Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367890 | XP_003604013.1 | 95.396 | 695 | 17 | 2 | 1 | 684 | 1 | 691 | 0.0 | 1358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367890 | sp|Q9T0J6|DUS3L_ARATH | 62.573 | 684 | 217 | 10 | 10 | 684 | 38 | 691 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367890 | G7J7T8 | 95.396 | 695 | 17 | 2 | 1 | 684 | 1 | 691 | 0.0 | 1358 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1367890 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365140 | Msa1367890 | 0.947481 | 6.186907e-106 | -8.615850e-47 |
| Msa0190240 | Msa1367890 | 0.812887 | 3.381031e-51 | -8.615850e-47 |
| Msa1021470 | Msa1367890 | 0.800253 | 1.571674e-48 | -8.615850e-47 |
| Msa1060230 | Msa1367890 | 0.807545 | 4.796788e-50 | -8.615850e-47 |
| Msa1148910 | Msa1367890 | 0.800938 | 1.139505e-48 | -8.615850e-47 |
| Msa0516810 | Msa1367890 | 0.808375 | 3.194189e-50 | -8.615850e-47 |
| Msa0524110 | Msa1367890 | 0.981435 | 1.391666e-152 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367890 | MtrunA17_Chr3g0145331 | 95.396 | 695 | 17 | 2 | 1 | 684 | 1 | 691 | 0.0 | 1358 |
| Msa1367890 | MtrunA17_Chr8g0366841 | 28.000 | 250 | 157 | 7 | 327 | 560 | 1 | 243 | 4.42e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367890 | AT4G38890.1 | 62.573 | 684 | 217 | 10 | 10 | 684 | 38 | 691 | 0.0 | 860 |
| Msa1367890 | AT3G49640.4 | 28.846 | 312 | 180 | 12 | 327 | 618 | 1 | 290 | 6.46e-27 | 112 |
| Msa1367890 | AT3G49640.1 | 28.846 | 312 | 180 | 12 | 327 | 618 | 1 | 290 | 2.45e-26 | 110 |
| Msa1367890 | AT3G49640.3 | 31.034 | 232 | 130 | 7 | 327 | 538 | 1 | 222 | 1.70e-21 | 94.7 |
| Msa1367890 | AT3G49640.5 | 30.045 | 223 | 129 | 9 | 402 | 618 | 50 | 251 | 2.73e-20 | 91.7 |
| Msa1367890 | AT3G49640.2 | 30.045 | 223 | 129 | 9 | 402 | 618 | 50 | 251 | 8.03e-20 | 90.9 |
| Msa1367890 | AT5G67220.1 | 27.404 | 208 | 143 | 4 | 330 | 535 | 87 | 288 | 4.21e-16 | 81.6 |
Find 172 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTACTTGCAAATTATT+AGG | 0.146154 | tig0018560:-13296 | None:intergenic |
| CATTCATCTGAAGATTTATT+TGG | 0.158032 | tig0018560:+12679 | Msa1367890:CDS |
| AAAAGAAGCTTATTGATTTC+AGG | 0.171029 | tig0018560:+12110 | Msa1367890:CDS |
| CCACTACTTGCAAATTATTA+GGG | 0.199094 | tig0018560:-13295 | None:intergenic |
| TCTGAAGGGGCTTGCCCTTA+TGG | 0.207997 | tig0018560:+10862 | Msa1367890:CDS |
| TTTGAGTTTGGCATCAGTTT+TGG | 0.209531 | tig0018560:-11019 | None:intergenic |
| GTACATACCTGTTGGTCTTT+TGG | 0.213055 | tig0018560:+14178 | Msa1367890:CDS |
| TATTGACATTGTTGTGAATA+AGG | 0.222961 | tig0018560:+12804 | Msa1367890:CDS |
| CGGAGAGTTTGCAAAGTATT+AGG | 0.224724 | tig0018560:+12181 | Msa1367890:CDS |
| TTCAAGCTTAGATCAGTTTC+TGG | 0.235550 | tig0018560:-12073 | None:intergenic |
| GAAAATACCTTTATAGTTAC+TGG | 0.254912 | tig0018560:-12904 | None:intergenic |
| GGCAATGTGCACAAATCTTT+TGG | 0.260235 | tig0018560:+12228 | Msa1367890:CDS |
| AAGGAAAGGTGTGAAGTTAA+TGG | 0.263218 | tig0018560:+10946 | Msa1367890:CDS |
| TTTCATTTAGAGAGCGAAAA+TGG | 0.275072 | tig0018560:+10323 | None:intergenic |
| ATCAAGCATGTGGCAAGTTC+AGG | 0.280736 | tig0018560:-13371 | None:intergenic |
| CTGTTGGAAATCTCCCTTTC+CGG | 0.300157 | tig0018560:+12161 | Msa1367890:CDS |
| TTCAATCCGTTAGAAGATAA+AGG | 0.302002 | tig0018560:-10925 | None:intergenic |
| ACAGCTCGCCCTACAGTATC+TGG | 0.309018 | tig0018560:-12724 | None:intergenic |
| AGTGCAGAAATTGGCTGATT+TGG | 0.309679 | tig0018560:+10816 | Msa1367890:intron |
| CAAATTATTAGGGGCTTTCC+TGG | 0.310598 | tig0018560:-13285 | None:intergenic |
| TCACCTGACTTGGCAATGTT+TGG | 0.321046 | tig0018560:-10648 | None:intergenic |
| GAGCTGAAAATGGTTAATTC+TGG | 0.322645 | tig0018560:+15436 | Msa1367890:exon |
| TGCAGCTTCCGTCCACAATT+TGG | 0.322863 | tig0018560:-12012 | None:intergenic |
| TGGCGTCCACCATCTTACTA+TGG | 0.337133 | tig0018560:+14224 | Msa1367890:CDS |
| TAAGCATTTGATTTATGCTT+TGG | 0.341936 | tig0018560:-15408 | None:intergenic |
| CTGAAGGGGCTTGCCCTTAT+GGG | 0.347394 | tig0018560:+10863 | Msa1367890:CDS |
| TTCTTCTCCTTGGCGAGAAC+GGG | 0.350694 | tig0018560:-10480 | None:intergenic |
| CCTCCGACTCTGCAGCTGAC+TGG | 0.356032 | tig0018560:+14273 | Msa1367890:CDS |
| CTGGATATTTACAGAGATAA+AGG | 0.364629 | tig0018560:+13572 | Msa1367890:CDS |
| TTATTCACAACAATGTCAAT+AGG | 0.379362 | tig0018560:-12802 | None:intergenic |
| ACTCAAACGTGAACGTCTTC+AGG | 0.379434 | tig0018560:+10515 | Msa1367890:CDS |
| TGAAATAACATGCGGTGAAA+TGG | 0.380122 | tig0018560:+12207 | Msa1367890:CDS |
| GCTTACGATAGAGCTGAAAA+TGG | 0.381878 | tig0018560:+15426 | Msa1367890:CDS |
| TGATAGCAAACTTTAGCTCT+TGG | 0.383995 | tig0018560:+13177 | Msa1367890:CDS |
| CGAAGGAAGTCCTTCTTAAC+AGG | 0.387527 | tig0018560:-10396 | None:intergenic |
| TGGTTCCACAACGAATAAAT+TGG | 0.387831 | tig0018560:+14204 | Msa1367890:CDS |
| ATTGACATTGTTGTGAATAA+GGG | 0.391891 | tig0018560:+12805 | Msa1367890:CDS |
| CTTTATCTCTGTAAATATCC+AGG | 0.392779 | tig0018560:-13571 | None:intergenic |
| ACTCAAAACTCTTGGTCTCT+TGG | 0.396620 | tig0018560:+11035 | Msa1367890:CDS |
| CGACATTGGGACATCAGTTC+TGG | 0.407363 | tig0018560:+13600 | Msa1367890:CDS |
| CGATATTCCAGTAACTATAA+AGG | 0.408639 | tig0018560:+12897 | Msa1367890:CDS |
| AATGGCTTAGCTACACTTGT+AGG | 0.413091 | tig0018560:+14156 | Msa1367890:CDS |
| AAAGAAGCTTATTGATTTCA+GGG | 0.413252 | tig0018560:+12111 | Msa1367890:CDS |
| CTCCGACTCTGCAGCTGACT+GGG | 0.414717 | tig0018560:+14274 | Msa1367890:CDS |
| CGATTATCAGAGATGTTACT+TGG | 0.415656 | tig0018560:+15357 | Msa1367890:CDS |
| CTGATGATGACGGCTCTTGT+GGG | 0.420813 | tig0018560:+11704 | Msa1367890:CDS |
| GACTACCAGGCGGTTCTTGT+TGG | 0.425033 | tig0018560:+14133 | Msa1367890:CDS |
| CCTTGAATGCTTGAATATCA+TGG | 0.425429 | tig0018560:-10710 | None:intergenic |
| TTTATCTTCTAACGGATTGA+AGG | 0.427366 | tig0018560:+10927 | Msa1367890:CDS |
| TCAAGCTTAGATCAGTTTCT+GGG | 0.431326 | tig0018560:-12072 | None:intergenic |
| GCCCCTTCAGATTTCAGAAA+AGG | 0.433089 | tig0018560:-10850 | None:intergenic |
| ATTATTCAGAATAAGTCAAA+AGG | 0.433111 | tig0018560:+11565 | Msa1367890:intron |
| TATTCACAACAATGTCAATA+GGG | 0.433555 | tig0018560:-12801 | None:intergenic |
| GCGTTTAGATTTCTTCTCCT+TGG | 0.436186 | tig0018560:-10490 | None:intergenic |
| TGTCCAAACATTGCCAAGTC+AGG | 0.437155 | tig0018560:+10645 | Msa1367890:CDS |
| GATAGCAAACTTTAGCTCTT+GGG | 0.437315 | tig0018560:+13178 | Msa1367890:CDS |
| GAGGGTGGCGAGGATGATCC+TGG | 0.442746 | tig0018560:+10345 | Msa1367890:CDS |
| TCTGATGATGACGGCTCTTG+TGG | 0.451639 | tig0018560:+11703 | Msa1367890:CDS |
| AATCTACAGGATAACCCATA+AGG | 0.452239 | tig0018560:-10877 | None:intergenic |
| AGAACGGGAGGTTTGTCGTT+AGG | 0.455603 | tig0018560:-10465 | None:intergenic |
| CTATAGCAAGCCTGCTGACT+GGG | 0.455984 | tig0018560:+13244 | Msa1367890:CDS |
| CTTGCACCCTTGACCACTGT+TGG | 0.457396 | tig0018560:+12145 | Msa1367890:CDS |
| TTGCCTGCCGCCCAGTTAGT+TGG | 0.460740 | tig0018560:+15523 | Msa1367890:three_prime_UTR |
| CCATGATATTCAAGCATTCA+AGG | 0.465143 | tig0018560:+10710 | Msa1367890:CDS |
| TATTCAAGCATTCAAGGAAC+AGG | 0.470870 | tig0018560:+10716 | Msa1367890:CDS |
| ACCACATCCAAAAGACCAAC+AGG | 0.471371 | tig0018560:-14185 | None:intergenic |
| CAAATAAATCTTCAGATGAA+TGG | 0.475342 | tig0018560:-12678 | None:intergenic |
| TCCTAGAGTAGACGAGTGAA+TGG | 0.481003 | tig0018560:-15632 | None:intergenic |
| CCTAATAATTTGCAAGTAGT+GGG | 0.481679 | tig0018560:+13296 | Msa1367890:CDS |
| GCTATAGCAAGCCTGCTGAC+TGG | 0.484632 | tig0018560:+13243 | Msa1367890:CDS |
| CCAGGCGGTTCTTGTTGGAA+TGG | 0.486124 | tig0018560:+14138 | Msa1367890:CDS |
| AGATAAAGGAACAGCGACAT+TGG | 0.487762 | tig0018560:+13586 | Msa1367890:CDS |
| CTTGCGATCAGTTGTTCGCC+AGG | 0.489624 | tig0018560:-10363 | None:intergenic |
| TTTCCAACTAACTGGGCGGC+AGG | 0.490634 | tig0018560:-15526 | None:intergenic |
| ATCTACAGGATAACCCATAA+GGG | 0.490649 | tig0018560:-10876 | None:intergenic |
| AGCTGTTGAACTAATAGAAA+AGG | 0.491306 | tig0018560:+12741 | Msa1367890:CDS |
| GGTGCAAAAGTAAAGCCATC+TGG | 0.492838 | tig0018560:-15387 | None:intergenic |
| CTAATACTTTGCAAACTCTC+CGG | 0.503430 | tig0018560:-12180 | None:intergenic |
| CCCTAATAATTTGCAAGTAG+TGG | 0.503908 | tig0018560:+13295 | Msa1367890:CDS |
| GAGATTTCCAACAGTGGTCA+AGG | 0.504165 | tig0018560:-12152 | None:intergenic |
| TTTCTTCTCCTTGGCGAGAA+CGG | 0.504371 | tig0018560:-10481 | None:intergenic |
| GATAAAGGAACAGCGACATT+GGG | 0.506305 | tig0018560:+13587 | Msa1367890:CDS |
| CTTCTAACGGATTGAAGGAA+AGG | 0.507476 | tig0018560:+10932 | Msa1367890:CDS |
| ATGCATAGCTCCTGTTAAGA+AGG | 0.509595 | tig0018560:+10386 | Msa1367890:CDS |
| CTTTGCAAACTCTCCGGAAA+GGG | 0.509906 | tig0018560:-12174 | None:intergenic |
| GTAGTAGTAGTAGTTCGATC+AGG | 0.516351 | tig0018560:-10426 | None:intergenic |
| CAGTTAGTTGGAAAATGCTC+AGG | 0.516976 | tig0018560:+15535 | Msa1367890:three_prime_UTR |
| TATTTGGTGTACAAATCTGT+GGG | 0.518175 | tig0018560:+12695 | Msa1367890:CDS |
| GGTAAGCCTTTATCTTCTAA+CGG | 0.521576 | tig0018560:+10919 | Msa1367890:CDS |
| AATAGGGTCAAGCTTCAGAA+TGG | 0.525188 | tig0018560:+12641 | Msa1367890:intron |
| AGTGTTGTAGAAGTAGCTTC+AGG | 0.527223 | tig0018560:+12868 | Msa1367890:CDS |
| GATGCCAAACTCAAAACTCT+TGG | 0.527301 | tig0018560:+11027 | Msa1367890:CDS |
| TGACCAGAGAATGCAAAAGT+TGG | 0.528228 | tig0018560:-15724 | None:intergenic |
| GCAGAAATTGGCTGATTTGG+AGG | 0.528457 | tig0018560:+10819 | Msa1367890:intron |
| GGACGCCAATTTATTCGTTG+TGG | 0.530603 | tig0018560:-14209 | None:intergenic |
| ACAACACTTTGCATGCGCAT+TGG | 0.530734 | tig0018560:-12853 | None:intergenic |
| TCAAGCATGTGGCAAGTTCA+GGG | 0.531108 | tig0018560:-13370 | None:intergenic |
| AGGTTTGTCGTTAGGAGCAG+AGG | 0.532676 | tig0018560:-10457 | None:intergenic |
| GGAATTAACATCACCTGACT+TGG | 0.533236 | tig0018560:-10658 | None:intergenic |
| TCCACCATCTTACTATGGGC+GGG | 0.533280 | tig0018560:+14229 | Msa1367890:CDS |
| TTCTCCTTGGCGAGAACGGG+AGG | 0.534154 | tig0018560:-10477 | None:intergenic |
| TTGTGCGGTTACATCTGAGT+TGG | 0.535905 | tig0018560:+11648 | Msa1367890:CDS |
| AACTTAGAATCTGAGTCAGC+AGG | 0.536668 | tig0018560:-11730 | None:intergenic |
| TTTATCTCTGTAAATATCCA+GGG | 0.542057 | tig0018560:-13570 | None:intergenic |
| AACTTTAATAAGTGCACCAC+GGG | 0.546118 | tig0018560:-13396 | None:intergenic |
| CGCAGAAAATTGTGAAGATG+AGG | 0.547997 | tig0018560:+11843 | Msa1367890:CDS |
| CATTGGGGTTCAGATACAAA+AGG | 0.548625 | tig0018560:+13669 | Msa1367890:CDS |
| TTATTTGGTGTACAAATCTG+TGG | 0.548788 | tig0018560:+12694 | Msa1367890:CDS |
| TACCCAGTCAGCTGCAGAGT+CGG | 0.552423 | tig0018560:-14276 | None:intergenic |
| ATAGCAAACTTTAGCTCTTG+GGG | 0.552673 | tig0018560:+13179 | Msa1367890:CDS |
| ATGGTGGTGATAAATGTGTT+TGG | 0.555686 | tig0018560:+11608 | Msa1367890:CDS |
| ATAGGGTCAAGCTTCAGAAT+GGG | 0.559018 | tig0018560:+12642 | Msa1367890:intron |
| AATTTGCAAGTAGTGGGGAA+TGG | 0.559807 | tig0018560:+13302 | Msa1367890:CDS |
| CACTACTTGCAAATTATTAG+GGG | 0.560194 | tig0018560:-13294 | None:intergenic |
| GGCGTCCACCATCTTACTAT+GGG | 0.561761 | tig0018560:+14225 | Msa1367890:CDS |
| AGCGAAAATGGAGGGTGGCG+AGG | 0.566641 | tig0018560:+10335 | None:intergenic |
| AGTGAATGGTTTAAAAGTGA+AGG | 0.568665 | tig0018560:-15618 | None:intergenic |
| AGATTTCATTGATATAAACA+TGG | 0.570150 | tig0018560:+12774 | Msa1367890:CDS |
| GCTAGTGCAGTGACAATACA+TGG | 0.572548 | tig0018560:+13203 | Msa1367890:CDS |
| GTCCACCATCTTACTATGGG+CGG | 0.574224 | tig0018560:+14228 | Msa1367890:CDS |
| GTAGTAGTTCGATCAGGAGG+AGG | 0.577704 | tig0018560:-10420 | None:intergenic |
| GAAGACGTTCACGTTTGAGT+TGG | 0.577856 | tig0018560:-10512 | None:intergenic |
| ATTTAGAGAGCGAAAATGGA+GGG | 0.578238 | tig0018560:+10327 | None:intergenic |
| ACCATTCACTCGTCTACTCT+AGG | 0.581144 | tig0018560:+15631 | Msa1367890:three_prime_UTR |
| GATGAGGAGACGGAAAATGA+AGG | 0.581481 | tig0018560:+11859 | Msa1367890:CDS |
| ATTGTTGTGAATAAGGGCGC+TGG | 0.582709 | tig0018560:+12811 | Msa1367890:CDS |
| TATACGTAATCCCAGTCAGC+AGG | 0.583058 | tig0018560:-13254 | None:intergenic |
| ATTACGTATATCAGTGTACC+AGG | 0.583452 | tig0018560:+13267 | Msa1367890:CDS |
| TTATTCAGAATAAGTCAAAA+GGG | 0.583832 | tig0018560:+11566 | Msa1367890:intron |
| ATAAGATCTGAATCAGAGGC+AGG | 0.586531 | tig0018560:+12034 | Msa1367890:CDS |
| GTAGTAGTAGTTCGATCAGG+AGG | 0.586855 | tig0018560:-10423 | None:intergenic |
| ACTTGGCAATGTTTGGACAA+AGG | 0.587871 | tig0018560:-10641 | None:intergenic |
| GTGCAGTGACAATACATGGC+AGG | 0.591689 | tig0018560:+13207 | Msa1367890:CDS |
| TCATCCCGCCCATAGTAAGA+TGG | 0.591793 | tig0018560:-14233 | None:intergenic |
| TTACTTGGCAAAGTTCCAGA+TGG | 0.593149 | tig0018560:+15372 | Msa1367890:CDS |
| GGGCACATCCAGATACTGTA+GGG | 0.597587 | tig0018560:+12716 | Msa1367890:CDS |
| AAATTGTGAAGATGAGGAGA+CGG | 0.597649 | tig0018560:+11849 | Msa1367890:CDS |
| CCATTCCAACAAGAACCGCC+TGG | 0.597793 | tig0018560:-14138 | None:intergenic |
| CCAGTCAGCTGCAGAGTCGG+AGG | 0.597833 | tig0018560:-14273 | None:intergenic |
| GATTTCATTGATATAAACAT+GGG | 0.598109 | tig0018560:+12775 | Msa1367890:CDS |
| CAGAAATTGGCTGATTTGGA+GGG | 0.598151 | tig0018560:+10820 | Msa1367890:intron |
| GCCACATGCTTGATTGCCCG+TGG | 0.599335 | tig0018560:+13380 | Msa1367890:CDS |
| GGGGCACATCCAGATACTGT+AGG | 0.600909 | tig0018560:+12715 | Msa1367890:CDS |
| ACTTTGCAAACTCTCCGGAA+AGG | 0.609314 | tig0018560:-12175 | None:intergenic |
| CAAACCTCCCGTTCTCGCCA+AGG | 0.612861 | tig0018560:+10473 | Msa1367890:CDS |
| CGCCATCAGTCTGATGATGA+CGG | 0.614570 | tig0018560:+11694 | Msa1367890:CDS |
| CAAGCTTAGATCAGTTTCTG+GGG | 0.615452 | tig0018560:-12071 | None:intergenic |
| GATGTTATAAAAGATGATGA+TGG | 0.618144 | tig0018560:+11766 | Msa1367890:CDS |
| CGGAGGCCATCAGTGTCTCA+AGG | 0.618970 | tig0018560:-14256 | None:intergenic |
| TGATGATGACGGCTCTTGTG+GGG | 0.619036 | tig0018560:+11705 | Msa1367890:CDS |
| AGATTTCCAACAGTGGTCAA+GGG | 0.619386 | tig0018560:-12151 | None:intergenic |
| TTCGATCAGGAGGAGGACGA+AGG | 0.622030 | tig0018560:-10413 | None:intergenic |
| CTGCATAAGATCTGAATCAG+AGG | 0.625016 | tig0018560:+12030 | Msa1367890:CDS |
| TGACAATACATGGCAGGTCA+CGG | 0.625204 | tig0018560:+13213 | Msa1367890:CDS |
| CATTTAGAGAGCGAAAATGG+AGG | 0.626167 | tig0018560:+10326 | None:intergenic |
| TCCCGCCCATAGTAAGATGG+TGG | 0.627157 | tig0018560:-14230 | None:intergenic |
| AGCCGTCATCATCAGACTGA+TGG | 0.627690 | tig0018560:-11696 | None:intergenic |
| ACTTGTAGGTACATACCTGT+TGG | 0.629119 | tig0018560:+14170 | Msa1367890:CDS |
| GGATGACCTTGAGACACTGA+TGG | 0.629574 | tig0018560:+14250 | Msa1367890:CDS |
| GAGTGTTGATGACCAAATTG+TGG | 0.636784 | tig0018560:+12000 | Msa1367890:CDS |
| CTAATAATTTGCAAGTAGTG+GGG | 0.639061 | tig0018560:+13297 | Msa1367890:CDS |
| ACCACGGGCAATCAAGCATG+TGG | 0.640032 | tig0018560:-13381 | None:intergenic |
| TGATGACAATGGTTCTTGTG+CGG | 0.659310 | tig0018560:+11633 | Msa1367890:CDS |
| ATTTGGTGTACAAATCTGTG+GGG | 0.684676 | tig0018560:+12696 | Msa1367890:CDS |
| TGTGTTTGGTCTGATGACAA+TGG | 0.694284 | tig0018560:+11622 | Msa1367890:CDS |
| GTTGATGACCAAATTGTGGA+CGG | 0.696468 | tig0018560:+12004 | Msa1367890:CDS |
| GAGTTGGAAAACAAAGACGA+TGG | 0.697495 | tig0018560:+11664 | Msa1367890:CDS |
| TAGAGAGCGAAAATGGAGGG+TGG | 0.698133 | tig0018560:+10330 | None:intergenic |
| GAAAGGGAGATTTCCAACAG+TGG | 0.699664 | tig0018560:-12158 | None:intergenic |
| TAACTTTAATAAGTGCACCA+CGG | 0.702021 | tig0018560:-13397 | None:intergenic |
| TTAGGAGCTGAAATAACATG+CGG | 0.710264 | tig0018560:+12199 | Msa1367890:CDS |
| TAGGGGTGGAGACTACCAGG+CGG | 0.796234 | tig0018560:+14123 | Msa1367890:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTATTAATTTACAA+GGG | + | tig0018560:10772-10791 | Msa1367890:intron | 10.0% |
| !!! | ATCGATTAATTTTTTTAAAA+TGG | + | tig0018560:14915-14934 | Msa1367890:intron | 10.0% |
| !!! | TAAAATCTTAATTTTATACA+AGG | - | tig0018560:15011-15030 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTTTTTTTTTG+AGG | + | tig0018560:15205-15224 | Msa1367890:intron | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTGA+GGG | + | tig0018560:15206-15225 | Msa1367890:intron | 10.0% |
| !!! | ACTCTAAAAATAATAATTAT+TGG | - | tig0018560:15700-15719 | None:intergenic | 10.0% |
| !! | CAATTGTTTATTAATTTACA+AGG | + | tig0018560:10771-10790 | Msa1367890:intron | 15.0% |
| !! | ATTGTTTATTAATTTACAAG+GGG | + | tig0018560:10773-10792 | Msa1367890:intron | 15.0% |
| !!! | GTGTGTTTTTAATTTTAATA+TGG | + | tig0018560:11474-11493 | Msa1367890:intron | 15.0% |
| !!! | ATAATTTTGCTTTTGTAATA+GGG | + | tig0018560:12625-12644 | Msa1367890:intron | 15.0% |
| !!! | ATACAAAAGGTATATTTTAT+TGG | + | tig0018560:13682-13701 | Msa1367890:intron | 15.0% |
| !! | AATCTAATATTATAATATCC+TGG | + | tig0018560:15294-15313 | Msa1367890:intron | 15.0% |
| !! | GCTATTTATATAGAAAAGAA+GGG | - | tig0018560:10547-10566 | None:intergenic | 20.0% |
| !! | AGCTATTTATATAGAAAAGA+AGG | - | tig0018560:10548-10567 | None:intergenic | 20.0% |
| !! | TTGTTTATTAATTTACAAGG+GGG | + | tig0018560:10774-10793 | Msa1367890:intron | 20.0% |
| !! | ATGTGTATTTAAAAATCTAC+AGG | - | tig0018560:10893-10912 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATACACATCAAG+AGG | + | tig0018560:10897-10916 | Msa1367890:CDS | 20.0% |
| !!! | TTTTTAAATACACATCAAGA+GGG | + | tig0018560:10898-10917 | Msa1367890:CDS | 20.0% |
| !! | TTTCATAGCAATTATGAATT+CGG | - | tig0018560:11117-11136 | None:intergenic | 20.0% |
| !! | AATTTGAGCAATGATAATAA+AGG | - | tig0018560:11441-11460 | None:intergenic | 20.0% |
| !! | AATTAAAACTGAGTTCTTAA+AGG | - | tig0018560:11520-11539 | None:intergenic | 20.0% |
| !! | ATTATTCAGAATAAGTCAAA+AGG | + | tig0018560:11565-11584 | Msa1367890:intron | 20.0% |
| !! | TTATTCAGAATAAGTCAAAA+GGG | + | tig0018560:11566-11585 | Msa1367890:intron | 20.0% |
| !!! | TATATTTTGATACCAATTTC+AGG | + | tig0018560:12331-12350 | Msa1367890:intron | 20.0% |
| !!! | ACTTGATAAATTCATTTTAG+GGG | - | tig0018560:12390-12409 | None:intergenic | 20.0% |
| !!! | CACTTGATAAATTCATTTTA+GGG | - | tig0018560:12391-12410 | None:intergenic | 20.0% |
| !!! | TCACTTGATAAATTCATTTT+AGG | - | tig0018560:12392-12411 | None:intergenic | 20.0% |
| !!! | AATTATTGGTTCCTATATTA+AGG | - | tig0018560:12449-12468 | None:intergenic | 20.0% |
| !!! | CATAATTTTGCTTTTGTAAT+AGG | + | tig0018560:12624-12643 | Msa1367890:intron | 20.0% |
| !! | AGATTTCATTGATATAAACA+TGG | + | tig0018560:12774-12793 | Msa1367890:CDS | 20.0% |
| !! | GATTTCATTGATATAAACAT+GGG | + | tig0018560:12775-12794 | Msa1367890:CDS | 20.0% |
| !!! | TATATTATATGCTGTGTTTT+AGG | + | tig0018560:14104-14123 | Msa1367890:intron | 20.0% |
| !!! | ATATTATATGCTGTGTTTTA+GGG | + | tig0018560:14105-14124 | Msa1367890:intron | 20.0% |
| !!! | TAGAAAAGTTGATAGAAAAT+AGG | - | tig0018560:14636-14655 | None:intergenic | 20.0% |
| !! | AAATATAATGAATAAGTGTC+AGG | - | tig0018560:14978-14997 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGAGGGAA+AGG | + | tig0018560:15211-15230 | Msa1367890:intron | 20.0% |
| ! | TGTTTATTAATTTACAAGGG+GGG | + | tig0018560:10775-10794 | Msa1367890:intron | 25.0% |
| ! | ATTATTCATCATTATGCTAC+TGG | + | tig0018560:11351-11370 | Msa1367890:intron | 25.0% |
| !! | AATAATGATCGATTCAAATG+TGG | - | tig0018560:11551-11570 | None:intergenic | 25.0% |
| ! | GATGTTATAAAAGATGATGA+TGG | + | tig0018560:11766-11785 | Msa1367890:CDS | 25.0% |
| !!! | AAAAGAAGCTTATTGATTTC+AGG | + | tig0018560:12110-12129 | Msa1367890:CDS | 25.0% |
| !!! | AAAGAAGCTTATTGATTTCA+GGG | + | tig0018560:12111-12130 | Msa1367890:CDS | 25.0% |
| !!! | AAAATTTTTCAAAACTCTGC+TGG | + | tig0018560:12476-12495 | Msa1367890:intron | 25.0% |
| !!! | AAATTTTTCAAAACTCTGCT+GGG | + | tig0018560:12477-12496 | Msa1367890:intron | 25.0% |
| ! | CAAATAAATCTTCAGATGAA+TGG | - | tig0018560:12681-12700 | None:intergenic | 25.0% |
| ! | CATTCATCTGAAGATTTATT+TGG | + | tig0018560:12679-12698 | Msa1367890:CDS | 25.0% |
| ! | TATTCACAACAATGTCAATA+GGG | - | tig0018560:12804-12823 | None:intergenic | 25.0% |
| ! | TTATTCACAACAATGTCAAT+AGG | - | tig0018560:12805-12824 | None:intergenic | 25.0% |
| ! | TATTGACATTGTTGTGAATA+AGG | + | tig0018560:12804-12823 | Msa1367890:CDS | 25.0% |
| ! | ATTGACATTGTTGTGAATAA+GGG | + | tig0018560:12805-12824 | Msa1367890:CDS | 25.0% |
| ! | GAAAATACCTTTATAGTTAC+TGG | - | tig0018560:12907-12926 | None:intergenic | 25.0% |
| ! | ATATCTTAAGCAAGCATATT+GGG | - | tig0018560:13087-13106 | None:intergenic | 25.0% |
| ! | ACCTAATGCAATAGATAAAT+GGG | - | tig0018560:13116-13135 | None:intergenic | 25.0% |
| ! | TACCTAATGCAATAGATAAA+TGG | - | tig0018560:13117-13136 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTCATTTGTAGAC+TGG | + | tig0018560:13327-13346 | Msa1367890:CDS | 25.0% |
| ! | TTTATCTCTGTAAATATCCA+GGG | - | tig0018560:13573-13592 | None:intergenic | 25.0% |
| !! | TTCAAAGATTTTGTGCATTT+TGG | + | tig0018560:13639-13658 | Msa1367890:CDS | 25.0% |
| !!! | CTGTTTAGTGTTTTTTTTTG+AGG | - | tig0018560:13797-13816 | None:intergenic | 25.0% |
| !!! | AAATTTGTTGCATCTACTTA+AGG | - | tig0018560:13858-13877 | None:intergenic | 25.0% |
| ! | TTAAGTAGATGCAACAAATT+TGG | + | tig0018560:13857-13876 | Msa1367890:intron | 25.0% |
| ! | AAACATTGATGAGTGTATAA+GGG | + | tig0018560:13913-13932 | Msa1367890:intron | 25.0% |
| ! | CTACATATGTAAAAGATTGA+AGG | - | tig0018560:14011-14030 | None:intergenic | 25.0% |
| !!! | TATTATATGCTGTGTTTTAG+GGG | + | tig0018560:14106-14125 | Msa1367890:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | tig0018560:14454-14473 | Msa1367890:intron | 25.0% |
| !! | TCTATCAACTTTTCTACTAT+AGG | + | tig0018560:14640-14659 | Msa1367890:intron | 25.0% |
| !!! | ATCTTCATTTTGAGAAGAAA+GGG | - | tig0018560:15091-15110 | None:intergenic | 25.0% |
| !!! | AATCTTCATTTTGAGAAGAA+AGG | - | tig0018560:15092-15111 | None:intergenic | 25.0% |
| !! | AAAGAATCGTTTAAGAGTAT+GGG | - | tig0018560:15321-15340 | None:intergenic | 25.0% |
| ! | AAAAGAATCGTTTAAGAGTA+TGG | - | tig0018560:15322-15341 | None:intergenic | 25.0% |
| !! | CGATTCTTTTTATTATACAC+AGG | + | tig0018560:15332-15351 | Msa1367890:intron | 25.0% |
| !! | TAAGCATTTGATTTATGCTT+TGG | - | tig0018560:15411-15430 | None:intergenic | 25.0% |
| !!! | CTTTGTTTTGTTATTTGGAA+GGG | + | tig0018560:15581-15600 | Msa1367890:three_prime_UTR | 25.0% |
| ! | AAACGACAGTTTTCTTGATA+AGG | - | tig0018560:10687-10706 | None:intergenic | 30.0% |
| TTCAATCCGTTAGAAGATAA+AGG | - | tig0018560:10928-10947 | None:intergenic | 30.0% | |
| !! | TTTATCTTCTAACGGATTGA+AGG | + | tig0018560:10927-10946 | Msa1367890:CDS | 30.0% |
| ! | AAGATGTTCAGAAGCTTTTA+TGG | + | tig0018560:10977-10996 | Msa1367890:CDS | 30.0% |
| TTCATGACACTTTACATCAA+AGG | - | tig0018560:11241-11260 | None:intergenic | 30.0% | |
| ATGAATAATTACAAGCGCAT+TGG | - | tig0018560:11340-11359 | None:intergenic | 30.0% | |
| TAATAAAGGAACACTGACAA+AGG | - | tig0018560:11427-11446 | None:intergenic | 30.0% | |
| ! | TGCGGTTTTTCTTTTCTTTT+GGG | - | tig0018560:11827-11846 | None:intergenic | 30.0% |
| ACTTTAGTGCTTATAGTCTA+TGG | + | tig0018560:11899-11918 | Msa1367890:intron | 30.0% | |
| TCAACTAGAATTGAATGCAA+AGG | - | tig0018560:11951-11970 | None:intergenic | 30.0% | |
| ATCCTGAGTATGATGTATAT+AGG | + | tig0018560:12288-12307 | Msa1367890:intron | 30.0% | |
| TCCTGAGTATGATGTATATA+GGG | + | tig0018560:12289-12308 | Msa1367890:intron | 30.0% | |
| AGACAAATACCAAACTATGT+GGG | - | tig0018560:12362-12381 | None:intergenic | 30.0% | |
| AAGACAAATACCAAACTATG+TGG | - | tig0018560:12363-12382 | None:intergenic | 30.0% | |
| GAACGTTGAAACCTTAATAT+AGG | + | tig0018560:12435-12454 | Msa1367890:intron | 30.0% | |
| GCAAAAGAAAAGAAAAGATG+AGG | - | tig0018560:12562-12581 | None:intergenic | 30.0% | |
| !! | TTATTTGGTGTACAAATCTG+TGG | + | tig0018560:12694-12713 | Msa1367890:CDS | 30.0% |
| !! | TATTTGGTGTACAAATCTGT+GGG | + | tig0018560:12695-12714 | Msa1367890:CDS | 30.0% |
| AGCTGTTGAACTAATAGAAA+AGG | + | tig0018560:12741-12760 | Msa1367890:CDS | 30.0% | |
| CGATATTCCAGTAACTATAA+AGG | + | tig0018560:12897-12916 | Msa1367890:CDS | 30.0% | |
| GGACACAATGAAATTTGTAT+CGG | + | tig0018560:12946-12965 | Msa1367890:intron | 30.0% | |
| !!! | GCTAACAAGATTTTTTTTCC+TGG | - | tig0018560:13053-13072 | None:intergenic | 30.0% |
| TATCTTAAGCAAGCATATTG+GGG | - | tig0018560:13086-13105 | None:intergenic | 30.0% | |
| CATATCTTAAGCAAGCATAT+TGG | - | tig0018560:13088-13107 | None:intergenic | 30.0% | |
| ACCCATTTATCTATTGCATT+AGG | + | tig0018560:13112-13131 | Msa1367890:intron | 30.0% | |
| !!! | TACGTACAGCTTATTTTGAA+GGG | + | tig0018560:13135-13154 | Msa1367890:CDS | 30.0% |
| CACTACTTGCAAATTATTAG+GGG | - | tig0018560:13297-13316 | None:intergenic | 30.0% | |
| CCACTACTTGCAAATTATTA+GGG | - | tig0018560:13298-13317 | None:intergenic | 30.0% | |
| ! | CCTAATAATTTGCAAGTAGT+GGG | + | tig0018560:13296-13315 | Msa1367890:CDS | 30.0% |
| ! | CTAATAATTTGCAAGTAGTG+GGG | + | tig0018560:13297-13316 | Msa1367890:CDS | 30.0% |
| TAACTTTAATAAGTGCACCA+CGG | - | tig0018560:13400-13419 | None:intergenic | 30.0% | |
| TAAAGTTAGTATTATCGCCT+TGG | + | tig0018560:13412-13431 | Msa1367890:intron | 30.0% | |
| CTTTATCTCTGTAAATATCC+AGG | - | tig0018560:13574-13593 | None:intergenic | 30.0% | |
| CTGGATATTTACAGAGATAA+AGG | + | tig0018560:13572-13591 | Msa1367890:CDS | 30.0% | |
| !!! | GTATATTTTATTGGTGCTGA+TGG | + | tig0018560:13691-13710 | Msa1367890:intron | 30.0% |
| CATCAATGTTTCGTATTCTT+TGG | - | tig0018560:13904-13923 | None:intergenic | 30.0% | |
| GAAACATTGATGAGTGTATA+AGG | + | tig0018560:13912-13931 | Msa1367890:intron | 30.0% | |
| AACATTGATGAGTGTATAAG+GGG | + | tig0018560:13914-13933 | Msa1367890:intron | 30.0% | |
| !! | TTCATGTTGTTTCTAGCAAA+TGG | - | tig0018560:14041-14060 | None:intergenic | 30.0% |
| TTAAACATGCTCAAGAAAAC+CGG | - | tig0018560:14320-14339 | None:intergenic | 30.0% | |
| ! | CATGTTTAAATCGTGTGTTT+TGG | + | tig0018560:14331-14350 | Msa1367890:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+CGG | - | tig0018560:14450-14469 | None:intergenic | 30.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | tig0018560:14494-14513 | None:intergenic | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | - | tig0018560:14503-14522 | None:intergenic | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | + | tig0018560:14501-14520 | Msa1367890:intron | 30.0% | |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | + | tig0018560:14511-14530 | Msa1367890:intron | 30.0% |
| TGTTAGAAGAGTAGATCAAA+TGG | - | tig0018560:14569-14588 | None:intergenic | 30.0% | |
| TTGATCTACTCTTCTAACAA+CGG | + | tig0018560:14570-14589 | Msa1367890:intron | 30.0% | |
| TGATAGAAAATAGGCTTAGA+TGG | - | tig0018560:14627-14646 | None:intergenic | 30.0% | |
| ! | AAAGTATCACTTAAGCTGAA+AGG | - | tig0018560:14822-14841 | None:intergenic | 30.0% |
| ! | ATTTTCATCGTATTCAAGCT+GGG | - | tig0018560:14887-14906 | None:intergenic | 30.0% |
| ! | TATTTTCATCGTATTCAAGC+TGG | - | tig0018560:14888-14907 | None:intergenic | 30.0% |
| TTGCATGAAAAGAGAAGAAA+GGG | - | tig0018560:15118-15137 | None:intergenic | 30.0% | |
| TTTGCATGAAAAGAGAAGAA+AGG | - | tig0018560:15119-15138 | None:intergenic | 30.0% | |
| TTCTGTTGTCTTTGAATAGA+GGG | - | tig0018560:15143-15162 | None:intergenic | 30.0% | |
| TTTCTGTTGTCTTTGAATAG+AGG | - | tig0018560:15144-15163 | None:intergenic | 30.0% | |
| AGAAAATAGTTGTGTTCAAC+AGG | + | tig0018560:15159-15178 | Msa1367890:intron | 30.0% | |
| !!! | TGTCGCTTTGTTTTGTTATT+TGG | + | tig0018560:15576-15595 | Msa1367890:three_prime_UTR | 30.0% |
| !!! | GCTTTGTTTTGTTATTTGGA+AGG | + | tig0018560:15580-15599 | Msa1367890:three_prime_UTR | 30.0% |
| AGTGAATGGTTTAAAAGTGA+AGG | - | tig0018560:15621-15640 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCTTGATAAGGAC+AGG | - | tig0018560:10682-10701 | None:intergenic | 35.0% |
| CCTTGAATGCTTGAATATCA+TGG | - | tig0018560:10713-10732 | None:intergenic | 35.0% | |
| CCATGATATTCAAGCATTCA+AGG | + | tig0018560:10710-10729 | Msa1367890:CDS | 35.0% | |
| TATTCAAGCATTCAAGGAAC+AGG | + | tig0018560:10716-10735 | Msa1367890:CDS | 35.0% | |
| ! | TAATTTACAAGGGGGGTTTT+TGG | + | tig0018560:10782-10801 | Msa1367890:intron | 35.0% |
| !!! | TGTCCTTTTCTGAAATCTGA+AGG | + | tig0018560:10847-10866 | Msa1367890:CDS | 35.0% |
| !!! | GTCCTTTTCTGAAATCTGAA+GGG | + | tig0018560:10848-10867 | Msa1367890:CDS | 35.0% |
| !!! | TCCTTTTCTGAAATCTGAAG+GGG | + | tig0018560:10849-10868 | Msa1367890:CDS | 35.0% |
| ATCTACAGGATAACCCATAA+GGG | - | tig0018560:10879-10898 | None:intergenic | 35.0% | |
| AATCTACAGGATAACCCATA+AGG | - | tig0018560:10880-10899 | None:intergenic | 35.0% | |
| GGTAAGCCTTTATCTTCTAA+CGG | + | tig0018560:10919-10938 | Msa1367890:CDS | 35.0% | |
| ! | AAGGAAAGGTGTGAAGTTAA+TGG | + | tig0018560:10946-10965 | Msa1367890:CDS | 35.0% |
| ! | TTGAGTTTGGCATCAGTTTT+GGG | - | tig0018560:11021-11040 | None:intergenic | 35.0% |
| !! | TTTGAGTTTGGCATCAGTTT+TGG | - | tig0018560:11022-11041 | None:intergenic | 35.0% |
| AGGCATAACATGAACAACAA+CGG | - | tig0018560:11081-11100 | None:intergenic | 35.0% | |
| ! | TAGCAATTATGAATTCGGTG+AGG | - | tig0018560:11112-11131 | None:intergenic | 35.0% |
| ! | TGTAAAGTGTCATGAAGTGT+CGG | + | tig0018560:11245-11264 | Msa1367890:intron | 35.0% |
| ! | TTTCTAGTGTACTACTAGGT+AGG | - | tig0018560:11313-11332 | None:intergenic | 35.0% |
| ! | CATCTTTCTAGTGTACTACT+AGG | - | tig0018560:11317-11336 | None:intergenic | 35.0% |
| AATGCCGTCAAAAACAAAGA+TGG | + | tig0018560:11589-11608 | Msa1367890:CDS | 35.0% | |
| !!! | ACCACCATCTTTGTTTTTGA+CGG | - | tig0018560:11596-11615 | None:intergenic | 35.0% |
| ! | ATGGTGGTGATAAATGTGTT+TGG | + | tig0018560:11608-11627 | Msa1367890:CDS | 35.0% |
| !! | TTTCTTTTCTTTTGGGGACA+AGG | - | tig0018560:11820-11839 | None:intergenic | 35.0% |
| ! | GCGGTTTTTCTTTTCTTTTG+GGG | - | tig0018560:11826-11845 | None:intergenic | 35.0% |
| ! | CTGCGGTTTTTCTTTTCTTT+TGG | - | tig0018560:11828-11847 | None:intergenic | 35.0% |
| ! | CTCATCTTCACAATTTTCTG+CGG | - | tig0018560:11845-11864 | None:intergenic | 35.0% |
| AAATTGTGAAGATGAGGAGA+CGG | + | tig0018560:11849-11868 | Msa1367890:CDS | 35.0% | |
| TAGCTTCATATTGCTGAAAC+AGG | + | tig0018560:11974-11993 | Msa1367890:intron | 35.0% | |
| TCAAGCTTAGATCAGTTTCT+GGG | - | tig0018560:12075-12094 | None:intergenic | 35.0% | |
| TTCAAGCTTAGATCAGTTTC+TGG | - | tig0018560:12076-12095 | None:intergenic | 35.0% | |
| CTAATACTTTGCAAACTCTC+CGG | - | tig0018560:12183-12202 | None:intergenic | 35.0% | |
| TTAGGAGCTGAAATAACATG+CGG | + | tig0018560:12199-12218 | Msa1367890:CDS | 35.0% | |
| TGAAATAACATGCGGTGAAA+TGG | + | tig0018560:12207-12226 | Msa1367890:CDS | 35.0% | |
| ! | AATGTGCACAAATCTTTTGG+AGG | + | tig0018560:12231-12250 | Msa1367890:CDS | 35.0% |
| TCCCTATATACATCATACTC+AGG | - | tig0018560:12293-12312 | None:intergenic | 35.0% | |
| TGAGATAGTATATCCTCCAT+AGG | + | tig0018560:12409-12428 | Msa1367890:intron | 35.0% | |
| CAGAACAAAACAAAGAGGAT+GGG | - | tig0018560:12528-12547 | None:intergenic | 35.0% | |
| TTGTGCAGAACAAAACAAAG+AGG | - | tig0018560:12533-12552 | None:intergenic | 35.0% | |
| !! | ATTTGGTGTACAAATCTGTG+GGG | + | tig0018560:12696-12715 | Msa1367890:CDS | 35.0% |
| TCCATGCTAAATGCAACAAT+AGG | + | tig0018560:12925-12944 | Msa1367890:intron | 35.0% | |
| TCCTATTGTTGCATTTAGCA+TGG | - | tig0018560:12929-12948 | None:intergenic | 35.0% | |
| ! | CTTGATAGCTTCTTATGTTC+TGG | + | tig0018560:12983-13002 | Msa1367890:intron | 35.0% |
| CTGGAAAACGTAAAAAGACT+TGG | - | tig0018560:13034-13053 | None:intergenic | 35.0% | |
| ! | CAAGTCTTTTTACGTTTTCC+AGG | + | tig0018560:13032-13051 | Msa1367890:intron | 35.0% |
| !!! | GTACGTACAGCTTATTTTGA+AGG | + | tig0018560:13134-13153 | Msa1367890:CDS | 35.0% |
| !! | TGATAGCAAACTTTAGCTCT+TGG | + | tig0018560:13177-13196 | Msa1367890:CDS | 35.0% |
| !! | GATAGCAAACTTTAGCTCTT+GGG | + | tig0018560:13178-13197 | Msa1367890:CDS | 35.0% |
| !! | ATAGCAAACTTTAGCTCTTG+GGG | + | tig0018560:13179-13198 | Msa1367890:CDS | 35.0% |
| ATTACGTATATCAGTGTACC+AGG | + | tig0018560:13267-13286 | Msa1367890:CDS | 35.0% | |
| ! | CCCTAATAATTTGCAAGTAG+TGG | + | tig0018560:13295-13314 | Msa1367890:CDS | 35.0% |
| CCCACTACTTGCAAATTATT+AGG | - | tig0018560:13299-13318 | None:intergenic | 35.0% | |
| AACTTTAATAAGTGCACCAC+GGG | - | tig0018560:13399-13418 | None:intergenic | 35.0% | |
| CATAAAATGAGATTGAGCCA+AGG | - | tig0018560:13432-13451 | None:intergenic | 35.0% | |
| ! | CTTGGCTCAATCTCATTTTA+TGG | + | tig0018560:13430-13449 | Msa1367890:intron | 35.0% |
| TAATGCTAGTTGTCTTCATC+AGG | + | tig0018560:13476-13495 | Msa1367890:intron | 35.0% | |
| !! | TGCATTTTGGTCTTCAACAT+TGG | + | tig0018560:13652-13671 | Msa1367890:CDS | 35.0% |
| !! | GCATTTTGGTCTTCAACATT+GGG | + | tig0018560:13653-13672 | Msa1367890:CDS | 35.0% |
| !! | CATTTTGGTCTTCAACATTG+GGG | + | tig0018560:13654-13673 | Msa1367890:CDS | 35.0% |
| ACTTAAGGATCGTTCATTCT+TGG | - | tig0018560:13843-13862 | None:intergenic | 35.0% | |
| TGGACTAAGCATGTAATTTG+TGG | + | tig0018560:13942-13961 | Msa1367890:intron | 35.0% | |
| ! | GGACTAAGCATGTAATTTGT+GGG | + | tig0018560:13943-13962 | Msa1367890:intron | 35.0% |
| TGGTTCCACAACGAATAAAT+TGG | + | tig0018560:14204-14223 | Msa1367890:CDS | 35.0% | |
| !! | ATGCAATTCCCTTTTGTTTC+CGG | + | tig0018560:14298-14317 | Msa1367890:intron | 35.0% |
| CAAGAAAACCGGAAACAAAA+GGG | - | tig0018560:14309-14328 | None:intergenic | 35.0% | |
| TCAAGAAAACCGGAAACAAA+AGG | - | tig0018560:14310-14329 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | tig0018560:14470-14489 | None:intergenic | 35.0% |
| GACCTCTAAATCCTTTCTAA+TGG | + | tig0018560:14489-14508 | Msa1367890:intron | 35.0% | |
| TAGAAGAGTAGATCAAATGG+AGG | - | tig0018560:14566-14585 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | tig0018560:14622-14641 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | - | tig0018560:14809-14828 | None:intergenic | 35.0% | |
| CGATTATCAGAGATGTTACT+TGG | + | tig0018560:15357-15376 | Msa1367890:CDS | 35.0% | |
| GAGCTGAAAATGGTTAATTC+TGG | + | tig0018560:15436-15455 | Msa1367890:exon | 35.0% | |
| ! | TGAGCATTTTCCAACTAACT+GGG | - | tig0018560:15536-15555 | None:intergenic | 35.0% |
| ATGCATAGCTCCTGTTAAGA+AGG | + | tig0018560:10386-10405 | Msa1367890:CDS | 40.0% | |
| GTAGTAGTAGTAGTTCGATC+AGG | - | tig0018560:10429-10448 | None:intergenic | 40.0% | |
| GCGTTTAGATTTCTTCTCCT+TGG | - | tig0018560:10493-10512 | None:intergenic | 40.0% | |
| TCACTCTGTATGTATTCTGC+AGG | + | tig0018560:10599-10618 | Msa1367890:intron | 40.0% | |
| ACTTGGCAATGTTTGGACAA+AGG | - | tig0018560:10644-10663 | None:intergenic | 40.0% | |
| GGAATTAACATCACCTGACT+TGG | - | tig0018560:10661-10680 | None:intergenic | 40.0% | |
| TCGATGATGAGTGCAGAAAT+TGG | + | tig0018560:10807-10826 | Msa1367890:intron | 40.0% | |
| AGTGCAGAAATTGGCTGATT+TGG | + | tig0018560:10816-10835 | Msa1367890:intron | 40.0% | |
| !! | CAGAAATTGGCTGATTTGGA+GGG | + | tig0018560:10820-10839 | Msa1367890:intron | 40.0% |
| !! | CTTCTAACGGATTGAAGGAA+AGG | + | tig0018560:10932-10951 | Msa1367890:CDS | 40.0% |
| ! | TGAGTTTGGCATCAGTTTTG+GGG | - | tig0018560:11020-11039 | None:intergenic | 40.0% |
| GATGCCAAACTCAAAACTCT+TGG | + | tig0018560:11027-11046 | Msa1367890:CDS | 40.0% | |
| !!! | GAGACCAAGAGTTTTGAGTT+TGG | - | tig0018560:11034-11053 | None:intergenic | 40.0% |
| ACTCAAAACTCTTGGTCTCT+TGG | + | tig0018560:11035-11054 | Msa1367890:CDS | 40.0% | |
| GGCATAACATGAACAACAAC+GGG | - | tig0018560:11080-11099 | None:intergenic | 40.0% | |
| ! | AATTCGGTGAGGAAAATGAG+AGG | - | tig0018560:11101-11120 | None:intergenic | 40.0% |
| ! | CTTTACATCAAAGGCATGTC+TGG | - | tig0018560:11232-11251 | None:intergenic | 40.0% |
| TGTGTTTGGTCTGATGACAA+TGG | + | tig0018560:11622-11641 | Msa1367890:CDS | 40.0% | |
| TGATGACAATGGTTCTTGTG+CGG | + | tig0018560:11633-11652 | Msa1367890:CDS | 40.0% | |
| GAGTTGGAAAACAAAGACGA+TGG | + | tig0018560:11664-11683 | Msa1367890:CDS | 40.0% | |
| AACTTAGAATCTGAGTCAGC+AGG | - | tig0018560:11733-11752 | None:intergenic | 40.0% | |
| !! | TTTTGGGGACAAGGTATATC+AGG | - | tig0018560:11811-11830 | None:intergenic | 40.0% |
| CGCAGAAAATTGTGAAGATG+AGG | + | tig0018560:11843-11862 | Msa1367890:CDS | 40.0% | |
| !! | GAGTGTTGATGACCAAATTG+TGG | + | tig0018560:12000-12019 | Msa1367890:CDS | 40.0% |
| !! | GTTGATGACCAAATTGTGGA+CGG | + | tig0018560:12004-12023 | Msa1367890:CDS | 40.0% |
| CTGCATAAGATCTGAATCAG+AGG | + | tig0018560:12030-12049 | Msa1367890:CDS | 40.0% | |
| ATAAGATCTGAATCAGAGGC+AGG | + | tig0018560:12034-12053 | Msa1367890:CDS | 40.0% | |
| CAAGCTTAGATCAGTTTCTG+GGG | - | tig0018560:12074-12093 | None:intergenic | 40.0% | |
| AGATTTCCAACAGTGGTCAA+GGG | - | tig0018560:12154-12173 | None:intergenic | 40.0% | |
| ! | CGGAGAGTTTGCAAAGTATT+AGG | + | tig0018560:12181-12200 | Msa1367890:CDS | 40.0% |
| ! | GGCAATGTGCACAAATCTTT+TGG | + | tig0018560:12228-12247 | Msa1367890:CDS | 40.0% |
| ATGTGGGAATTGCCTGAAAT+TGG | - | tig0018560:12346-12365 | None:intergenic | 40.0% | |
| TTCAACGTTCAAACCTATGG+AGG | - | tig0018560:12425-12444 | None:intergenic | 40.0% | |
| GGTTTCAACGTTCAAACCTA+TGG | - | tig0018560:12428-12447 | None:intergenic | 40.0% | |
| AAAACAAAGAGGATGGGAGA+AGG | - | tig0018560:12522-12541 | None:intergenic | 40.0% | |
| GCAGAACAAAACAAAGAGGA+TGG | - | tig0018560:12529-12548 | None:intergenic | 40.0% | |
| AATAGGGTCAAGCTTCAGAA+TGG | + | tig0018560:12641-12660 | Msa1367890:intron | 40.0% | |
| ATAGGGTCAAGCTTCAGAAT+GGG | + | tig0018560:12642-12661 | Msa1367890:intron | 40.0% | |
| AGTGTTGTAGAAGTAGCTTC+AGG | + | tig0018560:12868-12887 | Msa1367890:CDS | 40.0% | |
| !!! | GTACAGCTTATTTTGAAGGG+AGG | + | tig0018560:13138-13157 | Msa1367890:CDS | 40.0% |
| CAAATTATTAGGGGCTTTCC+TGG | - | tig0018560:13288-13307 | None:intergenic | 40.0% | |
| ! | AATTTGCAAGTAGTGGGGAA+TGG | + | tig0018560:13302-13321 | Msa1367890:CDS | 40.0% |
| TCAGGAGCAATATTGTTGCA+TGG | + | tig0018560:13494-13513 | Msa1367890:intron | 40.0% | |
| AGATAAAGGAACAGCGACAT+TGG | + | tig0018560:13586-13605 | Msa1367890:CDS | 40.0% | |
| GATAAAGGAACAGCGACATT+GGG | + | tig0018560:13587-13606 | Msa1367890:CDS | 40.0% | |
| CATTGGGGTTCAGATACAAA+AGG | + | tig0018560:13669-13688 | Msa1367890:CDS | 40.0% | |
| !!! | TATATGCTGTGTTTTAGGGG+TGG | + | tig0018560:14109-14128 | Msa1367890:intron | 40.0% |
| AATGGCTTAGCTACACTTGT+AGG | + | tig0018560:14156-14175 | Msa1367890:CDS | 40.0% | |
| ACTTGTAGGTACATACCTGT+TGG | + | tig0018560:14170-14189 | Msa1367890:CDS | 40.0% | |
| !!! | GTACATACCTGTTGGTCTTT+TGG | + | tig0018560:14178-14197 | Msa1367890:CDS | 40.0% |
| GGATTTAGAGGTCAATGAGT+TGG | - | tig0018560:14482-14501 | None:intergenic | 40.0% | |
| TCTTCTAACAACGGCATCTA+CGG | + | tig0018560:14579-14598 | Msa1367890:intron | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | - | tig0018560:14699-14718 | None:intergenic | 40.0% | |
| AAGTAAGTGTAGCGAAGATG+AGG | - | tig0018560:14744-14763 | None:intergenic | 40.0% | |
| CACTTACTTTACTCTCGTGT+TGG | + | tig0018560:14755-14774 | Msa1367890:intron | 40.0% | |
| TGTGTTCAACAGGATGTAGT+TGG | + | tig0018560:15169-15188 | Msa1367890:intron | 40.0% | |
| TTCAACAGGATGTAGTTGGT+AGG | + | tig0018560:15173-15192 | Msa1367890:intron | 40.0% | |
| TTACTTGGCAAAGTTCCAGA+TGG | + | tig0018560:15372-15391 | Msa1367890:CDS | 40.0% | |
| GCTTACGATAGAGCTGAAAA+TGG | + | tig0018560:15426-15445 | Msa1367890:CDS | 40.0% | |
| ! | CTGAGCATTTTCCAACTAAC+TGG | - | tig0018560:15537-15556 | None:intergenic | 40.0% |
| CAGTTAGTTGGAAAATGCTC+AGG | + | tig0018560:15535-15554 | Msa1367890:three_prime_UTR | 40.0% | |
| ! | ATGCCAACTTTTGCATTCTC+TGG | + | tig0018560:15721-15740 | Msa1367890:three_prime_UTR | 40.0% |
| TGACCAGAGAATGCAAAAGT+TGG | - | tig0018560:15727-15746 | None:intergenic | 40.0% | |
| CGAAGGAAGTCCTTCTTAAC+AGG | - | tig0018560:10399-10418 | None:intergenic | 45.0% | |
| GTAGTAGTAGTTCGATCAGG+AGG | - | tig0018560:10426-10445 | None:intergenic | 45.0% | |
| TTTCTTCTCCTTGGCGAGAA+CGG | - | tig0018560:10484-10503 | None:intergenic | 45.0% | |
| GAAGACGTTCACGTTTGAGT+TGG | - | tig0018560:10515-10534 | None:intergenic | 45.0% | |
| ACTCAAACGTGAACGTCTTC+AGG | + | tig0018560:10515-10534 | Msa1367890:CDS | 45.0% | |
| AAACGTGAACGTCTTCAGGT+AGG | + | tig0018560:10519-10538 | Msa1367890:intron | 45.0% | |
| TGTCCAAACATTGCCAAGTC+AGG | + | tig0018560:10645-10664 | Msa1367890:CDS | 45.0% | |
| !! | TCACCTGACTTGGCAATGTT+TGG | - | tig0018560:10651-10670 | None:intergenic | 45.0% |
| !! | GCAGAAATTGGCTGATTTGG+AGG | + | tig0018560:10819-10838 | Msa1367890:intron | 45.0% |
| GCCCCTTCAGATTTCAGAAA+AGG | - | tig0018560:10853-10872 | None:intergenic | 45.0% | |
| GCCGTCAAAAACAAAGATGG+TGG | + | tig0018560:11592-11611 | Msa1367890:CDS | 45.0% | |
| TTGTGCGGTTACATCTGAGT+TGG | + | tig0018560:11648-11667 | Msa1367890:CDS | 45.0% | |
| GATGAGGAGACGGAAAATGA+AGG | + | tig0018560:11859-11878 | Msa1367890:CDS | 45.0% | |
| GAGATTTCCAACAGTGGTCA+AGG | - | tig0018560:12155-12174 | None:intergenic | 45.0% | |
| GAAAGGGAGATTTCCAACAG+TGG | - | tig0018560:12161-12180 | None:intergenic | 45.0% | |
| CTGTTGGAAATCTCCCTTTC+CGG | + | tig0018560:12161-12180 | Msa1367890:CDS | 45.0% | |
| CTTTGCAAACTCTCCGGAAA+GGG | - | tig0018560:12177-12196 | None:intergenic | 45.0% | |
| ACTTTGCAAACTCTCCGGAA+AGG | - | tig0018560:12178-12197 | None:intergenic | 45.0% | |
| CAGGCAATTCCCACATAGTT+TGG | + | tig0018560:12350-12369 | Msa1367890:intron | 45.0% | |
| TTTCAAAACTCTGCTGGGAC+TGG | + | tig0018560:12482-12501 | Msa1367890:intron | 45.0% | |
| ! | ATTGTTGTGAATAAGGGCGC+TGG | + | tig0018560:12811-12830 | Msa1367890:CDS | 45.0% |
| ACAACACTTTGCATGCGCAT+TGG | - | tig0018560:12856-12875 | None:intergenic | 45.0% | |
| GCTAGTGCAGTGACAATACA+TGG | + | tig0018560:13203-13222 | Msa1367890:CDS | 45.0% | |
| TGACAATACATGGCAGGTCA+CGG | + | tig0018560:13213-13232 | Msa1367890:CDS | 45.0% | |
| TATACGTAATCCCAGTCAGC+AGG | - | tig0018560:13257-13276 | None:intergenic | 45.0% | |
| !! | GTTCAGGGCATTCAGTTTTG+TGG | - | tig0018560:13358-13377 | None:intergenic | 45.0% |
| TCAAGCATGTGGCAAGTTCA+GGG | - | tig0018560:13373-13392 | None:intergenic | 45.0% | |
| ATCAAGCATGTGGCAAGTTC+AGG | - | tig0018560:13374-13393 | None:intergenic | 45.0% | |
| TGAGTGTATAAGGGGTCTCT+TGG | + | tig0018560:13922-13941 | Msa1367890:intron | 45.0% | |
| !!! | ACCTGTTGGTCTTTTGGATG+TGG | + | tig0018560:14184-14203 | Msa1367890:CDS | 45.0% |
| ACCACATCCAAAAGACCAAC+AGG | - | tig0018560:14188-14207 | None:intergenic | 45.0% | |
| GGACGCCAATTTATTCGTTG+TGG | - | tig0018560:14212-14231 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | tig0018560:14400-14419 | Msa1367890:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | tig0018560:14401-14420 | Msa1367890:intron | 45.0% |
| AGGAGAGTCAGGTTAGAAGA+GGG | - | tig0018560:14546-14565 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | tig0018560:14557-14576 | None:intergenic | 45.0% | |
| CTTCTAACAACGGCATCTAC+GGG | + | tig0018560:14580-14599 | Msa1367890:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | - | tig0018560:14672-14691 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | - | tig0018560:14673-14692 | None:intergenic | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | - | tig0018560:14674-14693 | None:intergenic | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | - | tig0018560:14705-14724 | None:intergenic | 45.0% | |
| GATGAGTGGTAAGACTAGAC+AGG | - | tig0018560:14710-14729 | None:intergenic | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | tig0018560:14842-14861 | Msa1367890:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | tig0018560:14861-14880 | None:intergenic | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | - | tig0018560:14875-14894 | None:intergenic | 45.0% | |
| TTCATCGTATTCAAGCTGGG+TGG | - | tig0018560:14884-14903 | None:intergenic | 45.0% | |
| ! | TCGTTTAAGAGTATGGGACC+AGG | - | tig0018560:15315-15334 | None:intergenic | 45.0% |
| GGTGCAAAAGTAAAGCCATC+TGG | - | tig0018560:15390-15409 | None:intergenic | 45.0% | |
| ! | GCATTTTCCAACTAACTGGG+CGG | - | tig0018560:15533-15552 | None:intergenic | 45.0% |
| ACCATTCACTCGTCTACTCT+AGG | + | tig0018560:15631-15650 | Msa1367890:three_prime_UTR | 45.0% | |
| TCCTAGAGTAGACGAGTGAA+TGG | - | tig0018560:15635-15654 | None:intergenic | 45.0% | |
| !!! | AAATTTTATTACTAAATTAT+TGG | - | tig0018560:12463-12482 | None:intergenic | 5.0% |
| GTAGTAGTTCGATCAGGAGG+AGG | - | tig0018560:10423-10442 | None:intergenic | 50.0% | |
| AGGTTTGTCGTTAGGAGCAG+AGG | - | tig0018560:10460-10479 | None:intergenic | 50.0% | |
| AGAACGGGAGGTTTGTCGTT+AGG | - | tig0018560:10468-10487 | None:intergenic | 50.0% | |
| TTCTTCTCCTTGGCGAGAAC+GGG | - | tig0018560:10483-10502 | None:intergenic | 50.0% | |
| TGGTGTCCGAAACGCTAACA+CGG | - | tig0018560:11212-11231 | None:intergenic | 50.0% | |
| ! | CGCCATCAGTCTGATGATGA+CGG | + | tig0018560:11694-11713 | Msa1367890:CDS | 50.0% |
| AGCCGTCATCATCAGACTGA+TGG | - | tig0018560:11699-11718 | None:intergenic | 50.0% | |
| !! | TCTGATGATGACGGCTCTTG+TGG | + | tig0018560:11703-11722 | Msa1367890:CDS | 50.0% |
| !! | CTGATGATGACGGCTCTTGT+GGG | + | tig0018560:11704-11723 | Msa1367890:CDS | 50.0% |
| !! | TGATGATGACGGCTCTTGTG+GGG | + | tig0018560:11705-11724 | Msa1367890:CDS | 50.0% |
| TGCAGCTTCCGTCCACAATT+TGG | - | tig0018560:12015-12034 | None:intergenic | 50.0% | |
| GGGCACATCCAGATACTGTA+GGG | + | tig0018560:12716-12735 | Msa1367890:CDS | 50.0% | |
| GTGCAGTGACAATACATGGC+AGG | + | tig0018560:13207-13226 | Msa1367890:CDS | 50.0% | |
| ! | CTATAGCAAGCCTGCTGACT+GGG | + | tig0018560:13244-13263 | Msa1367890:CDS | 50.0% |
| CGACATTGGGACATCAGTTC+TGG | + | tig0018560:13600-13619 | Msa1367890:CDS | 50.0% | |
| !! | TTTTAGGGGTGGAGACTACC+AGG | + | tig0018560:14120-14139 | Msa1367890:intron | 50.0% |
| TGGCGTCCACCATCTTACTA+TGG | + | tig0018560:14224-14243 | Msa1367890:CDS | 50.0% | |
| GGCGTCCACCATCTTACTAT+GGG | + | tig0018560:14225-14244 | Msa1367890:CDS | 50.0% | |
| GTCCACCATCTTACTATGGG+CGG | + | tig0018560:14228-14247 | Msa1367890:CDS | 50.0% | |
| TCCACCATCTTACTATGGGC+GGG | + | tig0018560:14229-14248 | Msa1367890:CDS | 50.0% | |
| TCATCCCGCCCATAGTAAGA+TGG | - | tig0018560:14236-14255 | None:intergenic | 50.0% | |
| GGATGACCTTGAGACACTGA+TGG | + | tig0018560:14250-14269 | Msa1367890:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | tig0018560:14402-14421 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | tig0018560:14399-14418 | Msa1367890:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | tig0018560:14405-14424 | Msa1367890:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | - | tig0018560:14413-14432 | None:intergenic | 50.0% | |
| ATATAGCCGACCCCACTTAG+TGG | - | tig0018560:14414-14433 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCGGCTATA+TGG | + | tig0018560:14413-14432 | Msa1367890:intron | 50.0% | |
| AGTCAGGTTAGAAGAGGGAG+AGG | - | tig0018560:14541-14560 | None:intergenic | 50.0% | |
| GAGGAGAGTCAGGTTAGAAG+AGG | - | tig0018560:14547-14566 | None:intergenic | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | + | tig0018560:14666-14685 | Msa1367890:intron | 50.0% | |
| CACCATTAGAGAGAGAGTGG+GGG | - | tig0018560:14671-14690 | None:intergenic | 50.0% | |
| ATCGGACAGCAGTCAGTGTT+GGG | - | tig0018560:14791-14810 | None:intergenic | 50.0% | |
| TATCGGACAGCAGTCAGTGT+TGG | - | tig0018560:14792-14811 | None:intergenic | 50.0% | |
| CTTGCGATCAGTTGTTCGCC+AGG | - | tig0018560:10366-10385 | None:intergenic | 55.0% | |
| TTCGATCAGGAGGAGGACGA+AGG | - | tig0018560:10416-10435 | None:intergenic | 55.0% | |
| TCTGAAGGGGCTTGCCCTTA+TGG | + | tig0018560:10862-10881 | Msa1367890:CDS | 55.0% | |
| CTGAAGGGGCTTGCCCTTAT+GGG | + | tig0018560:10863-10882 | Msa1367890:CDS | 55.0% | |
| CCAGTGCCGTGTTAGCGTTT+CGG | + | tig0018560:11203-11222 | Msa1367890:intron | 55.0% | |
| CTTGCACCCTTGACCACTGT+TGG | + | tig0018560:12145-12164 | Msa1367890:CDS | 55.0% | |
| GGGGCACATCCAGATACTGT+AGG | + | tig0018560:12715-12734 | Msa1367890:CDS | 55.0% | |
| ACAGCTCGCCCTACAGTATC+TGG | - | tig0018560:12727-12746 | None:intergenic | 55.0% | |
| GCTATAGCAAGCCTGCTGAC+TGG | + | tig0018560:13243-13262 | Msa1367890:CDS | 55.0% | |
| ACCACGGGCAATCAAGCATG+TGG | - | tig0018560:13384-13403 | None:intergenic | 55.0% | |
| ATGACTGTTGTGTGCAGCCC+TGG | + | tig0018560:13553-13572 | Msa1367890:intron | 55.0% | |
| GACTACCAGGCGGTTCTTGT+TGG | + | tig0018560:14133-14152 | Msa1367890:CDS | 55.0% | |
| CCATTCCAACAAGAACCGCC+TGG | - | tig0018560:14141-14160 | None:intergenic | 55.0% | |
| CCAGGCGGTTCTTGTTGGAA+TGG | + | tig0018560:14138-14157 | Msa1367890:CDS | 55.0% | |
| TCCCGCCCATAGTAAGATGG+TGG | - | tig0018560:14233-14252 | None:intergenic | 55.0% | |
| TACCCAGTCAGCTGCAGAGT+CGG | - | tig0018560:14279-14298 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | tig0018560:14407-14426 | None:intergenic | 55.0% | |
| AGGATGTTGCGCTGGATGAG+TGG | - | tig0018560:14724-14743 | None:intergenic | 55.0% | |
| CGAAGATGAGGATGTTGCGC+TGG | - | tig0018560:14732-14751 | None:intergenic | 55.0% | |
| TTTCCAACTAACTGGGCGGC+AGG | - | tig0018560:15529-15548 | None:intergenic | 55.0% | |
| CAAACCTCCCGTTCTCGCCA+AGG | + | tig0018560:10473-10492 | Msa1367890:CDS | 60.0% | |
| TTCTCCTTGGCGAGAACGGG+AGG | - | tig0018560:10480-10499 | None:intergenic | 60.0% | |
| CCGAAACGCTAACACGGCAC+TGG | - | tig0018560:11206-11225 | None:intergenic | 60.0% | |
| GCCACATGCTTGATTGCCCG+TGG | + | tig0018560:13380-13399 | Msa1367890:CDS | 60.0% | |
| TAGGGGTGGAGACTACCAGG+CGG | + | tig0018560:14123-14142 | Msa1367890:intron | 60.0% | |
| CGGAGGCCATCAGTGTCTCA+AGG | - | tig0018560:14259-14278 | None:intergenic | 60.0% | |
| CTCCGACTCTGCAGCTGACT+GGG | + | tig0018560:14274-14293 | Msa1367890:CDS | 60.0% | |
| ! | GGACAGCAGTCAGTGTTGGG+CGG | - | tig0018560:14788-14807 | None:intergenic | 60.0% |
| TTGCCTGCCGCCCAGTTAGT+TGG | + | tig0018560:15523-15542 | Msa1367890:three_prime_UTR | 60.0% | |
| GAGGGTGGCGAGGATGATCC+TGG | + | tig0018560:10345-10364 | Msa1367890:CDS | 65.0% | |
| CCAGTCAGCTGCAGAGTCGG+AGG | - | tig0018560:14276-14295 | None:intergenic | 65.0% | |
| CCTCCGACTCTGCAGCTGAC+TGG | + | tig0018560:14273-14292 | Msa1367890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018560 | gene | 10336 | 15773 | 10336 | ID=Msa1367890;Name=Msa1367890 |
| tig0018560 | mRNA | 10336 | 15773 | 10336 | ID=Msa1367890-mRNA-1;Parent=Msa1367890;Name=Msa1367890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=6|1|1|1|1|1|10|321|684 |
| tig0018560 | exon | 10336 | 10536 | 10336 | ID=Msa1367890-mRNA-1:exon:184;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 10621 | 10737 | 10621 | ID=Msa1367890-mRNA-1:exon:185;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 10823 | 11056 | 10823 | ID=Msa1367890-mRNA-1:exon:186;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 11574 | 11880 | 11574 | ID=Msa1367890-mRNA-1:exon:187;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 11996 | 12252 | 11996 | ID=Msa1367890-mRNA-1:exon:188;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 12646 | 12918 | 12646 | ID=Msa1367890-mRNA-1:exon:189;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 13134 | 13415 | 13134 | ID=Msa1367890-mRNA-1:exon:190;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 13570 | 13690 | 13570 | ID=Msa1367890-mRNA-1:exon:191;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 14126 | 14295 | 14126 | ID=Msa1367890-mRNA-1:exon:192;Parent=Msa1367890-mRNA-1 |
| tig0018560 | exon | 15354 | 15773 | 15354 | ID=Msa1367890-mRNA-1:exon:193;Parent=Msa1367890-mRNA-1 |
| tig0018560 | five_prime_UTR | 10336 | 10341 | 10336 | ID=Msa1367890-mRNA-1:five_prime_utr;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 10342 | 10536 | 10342 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 10621 | 10737 | 10621 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 10823 | 11056 | 10823 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 11574 | 11880 | 11574 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 11996 | 12252 | 11996 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 12646 | 12918 | 12646 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 13134 | 13415 | 13134 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 13570 | 13690 | 13570 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 14126 | 14295 | 14126 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | CDS | 15354 | 15452 | 15354 | ID=Msa1367890-mRNA-1:cds;Parent=Msa1367890-mRNA-1 |
| tig0018560 | three_prime_UTR | 15453 | 15773 | 15453 | ID=Msa1367890-mRNA-1:three_prime_utr;Parent=Msa1367890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
