATTGGGTACATGATCCATT+GGG 0.567737 1_2:-55441491 Msa0078140:CDS
AGACAAGTCCAAGCAGATGA+AGG 0.568935 1_2:-55439960 Msa0078140:CDS
TGTCAGGCCTCCCATTACCC+TGG 0.571687 1_2:+55441417 None:intergenic
ACCGACATGATGGTCATCCT+GGG 0.580029 1_2:-55439634 Msa0078140:CDS
AGTTCATTCCAGGTATCGAC+AGG 0.581656 1_2:+55439518 None:intergenic
GTGGAGCCTGGAACACCGGT+GGG 0.582467 1_2:-55439820 Msa0078140:CDS
ACTATTGCCAAACGAAGTCG+TGG 0.582517 1_2:+55443889 None:intergenic
GAAGATTGTGAATCTAAAGA+CGG 0.584346 1_2:+55444052 None:intergenic
GTGTAATTAAGGGAAGTTCA+AGG 0.585044 1_2:-55439301 Msa0078140:three_prime_UTR
AAGATTATGAGAATTGGCGA+TGG 0.585427 1_2:-55441394 Msa0078140:CDS
AAGGTTAAGCCTGTTGCACT+TGG 0.585969 1_2:-55439785 Msa0078140:CDS
CTAAACGTGGCCCAGATGGA+AGG 0.586407 1_2:-55439580 Msa0078140:CDS
AAAGCATACTATAGAGGTGG+GGG 0.587983 1_2:-55439237 Msa0078140:three_prime_UTR
TGAATCTCCAATGAAAGCCA+AGG 0.588688 1_2:+55441304 None:intergenic
AGAAAAGCATACTATAGAGG+TGG 0.589915 1_2:-55439240 Msa0078140:three_prime_UTR
TGTGTAGACTTTATAGAGAG+AGG 0.592377 1_2:-55439135 Msa0078140:three_prime_UTR
TTCTGGAACAGCTGTTAATG+TGG 0.596453 1_2:+55443659 None:intergenic
TGTGGAATTATCAGAAGTCG+TGG 0.596523 1_2:+55443677 None:intergenic
CTGCTTAGCAAACCAATGAC+CGG 0.598348 1_2:+55440033 None:intergenic
TGATTATGCTCCAGCTGGTG+TGG 0.603990 1_2:-55440131 Msa0078140:CDS
TGTAAAGTAAACAGAACCAA+AGG 0.604456 1_2:+55439339 None:intergenic
TGGTGTGATTATAGCACCAA+AGG 0.606346 1_2:-55443706 Msa0078140:intron
TAGTCCGGATATGGTCCTCA+TGG 0.607259 1_2:-55440180 Msa0078140:CDS
CACCAGTGCAAGCAATCCTG+TGG 0.608621 1_2:+55439551 None:intergenic
TTATTGACATCCTCGCTCGT+TGG 0.611402 1_2:+55443941 None:intergenic
ATCTCCCAACAAATATGGGG+GGG 0.611580 1_2:+55439372 None:intergenic
CGGTGGGTCATGCACTGGGA+AGG 0.611769 1_2:-55439804 Msa0078140:CDS
GCAATCTCCCAACAAATATG+GGG 0.613060 1_2:+55439369 None:intergenic
CAATAGTAAGTCTAGTTCTG+TGG 0.616322 1_2:-55443969 Msa0078140:CDS
CAGTGCAAGCAATCCTGTGG+CGG 0.618270 1_2:+55439554 None:intergenic
TTTGTGTAAAGTGGTCCCAA+TGG 0.618822 1_2:+55441476 None:intergenic
TAGTGGGAGGACAGTTATGG+TGG 0.622969 1_2:-55439985 Msa0078140:CDS
ATCATCAAGAGAGAATATGA+AGG 0.626533 1_2:-55439485 Msa0078140:CDS
TCACCAGATCATTATGAGGG+TGG 0.628408 1_2:-55439839 Msa0078140:CDS
ATTGCTATCACTAGTACCAG+TGG 0.629797 1_2:+55444030 None:intergenic
TAGGCTGTGATCTGTACCAT+GGG 0.633271 1_2:-55441514 Msa0078140:CDS
GCTACACATCCAACTTACAA+AGG 0.636013 1_2:-55439884 Msa0078140:CDS
ACACAGATGCAGAATTGCCA+GGG 0.636339 1_2:-55441434 Msa0078140:CDS
ATCAAGAGAGAATATGAAGG+TGG 0.637532 1_2:-55439482 Msa0078140:CDS
AAAAGCATACTATAGAGGTG+GGG 0.637961 1_2:-55439238 Msa0078140:three_prime_UTR
CAATCTCCCAACAAATATGG+GGG 0.638171 1_2:+55439370 None:intergenic
ATTTAATCATATCTCATGAG+AGG 0.645423 1_2:+55439433 None:intergenic
ATCTTGAATAACGAGATAGT+GGG 0.646579 1_2:-55440001 Msa0078140:CDS
TATTCACCAGATCATTATGA+GGG 0.649367 1_2:-55439842 Msa0078140:CDS
TGTGGAACTTCCAACGAGCG+AGG 0.651120 1_2:-55443951 Msa0078140:CDS
TTGAATAACGAGATAGTGGG+AGG 0.661822 1_2:-55439998 Msa0078140:CDS
CCGGACTATCATTACAGATG+CGG 0.665544 1_2:+55440195 None:intergenic
CCAAATAAGATCACTAAACG+TGG 0.667609 1_2:-55439593 Msa0078140:CDS
GATCATGTACCCAATTCCCA+TGG 0.672337 1_2:+55441498 None:intergenic
AATCTCCCAACAAATATGGG+GGG 0.678037 1_2:+55439371 None:intergenic
GCCCAGGATGACCATCATGT+CGG 0.678895 1_2:+55439633 None:intergenic
GTAGGCTGTGATCTGTACCA+TGG 0.685036 1_2:-55441515 Msa0078140:intron
CTATTGCCAAACGAAGTCGT+GGG 0.691219 1_2:+55443890 None:intergenic
GGAATTATCAGAAGTCGTGG+AGG 0.703782 1_2:+55443680 None:intergenic
AATCAATGTTGTGTATTCTG+TGG 0.709727 1_2:-55441262 Msa0078140:CDS
AGAATTGCCAGGGTAATGGG+AGG 0.713659 1_2:-55441424 Msa0078140:CDS
CGTCACTTTGACAAGCCATG+AGG 0.722152 1_2:+55440165 None:intergenic
GTAGAGGTACCAAAGAATCG+GGG 0.738063 1_2:-55440250 Msa0078140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTATTTATTTTTA+AGG - chr1_2:55444145-55444164 Msa0078140:CDS 0.0%
!! AAAAATTAAAAAGAGAATAT+GGG + chr1_2:55439994-55440013 None:intergenic 10.0%
!! TAAAAATTAAAAAGAGAATA+TGG + chr1_2:55439995-55440014 None:intergenic 10.0%
!!! TTTCTTTTTATTAACATTTA+TGG + chr1_2:55442358-55442377 None:intergenic 10.0%
!! TTAGATAAAATAGTAATGTT+GGG + chr1_2:55440063-55440082 None:intergenic 15.0%
!! AAAAATTTCTTATTGTAAAC+AGG - chr1_2:55441588-55441607 Msa0078140:intron 15.0%
!! ATAAAATGATTTAGAGATTA+TGG - chr1_2:55442008-55442027 Msa0078140:intron 15.0%
!! AACAAATATAAAATACAAAC+AGG + chr1_2:55442251-55442270 None:intergenic 15.0%
!!! GTTTGTATTTTATATTTGTT+TGG - chr1_2:55442251-55442270 Msa0078140:intron 15.0%
!!! TATTTTATATTTGTTTGGTT+TGG - chr1_2:55442256-55442275 Msa0078140:intron 15.0%
!! CTCTTATTATTATTGTATTA+TGG - chr1_2:55442302-55442321 Msa0078140:intron 15.0%
!! TTATTATTATTAGGTAAAAG+AGG - chr1_2:55442423-55442442 Msa0078140:intron 15.0%
!! CATATAAACATTTCTTTATT+AGG - chr1_2:55442554-55442573 Msa0078140:intron 15.0%
!!! ATATGCAAAGATATTATTTT+AGG - chr1_2:55442980-55442999 Msa0078140:intron 15.0%
!! AGAAACAAAATAAAATAAAG+AGG + chr1_2:55443996-55444015 None:intergenic 15.0%
!!! ATTTATTTATTTTTAAGGAC+TGG - chr1_2:55444150-55444169 Msa0078140:CDS 15.0%
!!! TTTATTTATTTTTAAGGACT+GGG - chr1_2:55444151-55444170 Msa0078140:CDS 15.0%
!! TAGATAAAATAGTAATGTTG+GGG + chr1_2:55440062-55440081 None:intergenic 20.0%
!! GTTAGATAAAATAGTAATGT+TGG + chr1_2:55440064-55440083 None:intergenic 20.0%
!!! ACTTAATAAACTAGTCTTTT+GGG + chr1_2:55440749-55440768 None:intergenic 20.0%
!!! AAAAGACTAGTTTATTAAGT+GGG - chr1_2:55440749-55440768 Msa0078140:intron 20.0%
!!! TGATGTATAATTCAAAGTTT+TGG - chr1_2:55441410-55441429 Msa0078140:CDS 20.0%
!!! ATTTGATCCTAGAAAATTTT+TGG - chr1_2:55441854-55441873 Msa0078140:intron 20.0%
!! ATTTCTTTATTAGGTAAAAG+AGG - chr1_2:55442563-55442582 Msa0078140:intron 20.0%
!!! CTTTTTATTGGAATATACTT+TGG + chr1_2:55442681-55442700 None:intergenic 20.0%
!!! ACATGCATTTTTCTTTTTAT+TGG + chr1_2:55442693-55442712 None:intergenic 20.0%
!! TATTCATTTACACATACATA+GGG - chr1_2:55442832-55442851 Msa0078140:intron 20.0%
!! AAAATGACATTTAAAAAACC+TGG + chr1_2:55444218-55444237 None:intergenic 20.0%
!!! ACGTTTCATGGATATTTTTA+CGG - chr1_2:55439057-55439076 Msa0078140:three_prime_UTR 25.0%
! TCAATAGAAGCAACATTTAT+AGG + chr1_2:55439120-55439139 None:intergenic 25.0%
! TTTAAAAAACAAGCTAGTGT+AGG + chr1_2:55439635-55439654 None:intergenic 25.0%
!!! CTTGTTTTTTAAATGCTTCA+TGG - chr1_2:55439642-55439661 Msa0078140:CDS 25.0%
! ATAGTAGTACAAAACAAGAA+TGG + chr1_2:55439679-55439698 None:intergenic 25.0%
! AAAGAGATATCCTTTACAAA+GGG + chr1_2:55439924-55439943 None:intergenic 25.0%
! AAAAGAGATATCCTTTACAA+AGG + chr1_2:55439925-55439944 None:intergenic 25.0%
! TTAAAAAGAGAATATGGGAA+TGG + chr1_2:55439989-55440008 None:intergenic 25.0%
!!! GAGTAACCTCTATTTTATTT+TGG - chr1_2:55440367-55440386 Msa0078140:intron 25.0%
! CAAAGACCAAAATAAAATAG+AGG + chr1_2:55440376-55440395 None:intergenic 25.0%
!! TCTTTGTTTCAGTTATCAAT+TGG - chr1_2:55440390-55440409 Msa0078140:intron 25.0%
!! CTTTGTTTCAGTTATCAATT+GGG - chr1_2:55440391-55440410 Msa0078140:intron 25.0%
!!! CACTTTTATCTAGTTTATGT+GGG - chr1_2:55440513-55440532 Msa0078140:intron 25.0%
! ATTTAGTTGAGTACCTTAAT+CGG - chr1_2:55440651-55440670 Msa0078140:intron 25.0%
!!! CACTTAATAAACTAGTCTTT+TGG + chr1_2:55440750-55440769 None:intergenic 25.0%
!!! CAAAAGACTAGTTTATTAAG+TGG - chr1_2:55440748-55440767 Msa0078140:intron 25.0%
! CAAAATTCCAGTAGATAAAA+GGG + chr1_2:55440805-55440824 None:intergenic 25.0%
! TTAATTAGCAACTGAATCAA+CGG - chr1_2:55441045-55441064 Msa0078140:intron 25.0%
!!! TAATTTTGCTTTTGTACTTC+TGG - chr1_2:55441071-55441090 Msa0078140:intron 25.0%
!!! AATTTTGCTTTTGTACTTCT+GGG - chr1_2:55441072-55441091 Msa0078140:intron 25.0%
!!! GTATAATTCAAAGTTTTGGT+TGG - chr1_2:55441414-55441433 Msa0078140:CDS 25.0%
! ATTATGAACTCTCTAACAAT+AGG - chr1_2:55442079-55442098 Msa0078140:intron 25.0%
! TTATGAACTCTCTAACAATA+GGG - chr1_2:55442080-55442099 Msa0078140:intron 25.0%
! AAGTAAATGAGAATGAAATC+AGG - chr1_2:55442476-55442495 Msa0078140:intron 25.0%
!! CAACATTTCTTTTCTTAGTT+TGG - chr1_2:55442630-55442649 Msa0078140:intron 25.0%
!!! GCATCAAAAATTGTTTTATG+TGG - chr1_2:55442729-55442748 Msa0078140:intron 25.0%
! AAAACCATTTCATTATGAAC+CGG + chr1_2:55442780-55442799 None:intergenic 25.0%
! GTATTCATTTACACATACAT+AGG - chr1_2:55442831-55442850 Msa0078140:intron 25.0%
! TAGAAGCTTAACTGAAAATA+TGG - chr1_2:55442917-55442936 Msa0078140:intron 25.0%
!! ACTGAAAATATGGTATTTTC+AGG - chr1_2:55442927-55442946 Msa0078140:intron 25.0%
! ATTTAATCATATCTCATGAG+AGG + chr1_2:55443769-55443788 None:intergenic 25.0%
! TGGTCATTTGAAAAATAGAA+GGG + chr1_2:55443803-55443822 None:intergenic 25.0%
! GTTTACTTTACATGATAGAT+AGG - chr1_2:55443871-55443890 Msa0078140:CDS 25.0%
!! TTAAGAAAAGCATACTATAG+AGG - chr1_2:55443956-55443975 Msa0078140:CDS 25.0%
! TTATAGAGAGAGGTAAAAAT+AGG - chr1_2:55444074-55444093 Msa0078140:CDS 25.0%
AAAACAACAATCCAAGAAAG+TGG + chr1_2:55438970-55438989 None:intergenic 30.0%
!!! TCTTGGATTGTTGTTTTAGT+AGG - chr1_2:55438973-55438992 Msa0078140:three_prime_UTR 30.0%
GTAAAAATATCCATGAAACG+TGG + chr1_2:55439058-55439077 None:intergenic 30.0%
!! CATGGATATTTTTACGGTAT+AGG - chr1_2:55439063-55439082 Msa0078140:three_prime_UTR 30.0%
GAAGATTGTGAATCTAAAGA+CGG + chr1_2:55439150-55439169 None:intergenic 30.0%
! TTCTTTACTTCACTCTCTTT+TGG - chr1_2:55439728-55439747 Msa0078140:CDS 30.0%
TGTATTATTGCAAACTGAAC+TGG - chr1_2:55439865-55439884 Msa0078140:CDS 30.0%
TTTACAAAGGGAAAACTCTT+GGG + chr1_2:55439912-55439931 None:intergenic 30.0%
! GTCAATTTGATAGTTGTACA+TGG + chr1_2:55439954-55439973 None:intergenic 30.0%
TCTAACTTCAAACTGTGATT+AGG - chr1_2:55440078-55440097 Msa0078140:CDS 30.0%
!!! ATGAGTGTTTTTTTGTTAGG+TGG + chr1_2:55440110-55440129 None:intergenic 30.0%
!!! GCTATGAGTGTTTTTTTGTT+AGG + chr1_2:55440113-55440132 None:intergenic 30.0%
TGTATTACATGAAAAGTCTG+AGG - chr1_2:55440148-55440167 Msa0078140:CDS 30.0%
GTATTACATGAAAAGTCTGA+GGG - chr1_2:55440149-55440168 Msa0078140:CDS 30.0%
! TTGTCTATATTTTTCTCCGA+GGG - chr1_2:55440289-55440308 Msa0078140:intron 30.0%
GTACTAAAAACAAGCTAAAG+TGG + chr1_2:55440340-55440359 None:intergenic 30.0%
TATCAATTGGGCTAATTAAG+TGG - chr1_2:55440403-55440422 Msa0078140:intron 30.0%
!! GCACTTTTATCTAGTTTATG+TGG - chr1_2:55440512-55440531 Msa0078140:intron 30.0%
CAATGACAGCATCATTTATT+AGG - chr1_2:55440698-55440717 Msa0078140:intron 30.0%
!!! AATAAACTAGTCTTTTGGGT+TGG + chr1_2:55440745-55440764 None:intergenic 30.0%
CCAAAATTCCAGTAGATAAA+AGG + chr1_2:55440806-55440825 None:intergenic 30.0%
! CCTTTTATCTACTGGAATTT+TGG - chr1_2:55440803-55440822 Msa0078140:intron 30.0%
! CTTGTGTTGCTATATATGTT+TGG - chr1_2:55441518-55441537 Msa0078140:intron 30.0%
TTCTTATTGTAAACAGGTGA+CGG - chr1_2:55441594-55441613 Msa0078140:intron 30.0%
CATGTATTGTTTGTGTAAAG+TGG + chr1_2:55441735-55441754 None:intergenic 30.0%
CAATTCTCATAATCTTTGTC+AGG + chr1_2:55441801-55441820 None:intergenic 30.0%
CTGACAAAGATTATGAGAAT+TGG - chr1_2:55441799-55441818 Msa0078140:intron 30.0%
!!! ATTTTCTAGGATCAAATCGT+GGG + chr1_2:55441851-55441870 None:intergenic 30.0%
!!! AATTTTCTAGGATCAAATCG+TGG + chr1_2:55441852-55441871 None:intergenic 30.0%
! ATCAGCTCCAAAAATTTTCT+AGG + chr1_2:55441864-55441883 None:intergenic 30.0%
!! TACACAACATTGATTCCATT+TGG + chr1_2:55441932-55441951 None:intergenic 30.0%
AATCAATGTTGTGTATTCTG+TGG - chr1_2:55441937-55441956 Msa0078140:intron 30.0%
TTTCATTCTCATTTACTTCC+TGG + chr1_2:55442474-55442493 None:intergenic 30.0%
AAATGCAGAAATTGTTGTAC+TGG + chr1_2:55442520-55442539 None:intergenic 30.0%
GGAACGTAATCAAATTGATT+TGG - chr1_2:55442584-55442603 Msa0078140:intron 30.0%
TATTGGAATATACTTTGGCT+GGG + chr1_2:55442676-55442695 None:intergenic 30.0%
TTATTGGAATATACTTTGGC+TGG + chr1_2:55442677-55442696 None:intergenic 30.0%
AAACCATTTCATTATGAACC+GGG + chr1_2:55442779-55442798 None:intergenic 30.0%
! AGCTTCTAGCTATGATAAAA+TGG + chr1_2:55442905-55442924 None:intergenic 30.0%
!!! AATATGGTATTTTCAGGTAG+AGG - chr1_2:55442933-55442952 Msa0078140:intron 30.0%
TATCTTGAATAACGAGATAG+TGG - chr1_2:55443197-55443216 Msa0078140:intron 30.0%
ATCTTGAATAACGAGATAGT+GGG - chr1_2:55443198-55443217 Msa0078140:intron 30.0%
TATTCACCAGATCATTATGA+GGG - chr1_2:55443357-55443376 Msa0078140:intron 30.0%
! TTTATTTGTAGCCTTTTCCA+TGG + chr1_2:55443505-55443524 None:intergenic 30.0%
TAAATCGAAGTTGACGTTAA+TGG - chr1_2:55443521-55443540 Msa0078140:intron 30.0%
! CACGTTTAGTGATCTTATTT+GGG + chr1_2:55443608-55443627 None:intergenic 30.0%
ATCATCAAGAGAGAATATGA+AGG - chr1_2:55443714-55443733 Msa0078140:intron 30.0%
GTGGTCATTTGAAAAATAGA+AGG + chr1_2:55443804-55443823 None:intergenic 30.0%
TGTAAAGTAAACAGAACCAA+AGG + chr1_2:55443863-55443882 None:intergenic 30.0%
AGATAGGATGTGTGTAATTA+AGG - chr1_2:55443887-55443906 Msa0078140:CDS 30.0%
GATAGGATGTGTGTAATTAA+GGG - chr1_2:55443888-55443907 Msa0078140:CDS 30.0%
!!! TTTATTTTTAAGGACTGGGA+TGG - chr1_2:55444155-55444174 Msa0078140:CDS 30.0%
TCTGAGAAGTTAGATGTATC+TGG - chr1_2:55439090-55439109 Msa0078140:three_prime_UTR 35.0%
TTAGATTCACAATCTTCCAC+TGG - chr1_2:55439153-55439172 Msa0078140:three_prime_UTR 35.0%
!! CAATAGTAAGTCTAGTTCTG+TGG - chr1_2:55439230-55439249 Msa0078140:three_prime_UTR 35.0%
GTTTGGCAATAGTGTAGATA+CGG - chr1_2:55439320-55439339 Msa0078140:three_prime_UTR 35.0%
AACTTCAAGTGCAACTGTTT+CGG - chr1_2:55439386-55439405 Msa0078140:three_prime_UTR 35.0%
GTAACCTGAATTAACTGAAC+CGG + chr1_2:55439597-55439616 None:intergenic 35.0%
CTGTTCATTTCAGTTTCTCT+AGG + chr1_2:55439816-55439835 None:intergenic 35.0%
CTTTACAAAGGGAAAACTCT+TGG + chr1_2:55439913-55439932 None:intergenic 35.0%
! CAAGAGTTTTCCCTTTGTAA+AGG - chr1_2:55439911-55439930 Msa0078140:CDS 35.0%
AAGAGAATATGGGAATGGAA+AGG + chr1_2:55439984-55440003 None:intergenic 35.0%
TTCATGCATTTGAAGGATTC+AGG - chr1_2:55440214-55440233 Msa0078140:CDS 35.0%
! GTTGTCTATATTTTTCTCCG+AGG - chr1_2:55440288-55440307 Msa0078140:intron 35.0%
CTAAAAACAAGCTAAAGTGG+TGG + chr1_2:55440337-55440356 None:intergenic 35.0%
GTACTCAACTAAATACCGAT+TGG + chr1_2:55440645-55440664 None:intergenic 35.0%
TATTAGGACTTATGTCCATG+AGG - chr1_2:55440714-55440733 Msa0078140:intron 35.0%
!! GGAATTTTGGTGTGTTTGTT+TGG - chr1_2:55440816-55440835 Msa0078140:intron 35.0%
!! TTTTGGTGTGTTTGTTTGGT+AGG - chr1_2:55440820-55440839 Msa0078140:intron 35.0%
! TTTGGTGTGTTTGTTTGGTA+GGG - chr1_2:55440821-55440840 Msa0078140:intron 35.0%
! GGTATTGTCATGATGATGTT+TGG - chr1_2:55440975-55440994 Msa0078140:intron 35.0%
GTTGAATTCACAGTAGTTTC+AGG - chr1_2:55441363-55441382 Msa0078140:CDS 35.0%
! GTTTGAAATTACTCTGTGTG+AGG - chr1_2:55441632-55441651 Msa0078140:intron 35.0%
TATTGTCCATTCTGTTGTGT+AGG - chr1_2:55441666-55441685 Msa0078140:intron 35.0%
AATTGGGTACATGATCCATT+GGG - chr1_2:55441708-55441727 Msa0078140:intron 35.0%
AAGATTATGAGAATTGGCGA+TGG - chr1_2:55441805-55441824 Msa0078140:intron 35.0%
!!! AAATTTTTGGAGCTGATGAG+AGG - chr1_2:55441867-55441886 Msa0078140:intron 35.0%
!!! AATTTTTGGAGCTGATGAGA+GGG - chr1_2:55441868-55441887 Msa0078140:intron 35.0%
CCATGCAAAACAGATCAATA+AGG + chr1_2:55441985-55442004 None:intergenic 35.0%
! CCTTATTGATCTGTTTTGCA+TGG - chr1_2:55441982-55442001 Msa0078140:intron 35.0%
GGTGATTTATTAGGTAAACC+AGG - chr1_2:55442453-55442472 Msa0078140:intron 35.0%
! AAAATGCATGTTTTGCCTCT+TGG - chr1_2:55442702-55442721 Msa0078140:intron 35.0%
ATTTCATTATGAACCGGGTA+TGG + chr1_2:55442774-55442793 None:intergenic 35.0%
ATACCCGGTTCATAATGAAA+TGG - chr1_2:55442773-55442792 Msa0078140:intron 35.0%
ATCAAATGCATGCTGTTGAA+CGG + chr1_2:55442806-55442825 None:intergenic 35.0%
GGATATGTTCCATTAACTTC+GGG + chr1_2:55443119-55443138 None:intergenic 35.0%
GGGATATGTTCCATTAACTT+CGG + chr1_2:55443120-55443139 None:intergenic 35.0%
!! ACATATCCCAAATTTTGACG+TGG - chr1_2:55443131-55443150 Msa0078140:intron 35.0%
CTCATAATGATCTGGTGAAT+AGG + chr1_2:55443358-55443377 None:intergenic 35.0%
CTATTCACCAGATCATTATG+AGG - chr1_2:55443356-55443375 Msa0078140:intron 35.0%
! TAGTGATCTTATTTGGGTCA+GGG + chr1_2:55443602-55443621 None:intergenic 35.0%
! TTAGTGATCTTATTTGGGTC+AGG + chr1_2:55443603-55443622 None:intergenic 35.0%
CCACGTTTAGTGATCTTATT+TGG + chr1_2:55443609-55443628 None:intergenic 35.0%
CCAAATAAGATCACTAAACG+TGG - chr1_2:55443606-55443625 Msa0078140:intron 35.0%
ATCAAGAGAGAATATGAAGG+TGG - chr1_2:55443717-55443736 Msa0078140:intron 35.0%
TGCAATCTCCCAACAAATAT+GGG + chr1_2:55443834-55443853 None:intergenic 35.0%
GTGTAATTAAGGGAAGTTCA+AGG - chr1_2:55443898-55443917 Msa0078140:CDS 35.0%
! AGGTCTTATACGGTATATAG+AGG - chr1_2:55443918-55443937 Msa0078140:CDS 35.0%
! AGAAAAGCATACTATAGAGG+TGG - chr1_2:55443959-55443978 Msa0078140:CDS 35.0%
! GAAAAGCATACTATAGAGGT+GGG - chr1_2:55443960-55443979 Msa0078140:CDS 35.0%
! AAAAGCATACTATAGAGGTG+GGG - chr1_2:55443961-55443980 Msa0078140:CDS 35.0%
TGTGTAGACTTTATAGAGAG+AGG - chr1_2:55444064-55444083 Msa0078140:CDS 35.0%
AGAGAGGTAAAAATAGGTCT+CGG - chr1_2:55444080-55444099 Msa0078140:CDS 35.0%
CACAATCACAATCACATACT+TGG + chr1_2:55444242-55444261 None:intergenic 35.0%
ACAATCCAAGAAAGTGGTCT+TGG + chr1_2:55438964-55438983 None:intergenic 40.0%
ATTGCTATCACTAGTACCAG+TGG + chr1_2:55439172-55439191 None:intergenic 40.0%
AACCGATACCACTTCAAACT+CGG - chr1_2:55439200-55439219 Msa0078140:three_prime_UTR 40.0%
! TTCCGAGTTTGAAGTGGTAT+CGG + chr1_2:55439205-55439224 None:intergenic 40.0%
TTGAGCAGGCAAACTAGTAT+TGG + chr1_2:55439346-55439365 None:intergenic 40.0%
! ACTTGTGAATTTGCTTGAGC+AGG + chr1_2:55439360-55439379 None:intergenic 40.0%
TCTAATACCACCCGTCAAAT+TGG + chr1_2:55439433-55439452 None:intergenic 40.0%
! GTCATTTGAAACCGTAGAAG+GGG + chr1_2:55439465-55439484 None:intergenic 40.0%
! GGTCATTTGAAACCGTAGAA+GGG + chr1_2:55439466-55439485 None:intergenic 40.0%
! TGGTCATTTGAAACCGTAGA+AGG + chr1_2:55439467-55439486 None:intergenic 40.0%
TGGTGTGATTATAGCACCAA+AGG - chr1_2:55439493-55439512 Msa0078140:CDS 40.0%
TGTGGAATTATCAGAAGTCG+TGG + chr1_2:55439525-55439544 None:intergenic 40.0%
!! TTCTGGAACAGCTGTTAATG+TGG + chr1_2:55439543-55439562 None:intergenic 40.0%
!! TCAGGCTTCTTTACTGATTC+TGG + chr1_2:55439560-55439579 None:intergenic 40.0%
TGAATTAACTGAACCGGCAT+TGG + chr1_2:55439591-55439610 None:intergenic 40.0%
!! AATGCCGGTTCAGTTAATTC+AGG - chr1_2:55439590-55439609 Msa0078140:CDS 40.0%
AGAATATGGGAATGGAAAGG+AGG + chr1_2:55439981-55440000 None:intergenic 40.0%
TTACATGAAAAGTCTGAGGG+AGG - chr1_2:55440152-55440171 Msa0078140:CDS 40.0%
TACATGAAAAGTCTGAGGGA+GGG - chr1_2:55440153-55440172 Msa0078140:CDS 40.0%
ATCCTTCAAATGCATGAAGC+AGG + chr1_2:55440212-55440231 None:intergenic 40.0%
GGAAATCTCATTAAAGCCCT+CGG + chr1_2:55440308-55440327 None:intergenic 40.0%
TTGTTAGACTTAAGCCCATG+AGG - chr1_2:55440426-55440445 Msa0078140:intron 40.0%
!!! ATGGACTGGTCTTTTGAGTT+GGG + chr1_2:55440456-55440475 None:intergenic 40.0%
!!! AATGGACTGGTCTTTTGAGT+TGG + chr1_2:55440457-55440476 None:intergenic 40.0%
ACTCAAAAGACCAGTCCATT+AGG - chr1_2:55440457-55440476 Msa0078140:intron 40.0%
AAAAGACCAGTCCATTAGGT+TGG - chr1_2:55440461-55440480 Msa0078140:intron 40.0%
!! CTAGATAAAAGTGCTCAGTG+TGG + chr1_2:55440506-55440525 None:intergenic 40.0%
AGTGAAACTGACGTAGAAGT+CGG + chr1_2:55440571-55440590 None:intergenic 40.0%
CTACGTCAGTTTCACTCTAT+CGG - chr1_2:55440575-55440594 Msa0078140:intron 40.0%
TGATGCTGTCATTGAGAGTT+GGG + chr1_2:55440692-55440711 None:intergenic 40.0%
ATGATGCTGTCATTGAGAGT+TGG + chr1_2:55440693-55440712 None:intergenic 40.0%
GTGCTTAGCAACAAGAAACA+AGG + chr1_2:55441013-55441032 None:intergenic 40.0%
CAGAAAAAACCCACTTGAGT+TGG - chr1_2:55441149-55441168 Msa0078140:intron 40.0%
! TCACAGTAGTTTCAGGTGTA+TGG - chr1_2:55441370-55441389 Msa0078140:CDS 40.0%
TGTGAGTGCATGTATATGTG+AGG + chr1_2:55441454-55441473 None:intergenic 40.0%
AGTGTGAGTATGTATGTGTG+CGG + chr1_2:55441482-55441501 None:intergenic 40.0%
! CTCTGTGTGAGGCTTTTAAT+TGG - chr1_2:55441643-55441662 Msa0078140:intron 40.0%
TGATCTGTACCATGGGAATT+GGG - chr1_2:55441692-55441711 Msa0078140:intron 40.0%
GAATTGGGTACATGATCCAT+TGG - chr1_2:55441707-55441726 Msa0078140:intron 40.0%
TTTGTGTAAAGTGGTCCCAA+TGG + chr1_2:55441726-55441745 None:intergenic 40.0%
TTCTGCATCTGTGTCAATAC+AGG + chr1_2:55441759-55441778 None:intergenic 40.0%
TGAATCTCCAATGAAAGCCA+AGG + chr1_2:55441898-55441917 None:intergenic 40.0%
TTCAGTAGCTCGAAACCAAA+TGG - chr1_2:55441914-55441933 Msa0078140:intron 40.0%
AATGTTGTGTATTCTGTGGC+AGG - chr1_2:55441941-55441960 Msa0078140:intron 40.0%
TGATTCGATTATGCGTGTCT+CGG + chr1_2:55442169-55442188 None:intergenic 40.0%
GAAACAACTTCTGCAACATG+TGG - chr1_2:55442392-55442411 Msa0078140:intron 40.0%
GAATATACTTTGGCTGGGAA+AGG + chr1_2:55442671-55442690 None:intergenic 40.0%
! ATTTTTGATGCAGTGCCAAG+AGG + chr1_2:55442720-55442739 None:intergenic 40.0%
!! AGGTAGAGGTACCAAAGAAT+CGG - chr1_2:55442947-55442966 Msa0078140:intron 40.0%
TTACGATTTCCCCGATTCTT+TGG + chr1_2:55442961-55442980 None:intergenic 40.0%
CTGTAATGATAGTCCGGATA+TGG - chr1_2:55443010-55443029 Msa0078140:intron 40.0%
GGACAACCACGTCAAAATTT+GGG + chr1_2:55443140-55443159 None:intergenic 40.0%
AGGACAACCACGTCAAAATT+TGG + chr1_2:55443141-55443160 None:intergenic 40.0%
!! TTGAATAACGAGATAGTGGG+AGG - chr1_2:55443201-55443220 Msa0078140:intron 40.0%
GCTACACATCCAACTTACAA+AGG - chr1_2:55443315-55443334 Msa0078140:intron 40.0%
ATTGCGAGACCTTTGTAAGT+TGG + chr1_2:55443327-55443346 None:intergenic 40.0%
ACAAAGGTCTCGCAATTGTT+CGG - chr1_2:55443331-55443350 Msa0078140:intron 40.0%
CTTGGTGAACTGGTAGAAAA+CGG - chr1_2:55443432-55443451 Msa0078140:intron 40.0%
TTGGTGAACTGGTAGAAAAC+GGG - chr1_2:55443433-55443452 Msa0078140:intron 40.0%
AAATACGATGCATGAGCAAC+AGG - chr1_2:55443461-55443480 Msa0078140:intron 40.0%
TACCTGGAATGAACTTGTCT+TGG - chr1_2:55443689-55443708 Msa0078140:CDS 40.0%
TTCCAAGACAAGTTCATTCC+AGG + chr1_2:55443694-55443713 None:intergenic 40.0%
AATCTCCCAACAAATATGGG+GGG + chr1_2:55443831-55443850 None:intergenic 40.0%
CAATCTCCCAACAAATATGG+GGG + chr1_2:55443832-55443851 None:intergenic 40.0%
GCAATCTCCCAACAAATATG+GGG + chr1_2:55443833-55443852 None:intergenic 40.0%
GTGCAATCTCCCAACAAATA+TGG + chr1_2:55443835-55443854 None:intergenic 40.0%
! GGGAAGTTCAAGGTCTTATA+CGG - chr1_2:55443908-55443927 Msa0078140:CDS 40.0%
AAAGCATACTATAGAGGTGG+GGG - chr1_2:55443962-55443981 Msa0078140:CDS 40.0%
ATGTGTTCATGAGCAATTCC+AGG - chr1_2:55444197-55444216 Msa0078140:CDS 40.0%
ACCATCCAAGACCACTTTCT+TGG - chr1_2:55438956-55438975 Msa0078140:three_prime_UTR 45.0%
! TCCAAGAAAGTGGTCTTGGA+TGG + chr1_2:55438960-55438979 None:intergenic 45.0%
! GTTCTTGTTTCATCGCCGAT+TGG - chr1_2:55439030-55439049 Msa0078140:three_prime_UTR 45.0%
GTCTACTTCCGAGTTTGAAG+TGG + chr1_2:55439211-55439230 None:intergenic 45.0%
TTATTGACATCCTCGCTCGT+TGG + chr1_2:55439261-55439280 None:intergenic 45.0%
CTATTGCCAAACGAAGTCGT+GGG + chr1_2:55439312-55439331 None:intergenic 45.0%
ACTATTGCCAAACGAAGTCG+TGG + chr1_2:55439313-55439332 None:intergenic 45.0%
!! TGCCGGTTCTTCCAATTTGA+CGG - chr1_2:55439419-55439438 Msa0078140:three_prime_UTR 45.0%
ACCCGTCAAATTGGAAGAAC+CGG + chr1_2:55439424-55439443 None:intergenic 45.0%
GAACTGAAGAACCCCTTCTA+CGG - chr1_2:55439451-55439470 Msa0078140:exon 45.0%
ACGGTTTCAAATGACCAGTC+CGG - chr1_2:55439470-55439489 Msa0078140:CDS 45.0%
!! TGGTGCTATAATCACACCAC+CGG + chr1_2:55439492-55439511 None:intergenic 45.0%
GGAATTATCAGAAGTCGTGG+AGG + chr1_2:55439522-55439541 None:intergenic 45.0%
GTCCTGCTTCATGCATTTGA+AGG - chr1_2:55440207-55440226 Msa0078140:CDS 45.0%
!! AAGCTAAAGTGGTGGATGCA+AGG + chr1_2:55440329-55440348 None:intergenic 45.0%
!! TTGAGTTGGGCTATCCTCAT+GGG + chr1_2:55440443-55440462 None:intergenic 45.0%
!! TTTGAGTTGGGCTATCCTCA+TGG + chr1_2:55440444-55440463 None:intergenic 45.0%
! TAGAAGTCGGCTCTTAAAGG+GGG + chr1_2:55440558-55440577 None:intergenic 45.0%
! GTAGAAGTCGGCTCTTAAAG+GGG + chr1_2:55440559-55440578 None:intergenic 45.0%
! CGTAGAAGTCGGCTCTTAAA+GGG + chr1_2:55440560-55440579 None:intergenic 45.0%
! ACGTAGAAGTCGGCTCTTAA+AGG + chr1_2:55440561-55440580 None:intergenic 45.0%
! ACAGAAAGGGCTACCGATTA+AGG + chr1_2:55440667-55440686 None:intergenic 45.0%
TGAGAGTTGGGTCACAGAAA+GGG + chr1_2:55440680-55440699 None:intergenic 45.0%
TTGAGAGTTGGGTCACAGAA+AGG + chr1_2:55440681-55440700 None:intergenic 45.0%
! CATAGCTTAAGTACCGCACT+CGG - chr1_2:55440779-55440798 Msa0078140:intron 45.0%
CCAGGACAGAAGTAATGGTT+CGG + chr1_2:55440898-55440917 None:intergenic 45.0%
GACTCTCTAATCACCATGAC+AGG - chr1_2:55440949-55440968 Msa0078140:intron 45.0%
TCTAATCACCATGACAGGAG+TGG - chr1_2:55440954-55440973 Msa0078140:intron 45.0%
TGACAATACCACTCCTGTCA+TGG + chr1_2:55440965-55440984 None:intergenic 45.0%
! TGCTTTTGTACTTCTGGGCA+AGG - chr1_2:55441077-55441096 Msa0078140:intron 45.0%
!! AAAACCCACTTGAGTTGGTC+TGG - chr1_2:55441154-55441173 Msa0078140:intron 45.0%
ATCAAACCTGAGACCTTGAG+AGG + chr1_2:55441210-55441229 None:intergenic 45.0%
GTCTCAGGTTTGATTCTCTC+CGG - chr1_2:55441216-55441235 Msa0078140:intron 45.0%
! ATTCTCTCCGGTGCCAATTT+CGG - chr1_2:55441228-55441247 Msa0078140:intron 45.0%
GTGTGAGTATGTATGTGTGC+GGG + chr1_2:55441481-55441500 None:intergenic 45.0%
CAACACAAGTGTGAGTGTGT+CGG + chr1_2:55441507-55441526 None:intergenic 45.0%
TCACAGCCTACACAACAGAA+TGG + chr1_2:55441675-55441694 None:intergenic 45.0%
TAGGCTGTGATCTGTACCAT+GGG - chr1_2:55441685-55441704 Msa0078140:intron 45.0%
GTGATCTGTACCATGGGAAT+TGG - chr1_2:55441691-55441710 Msa0078140:intron 45.0%
GATCATGTACCCAATTCCCA+TGG + chr1_2:55441704-55441723 None:intergenic 45.0%
ACACAGATGCAGAATTGCCA+GGG - chr1_2:55441765-55441784 Msa0078140:intron 45.0%
ATGCAGAATTGCCAGGGTAA+TGG - chr1_2:55441771-55441790 Msa0078140:intron 45.0%
TGCAGAATTGCCAGGGTAAT+GGG - chr1_2:55441772-55441791 Msa0078140:intron 45.0%
GAACTCTCTAACAATAGGGC+TGG - chr1_2:55442084-55442103 Msa0078140:intron 45.0%
TGCACACACAAGCATGGATA+TGG + chr1_2:55442862-55442881 None:intergenic 45.0%
TATCCATGCTTGTGTGTGCA+TGG - chr1_2:55442862-55442881 Msa0078140:intron 45.0%
!! GGTAGAGGTACCAAAGAATC+GGG - chr1_2:55442948-55442967 Msa0078140:intron 45.0%
!! GTAGAGGTACCAAAGAATCG+GGG - chr1_2:55442949-55442968 Msa0078140:intron 45.0%
CCGGACTATCATTACAGATG+CGG + chr1_2:55443007-55443026 None:intergenic 45.0%
CCGCATCTGTAATGATAGTC+CGG - chr1_2:55443004-55443023 Msa0078140:intron 45.0%
CCAGCTGGAGCATAATCAAA+TGG + chr1_2:55443066-55443085 None:intergenic 45.0%
CCATTTGATTATGCTCCAGC+TGG - chr1_2:55443063-55443082 Msa0078140:intron 45.0%
TTCCATTAACTTCGGGTCAG+GGG + chr1_2:55443112-55443131 None:intergenic 45.0%
GTTCCATTAACTTCGGGTCA+GGG + chr1_2:55443113-55443132 None:intergenic 45.0%
TGTTCCATTAACTTCGGGTC+AGG + chr1_2:55443114-55443133 None:intergenic 45.0%
TTGTCCTTTCTTCCGGTCAT+TGG - chr1_2:55443154-55443173 Msa0078140:intron 45.0%
CAAACCAATGACCGGAAGAA+AGG + chr1_2:55443161-55443180 None:intergenic 45.0%
CTGCTTAGCAAACCAATGAC+CGG + chr1_2:55443169-55443188 None:intergenic 45.0%
!! AGATAGTGGGAGGACAGTTA+TGG - chr1_2:55443211-55443230 Msa0078140:intron 45.0%
TTCATCTGCTTGGACTTGTC+TGG + chr1_2:55443240-55443259 None:intergenic 45.0%
AGACAAGTCCAAGCAGATGA+AGG - chr1_2:55443239-55443258 Msa0078140:intron 45.0%
GTTGTTGACCTTCATCTGCT+TGG + chr1_2:55443250-55443269 None:intergenic 45.0%
TCACCAGATCATTATGAGGG+TGG - chr1_2:55443360-55443379 Msa0078140:intron 45.0%
AAGGTTAAGCCTGTTGCACT+TGG - chr1_2:55443414-55443433 Msa0078140:intron 45.0%
ATGCATGAGCAACAGGTTAC+AGG - chr1_2:55443468-55443487 Msa0078140:intron 45.0%
! TTTTAACCGCGCCATGGAAA+AGG - chr1_2:55443491-55443510 Msa0078140:intron 45.0%
GCGTTTCAATACCGACATGA+TGG - chr1_2:55443555-55443574 Msa0078140:intron 45.0%
!! AGTTCATTCCAGGTATCGAC+AGG + chr1_2:55443684-55443703 None:intergenic 45.0%
AACAAATATGGGGGGGTAAG+TGG + chr1_2:55443823-55443842 None:intergenic 45.0%
ACTTACCCCCCCATATTTGT+TGG - chr1_2:55443822-55443841 Msa0078140:CDS 45.0%
CTTACCCCCCCATATTTGTT+GGG - chr1_2:55443823-55443842 Msa0078140:CDS 45.0%
ATCTCCCAACAAATATGGGG+GGG + chr1_2:55443830-55443849 None:intergenic 45.0%
!!! TTTTTAAAAATTTGAATAAT+TGG + chr1_2:55441343-55441362 None:intergenic 5.0%
!! GATTTATTATTATTATTATT+AGG - chr1_2:55442414-55442433 Msa0078140:intron 5.0%
CCATGAAACGTGGCACCAAT+CGG + chr1_2:55439048-55439067 None:intergenic 50.0%
!! AACGAAGTCGTGGGTTTTGG+TGG + chr1_2:55439303-55439322 None:intergenic 50.0%
! CCAAACGAAGTCGTGGGTTT+TGG + chr1_2:55439306-55439325 None:intergenic 50.0%
CCAAAACCCACGACTTCGTT+TGG - chr1_2:55439303-55439322 Msa0078140:three_prime_UTR 50.0%
GCAACTGTTTCGGTTGAAGC+AGG - chr1_2:55439396-55439415 Msa0078140:three_prime_UTR 50.0%
! GCCGGTTCTTCCAATTTGAC+GGG - chr1_2:55439420-55439439 Msa0078140:three_prime_UTR 50.0%
GGTTCTTCCAATTTGACGGG+TGG - chr1_2:55439423-55439442 Msa0078140:three_prime_UTR 50.0%
GTTTCAAATGACCAGTCCGG+TGG - chr1_2:55439473-55439492 Msa0078140:CDS 50.0%
CTATAATCACACCACCGGAC+TGG + chr1_2:55439487-55439506 None:intergenic 50.0%
GAAGTCGTGGAGGTTTCCTT+TGG + chr1_2:55439512-55439531 None:intergenic 50.0%
CATGAGGCTCTCCAACCTAA+TGG + chr1_2:55440475-55440494 None:intergenic 50.0%
!! CATTAGGTTGGAGAGCCTCA+TGG - chr1_2:55440473-55440492 Msa0078140:intron 50.0%
CAGTGTGGTACTAAGCCATG+AGG + chr1_2:55440491-55440510 None:intergenic 50.0%
! AAGGGGGTGATGGCAATGTT+AGG + chr1_2:55440542-55440561 None:intergenic 50.0%
AAGAGGAAAGGGCTACCGTT+GGG + chr1_2:55440607-55440626 None:intergenic 50.0%
AAAGAGGAAAGGGCTACCGT+TGG + chr1_2:55440608-55440627 None:intergenic 50.0%
AACGGTAGCCCTTTCCTCTT+TGG - chr1_2:55440607-55440626 Msa0078140:intron 50.0%
TGAAGCCGCCAAAGAGGAAA+GGG + chr1_2:55440618-55440637 None:intergenic 50.0%
!! TTTGGGTTGGACTCTCCTCA+TGG + chr1_2:55440732-55440751 None:intergenic 50.0%
GTAGATAAAAGGGCCGAGTG+CGG + chr1_2:55440795-55440814 None:intergenic 50.0%
! CACTCGGCCCTTTTATCTAC+TGG - chr1_2:55440795-55440814 Msa0078140:intron 50.0%
CCGAACCATTACTTCTGTCC+TGG - chr1_2:55440895-55440914 Msa0078140:intron 50.0%
GAAGGCCAGGACAGAAGTAA+TGG + chr1_2:55440903-55440922 None:intergenic 50.0%
! TTACTTCTGTCCTGGCCTTC+TGG - chr1_2:55440903-55440922 Msa0078140:intron 50.0%
! TACTTCTGTCCTGGCCTTCT+GGG - chr1_2:55440904-55440923 Msa0078140:intron 50.0%
CGAGTGCAAACTATCCCAGA+AGG + chr1_2:55440921-55440940 None:intergenic 50.0%
! GGATAGTTTGCACTCGAGTC+TGG - chr1_2:55440925-55440944 Msa0078140:intron 50.0%
ACCACCAGACCAACTCAAGT+GGG + chr1_2:55441161-55441180 None:intergenic 50.0%
!! TTGAGTTGGTCTGGTGGTGT+TGG - chr1_2:55441163-55441182 Msa0078140:intron 50.0%
CCAAACTAGCCCACCGAAAT+TGG + chr1_2:55441244-55441263 None:intergenic 50.0%
!! CCAATTTCGGTGGGCTAGTT+TGG - chr1_2:55441241-55441260 Msa0078140:intron 50.0%
GTAGGCTGTGATCTGTACCA+TGG - chr1_2:55441684-55441703 Msa0078140:intron 50.0%
GACACAGATGCAGAATTGCC+AGG - chr1_2:55441764-55441783 Msa0078140:intron 50.0%
!! AGAATTGCCAGGGTAATGGG+AGG - chr1_2:55441775-55441794 Msa0078140:intron 50.0%
CGTGGGATGTCACACTGAAA+GGG + chr1_2:55441834-55441853 None:intergenic 50.0%
TCGTGGGATGTCACACTGAA+AGG + chr1_2:55441835-55441854 None:intergenic 50.0%
! GGGAAGACCTTGGCTTTCAT+TGG - chr1_2:55441888-55441907 Msa0078140:intron 50.0%
TGCTGCATATGCACCATACC+CGG - chr1_2:55442758-55442777 Msa0078140:intron 50.0%
TAGTCCGGATATGGTCCTCA+TGG - chr1_2:55443019-55443038 Msa0078140:intron 50.0%
CAAGCCATGAGGACCATATC+CGG + chr1_2:55443026-55443045 None:intergenic 50.0%
! CGTCACTTTGACAAGCCATG+AGG + chr1_2:55443037-55443056 None:intergenic 50.0%
TGATTATGCTCCAGCTGGTG+TGG - chr1_2:55443068-55443087 Msa0078140:intron 50.0%
GACGTGGTTGTCCTTTCTTC+CGG - chr1_2:55443147-55443166 Msa0078140:intron 50.0%
TAGTGGGAGGACAGTTATGG+TGG - chr1_2:55443214-55443233 Msa0078140:intron 50.0%
GCTCCACCCTCATAATGATC+TGG + chr1_2:55443366-55443385 None:intergenic 50.0%
ATCATTATGAGGGTGGAGCC+TGG - chr1_2:55443367-55443386 Msa0078140:intron 50.0%
ACCAGTTCACCAAGTGCAAC+AGG + chr1_2:55443426-55443445 None:intergenic 50.0%
!! TACAGGTTTTAACCGCGCCA+TGG - chr1_2:55443485-55443504 Msa0078140:intron 50.0%
! TTGTAGCCTTTTCCATGGCG+CGG + chr1_2:55443500-55443519 None:intergenic 50.0%
TACCGACATGATGGTCATCC+TGG - chr1_2:55443564-55443583 Msa0078140:intron 50.0%
ACCGACATGATGGTCATCCT+GGG - chr1_2:55443565-55443584 Msa0078140:intron 50.0%
ATCACTAAACGTGGCCCAGA+TGG - chr1_2:55443615-55443634 Msa0078140:CDS 50.0%
GGAGATTGCACTCACACCTT+TGG - chr1_2:55443844-55443863 Msa0078140:CDS 50.0%
!! CCGATTGGTGCCACGTTTCA+TGG - chr1_2:55439045-55439064 Msa0078140:three_prime_UTR 55.0%
TGTGGAACTTCCAACGAGCG+AGG - chr1_2:55439248-55439267 Msa0078140:three_prime_UTR 55.0%
GTTTCGGTTGAAGCAGGTGC+CGG - chr1_2:55439402-55439421 Msa0078140:three_prime_UTR 55.0%
CCTGACAACGCATCCAATGC+CGG - chr1_2:55439575-55439594 Msa0078140:CDS 55.0%
! GGCTCTCCAACCTAATGGAC+TGG + chr1_2:55440470-55440489 None:intergenic 55.0%
TCGGCTCTTAAAGGGGGTGA+TGG + chr1_2:55440552-55440571 None:intergenic 55.0%
!! CTCTATCGGCACTGACCCAA+CGG - chr1_2:55440589-55440608 Msa0078140:intron 55.0%
GGTAGCCCTTTCCTCTTTGG+CGG - chr1_2:55440610-55440629 Msa0078140:intron 55.0%
GTGAAGCCGCCAAAGAGGAA+AGG + chr1_2:55440619-55440638 None:intergenic 55.0%
TGGCGGCTTCACTCACCAAT+CGG - chr1_2:55440627-55440646 Msa0078140:intron 55.0%
GCAAACTATCCCAGAAGGCC+AGG + chr1_2:55440916-55440935 None:intergenic 55.0%
!! ACCCACTTGAGTTGGTCTGG+TGG - chr1_2:55441157-55441176 Msa0078140:intron 55.0%
CACCACCAGACCAACTCAAG+TGG + chr1_2:55441162-55441181 None:intergenic 55.0%
!! TTGGTCTGGTGGTGTTGGCT+TGG - chr1_2:55441168-55441187 Msa0078140:intron 55.0%
!! TGGTCTGGTGGTGTTGGCTT+GGG - chr1_2:55441169-55441188 Msa0078140:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr1_2:55441201-55441220 Msa0078140:intron 55.0%
! TCTCCGGTGCCAATTTCGGT+GGG - chr1_2:55441232-55441251 Msa0078140:intron 55.0%
TAGCCCACCGAAATTGGCAC+CGG + chr1_2:55441238-55441257 None:intergenic 55.0%
GCTGATGAGAGGGAAGACCT+TGG - chr1_2:55441878-55441897 Msa0078140:intron 55.0%
GCACCATGCACACACAAGCA+TGG + chr1_2:55442868-55442887 None:intergenic 55.0%
TGGAGCTTATCCACACCAGC+TGG + chr1_2:55443081-55443100 None:intergenic 55.0%
TGCCCCTGACCCGAAGTTAA+TGG - chr1_2:55443107-55443126 Msa0078140:intron 55.0%
! GCCTGTTGCACTTGGTGAAC+TGG - chr1_2:55443422-55443441 Msa0078140:intron 55.0%
GCCCAGGATGACCATCATGT+CGG + chr1_2:55443569-55443588 None:intergenic 55.0%
ATGGTCATCCTGGGCCTTAC+AGG - chr1_2:55443574-55443593 Msa0078140:intron 55.0%
TTTGGGTCAGGGCTCCTGTA+AGG + chr1_2:55443591-55443610 None:intergenic 55.0%
CTAAACGTGGCCCAGATGGA+AGG - chr1_2:55443619-55443638 Msa0078140:CDS 55.0%
CAGTGCAAGCAATCCTGTGG+CGG + chr1_2:55443648-55443667 None:intergenic 55.0%
CACCAGTGCAAGCAATCCTG+TGG + chr1_2:55443651-55443670 None:intergenic 55.0%
!! TTCCAGGTATCGACAGGACC+TGG + chr1_2:55443678-55443697 None:intergenic 55.0%
! CCGGCATTGGATGCGTTGTC+AGG + chr1_2:55439578-55439597 None:intergenic 60.0%
GGTGAGTGAAGCCGCCAAAG+AGG + chr1_2:55440624-55440643 None:intergenic 60.0%
!! GTGGTGTTGGCTTGGGACCT+CGG - chr1_2:55441176-55441195 Msa0078140:intron 60.0%
! CTTGAGAGGAGCACACTCCG+AGG + chr1_2:55441196-55441215 None:intergenic 60.0%
CTCGGAGTGTGCTCCTCTCA+AGG - chr1_2:55441194-55441213 Msa0078140:intron 60.0%
! CTCTCCGGTGCCAATTTCGG+TGG - chr1_2:55441231-55441250 Msa0078140:intron 60.0%
TGTCAGGCCTCCCATTACCC+TGG + chr1_2:55441785-55441804 None:intergenic 60.0%
!! TCGGGTCAGGGGCATCAAGA+TGG + chr1_2:55443101-55443120 None:intergenic 60.0%
AACACCGGTGGGTCATGCAC+TGG - chr1_2:55443390-55443409 Msa0078140:intron 60.0%
ACACCGGTGGGTCATGCACT+GGG - chr1_2:55443391-55443410 Msa0078140:intron 60.0%
CTTCCCAGTGCATGACCCAC+CGG + chr1_2:55443397-55443416 None:intergenic 60.0%
TGCAAGCAATCCTGTGGCGG+TGG + chr1_2:55443645-55443664 None:intergenic 60.0%
CGCCACAGGATTGCTTGCAC+TGG - chr1_2:55443646-55443665 Msa0078140:CDS 60.0%
! TGCTTGCACTGGTGCATGCC+AGG - chr1_2:55443657-55443676 Msa0078140:CDS 60.0%
TGCCAGGTCCTGTCGATACC+TGG - chr1_2:55443673-55443692 Msa0078140:CDS 60.0%
GAGGGTGGAGCCTGGAACAC+CGG - chr1_2:55443375-55443394 Msa0078140:intron 65.0%
GTGGAGCCTGGAACACCGGT+GGG - chr1_2:55443379-55443398 Msa0078140:intron 65.0%
GCATGACCCACCGGTGTTCC+AGG + chr1_2:55443388-55443407 None:intergenic 65.0%
CGGTGGGTCATGCACTGGGA+AGG - chr1_2:55443395-55443414 Msa0078140:intron 65.0%
TCAGGGCTCCTGTAAGGCCC+AGG + chr1_2:55443585-55443604 None:intergenic 65.0%
GTGGCGGTGGCCTTCCATCT+GGG + chr1_2:55443632-55443651 None:intergenic 65.0%
TGTGGCGGTGGCCTTCCATC+TGG + chr1_2:55443633-55443652 None:intergenic 65.0%
AGATGGAAGGCCACCGCCAC+AGG - chr1_2:55443632-55443651 Msa0078140:CDS 65.0%
GGTGGAGCCTGGAACACCGG+TGG - chr1_2:55443378-55443397 Msa0078140:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55438949 55444272 55438949 ID=Msa0078140;Name=Msa0078140
chr1_2 mRNA 55438949 55444272 55438949 ID=Msa0078140-mRNA-1;Parent=Msa0078140;Name=Msa0078140-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.5|1|1|1|4|520|552
chr1_2 exon 55438949 55440272 55438949 ID=Msa0078140-mRNA-1:exon:17271;Parent=Msa0078140-mRNA-1
chr1_2 exon 55441259 55441533 55441259 ID=Msa0078140-mRNA-1:exon:17270;Parent=Msa0078140-mRNA-1
chr1_2 exon 55443610 55443714 55443610 ID=Msa0078140-mRNA-1:exon:17269;Parent=Msa0078140-mRNA-1
chr1_2 exon 55443798 55444272 55443798 ID=Msa0078140-mRNA-1:exon:17268;Parent=Msa0078140-mRNA-1
chr1_2 CDS 55443798 55444272 55443798 ID=Msa0078140-mRNA-1:cds;Parent=Msa0078140-mRNA-1
chr1_2 CDS 55443610 55443714 55443610 ID=Msa0078140-mRNA-1:cds;Parent=Msa0078140-mRNA-1
chr1_2 CDS 55441259 55441533 55441259 ID=Msa0078140-mRNA-1:cds;Parent=Msa0078140-mRNA-1
chr1_2 CDS 55439469 55440272 55439469 ID=Msa0078140-mRNA-1:cds;Parent=Msa0078140-mRNA-1
chr1_2 three_prime_UTR 55438949 55439468 55438949 ID=Msa0078140-mRNA-1:three_prime_utr;Parent=Msa0078140-mRNA-1
Gene Sequence

>Msa0078140

ATGTCTTACCATCCAAGACCACTTTCTTGGATTGTTGTTTTAGTAGGAGCACTTGCAATTTTCTTAATCTATGCTTCATTTGTTCTTGTTTCATCGCCGATTGGTGCCACGTTTCATGGATATTTTTACGGTATAGGTAGTTCTGAGAAGTTAGATGTATCTGGATCTCCTATAAATGTTGCTTCTATTGATAATAAACCGTCTTTAGATTCACAATCTTCCACTGGTACTAGTGATAGCAATATAGAAAAAACCGATACCACTTCAAACTCGGAAGTAGACAATAGTAAGTCTAGTTCTGTGGAACTTCCAACGAGCGAGGATGTCAATAAAACTTCTGATGTGAAACTTCCACCAAAACCCACGACTTCGTTTGGCAATAGTGTAGATACGGCCAATACTAGTTTGCCTGCTCAAGCAAATTCACAAGTTGATTCAACTTCAAGTGCAACTGTTTCGGTTGAAGCAGGTGCCGCACCAAAGGAAACCTCCACGACTTCTGATAATTCCACATTAACAGCTGTTCCAGAATCAGTAAAGAAGCCTGACAACGCATCCAATGCCGGTTCAGTTAATTCAGGCTGTGATCTGTACCATGGGAATTGGGTACATGATCCATTGGGACCACTTTACACAAACAATACATGTCCTGTATTGACACAGATGCAGAATTGCCAGGGTAATGGGAGGCCTGACAAAGATTATGAGAATTGGCGATGGAAGCCCTTTCAGTGTGACATCCCACGATTTGATCCTAGAAAATTTTTGGAGCTGATGAGAGGGAAGACCTTGGCTTTCATTGGAGATTCAGTAGCTCGAAACCAAATGGAATCAATGTTGTGTATTCTGTGGCAGGTAGAGGTACCAAAGAATCGGGGAAATCGTAATATGCAAAGATATTATTTTAGGTCCGCATCTGTAATGATAGTCCGGATATGGTCCTCATGGCTTGTCAAAGTGACGTCTGAACCATTTGATTATGCTCCAGCTGGTGTGGATAAGCTCCATCTTGATGCCCCTGACCCGAAGTTAATGGAACATATCCCAAATTTTGACGTGGTTGTCCTTTCTTCCGGTCATTGGTTTGCTAAGCAGTCTGTGTATATCTTGAATAACGAGATAGTGGGAGGACAGTTATGGTGGCCAGACAAGTCCAAGCAGATGAAGGTCAACAACATTCAAGCATATGCTATATCTGTAGAAACAATTCTTACTGCTCTTGCTACACATCCAACTTACAAAGGTCTCGCAATTGTTCGGTCCTATTCACCAGATCATTATGAGGGTGGAGCCTGGAACACCGGTGGGTCATGCACTGGGAAGGTTAAGCCTGTTGCACTTGGTGAACTGGTAGAAAACGGGCACACAAATACGATGCATGAGCAACAGGTTACAGGTTTTAACCGCGCCATGGAAAAGGCTACAAATAAATCGAAGTTGACGTTAATGGACATTACTCAAGCGTTTCAATACCGACATGATGGTCATCCTGGGCCTTACAGGAGCCCTGACCCAAATAAGATCACTAAACGTGGCCCAGATGGAAGGCCACCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCTGTCGATACCTGGAATGAACTTGTCTTGGAAATCATCAAGAGAGAATATGAAGGTGGAAGTGCATCATGA
Protein sequence

>Msa0078140

MSYHPRPLSWIVVLVGALAIFLIYASFVLVSSPIGATFHGYFYGIGSSEKLDVSGSPINVASIDNKPSLDSQSSTGTSDSNIEKTDTTSNSEVDNSKSSSVELPTSEDVNKTSDVKLPPKPTTSFGNSVDTANTSLPAQANSQVDSTSSATVSVEAGAAPKETSTTSDNSTLTAVPESVKKPDNASNAGSVNSGCDLYHGNWVHDPLGPLYTNNTCPVLTQMQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMLCILWQVEVPKNRGNRNMQRYYFRSASVMIVRIWSSWLVKVTSEPFDYAPAGVDKLHLDAPDPKLMEHIPNFDVVVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSKQMKVNNIQAYAISVETILTALATHPTYKGLAIVRSYSPDHYEGGAWNTGGSCTGKVKPVALGELVENGHTNTMHEQQVTGFNRAMEKATNKSKLTLMDITQAFQYRHDGHPGPYRSPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIKREYEGGSAS*