AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083880 MtrunA17_Chr7g0273521 99.412 170 1 0 1 170 1 170 8.32e-128 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083880 AT3G05000.1 81.765 170 28 2 1 170 1 167 1.45e-101 290

Find 65 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACTTGTGTTTCTTTAC+AGG 0.162850 7_2:+84186814 Msa1083880:three_prime_UTR
TTCATGGAGATTACGATAAT+TGG 0.205655 7_2:+84186679 Msa1083880:CDS
GCCTCTTTCAGATCCATATA+AGG 0.276051 7_2:-84184153 None:intergenic
TACCCTAACACTTCCATATA+AGG 0.288673 7_2:-84184049 None:intergenic
ATTCCTTATATGGAAGTGTT+AGG 0.300051 7_2:+84184046 Msa1083880:five_prime_UTR
GGTAATAGAAATTCCTTATA+TGG 0.320533 7_2:+84184140 Msa1083880:five_prime_UTR
GCCTCGGTTTGGTGATCATT+TGG 0.323253 7_2:+84184779 Msa1083880:CDS
GGTAATAGAAATTCCTTATA+TGG 0.324948 7_2:+84184036 Msa1083880:five_prime_UTR
ATCTAATCCTCCAGACAAAA+AGG 0.325927 7_2:-84186860 None:intergenic
GATCGAAGCCATTGGTTATC+AGG 0.347972 7_2:+84184389 Msa1083880:CDS
ATCCTGCGAGCAGCGAGTTC+AGG 0.362814 7_2:-84184369 None:intergenic
TTCCCATGCGGGATCATTAG+AGG 0.368149 7_2:+84185137 Msa1083880:CDS
AATGTTATATCCCTCTTGTA+TGG 0.381414 7_2:+84186760 Msa1083880:exon
GATATACGATGGAGCGGCCT+CGG 0.415640 7_2:+84184763 Msa1083880:intron
GGTCTGTTGCTCACATACTA+TGG 0.417778 7_2:+84186700 Msa1083880:CDS
TAGAGGAGCTCTTTCCAACT+TGG 0.425869 7_2:+84185154 Msa1083880:CDS
TGCACCTACGGCTGAAAGTA+AGG 0.438829 7_2:+84185085 Msa1083880:CDS
GGCAATTAAGTTCATTTGCA+AGG 0.458740 7_2:+84184803 Msa1083880:CDS
ATTAGATTAAATTTATATGT+CGG 0.462112 7_2:+84186876 Msa1083880:three_prime_UTR
AGCAGCGAGTTCAGGTTTGT+TGG 0.468848 7_2:-84184361 None:intergenic
GGCTGAAAGTAAGGCAGCAC+AGG 0.488115 7_2:+84185094 Msa1083880:CDS
TTCCTTATATGGAAGTGTTA+GGG 0.493178 7_2:+84184047 Msa1083880:five_prime_UTR
ACGATGGAGCGGCCTCGGTT+TGG 0.496970 7_2:+84184768 Msa1083880:CDS
ATAAATTTCCGTGGCTTGCA+CGG 0.497008 7_2:+84185012 Msa1083880:CDS
AGAGGAGCTCTTTCCAACTT+GGG 0.498177 7_2:+84185155 Msa1083880:CDS
TGCATCTTTATTTCCCATGC+GGG 0.509752 7_2:+84185126 Msa1083880:CDS
TCCGTGGCTTGCACGGATGT+CGG 0.520572 7_2:+84185019 Msa1083880:CDS
TCGGTTTGGTGATCATTTGG+AGG 0.520959 7_2:+84184782 Msa1083880:CDS
ACAACTTGAAAACTAACCAT+AGG 0.528003 7_2:+84184859 Msa1083880:CDS
AACCTGAACTCGCTGCTCGC+AGG 0.543806 7_2:+84184367 Msa1083880:CDS
CAACTTGAAAACTAACCATA+GGG 0.547452 7_2:+84184860 Msa1083880:CDS
TCCTTATATGGATCTGAAAG+AGG 0.547585 7_2:+84184152 Msa1083880:five_prime_UTR
GGTCTTGACAAAAGAAAGGA+AGG 0.548531 7_2:+84184097 Msa1083880:five_prime_UTR
TGATAATGTTAGTTCAGTTG+AGG 0.553497 7_2:+84185055 Msa1083880:CDS
TGCACAGGGAATTCCCAAGT+TGG 0.556321 7_2:-84185168 None:intergenic
TGAGGATTATTCTGCACCTA+CGG 0.558019 7_2:+84185073 Msa1083880:CDS
GCTGCCTTACTTTCAGCCGT+AGG 0.558260 7_2:-84185089 None:intergenic
ACCGACATCCGTGCAAGCCA+CGG 0.566327 7_2:-84185020 None:intergenic
TATGTCTGCAGAAACTGCAC+AGG 0.568585 7_2:-84185183 None:intergenic
TTCAGAGAGTGAAAATGGTG+AGG 0.569906 7_2:+84184268 Msa1083880:exon
GAACTAACATTATCAGTGGA+TGG 0.571137 7_2:-84185047 None:intergenic
TATGGATCTGAAAGAGGCAA+AGG 0.571684 7_2:+84184158 Msa1083880:five_prime_UTR
TTGCGTTGATAGCTTGATGA+CGG 0.587460 7_2:+84184305 Msa1083880:CDS
GCTCCTCTAATGATCCCGCA+TGG 0.591236 7_2:-84185140 None:intergenic
GTGCACTGTTGAAAGACAAT+GGG 0.593198 7_2:+84186722 Msa1083880:CDS
CTCCTCTAATGATCCCGCAT+GGG 0.596153 7_2:-84185139 None:intergenic
TAGCATTCGTTCCATACAAG+AGG 0.596722 7_2:-84186771 None:intergenic
TGCAAGATAATAAATTTCCG+TGG 0.603647 7_2:+84185003 Msa1083880:CDS
TCAGAGAGTGAAAATGGTGA+GGG 0.605160 7_2:+84184269 Msa1083880:exon
TCGGTCAACAGCTCTCTGAA+AGG 0.608978 7_2:+84184412 Msa1083880:CDS
GCTCGCAGGATCGAAGCCAT+TGG 0.613190 7_2:+84184381 Msa1083880:CDS
TGTCTTGACAAAAGAAAGGA+AGG 0.613402 7_2:+84183993 None:intergenic
GGGGATACACACATGCTGGA+AGG 0.619761 7_2:-84185211 None:intergenic
GAAGCCATTGGTTATCAGGT+CGG 0.622295 7_2:+84184393 Msa1083880:CDS
AACTGAACTAACATTATCAG+TGG 0.624516 7_2:-84185051 None:intergenic
TTGACCGACCTGATAACCAA+TGG 0.626958 7_2:-84184397 None:intergenic
TGTGTAATTCAGATATACGA+TGG 0.627817 7_2:+84184752 Msa1083880:intron
TGATAGCTTGATGACGGAGA+TGG 0.641800 7_2:+84184311 Msa1083880:CDS
ATGCATCTTTATTTCCCATG+CGG 0.650443 7_2:+84185125 Msa1083880:CDS
GGTGCACTGTTGAAAGACAA+TGG 0.652678 7_2:+84186721 Msa1083880:CDS
AGCATTCGTTCCATACAAGA+GGG 0.672193 7_2:-84186770 None:intergenic
AATTCAGATATACGATGGAG+CGG 0.678919 7_2:+84184757 Msa1083880:intron
TCCAAATGATCACCAAACCG+AGG 0.695841 7_2:-84184780 None:intergenic
ATGTCTGCAGAAACTGCACA+GGG 0.724210 7_2:-84185182 None:intergenic
AAACACGATGATGAGTAGCG+AGG 0.747363 7_2:+84184181 Msa1083880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG + chr7_2:84184904-84184923 Msa1083880:intron 0.0%
!!! TTCTTGATATTAATTATTTT+TGG + chr7_2:84184510-84184529 Msa1083880:intron 10.0%
!!! TTTTTTTTATAAAAAACTTC+AGG - chr7_2:84185827-84185846 None:intergenic 10.0%
!! ATTAGATTAAATTTATATGT+CGG + chr7_2:84186876-84186895 Msa1083880:three_prime_UTR 10.0%
!!! TGATATTAATTATTTTTGGT+AGG + chr7_2:84184514-84184533 Msa1083880:intron 15.0%
!!! TGAATAATTTTATTCCATAA+TGG - chr7_2:84185935-84185954 None:intergenic 15.0%
!! ATGGAATAAAATTATTCAAA+AGG + chr7_2:84185937-84185956 Msa1083880:intron 15.0%
!! AAATATGTAAACAAGATAAA+TGG - chr7_2:84186390-84186409 None:intergenic 15.0%
!!! AGTAATTTCCTTTTCTTTTT+TGG + chr7_2:84184076-84184095 Msa1083880:five_prime_UTR 20.0%
!! TCATGAAATTGTAATCAAAT+TGG + chr7_2:84184559-84184578 Msa1083880:intron 20.0%
!!! TTTTCATTTTTAGTGTTTTC+TGG + chr7_2:84185336-84185355 Msa1083880:intron 20.0%
!!! AAAGTTTCTTTGTTAGATTT+TGG + chr7_2:84185494-84185513 Msa1083880:intron 20.0%
!!! ATATCCTTTTACACATTATT+TGG + chr7_2:84186421-84186440 Msa1083880:intron 20.0%
!! ATTTATCAAAACACTTCATT+TGG - chr7_2:84186630-84186649 None:intergenic 20.0%
!!! ATGAAGTGTTTTGATAAATT+AGG + chr7_2:84186631-84186650 Msa1083880:intron 20.0%
!!! TTTTGATAAATTAGGACTTT+TGG + chr7_2:84186639-84186658 Msa1083880:intron 20.0%
! GGTAATAGAAATTCCTTATA+TGG + chr7_2:84184036-84184055 Msa1083880:five_prime_UTR 25.0%
! AAGGTGCATTAGTAAAAAAT+GGG + chr7_2:84184116-84184135 Msa1083880:five_prime_UTR 25.0%
! GGTAATAGAAATTCCTTATA+TGG + chr7_2:84184036-84184055 Msa1083880:five_prime_UTR 25.0%
!! ATTTTCTCGAATTACTACAT+AGG - chr7_2:84184627-84184646 None:intergenic 25.0%
!!! TTTTTGTGTTTTGATTTCCA+TGG + chr7_2:84184943-84184962 Msa1083880:intron 25.0%
!! CATAGAAGAGAAGATTTTTA+AGG + chr7_2:84185298-84185317 Msa1083880:intron 25.0%
! TGTGAATAATTTGATCTGTT+TGG + chr7_2:84185387-84185406 Msa1083880:intron 25.0%
! TGTTTGGAAATGTTTAAACA+GGG + chr7_2:84185403-84185422 Msa1083880:intron 25.0%
! TTATTGATCAAATCTCTGTT+AGG + chr7_2:84185525-84185544 Msa1083880:intron 25.0%
! CTATATATCTCTTTCCATTA+TGG + chr7_2:84185918-84185937 Msa1083880:intron 25.0%
! ATGAAACATAACTTCACTAT+TGG + chr7_2:84186118-84186137 Msa1083880:intron 25.0%
! TCACATATTCAATTTATACC+TGG + chr7_2:84186210-84186229 Msa1083880:intron 25.0%
!! GAACTTATCATGCTTTTATA+CGG - chr7_2:84186463-84186482 None:intergenic 25.0%
!! ACTATCAAATACTATTGACT+TGG + chr7_2:84186588-84186607 Msa1083880:intron 25.0%
! GAAGGTGCATTAGTAAAAAA+GGG + chr7_2:84184011-84184030 Msa1083880:five_prime_UTR 30.0%
AAGGTGCATTAGTAAAAAAG+GGG + chr7_2:84184012-84184031 Msa1083880:five_prime_UTR 30.0%
!! ATTCCTTATATGGAAGTGTT+AGG + chr7_2:84184046-84184065 Msa1083880:five_prime_UTR 30.0%
!! TTCCTTATATGGAAGTGTTA+GGG + chr7_2:84184047-84184066 Msa1083880:five_prime_UTR 30.0%
TGTCAAGACCAAAAAAGAAA+AGG - chr7_2:84184087-84184106 None:intergenic 30.0%
!!! TTTTGGTCTTGACAAAAGAA+AGG + chr7_2:84184093-84184112 Msa1083880:five_prime_UTR 30.0%
! GAAGGTGCATTAGTAAAAAA+TGG + chr7_2:84184011-84184030 Msa1083880:five_prime_UTR 30.0%
!! TTTTCACTCTCTGAAGAAAA+TGG - chr7_2:84184263-84184282 None:intergenic 30.0%
! TTTTCTTCAGAGAGTGAAAA+TGG + chr7_2:84184263-84184282 Msa1083880:exon 30.0%
GATGAAGAAAGAGAGAATTA+GGG - chr7_2:84184452-84184471 None:intergenic 30.0%
AGATGAAGAAAGAGAGAATT+AGG - chr7_2:84184453-84184472 None:intergenic 30.0%
TGTGTAATTCAGATATACGA+TGG + chr7_2:84184752-84184771 Msa1083880:intron 30.0%
! AGTTCATTTGCAAGGATTTT+TGG + chr7_2:84184811-84184830 Msa1083880:CDS 30.0%
ACAACTTGAAAACTAACCAT+AGG + chr7_2:84184859-84184878 Msa1083880:CDS 30.0%
CAACTTGAAAACTAACCATA+GGG + chr7_2:84184860-84184879 Msa1083880:CDS 30.0%
! ATTTCCATGGTTGTGTTATT+TGG + chr7_2:84184956-84184975 Msa1083880:intron 30.0%
TGCAAGATAATAAATTTCCG+TGG + chr7_2:84185003-84185022 Msa1083880:CDS 30.0%
AACTGAACTAACATTATCAG+TGG - chr7_2:84185054-84185073 None:intergenic 30.0%
! TGATAATGTTAGTTCAGTTG+AGG + chr7_2:84185055-84185074 Msa1083880:CDS 30.0%
CTGTTTGGAAATGTTTAAAC+AGG + chr7_2:84185402-84185421 Msa1083880:intron 30.0%
TAGAGTAGTTCATACTCAAT+GGG + chr7_2:84185428-84185447 Msa1083880:intron 30.0%
TCTATGGTAAATAACCAAGA+AGG + chr7_2:84185635-84185654 Msa1083880:intron 30.0%
CTATGGTAAATAACCAAGAA+GGG + chr7_2:84185636-84185655 Msa1083880:intron 30.0%
TATGGTAAATAACCAAGAAG+GGG + chr7_2:84185637-84185656 Msa1083880:intron 30.0%
!! ACTTCAGGTTTATTTCTAAC+TGG - chr7_2:84185812-84185831 None:intergenic 30.0%
CTTAGTGACATGATTATCAT+TGG - chr7_2:84185875-84185894 None:intergenic 30.0%
!! AATTATTCAAAAGGTGCTGA+TGG + chr7_2:84185946-84185965 Msa1083880:intron 30.0%
CCTTCAATTTGTGTCAAATA+CGG + chr7_2:84186317-84186336 Msa1083880:intron 30.0%
!!! ATTAGGACTTTTGGTTCTTT+TGG + chr7_2:84186648-84186667 Msa1083880:intron 30.0%
TTCATGGAGATTACGATAAT+TGG + chr7_2:84186679-84186698 Msa1083880:CDS 30.0%
AATGTTATATCCCTCTTGTA+TGG + chr7_2:84186760-84186779 Msa1083880:exon 30.0%
! TGTTACTTGTGTTTCTTTAC+AGG + chr7_2:84186814-84186833 Msa1083880:three_prime_UTR 30.0%
! TTTTCCTTTTCCTTTTTGTC+TGG + chr7_2:84186850-84186869 Msa1083880:three_prime_UTR 30.0%
! GGAAGGTGCATTAGTAAAAA+AGG + chr7_2:84184010-84184029 Msa1083880:five_prime_UTR 35.0%
TACCCTAACACTTCCATATA+AGG - chr7_2:84184052-84184071 None:intergenic 35.0%
GTGCATTAGTAAAAAATGGG+TGG + chr7_2:84184119-84184138 Msa1083880:five_prime_UTR 35.0%
TCCTTATATGGATCTGAAAG+AGG + chr7_2:84184152-84184171 Msa1083880:five_prime_UTR 35.0%
CTGTTATCACACAACATAGT+AGG + chr7_2:84184477-84184496 Msa1083880:intron 35.0%
AATTCAGATATACGATGGAG+CGG + chr7_2:84184757-84184776 Msa1083880:intron 35.0%
GGCAATTAAGTTCATTTGCA+AGG + chr7_2:84184803-84184822 Msa1083880:CDS 35.0%
AGAACCAAATAACACAACCA+TGG - chr7_2:84184963-84184982 None:intergenic 35.0%
GAACTAACATTATCAGTGGA+TGG - chr7_2:84185050-84185069 None:intergenic 35.0%
! ATGCATCTTTATTTCCCATG+CGG + chr7_2:84185125-84185144 Msa1083880:CDS 35.0%
CTAGAGTAGTTCATACTCAA+TGG + chr7_2:84185427-84185446 Msa1083880:intron 35.0%
CATCATTGTCTGATTCTCTA+TGG + chr7_2:84185619-84185638 Msa1083880:intron 35.0%
TCACAAAACTATCTGTGATC+AGG + chr7_2:84185750-84185769 Msa1083880:intron 35.0%
!! CAGGTTTATTTCTAACTGGA+GGG - chr7_2:84185808-84185827 None:intergenic 35.0%
!! TCAGGTTTATTTCTAACTGG+AGG - chr7_2:84185809-84185828 None:intergenic 35.0%
! ATTAGAGCATCTCATGATTC+AGG + chr7_2:84186078-84186097 Msa1083880:intron 35.0%
AACATAACTTCACTATTGGC+AGG + chr7_2:84186122-84186141 Msa1083880:intron 35.0%
! TATTAGCCTAAGATGCATAC+AGG - chr7_2:84186148-84186167 None:intergenic 35.0%
ACAATAACAACATGTACTCC+AGG - chr7_2:84186231-84186250 None:intergenic 35.0%
CAGTCTGTCATGAATAGATA+GGG - chr7_2:84186275-84186294 None:intergenic 35.0%
ACAGTCTGTCATGAATAGAT+AGG - chr7_2:84186276-84186295 None:intergenic 35.0%
CCGTATTTGACACAAATTGA+AGG - chr7_2:84186320-84186339 None:intergenic 35.0%
AGAGCAAATAGAAAGATGCT+TGG - chr7_2:84186345-84186364 None:intergenic 35.0%
CAAGATAAATGGTCATGCAT+TGG - chr7_2:84186379-84186398 None:intergenic 35.0%
CCTGCCAAATAATGTGTAAA+AGG - chr7_2:84186428-84186447 None:intergenic 35.0%
! CCTTTTACACATTATTTGGC+AGG + chr7_2:84186425-84186444 Msa1083880:intron 35.0%
TCACTTGAATTACTGATGTG+AGG + chr7_2:84186481-84186500 Msa1083880:intron 35.0%
CACTTGAATTACTGATGTGA+GGG + chr7_2:84186482-84186501 Msa1083880:intron 35.0%
ACTTGAATTACTGATGTGAG+GGG + chr7_2:84186483-84186502 Msa1083880:intron 35.0%
! TGATTTTGTCCCAAATTTGC+TGG + chr7_2:84186535-84186554 Msa1083880:intron 35.0%
!! TGACTTGGTTGTATAGAAAG+AGG + chr7_2:84186603-84186622 Msa1083880:intron 35.0%
ATCTAATCCTCCAGACAAAA+AGG - chr7_2:84186863-84186882 None:intergenic 35.0%
GTGCATTAGTAAAAAAGGGG+AGG + chr7_2:84184015-84184034 Msa1083880:five_prime_UTR 40.0%
GGTCTTGACAAAAGAAAGGA+AGG + chr7_2:84184097-84184116 Msa1083880:five_prime_UTR 40.0%
GCCTCTTTCAGATCCATATA+AGG - chr7_2:84184156-84184175 None:intergenic 40.0%
TATGGATCTGAAAGAGGCAA+AGG + chr7_2:84184158-84184177 Msa1083880:five_prime_UTR 40.0%
TTCAGAGAGTGAAAATGGTG+AGG + chr7_2:84184268-84184287 Msa1083880:exon 40.0%
TCAGAGAGTGAAAATGGTGA+GGG + chr7_2:84184269-84184288 Msa1083880:exon 40.0%
!! TTGCGTTGATAGCTTGATGA+CGG + chr7_2:84184305-84184324 Msa1083880:CDS 40.0%
TGAATGTAGTCACATGTGTC+AGG + chr7_2:84184655-84184674 Msa1083880:intron 40.0%
GAATGTAGTCACATGTGTCA+GGG + chr7_2:84184656-84184675 Msa1083880:intron 40.0%
! GTCAGATAGGTTATGATGGA+TGG + chr7_2:84184678-84184697 Msa1083880:intron 40.0%
!!! TTGCAAGGATTTTTGGTCTG+AGG + chr7_2:84184818-84184837 Msa1083880:CDS 40.0%
! AACCATAGGGTGAGTTGAAT+TGG + chr7_2:84184873-84184892 Msa1083880:intron 40.0%
AACCAATTCAACTCACCCTA+TGG - chr7_2:84184878-84184897 None:intergenic 40.0%
!! TGTTATTTGGTTCTGCTGCA+GGG + chr7_2:84184969-84184988 Msa1083880:intron 40.0%
! ATAAATTTCCGTGGCTTGCA+CGG + chr7_2:84185012-84185031 Msa1083880:CDS 40.0%
TGAGGATTATTCTGCACCTA+CGG + chr7_2:84185073-84185092 Msa1083880:CDS 40.0%
! TGCATCTTTATTTCCCATGC+GGG + chr7_2:84185126-84185145 Msa1083880:CDS 40.0%
CATGGGGTTTCTACTATTGT+GGG + chr7_2:84185670-84185689 Msa1083880:intron 40.0%
ATGGGGTTTCTACTATTGTG+GGG + chr7_2:84185671-84185690 Msa1083880:intron 40.0%
!! TACTATTGTGGGGGTTGATA+TGG + chr7_2:84185681-84185700 Msa1083880:intron 40.0%
!! TTTAGCCTTAACCCTATGAG+TGG + chr7_2:84185714-84185733 Msa1083880:intron 40.0%
!! AAAAGGTGCTGATGGTAAAG+TGG + chr7_2:84185954-84185973 Msa1083880:intron 40.0%
AAGGAATTTGCATGCTGCAA+TGG - chr7_2:84186301-84186320 None:intergenic 40.0%
!! TCTTTTGGCTGCAGATTTCA+TGG + chr7_2:84186663-84186682 Msa1083880:intron 40.0%
GTGCACTGTTGAAAGACAAT+GGG + chr7_2:84186722-84186741 Msa1083880:CDS 40.0%
AGCATTCGTTCCATACAAGA+GGG - chr7_2:84186773-84186792 None:intergenic 40.0%
TAGCATTCGTTCCATACAAG+AGG - chr7_2:84186774-84186793 None:intergenic 40.0%
! TCCTTTTCCTTTTTGTCTGG+AGG + chr7_2:84186853-84186872 Msa1083880:three_prime_UTR 40.0%
TCCTCCAGACAAAAAGGAAA+AGG - chr7_2:84186857-84186876 None:intergenic 40.0%
AAACACGATGATGAGTAGCG+AGG + chr7_2:84184181-84184200 Msa1083880:five_prime_UTR 45.0%
!! TGATAGCTTGATGACGGAGA+TGG + chr7_2:84184311-84184330 Msa1083880:CDS 45.0%
! GATCGAAGCCATTGGTTATC+AGG + chr7_2:84184389-84184408 Msa1083880:CDS 45.0%
! GAAGCCATTGGTTATCAGGT+CGG + chr7_2:84184393-84184412 Msa1083880:CDS 45.0%
TTGACCGACCTGATAACCAA+TGG - chr7_2:84184400-84184419 None:intergenic 45.0%
! TCAACAGCTCTCTGAAAGGT+TGG + chr7_2:84184416-84184435 Msa1083880:intron 45.0%
ACTACATAGGTCGTGCTTCA+TGG - chr7_2:84184614-84184633 None:intergenic 45.0%
CAGGGTCAGATAGGTTATGA+TGG + chr7_2:84184674-84184693 Msa1083880:intron 45.0%
TCCAAATGATCACCAAACCG+AGG - chr7_2:84184783-84184802 None:intergenic 45.0%
!! TCGGTTTGGTGATCATTTGG+AGG + chr7_2:84184782-84184801 Msa1083880:CDS 45.0%
!! GTGTTATTTGGTTCTGCTGC+AGG + chr7_2:84184968-84184987 Msa1083880:intron 45.0%
TAGAGGAGCTCTTTCCAACT+TGG + chr7_2:84185154-84185173 Msa1083880:CDS 45.0%
AGAGGAGCTCTTTCCAACTT+GGG + chr7_2:84185155-84185174 Msa1083880:CDS 45.0%
ATGTCTGCAGAAACTGCACA+GGG - chr7_2:84185185-84185204 None:intergenic 45.0%
TATGTCTGCAGAAACTGCAC+AGG - chr7_2:84185186-84185205 None:intergenic 45.0%
AGAGAGAAAGAGAGGGAGAT+GGG - chr7_2:84185236-84185255 None:intergenic 45.0%
GAGAGAGAGAGAGAAAGAGA+GGG - chr7_2:84185243-84185262 None:intergenic 45.0%
AGAGAGAGAGAGAGAAAGAG+AGG - chr7_2:84185244-84185263 None:intergenic 45.0%
TAGTAGAAACCCCATGCACT+AGG - chr7_2:84185666-84185685 None:intergenic 45.0%
GCATGGGGTTTCTACTATTG+TGG + chr7_2:84185669-84185688 Msa1083880:intron 45.0%
TGGGGTTTCTACTATTGTGG+GGG + chr7_2:84185672-84185691 Msa1083880:intron 45.0%
!!! GATAGTTTTGTGACCCTCTC+AGG - chr7_2:84185743-84185762 None:intergenic 45.0%
TACTGAAGCAACCAATGCAG+GGG - chr7_2:84186010-84186029 None:intergenic 45.0%
GTACTGAAGCAACCAATGCA+GGG - chr7_2:84186011-84186030 None:intergenic 45.0%
TGTACTGAAGCAACCAATGC+AGG - chr7_2:84186012-84186031 None:intergenic 45.0%
!! TGCATTGGTTGCTTCAGTAC+AGG + chr7_2:84186011-84186030 Msa1083880:intron 45.0%
!! TTGTCCCAAATTTGCTGGAG+TGG + chr7_2:84186540-84186559 Msa1083880:intron 45.0%
!! TGTCCCAAATTTGCTGGAGT+GGG + chr7_2:84186541-84186560 Msa1083880:intron 45.0%
TTCCCCACTCCAGCAAATTT+GGG - chr7_2:84186547-84186566 None:intergenic 45.0%
ATTCCCCACTCCAGCAAATT+TGG - chr7_2:84186548-84186567 None:intergenic 45.0%
GGTCTGTTGCTCACATACTA+TGG + chr7_2:84186700-84186719 Msa1083880:CDS 45.0%
GGTGCACTGTTGAAAGACAA+TGG + chr7_2:84186721-84186740 Msa1083880:CDS 45.0%
! AGCAGCGAGTTCAGGTTTGT+TGG - chr7_2:84184364-84184383 None:intergenic 50.0%
TCGGTCAACAGCTCTCTGAA+AGG + chr7_2:84184412-84184431 Msa1083880:CDS 50.0%
CACATGTGTCAGGGTCAGAT+AGG + chr7_2:84184665-84184684 Msa1083880:intron 50.0%
!! GCCTCGGTTTGGTGATCATT+TGG + chr7_2:84184779-84184798 Msa1083880:CDS 50.0%
TGCACCTACGGCTGAAAGTA+AGG + chr7_2:84185085-84185104 Msa1083880:CDS 50.0%
TTCCCATGCGGGATCATTAG+AGG + chr7_2:84185137-84185156 Msa1083880:CDS 50.0%
CTCCTCTAATGATCCCGCAT+GGG - chr7_2:84185142-84185161 None:intergenic 50.0%
TGCACAGGGAATTCCCAAGT+TGG - chr7_2:84185171-84185190 None:intergenic 50.0%
AGAGAAAGAGAGGGAGATGG+GGG - chr7_2:84185234-84185253 None:intergenic 50.0%
GAGAGAAAGAGAGGGAGATG+GGG - chr7_2:84185235-84185254 None:intergenic 50.0%
GAGAGAGAAAGAGAGGGAGA+TGG - chr7_2:84185237-84185256 None:intergenic 50.0%
GGTCTCCACTCATAGGGTTA+AGG - chr7_2:84185722-84185741 None:intergenic 50.0%
CTCTCAGGTCTCCACTCATA+GGG - chr7_2:84185728-84185747 None:intergenic 50.0%
CTATGAGTGGAGACCTGAGA+GGG + chr7_2:84185727-84185746 Msa1083880:intron 50.0%
TCTAACTGGAGGGTGAGACT+TGG - chr7_2:84185798-84185817 None:intergenic 50.0%
AATTCTACCAGCCCCTGCAT+TGG + chr7_2:84185996-84186015 Msa1083880:intron 50.0%
!! GTCCCAAATTTGCTGGAGTG+GGG + chr7_2:84186542-84186561 Msa1083880:intron 50.0%
GATATACGATGGAGCGGCCT+CGG + chr7_2:84184763-84184782 Msa1083880:intron 55.0%
GCTGCCTTACTTTCAGCCGT+AGG - chr7_2:84185092-84185111 None:intergenic 55.0%
GGCTGAAAGTAAGGCAGCAC+AGG + chr7_2:84185094-84185113 Msa1083880:CDS 55.0%
GCTCCTCTAATGATCCCGCA+TGG - chr7_2:84185143-84185162 None:intergenic 55.0%
GGGGATACACACATGCTGGA+AGG - chr7_2:84185214-84185233 None:intergenic 55.0%
ATGGGGGGATACACACATGC+TGG - chr7_2:84185218-84185237 None:intergenic 55.0%
GAGAAAGAGAGGGAGATGGG+GGG - chr7_2:84185233-84185252 None:intergenic 55.0%
CCTCTCAGGTCTCCACTCAT+AGG - chr7_2:84185729-84185748 None:intergenic 55.0%
CCTATGAGTGGAGACCTGAG+AGG + chr7_2:84185726-84185745 Msa1083880:intron 55.0%
GGCAGGCCTGTATGCATCTT+AGG + chr7_2:84186139-84186158 Msa1083880:intron 55.0%
AACCTGAACTCGCTGCTCGC+AGG + chr7_2:84184367-84184386 Msa1083880:CDS 60.0%
ATCCTGCGAGCAGCGAGTTC+AGG - chr7_2:84184372-84184391 None:intergenic 60.0%
GCTCGCAGGATCGAAGCCAT+TGG + chr7_2:84184381-84184400 Msa1083880:CDS 60.0%
! TCCGTGGCTTGCACGGATGT+CGG + chr7_2:84185019-84185038 Msa1083880:CDS 60.0%
ACCGACATCCGTGCAAGCCA+CGG - chr7_2:84185023-84185042 None:intergenic 60.0%
TGCACTAGGCTGCCCCTTCT+TGG - chr7_2:84185652-84185671 None:intergenic 60.0%
AGAAGGGGCAGCCTAGTGCA+TGG + chr7_2:84185652-84185671 Msa1083880:intron 60.0%
GAAGGGGCAGCCTAGTGCAT+GGG + chr7_2:84185653-84185672 Msa1083880:intron 60.0%
AAGGGGCAGCCTAGTGCATG+GGG + chr7_2:84185654-84185673 Msa1083880:intron 60.0%
GAAGCAACCAATGCAGGGGC+TGG - chr7_2:84186006-84186025 None:intergenic 60.0%
ACGATGGAGCGGCCTCGGTT+TGG + chr7_2:84184768-84184787 Msa1083880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 84184008 84186913 84184008 ID=Msa1083880;Name=Msa1083880
chr7_2 mRNA 84184008 84186913 84184008 ID=Msa1083880-mRNA-1;Parent=Msa1083880;Name=Msa1083880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=274|0.66|0.75|1|1|1|4|152|196
chr7_2 exon 84184008 84184433 84184008 ID=Msa1083880-mRNA-1:exon:22320;Parent=Msa1083880-mRNA-1
chr7_2 exon 84184764 84184881 84184764 ID=Msa1083880-mRNA-1:exon:22321;Parent=Msa1083880-mRNA-1
chr7_2 exon 84184990 84185225 84184990 ID=Msa1083880-mRNA-1:exon:22322;Parent=Msa1083880-mRNA-1
chr7_2 exon 84186677 84186913 84186677 ID=Msa1083880-mRNA-1:exon:22323;Parent=Msa1083880-mRNA-1
chr7_2 five_prime_UTR 84184008 84184281 84184008 ID=Msa1083880-mRNA-1:five_prime_utr;Parent=Msa1083880-mRNA-1
chr7_2 CDS 84184282 84184433 84184282 ID=Msa1083880-mRNA-1:cds;Parent=Msa1083880-mRNA-1
chr7_2 CDS 84184764 84184881 84184764 ID=Msa1083880-mRNA-1:cds;Parent=Msa1083880-mRNA-1
chr7_2 CDS 84184990 84185225 84184990 ID=Msa1083880-mRNA-1:cds;Parent=Msa1083880-mRNA-1
chr7_2 CDS 84186677 84186761 84186677 ID=Msa1083880-mRNA-1:cds;Parent=Msa1083880-mRNA-1
chr7_2 three_prime_UTR 84186762 84186913 84186762 ID=Msa1083880-mRNA-1:three_prime_utr;Parent=Msa1083880-mRNA-1
Gene Sequence

>Msa1083880

ATGGTGAGGGAAGTTTCAGAGAGTTGCGTTGATAGCTTGATGACGGAGATGGTTGCTTGTTATTGCAATCGATTCTATGCCAACAAACCTGAACTCGCTGCTCGCAGGATCGAAGCCATTGGTTATCAGGTCGGTCAACAGCTCTCTGAAAGATATACGATGGAGCGGCCTCGGTTTGGTGATCATTTGGAGGCAATTAAGTTCATTTGCAAGGATTTTTGGTCTGAGGTGTTTAAGAAGCAGATAGACAACTTGAAAACTAACCATAGGGGTACATTTGTGTTGCAAGATAATAAATTTCCGTGGCTTGCACGGATGTCGGTTGATCCATCCACTGATAATGTTAGTTCAGTTGAGGATTATTCTGCACCTACGGCTGAAAGTAAGGCAGCACAGGCAATGAGCATGCATCTTTATTTCCCATGCGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCCTGTGCAGTTTCTGCAGACATATCAAGCCTTCCAGCATGTGTATTTCATGGAGATTACGATAATTGGTCTGTTGCTCACATACTATGGTGCACTGTTGAAAGACAATGGGAGTTTCAGTCATTGTAA

Protein sequence

>Msa1083880

MVREVSESCVDSLMTEMVACYCNRFYANKPELAARRIEAIGYQVGQQLSERYTMERPRFGDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFPWLARMSVDPSTDNVSSVEDYSAPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACVFHGDYDNWSVAHILWCTVERQWEFQSL*