Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365140 | XP_003604013.1 | 95.671 | 693 | 17 | 2 | 1 | 682 | 1 | 691 | 0.0 | 1359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365140 | sp|Q9T0J6|DUS3L_ARATH | 62.536 | 686 | 216 | 11 | 8 | 682 | 36 | 691 | 0.0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365140 | G7J7T8 | 95.671 | 693 | 17 | 2 | 1 | 682 | 1 | 691 | 0.0 | 1359 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1365140 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1362210 | Msa1365140 | 0.810952 | 8.925111e-51 | -8.615850e-47 |
| Msa1365140 | Msa1367890 | 0.947481 | 6.186907e-106 | -8.615850e-47 |
| Msa0617540 | Msa1365140 | 0.818799 | 1.622923e-52 | -8.615850e-47 |
| Msa0698780 | Msa1365140 | 0.846466 | 2.134231e-59 | -8.615850e-47 |
| Msa0140850 | Msa1365140 | 0.811091 | 8.324871e-51 | -8.615850e-47 |
| Msa1329750 | Msa1365140 | 0.826234 | 3.033862e-54 | -8.615850e-47 |
| Msa1021470 | Msa1365140 | 0.832445 | 9.413834e-56 | -8.615850e-47 |
| Msa1060230 | Msa1365140 | 0.823583 | 1.281170e-53 | -8.615850e-47 |
| Msa1085420 | Msa1365140 | 0.824238 | 8.995802e-54 | -8.615850e-47 |
| Msa0343500 | Msa1365140 | 0.804831 | 1.788644e-49 | -8.615850e-47 |
| Msa1148910 | Msa1365140 | 0.811908 | 5.533584e-51 | -8.615850e-47 |
| Msa0516810 | Msa1365140 | 0.835827 | 1.337414e-56 | -8.615850e-47 |
| Msa0524110 | Msa1365140 | 0.961978 | 2.473083e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365140 | MtrunA17_Chr3g0145331 | 95.671 | 693 | 17 | 2 | 1 | 682 | 1 | 691 | 0.0 | 1359 |
| Msa1365140 | MtrunA17_Chr8g0366841 | 28.000 | 250 | 157 | 7 | 325 | 558 | 1 | 243 | 5.31e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365140 | AT4G38890.1 | 62.536 | 686 | 216 | 11 | 8 | 682 | 36 | 691 | 0.0 | 863 |
| Msa1365140 | AT3G49640.4 | 28.846 | 312 | 180 | 12 | 325 | 616 | 1 | 290 | 7.00e-27 | 112 |
| Msa1365140 | AT3G49640.1 | 28.846 | 312 | 180 | 12 | 325 | 616 | 1 | 290 | 2.65e-26 | 110 |
| Msa1365140 | AT3G49640.3 | 31.034 | 232 | 130 | 7 | 325 | 536 | 1 | 222 | 1.51e-21 | 95.1 |
| Msa1365140 | AT3G49640.5 | 30.045 | 223 | 129 | 9 | 400 | 616 | 50 | 251 | 2.85e-20 | 91.7 |
| Msa1365140 | AT3G49640.2 | 30.045 | 223 | 129 | 9 | 400 | 616 | 50 | 251 | 8.78e-20 | 90.9 |
| Msa1365140 | AT5G67220.1 | 27.404 | 208 | 143 | 4 | 328 | 533 | 87 | 288 | 4.19e-16 | 81.6 |
Find 171 sgRNAs with CRISPR-Local
Find 388 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTACTTGCAAATTATT+AGG | 0.146154 | tig0018197:+238904 | None:intergenic |
| CATTCATCTGAAGATTTATT+TGG | 0.158032 | tig0018197:-239521 | Msa1365140:CDS |
| AAAAGAAGCTTATTGATTTC+AGG | 0.171029 | tig0018197:-240090 | Msa1365140:CDS |
| CCACTACTTGCAAATTATTA+GGG | 0.199094 | tig0018197:+238905 | None:intergenic |
| TCTGAAGGGGCTTGCCCTTA+TGG | 0.207997 | tig0018197:-241311 | Msa1365140:CDS |
| TTTGAGTTTGGCATCAGTTT+TGG | 0.209531 | tig0018197:+241154 | None:intergenic |
| GTACATACCTGTTGGTCTTT+TGG | 0.213055 | tig0018197:-238022 | Msa1365140:CDS |
| TATTGACATTGTTGTGAATA+AGG | 0.222961 | tig0018197:-239396 | Msa1365140:CDS |
| CGGAGAGTTTGCAAAGTATT+AGG | 0.224724 | tig0018197:-240019 | Msa1365140:CDS |
| TTCAAGCTTAGATCAGTTTC+TGG | 0.235550 | tig0018197:+240127 | None:intergenic |
| GAAAATACCTTTATAGTTAC+TGG | 0.254912 | tig0018197:+239296 | None:intergenic |
| GGCAATGTGCACAAATCTTT+TGG | 0.260235 | tig0018197:-239972 | Msa1365140:CDS |
| AAGGAAAGGTGTGAAGTTAA+TGG | 0.263218 | tig0018197:-241227 | Msa1365140:CDS |
| TTTCATTTAGAGAGCGAAAA+TGG | 0.275072 | tig0018197:-241845 | None:intergenic |
| ATCAAGCATGTGGCAAGTTC+AGG | 0.280736 | tig0018197:+238829 | None:intergenic |
| CTGTTGGAAATCTCCCTTTC+CGG | 0.300157 | tig0018197:-240039 | Msa1365140:CDS |
| TTCAATCCGTTAGAAGATAA+AGG | 0.302002 | tig0018197:+241248 | None:intergenic |
| ACAGCTCGCCCTACAGTATC+TGG | 0.309018 | tig0018197:+239476 | None:intergenic |
| AGTGCAGAAATTGGCTGATT+TGG | 0.309679 | tig0018197:-241357 | Msa1365140:intron |
| CAAATTATTAGGGGCTTTCC+TGG | 0.310598 | tig0018197:+238915 | None:intergenic |
| TCACCTGACTTGGCAATGTT+TGG | 0.321046 | tig0018197:+241526 | None:intergenic |
| GAGCTGAAAATGGTTAATTC+TGG | 0.322645 | tig0018197:-236763 | Msa1365140:exon |
| TGCAGCTTCCGTCCACAATT+TGG | 0.322863 | tig0018197:+240188 | None:intergenic |
| TGGCGTCCACCATCTTACTA+TGG | 0.337133 | tig0018197:-237976 | Msa1365140:CDS |
| TAAGCATTTGATTTATGCTT+TGG | 0.341936 | tig0018197:+236791 | None:intergenic |
| CTGAAGGGGCTTGCCCTTAT+GGG | 0.347394 | tig0018197:-241310 | Msa1365140:CDS |
| TTCTTCTCCTTGGCGAGAAC+GGG | 0.350694 | tig0018197:+241694 | None:intergenic |
| CCTCCGACTCTGCAGCTGAC+TGG | 0.356032 | tig0018197:-237927 | Msa1365140:CDS |
| GAGGGTGGCGAGGATGATTC+TGG | 0.361324 | tig0018197:-241823 | Msa1365140:CDS |
| CTGGATATTTACAGAGATAA+AGG | 0.364629 | tig0018197:-238628 | Msa1365140:CDS |
| TTATTCACAACAATGTCAAT+AGG | 0.379362 | tig0018197:+239398 | None:intergenic |
| ACTCAAACGTGAACGTCTTC+AGG | 0.379434 | tig0018197:-241659 | Msa1365140:intron |
| TGAAATAACATGCGGTGAAA+TGG | 0.380122 | tig0018197:-239993 | Msa1365140:CDS |
| GCTTACGATAGAGCTGAAAA+TGG | 0.381878 | tig0018197:-236773 | Msa1365140:CDS |
| TGATAGCAAACTTTAGCTCT+TGG | 0.383995 | tig0018197:-239023 | Msa1365140:CDS |
| TGGTTCCACAACGAATAAAT+TGG | 0.387831 | tig0018197:-237996 | Msa1365140:CDS |
| CGAATGAAGTCCTTCTTAAC+AGG | 0.389902 | tig0018197:+241772 | None:intergenic |
| ATTGACATTGTTGTGAATAA+GGG | 0.391891 | tig0018197:-239395 | Msa1365140:CDS |
| CTTTATCTCTGTAAATATCC+AGG | 0.392779 | tig0018197:+238629 | None:intergenic |
| ACTCAAAACTCTTGGTCTCT+TGG | 0.396620 | tig0018197:-241138 | Msa1365140:intron |
| CGACATTGGGACATCAGTTC+TGG | 0.407363 | tig0018197:-238600 | Msa1365140:CDS |
| CGATATTCCAGTAACTATAA+AGG | 0.408639 | tig0018197:-239303 | Msa1365140:intron |
| AATGGCTTAGCTACACTTGT+AGG | 0.413091 | tig0018197:-238044 | Msa1365140:CDS |
| AAAGAAGCTTATTGATTTCA+GGG | 0.413252 | tig0018197:-240089 | Msa1365140:CDS |
| CTCCGACTCTGCAGCTGACT+GGG | 0.414717 | tig0018197:-237926 | Msa1365140:intron |
| CGATTATCAGAGATGTTACT+TGG | 0.415656 | tig0018197:-236842 | Msa1365140:CDS |
| CTGATGATGACGGCTCTTGT+GGG | 0.420813 | tig0018197:-240496 | Msa1365140:CDS |
| GACTACCAGGCGGTTCTTGT+TGG | 0.425033 | tig0018197:-238067 | Msa1365140:CDS |
| CCTTGAATGCTTGAATATCA+TGG | 0.425429 | tig0018197:+241464 | None:intergenic |
| TTTATCTTCTAACGGATTGA+AGG | 0.427366 | tig0018197:-241246 | Msa1365140:CDS |
| TCAAGCTTAGATCAGTTTCT+GGG | 0.431326 | tig0018197:+240128 | None:intergenic |
| GCCCCTTCAGATTTCAGAAA+AGG | 0.433089 | tig0018197:+241323 | None:intergenic |
| ATTATTCAGAATAAGTCAAA+AGG | 0.433111 | tig0018197:-240635 | Msa1365140:intron |
| TATTCACAACAATGTCAATA+GGG | 0.433555 | tig0018197:+239399 | None:intergenic |
| GCGTTTAGATTTCTTCTCCT+TGG | 0.436186 | tig0018197:+241684 | None:intergenic |
| TGTCCAAACATTGCCAAGTC+AGG | 0.437155 | tig0018197:-241529 | Msa1365140:CDS |
| GATAGCAAACTTTAGCTCTT+GGG | 0.437315 | tig0018197:-239022 | Msa1365140:CDS |
| TCTGATGATGACGGCTCTTG+TGG | 0.451639 | tig0018197:-240497 | Msa1365140:CDS |
| AATCTACAGGATAACCCATA+AGG | 0.452239 | tig0018197:+241296 | None:intergenic |
| AGAACGGGAGGTTTGTCGTT+AGG | 0.455603 | tig0018197:+241709 | None:intergenic |
| CTATAGCAAGCCTGCTGACT+GGG | 0.455984 | tig0018197:-238956 | Msa1365140:CDS |
| CTTGCACCCTTGACCACTGT+TGG | 0.457396 | tig0018197:-240055 | Msa1365140:CDS |
| TTGCCTGCCGCCCAGTTAGT+TGG | 0.460740 | tig0018197:-236676 | Msa1365140:three_prime_UTR |
| CCATGATATTCAAGCATTCA+AGG | 0.465143 | tig0018197:-241464 | Msa1365140:CDS |
| ACCACATCCAAAAGACCAAC+AGG | 0.471371 | tig0018197:+238015 | None:intergenic |
| CAAATAAATCTTCAGATGAA+TGG | 0.475342 | tig0018197:+239522 | None:intergenic |
| TCCTAGAGTAGACGAGTGAA+TGG | 0.481003 | tig0018197:+236567 | None:intergenic |
| CCTAATAATTTGCAAGTAGT+GGG | 0.481679 | tig0018197:-238904 | Msa1365140:CDS |
| GCTATAGCAAGCCTGCTGAC+TGG | 0.484632 | tig0018197:-238957 | Msa1365140:CDS |
| CCAGGCGGTTCTTGTTGGAA+TGG | 0.486124 | tig0018197:-238062 | Msa1365140:CDS |
| AGATAAAGGAACAGCGACAT+TGG | 0.487762 | tig0018197:-238614 | Msa1365140:CDS |
| TATTCAAGCATTCAAGGAAC+AGG | 0.489478 | tig0018197:-241458 | Msa1365140:intron |
| TTTCCAACTAACTGGGCGGC+AGG | 0.490634 | tig0018197:+236673 | None:intergenic |
| ATCTACAGGATAACCCATAA+GGG | 0.490649 | tig0018197:+241297 | None:intergenic |
| AGCTGTTGAACTAATAGAAA+AGG | 0.491306 | tig0018197:-239459 | Msa1365140:CDS |
| GGTGCAAAAGTAAAGCCATC+TGG | 0.492838 | tig0018197:+236812 | None:intergenic |
| CTAATACTTTGCAAACTCTC+CGG | 0.503430 | tig0018197:+240020 | None:intergenic |
| CCCTAATAATTTGCAAGTAG+TGG | 0.503908 | tig0018197:-238905 | Msa1365140:CDS |
| GAGATTTCCAACAGTGGTCA+AGG | 0.504165 | tig0018197:+240048 | None:intergenic |
| TTTCTTCTCCTTGGCGAGAA+CGG | 0.504371 | tig0018197:+241693 | None:intergenic |
| GATAAAGGAACAGCGACATT+GGG | 0.506305 | tig0018197:-238613 | Msa1365140:CDS |
| CTTCTAACGGATTGAAGGAA+AGG | 0.507476 | tig0018197:-241241 | Msa1365140:CDS |
| ATGCATAGCTCCTGTTAAGA+AGG | 0.509595 | tig0018197:-241782 | Msa1365140:CDS |
| CTTTGCAAACTCTCCGGAAA+GGG | 0.509906 | tig0018197:+240026 | None:intergenic |
| CAGTTAGTTGGAAAATGCTC+AGG | 0.516976 | tig0018197:-236664 | Msa1365140:three_prime_UTR |
| TATTTGGTGTACAAATCTGT+GGG | 0.518175 | tig0018197:-239505 | Msa1365140:CDS |
| GGTAAGCCTTTATCTTCTAA+CGG | 0.521576 | tig0018197:-241254 | Msa1365140:CDS |
| GCAGTAGTTCGATCGGGAGG+AGG | 0.523723 | tig0018197:+241748 | None:intergenic |
| AGTAGTAGCAGTAGTTCGAT+CGG | 0.524683 | tig0018197:+241741 | None:intergenic |
| AATAGGGTCAAGCTTCAGAA+TGG | 0.525188 | tig0018197:-239559 | Msa1365140:intron |
| AGTGTTGTAGAAGTAGCTTC+AGG | 0.527223 | tig0018197:-239332 | Msa1365140:CDS |
| GATGCCAAACTCAAAACTCT+TGG | 0.527301 | tig0018197:-241146 | Msa1365140:CDS |
| TGACCAGAGAATGCAAAAGT+TGG | 0.528228 | tig0018197:+236475 | None:intergenic |
| GCAGAAATTGGCTGATTTGG+AGG | 0.528457 | tig0018197:-241354 | Msa1365140:intron |
| GGACGCCAATTTATTCGTTG+TGG | 0.530603 | tig0018197:+237991 | None:intergenic |
| ACAACACTTTGCATGCGCAT+TGG | 0.530734 | tig0018197:+239347 | None:intergenic |
| TCAAGCATGTGGCAAGTTCA+GGG | 0.531108 | tig0018197:+238830 | None:intergenic |
| AGGTTTGTCGTTAGGAGCAG+AGG | 0.532676 | tig0018197:+241717 | None:intergenic |
| GGAATTAACATCACCTGACT+TGG | 0.533236 | tig0018197:+241516 | None:intergenic |
| TCCACCATCTTACTATGGGC+GGG | 0.533280 | tig0018197:-237971 | Msa1365140:CDS |
| TTCTCCTTGGCGAGAACGGG+AGG | 0.534154 | tig0018197:+241697 | None:intergenic |
| TTGTGCGGTTACATCTGAGT+TGG | 0.535905 | tig0018197:-240552 | Msa1365140:CDS |
| AACTTAGAATCTGAGTCAGC+AGG | 0.536668 | tig0018197:+240470 | None:intergenic |
| TTTATCTCTGTAAATATCCA+GGG | 0.542057 | tig0018197:+238630 | None:intergenic |
| AACTTTAATAAGTGCACCAC+GGG | 0.546118 | tig0018197:+238804 | None:intergenic |
| GTAGTAGCAGTAGTTCGATC+GGG | 0.546772 | tig0018197:+241742 | None:intergenic |
| CGCAGAAAATTGTGAAGATG+AGG | 0.547997 | tig0018197:-240357 | Msa1365140:CDS |
| CATTGGGGTTCAGATACAAA+AGG | 0.548625 | tig0018197:-238531 | Msa1365140:intron |
| TTATTTGGTGTACAAATCTG+TGG | 0.548788 | tig0018197:-239506 | Msa1365140:CDS |
| TACCCAGTCAGCTGCAGAGT+CGG | 0.552423 | tig0018197:+237924 | None:intergenic |
| ATAGCAAACTTTAGCTCTTG+GGG | 0.552673 | tig0018197:-239021 | Msa1365140:CDS |
| ATGGTGGTGATAAATGTGTT+TGG | 0.555686 | tig0018197:-240592 | Msa1365140:CDS |
| ATAGGGTCAAGCTTCAGAAT+GGG | 0.559018 | tig0018197:-239558 | Msa1365140:intron |
| AATTTGCAAGTAGTGGGGAA+TGG | 0.559807 | tig0018197:-238898 | Msa1365140:CDS |
| CACTACTTGCAAATTATTAG+GGG | 0.560194 | tig0018197:+238906 | None:intergenic |
| GGCGTCCACCATCTTACTAT+GGG | 0.561761 | tig0018197:-237975 | Msa1365140:CDS |
| AGCGAAAATGGAGGGTGGCG+AGG | 0.566641 | tig0018197:-241833 | Msa1365140:exon |
| AGTGAATGGTTTAAAAGTGA+AGG | 0.568665 | tig0018197:+236581 | None:intergenic |
| AGATTTCATTGATATAAACA+TGG | 0.570150 | tig0018197:-239426 | Msa1365140:CDS |
| GCTAGTGCAGTGACAATACA+TGG | 0.572548 | tig0018197:-238997 | Msa1365140:CDS |
| GTCCACCATCTTACTATGGG+CGG | 0.574224 | tig0018197:-237972 | Msa1365140:CDS |
| GAAGACGTTCACGTTTGAGT+TGG | 0.577856 | tig0018197:+241662 | None:intergenic |
| ATTTAGAGAGCGAAAATGGA+GGG | 0.578238 | tig0018197:-241841 | None:intergenic |
| ACCATTCACTCGTCTACTCT+AGG | 0.581144 | tig0018197:-236568 | Msa1365140:three_prime_UTR |
| GATGAGGAGACGGAAAATGA+AGG | 0.581481 | tig0018197:-240341 | Msa1365140:intron |
| ATTGTTGTGAATAAGGGCGC+TGG | 0.582709 | tig0018197:-239389 | Msa1365140:CDS |
| TATACGTAATCCCAGTCAGC+AGG | 0.583058 | tig0018197:+238946 | None:intergenic |
| ATTACGTATATCAGTGTACC+AGG | 0.583452 | tig0018197:-238933 | Msa1365140:CDS |
| TTATTCAGAATAAGTCAAAA+GGG | 0.583832 | tig0018197:-240634 | Msa1365140:intron |
| ATAAGATCTGAATCAGAGGC+AGG | 0.586531 | tig0018197:-240166 | Msa1365140:CDS |
| ACTTGGCAATGTTTGGACAA+AGG | 0.587871 | tig0018197:+241533 | None:intergenic |
| GTGCAGTGACAATACATGGC+AGG | 0.591689 | tig0018197:-238993 | Msa1365140:CDS |
| TCATCCCGCCCATAGTAAGA+TGG | 0.591793 | tig0018197:+237967 | None:intergenic |
| TTACTTGGCAAAGTTCCAGA+TGG | 0.593149 | tig0018197:-236827 | Msa1365140:CDS |
| GGGCACATCCAGATACTGTA+GGG | 0.597587 | tig0018197:-239484 | Msa1365140:CDS |
| AAATTGTGAAGATGAGGAGA+CGG | 0.597649 | tig0018197:-240351 | Msa1365140:CDS |
| CCATTCCAACAAGAACCGCC+TGG | 0.597793 | tig0018197:+238062 | None:intergenic |
| CCAGTCAGCTGCAGAGTCGG+AGG | 0.597833 | tig0018197:+237927 | None:intergenic |
| GATTTCATTGATATAAACAT+GGG | 0.598109 | tig0018197:-239425 | Msa1365140:CDS |
| CAGAAATTGGCTGATTTGGA+GGG | 0.598151 | tig0018197:-241353 | Msa1365140:CDS |
| GCCACATGCTTGATTGCCCG+TGG | 0.599335 | tig0018197:-238820 | Msa1365140:CDS |
| GGGGCACATCCAGATACTGT+AGG | 0.600909 | tig0018197:-239485 | Msa1365140:CDS |
| ACTTTGCAAACTCTCCGGAA+AGG | 0.609314 | tig0018197:+240025 | None:intergenic |
| CAAACCTCCCGTTCTCGCCA+AGG | 0.612861 | tig0018197:-241701 | Msa1365140:CDS |
| CGCCATCAGTCTGATGATGA+CGG | 0.614570 | tig0018197:-240506 | Msa1365140:CDS |
| CAAGCTTAGATCAGTTTCTG+GGG | 0.615452 | tig0018197:+240129 | None:intergenic |
| GATGTTATAAAAGATGATGA+TGG | 0.618144 | tig0018197:-240434 | Msa1365140:CDS |
| CGGAGGCCATCAGTGTCTCA+AGG | 0.618970 | tig0018197:+237944 | None:intergenic |
| TGATGATGACGGCTCTTGTG+GGG | 0.619036 | tig0018197:-240495 | Msa1365140:CDS |
| AGATTTCCAACAGTGGTCAA+GGG | 0.619386 | tig0018197:+240049 | None:intergenic |
| CTGCATAAGATCTGAATCAG+AGG | 0.625016 | tig0018197:-240170 | Msa1365140:CDS |
| TGACAATACATGGCAGGTCA+CGG | 0.625204 | tig0018197:-238987 | Msa1365140:CDS |
| CATTTAGAGAGCGAAAATGG+AGG | 0.626167 | tig0018197:-241842 | None:intergenic |
| TCCCGCCCATAGTAAGATGG+TGG | 0.627157 | tig0018197:+237970 | None:intergenic |
| AGCCGTCATCATCAGACTGA+TGG | 0.627690 | tig0018197:+240504 | None:intergenic |
| ACTTGTAGGTACATACCTGT+TGG | 0.629119 | tig0018197:-238030 | Msa1365140:CDS |
| GGATGACCTTGAGACACTGA+TGG | 0.629574 | tig0018197:-237950 | Msa1365140:CDS |
| GAGTGTTGATGACCAAATTG+TGG | 0.636784 | tig0018197:-240200 | Msa1365140:CDS |
| CTAATAATTTGCAAGTAGTG+GGG | 0.639061 | tig0018197:-238903 | Msa1365140:CDS |
| ACCACGGGCAATCAAGCATG+TGG | 0.640032 | tig0018197:+238819 | None:intergenic |
| GTAGCAGTAGTTCGATCGGG+AGG | 0.643717 | tig0018197:+241745 | None:intergenic |
| TGATGACAATGGTTCTTGTG+CGG | 0.659310 | tig0018197:-240567 | Msa1365140:CDS |
| ATTTGGTGTACAAATCTGTG+GGG | 0.684676 | tig0018197:-239504 | Msa1365140:CDS |
| TGTGTTTGGTCTGATGACAA+TGG | 0.694284 | tig0018197:-240578 | Msa1365140:CDS |
| GTTGATGACCAAATTGTGGA+CGG | 0.696468 | tig0018197:-240196 | Msa1365140:CDS |
| GAGTTGGAAAACAAAGACGA+TGG | 0.697495 | tig0018197:-240536 | Msa1365140:CDS |
| TAGAGAGCGAAAATGGAGGG+TGG | 0.698133 | tig0018197:-241838 | None:intergenic |
| GAAAGGGAGATTTCCAACAG+TGG | 0.699664 | tig0018197:+240042 | None:intergenic |
| TAACTTTAATAAGTGCACCA+CGG | 0.702021 | tig0018197:+238803 | None:intergenic |
| TTAGGAGCTGAAATAACATG+CGG | 0.710264 | tig0018197:-240001 | Msa1365140:CDS |
| TAGGGGTGGAGACTACCAGG+CGG | 0.796234 | tig0018197:-238077 | Msa1365140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTATTAATTTACAA+GGG | - | tig0018197:236879-236898 | Msa1365140:intron | 10.0% |
| !!! | ATCGATTAATTTTTTTAAAA+TGG | - | tig0018197:240995-241014 | Msa1365140:intron | 10.0% |
| !!! | TAAAATCTTAATTTTATACA+AGG | + | tig0018197:241091-241110 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTTG+AGG | - | tig0018197:241286-241305 | Msa1365140:CDS | 10.0% |
| !!! | ACTCTAAAAATAATAATTAT+TGG | + | tig0018197:241781-241800 | None:intergenic | 10.0% |
| !! | CAATTGTTTATTAATTTACA+AGG | - | tig0018197:236878-236897 | Msa1365140:intron | 15.0% |
| !! | ATTGTTTATTAATTTACAAG+GGG | - | tig0018197:236880-236899 | Msa1365140:intron | 15.0% |
| !!! | GTGTGTTTTTAATTTTAATA+TGG | - | tig0018197:237554-237573 | Msa1365140:intron | 15.0% |
| !!! | ATAATTTTGCTTTTGTAATA+GGG | - | tig0018197:238705-238724 | Msa1365140:intron | 15.0% |
| !!! | ATACAAAAGGTATATTTTAT+TGG | - | tig0018197:239762-239781 | Msa1365140:intron | 15.0% |
| !! | AATCTAATATTATAATATCC+TGG | - | tig0018197:241375-241394 | Msa1365140:intron | 15.0% |
| !! | GCTATTTATATAGAAAAGAA+GGG | + | tig0018197:236653-236672 | None:intergenic | 20.0% |
| !! | AGCTATTTATATAGAAAAGA+AGG | + | tig0018197:236654-236673 | None:intergenic | 20.0% |
| !! | TTGTTTATTAATTTACAAGG+GGG | - | tig0018197:236881-236900 | Msa1365140:intron | 20.0% |
| !! | ATGTGTATTTAAAAATCTAC+AGG | + | tig0018197:237000-237019 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATACACATCAAG+AGG | - | tig0018197:237004-237023 | Msa1365140:intron | 20.0% |
| !!! | TTTTTAAATACACATCAAGA+GGG | - | tig0018197:237005-237024 | Msa1365140:intron | 20.0% |
| !! | TTTCATAGCAATTATGAATT+GGG | + | tig0018197:237224-237243 | None:intergenic | 20.0% |
| !! | AATTTGAGCAATGATAATAA+AGG | + | tig0018197:237521-237540 | None:intergenic | 20.0% |
| !! | AATTAAAACTGAGTTCTTAA+AGG | + | tig0018197:237600-237619 | None:intergenic | 20.0% |
| !! | ATTATTCAGAATAAGTCAAA+AGG | - | tig0018197:237645-237664 | Msa1365140:intron | 20.0% |
| !! | TTATTCAGAATAAGTCAAAA+GGG | - | tig0018197:237646-237665 | Msa1365140:intron | 20.0% |
| !!! | TATATTTTGATACCAATTTC+AGG | - | tig0018197:238411-238430 | Msa1365140:intron | 20.0% |
| !!! | ACTTGATAAATTCATTTTAG+GGG | + | tig0018197:238470-238489 | None:intergenic | 20.0% |
| !!! | CACTTGATAAATTCATTTTA+GGG | + | tig0018197:238471-238490 | None:intergenic | 20.0% |
| !!! | TCACTTGATAAATTCATTTT+AGG | + | tig0018197:238472-238491 | None:intergenic | 20.0% |
| !!! | AATTATTGGTTCCTATATTA+AGG | + | tig0018197:238529-238548 | None:intergenic | 20.0% |
| !!! | CATAATTTTGCTTTTGTAAT+AGG | - | tig0018197:238704-238723 | Msa1365140:intron | 20.0% |
| !! | AGATTTCATTGATATAAACA+TGG | - | tig0018197:238854-238873 | Msa1365140:CDS | 20.0% |
| !! | GATTTCATTGATATAAACAT+GGG | - | tig0018197:238855-238874 | Msa1365140:CDS | 20.0% |
| !!! | TATATTATATGCTGTGTTTT+AGG | - | tig0018197:240184-240203 | Msa1365140:CDS | 20.0% |
| !!! | ATATTATATGCTGTGTTTTA+GGG | - | tig0018197:240185-240204 | Msa1365140:CDS | 20.0% |
| !!! | TAGAAAAGTTGATAGAAAAT+AGG | + | tig0018197:240716-240735 | None:intergenic | 20.0% |
| !! | AAATATAATGAATAAGTGTC+AGG | + | tig0018197:241058-241077 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGAGGGAA+AGG | - | tig0018197:241292-241311 | Msa1365140:CDS | 20.0% |
| ! | TGTTTATTAATTTACAAGGG+GGG | - | tig0018197:236882-236901 | Msa1365140:intron | 25.0% |
| ! | GTTTCATAGCAATTATGAAT+TGG | + | tig0018197:237225-237244 | None:intergenic | 25.0% |
| ! | ATTATTCATCAATATGCTAC+TGG | - | tig0018197:237431-237450 | Msa1365140:intron | 25.0% |
| !! | AATAATGATCGATTCAAATG+TGG | + | tig0018197:237631-237650 | None:intergenic | 25.0% |
| ! | GATGTTATAAAAGATGATGA+TGG | - | tig0018197:237846-237865 | Msa1365140:intron | 25.0% |
| !!! | AAAAGAAGCTTATTGATTTC+AGG | - | tig0018197:238190-238209 | Msa1365140:intron | 25.0% |
| !!! | AAAGAAGCTTATTGATTTCA+GGG | - | tig0018197:238191-238210 | Msa1365140:intron | 25.0% |
| !!! | AAAATTTTTCAAAACTCTGC+TGG | - | tig0018197:238556-238575 | Msa1365140:CDS | 25.0% |
| !!! | AAATTTTTCAAAACTCTGCT+GGG | - | tig0018197:238557-238576 | Msa1365140:CDS | 25.0% |
| ! | CAAATAAATCTTCAGATGAA+TGG | + | tig0018197:238761-238780 | None:intergenic | 25.0% |
| ! | CATTCATCTGAAGATTTATT+TGG | - | tig0018197:238759-238778 | Msa1365140:intron | 25.0% |
| ! | TATTCACAACAATGTCAATA+GGG | + | tig0018197:238884-238903 | None:intergenic | 25.0% |
| ! | TTATTCACAACAATGTCAAT+AGG | + | tig0018197:238885-238904 | None:intergenic | 25.0% |
| ! | TATTGACATTGTTGTGAATA+AGG | - | tig0018197:238884-238903 | Msa1365140:CDS | 25.0% |
| ! | ATTGACATTGTTGTGAATAA+GGG | - | tig0018197:238885-238904 | Msa1365140:CDS | 25.0% |
| ! | GAAAATACCTTTATAGTTAC+TGG | + | tig0018197:238987-239006 | None:intergenic | 25.0% |
| ! | ATATCTTAAGCAAGCATATT+GGG | + | tig0018197:239167-239186 | None:intergenic | 25.0% |
| ! | ACCTAATGCAATAGATAAAT+GGG | + | tig0018197:239196-239215 | None:intergenic | 25.0% |
| ! | TACCTAATGCAATAGATAAA+TGG | + | tig0018197:239197-239216 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTCATTTGTAGAC+TGG | - | tig0018197:239407-239426 | Msa1365140:CDS | 25.0% |
| ! | TTTATCTCTGTAAATATCCA+GGG | + | tig0018197:239653-239672 | None:intergenic | 25.0% |
| !! | TTCAAAGATTTTGTGCATTT+TGG | - | tig0018197:239719-239738 | Msa1365140:intron | 25.0% |
| !!! | CTGTTTAGTGTTTTTTTTTG+AGG | + | tig0018197:239877-239896 | None:intergenic | 25.0% |
| !!! | AAATTTGTTGCATCTACTTA+AGG | + | tig0018197:239938-239957 | None:intergenic | 25.0% |
| ! | TTAAGTAGATGCAACAAATT+TGG | - | tig0018197:239937-239956 | Msa1365140:intron | 25.0% |
| ! | AAACATTGATGAGTGTATAA+GGG | - | tig0018197:239993-240012 | Msa1365140:CDS | 25.0% |
| ! | CTACATATGTAAAAGATTGA+AGG | + | tig0018197:240091-240110 | None:intergenic | 25.0% |
| !!! | TATTATATGCTGTGTTTTAG+GGG | - | tig0018197:240186-240205 | Msa1365140:CDS | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | tig0018197:240534-240553 | Msa1365140:CDS | 25.0% |
| !! | TCTATCAACTTTTCTACTAT+AGG | - | tig0018197:240720-240739 | Msa1365140:intron | 25.0% |
| !!! | ATCTTCATTTTGAGAAGAAA+GGG | + | tig0018197:241171-241190 | None:intergenic | 25.0% |
| !!! | AATCTTCATTTTGAGAAGAA+AGG | + | tig0018197:241172-241191 | None:intergenic | 25.0% |
| !! | AAAGAATCGTTTAAGAGTAT+GGG | + | tig0018197:241402-241421 | None:intergenic | 25.0% |
| ! | AAAAGAATCGTTTAAGAGTA+TGG | + | tig0018197:241403-241422 | None:intergenic | 25.0% |
| !! | CGATTCTTTTTATTATACAC+AGG | - | tig0018197:241413-241432 | Msa1365140:intron | 25.0% |
| !! | TAAGCATTTGATTTATGCTT+TGG | + | tig0018197:241492-241511 | None:intergenic | 25.0% |
| !!! | CTTTGTTTTGTTATTTGGAA+GGG | - | tig0018197:241662-241681 | Msa1365140:CDS | 25.0% |
| ! | AAACGACAGTTTTCTTGATA+AGG | + | tig0018197:236793-236812 | None:intergenic | 30.0% |
| TTCAATCCGTTAGAAGATAA+AGG | + | tig0018197:237035-237054 | None:intergenic | 30.0% | |
| !! | TTTATCTTCTAACGGATTGA+AGG | - | tig0018197:237034-237053 | Msa1365140:intron | 30.0% |
| ! | AAGATGTTCAGAAGCTTTTA+TGG | - | tig0018197:237084-237103 | Msa1365140:intron | 30.0% |
| ! | TTTCTAGTGTACTACTATGT+AGG | + | tig0018197:237393-237412 | None:intergenic | 30.0% |
| ATGAATAATTACAAGCGCAT+TGG | + | tig0018197:237420-237439 | None:intergenic | 30.0% | |
| TAATAAAGGAACACTGACAA+AGG | + | tig0018197:237507-237526 | None:intergenic | 30.0% | |
| ! | TGCGGTTTTTCTTTTCTTTT+GGG | + | tig0018197:237907-237926 | None:intergenic | 30.0% |
| ACTTTAGTGCTTATAGTCTA+TGG | - | tig0018197:237979-237998 | Msa1365140:CDS | 30.0% | |
| TCAACTAGAATTGAATGCAA+AGG | + | tig0018197:238031-238050 | None:intergenic | 30.0% | |
| ATCCTGAGTATGATGTATAT+AGG | - | tig0018197:238368-238387 | Msa1365140:intron | 30.0% | |
| TCCTGAGTATGATGTATATA+GGG | - | tig0018197:238369-238388 | Msa1365140:intron | 30.0% | |
| AGACAAATACCAAACTATGT+GGG | + | tig0018197:238442-238461 | None:intergenic | 30.0% | |
| AAGACAAATACCAAACTATG+TGG | + | tig0018197:238443-238462 | None:intergenic | 30.0% | |
| GAACGTTGAAACCTTAATAT+AGG | - | tig0018197:238515-238534 | Msa1365140:intron | 30.0% | |
| GCAAAAGAAAAGAAAAGATG+AGG | + | tig0018197:238642-238661 | None:intergenic | 30.0% | |
| !! | TTATTTGGTGTACAAATCTG+TGG | - | tig0018197:238774-238793 | Msa1365140:intron | 30.0% |
| !! | TATTTGGTGTACAAATCTGT+GGG | - | tig0018197:238775-238794 | Msa1365140:intron | 30.0% |
| AGCTGTTGAACTAATAGAAA+AGG | - | tig0018197:238821-238840 | Msa1365140:CDS | 30.0% | |
| CGATATTCCAGTAACTATAA+AGG | - | tig0018197:238977-238996 | Msa1365140:CDS | 30.0% | |
| GGACACAATGAAATTTGTAT+CGG | - | tig0018197:239026-239045 | Msa1365140:CDS | 30.0% | |
| !!! | GCTAACAAGATTTTTTTTCC+TGG | + | tig0018197:239133-239152 | None:intergenic | 30.0% |
| TATCTTAAGCAAGCATATTG+GGG | + | tig0018197:239166-239185 | None:intergenic | 30.0% | |
| CATATCTTAAGCAAGCATAT+TGG | + | tig0018197:239168-239187 | None:intergenic | 30.0% | |
| ACCCATTTATCTATTGCATT+AGG | - | tig0018197:239192-239211 | Msa1365140:intron | 30.0% | |
| !!! | TACGTACAGCTTATTTTGAA+GGG | - | tig0018197:239215-239234 | Msa1365140:intron | 30.0% |
| CACTACTTGCAAATTATTAG+GGG | + | tig0018197:239377-239396 | None:intergenic | 30.0% | |
| CCACTACTTGCAAATTATTA+GGG | + | tig0018197:239378-239397 | None:intergenic | 30.0% | |
| ! | CCTAATAATTTGCAAGTAGT+GGG | - | tig0018197:239376-239395 | Msa1365140:CDS | 30.0% |
| ! | CTAATAATTTGCAAGTAGTG+GGG | - | tig0018197:239377-239396 | Msa1365140:CDS | 30.0% |
| TAACTTTAATAAGTGCACCA+CGG | + | tig0018197:239480-239499 | None:intergenic | 30.0% | |
| TAAAGTTAGTATTATCGCCT+TGG | - | tig0018197:239492-239511 | Msa1365140:CDS | 30.0% | |
| CTTTATCTCTGTAAATATCC+AGG | + | tig0018197:239654-239673 | None:intergenic | 30.0% | |
| CTGGATATTTACAGAGATAA+AGG | - | tig0018197:239652-239671 | Msa1365140:intron | 30.0% | |
| !!! | GTATATTTTATTGGTGCTGA+TGG | - | tig0018197:239771-239790 | Msa1365140:intron | 30.0% |
| CATCAATGTTTCGTATTCTT+TGG | + | tig0018197:239984-240003 | None:intergenic | 30.0% | |
| GAAACATTGATGAGTGTATA+AGG | - | tig0018197:239992-240011 | Msa1365140:CDS | 30.0% | |
| AACATTGATGAGTGTATAAG+GGG | - | tig0018197:239994-240013 | Msa1365140:CDS | 30.0% | |
| !! | TTCATGTTGTTTCTAGCAAA+TGG | + | tig0018197:240121-240140 | None:intergenic | 30.0% |
| TTAAACATGCTCAAGAAAAC+CGG | + | tig0018197:240400-240419 | None:intergenic | 30.0% | |
| ! | CATGTTTAAATCGTGTGTTT+TGG | - | tig0018197:240411-240430 | Msa1365140:CDS | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+CGG | + | tig0018197:240530-240549 | None:intergenic | 30.0% |
| AACCATTAGAAAGGATTTAG+AGG | + | tig0018197:240574-240593 | None:intergenic | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | + | tig0018197:240583-240602 | None:intergenic | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | - | tig0018197:240581-240600 | Msa1365140:CDS | 30.0% | |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | - | tig0018197:240591-240610 | Msa1365140:CDS | 30.0% |
| TGTTAGAAGAGTAGATCAAA+TGG | + | tig0018197:240649-240668 | None:intergenic | 30.0% | |
| TTGATCTACTCTTCTAACAA+CGG | - | tig0018197:240650-240669 | Msa1365140:intron | 30.0% | |
| TGATAGAAAATAGGCTTAGA+TGG | + | tig0018197:240707-240726 | None:intergenic | 30.0% | |
| ! | AAAGTATCACTTAAGCTGAA+AGG | + | tig0018197:240902-240921 | None:intergenic | 30.0% |
| ! | ATTTTCATCGTATTCAAGCT+GGG | + | tig0018197:240967-240986 | None:intergenic | 30.0% |
| ! | TATTTTCATCGTATTCAAGC+TGG | + | tig0018197:240968-240987 | None:intergenic | 30.0% |
| TTGCATGAAAAGAGAAGAAA+GGG | + | tig0018197:241198-241217 | None:intergenic | 30.0% | |
| TTTGCATGAAAAGAGAAGAA+AGG | + | tig0018197:241199-241218 | None:intergenic | 30.0% | |
| TTCTGTTGTCTTTGAATAGA+GGG | + | tig0018197:241223-241242 | None:intergenic | 30.0% | |
| TTTCTGTTGTCTTTGAATAG+AGG | + | tig0018197:241224-241243 | None:intergenic | 30.0% | |
| AGAAAATAGTTGTGTTCAAC+AGG | - | tig0018197:241239-241258 | Msa1365140:CDS | 30.0% | |
| !!! | TGTCGCTTTGTTTTGTTATT+TGG | - | tig0018197:241657-241676 | Msa1365140:intron | 30.0% |
| !!! | GCTTTGTTTTGTTATTTGGA+AGG | - | tig0018197:241661-241680 | Msa1365140:CDS | 30.0% |
| AGTGAATGGTTTAAAAGTGA+AGG | + | tig0018197:241702-241721 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCTTGATAAGGAC+AGG | + | tig0018197:236788-236807 | None:intergenic | 35.0% |
| CCTTGAATGCTTGAATATCA+TGG | + | tig0018197:236819-236838 | None:intergenic | 35.0% | |
| CCATGATATTCAAGCATTCA+AGG | - | tig0018197:236816-236835 | Msa1365140:CDS | 35.0% | |
| TATTCAAGCATTCAAGGAAC+AGG | - | tig0018197:236822-236841 | Msa1365140:CDS | 35.0% | |
| ! | TAATTTACAAGGGGGGTTTT+TGG | - | tig0018197:236889-236908 | Msa1365140:intron | 35.0% |
| !!! | TGTCCTTTTCTGAAATCTGA+AGG | - | tig0018197:236954-236973 | Msa1365140:intron | 35.0% |
| !!! | GTCCTTTTCTGAAATCTGAA+GGG | - | tig0018197:236955-236974 | Msa1365140:intron | 35.0% |
| !!! | TCCTTTTCTGAAATCTGAAG+GGG | - | tig0018197:236956-236975 | Msa1365140:intron | 35.0% |
| ATCTACAGGATAACCCATAA+GGG | + | tig0018197:236986-237005 | None:intergenic | 35.0% | |
| AATCTACAGGATAACCCATA+AGG | + | tig0018197:236987-237006 | None:intergenic | 35.0% | |
| GGTAAGCCTTTATCTTCTAA+CGG | - | tig0018197:237026-237045 | Msa1365140:intron | 35.0% | |
| ! | AAGGAAAGGTGTGAAGTTAA+TGG | - | tig0018197:237053-237072 | Msa1365140:intron | 35.0% |
| ! | TTGAGTTTGGCATCAGTTTT+GGG | + | tig0018197:237128-237147 | None:intergenic | 35.0% |
| !! | TTTGAGTTTGGCATCAGTTT+TGG | + | tig0018197:237129-237148 | None:intergenic | 35.0% |
| AGGCATAACATGAACAACAA+CGG | + | tig0018197:237188-237207 | None:intergenic | 35.0% | |
| TAGCAATTATGAATTGGGTG+AGG | + | tig0018197:237219-237238 | None:intergenic | 35.0% | |
| ! | CCTTTGATGTAAAGAAGTGT+CGG | - | tig0018197:237342-237361 | Msa1365140:intron | 35.0% |
| AATGCCGTCAAAAACAAAGA+TGG | - | tig0018197:237669-237688 | Msa1365140:intron | 35.0% | |
| !!! | ACCACCATCTTTGTTTTTGA+CGG | + | tig0018197:237676-237695 | None:intergenic | 35.0% |
| ! | ATGGTGGTGATAAATGTGTT+TGG | - | tig0018197:237688-237707 | Msa1365140:intron | 35.0% |
| !! | TTTCTTTTCTTTTGGGGACA+AGG | + | tig0018197:237900-237919 | None:intergenic | 35.0% |
| ! | GCGGTTTTTCTTTTCTTTTG+GGG | + | tig0018197:237906-237925 | None:intergenic | 35.0% |
| ! | CTGCGGTTTTTCTTTTCTTT+TGG | + | tig0018197:237908-237927 | None:intergenic | 35.0% |
| ! | CTCATCTTCACAATTTTCTG+CGG | + | tig0018197:237925-237944 | None:intergenic | 35.0% |
| AAATTGTGAAGATGAGGAGA+CGG | - | tig0018197:237929-237948 | Msa1365140:CDS | 35.0% | |
| TAGCTTCATATTGCTGAAAC+AGG | - | tig0018197:238054-238073 | Msa1365140:CDS | 35.0% | |
| TCAAGCTTAGATCAGTTTCT+GGG | + | tig0018197:238155-238174 | None:intergenic | 35.0% | |
| TTCAAGCTTAGATCAGTTTC+TGG | + | tig0018197:238156-238175 | None:intergenic | 35.0% | |
| CTAATACTTTGCAAACTCTC+CGG | + | tig0018197:238263-238282 | None:intergenic | 35.0% | |
| TTAGGAGCTGAAATAACATG+CGG | - | tig0018197:238279-238298 | Msa1365140:intron | 35.0% | |
| TGAAATAACATGCGGTGAAA+TGG | - | tig0018197:238287-238306 | Msa1365140:intron | 35.0% | |
| ! | AATGTGCACAAATCTTTTGG+AGG | - | tig0018197:238311-238330 | Msa1365140:intron | 35.0% |
| TCCCTATATACATCATACTC+AGG | + | tig0018197:238373-238392 | None:intergenic | 35.0% | |
| TGAGATAGTATATCCTCCAT+AGG | - | tig0018197:238489-238508 | Msa1365140:intron | 35.0% | |
| CAGAACAAAACAAAGAGGAT+GGG | + | tig0018197:238608-238627 | None:intergenic | 35.0% | |
| TTGTGCAGAACAAAACAAAG+AGG | + | tig0018197:238613-238632 | None:intergenic | 35.0% | |
| !! | ATTTGGTGTACAAATCTGTG+GGG | - | tig0018197:238776-238795 | Msa1365140:intron | 35.0% |
| TCCATGCTAAATGCAACAAT+AGG | - | tig0018197:239005-239024 | Msa1365140:CDS | 35.0% | |
| TCCTATTGTTGCATTTAGCA+TGG | + | tig0018197:239009-239028 | None:intergenic | 35.0% | |
| ! | CTTGATAGCTTCTTATGTTC+TGG | - | tig0018197:239063-239082 | Msa1365140:CDS | 35.0% |
| CTGGAAAACGTAAAAAGACT+TGG | + | tig0018197:239114-239133 | None:intergenic | 35.0% | |
| ! | CAAGTCTTTTTACGTTTTCC+AGG | - | tig0018197:239112-239131 | Msa1365140:intron | 35.0% |
| !!! | GTACGTACAGCTTATTTTGA+AGG | - | tig0018197:239214-239233 | Msa1365140:intron | 35.0% |
| !! | TGATAGCAAACTTTAGCTCT+TGG | - | tig0018197:239257-239276 | Msa1365140:intron | 35.0% |
| !! | GATAGCAAACTTTAGCTCTT+GGG | - | tig0018197:239258-239277 | Msa1365140:intron | 35.0% |
| !! | ATAGCAAACTTTAGCTCTTG+GGG | - | tig0018197:239259-239278 | Msa1365140:intron | 35.0% |
| ATTACGTATATCAGTGTACC+AGG | - | tig0018197:239347-239366 | Msa1365140:CDS | 35.0% | |
| ! | CCCTAATAATTTGCAAGTAG+TGG | - | tig0018197:239375-239394 | Msa1365140:CDS | 35.0% |
| CCCACTACTTGCAAATTATT+AGG | + | tig0018197:239379-239398 | None:intergenic | 35.0% | |
| AACTTTAATAAGTGCACCAC+GGG | + | tig0018197:239479-239498 | None:intergenic | 35.0% | |
| CATAAAATGAGATTGAGCCA+AGG | + | tig0018197:239512-239531 | None:intergenic | 35.0% | |
| ! | CTTGGCTCAATCTCATTTTA+TGG | - | tig0018197:239510-239529 | Msa1365140:CDS | 35.0% |
| TAATGCTAGTTGTCTTCATC+AGG | - | tig0018197:239556-239575 | Msa1365140:CDS | 35.0% | |
| !! | TGCATTTTGGTCTTCAACAT+TGG | - | tig0018197:239732-239751 | Msa1365140:intron | 35.0% |
| !! | GCATTTTGGTCTTCAACATT+GGG | - | tig0018197:239733-239752 | Msa1365140:intron | 35.0% |
| !! | CATTTTGGTCTTCAACATTG+GGG | - | tig0018197:239734-239753 | Msa1365140:intron | 35.0% |
| ACTTAAGGATCGTTCATTCT+TGG | + | tig0018197:239923-239942 | None:intergenic | 35.0% | |
| TGGACTAAGCATGTAATTTG+TGG | - | tig0018197:240022-240041 | Msa1365140:CDS | 35.0% | |
| ! | GGACTAAGCATGTAATTTGT+GGG | - | tig0018197:240023-240042 | Msa1365140:CDS | 35.0% |
| TGGTTCCACAACGAATAAAT+TGG | - | tig0018197:240284-240303 | Msa1365140:intron | 35.0% | |
| !! | ATGCAATTCCCTTTTGTTTC+CGG | - | tig0018197:240378-240397 | Msa1365140:CDS | 35.0% |
| CAAGAAAACCGGAAACAAAA+GGG | + | tig0018197:240389-240408 | None:intergenic | 35.0% | |
| TCAAGAAAACCGGAAACAAA+AGG | + | tig0018197:240390-240409 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | tig0018197:240550-240569 | None:intergenic | 35.0% |
| GACCTCTAAATCCTTTCTAA+TGG | - | tig0018197:240569-240588 | Msa1365140:CDS | 35.0% | |
| TAGAAGAGTAGATCAAATGG+AGG | + | tig0018197:240646-240665 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | tig0018197:240702-240721 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | + | tig0018197:240889-240908 | None:intergenic | 35.0% | |
| CGATTATCAGAGATGTTACT+TGG | - | tig0018197:241438-241457 | Msa1365140:intron | 35.0% | |
| GAGCTGAAAATGGTTAATTC+TGG | - | tig0018197:241517-241536 | Msa1365140:CDS | 35.0% | |
| ! | TGAGCATTTTCCAACTAACT+GGG | + | tig0018197:241617-241636 | None:intergenic | 35.0% |
| ATGCATAGCTCCTGTTAAGA+AGG | - | tig0018197:236498-236517 | Msa1365140:three_prime_UTR | 40.0% | |
| CGAATGAAGTCCTTCTTAAC+AGG | + | tig0018197:236511-236530 | None:intergenic | 40.0% | |
| AGTAGTAGCAGTAGTTCGAT+CGG | + | tig0018197:236542-236561 | None:intergenic | 40.0% | |
| GCGTTTAGATTTCTTCTCCT+TGG | + | tig0018197:236599-236618 | None:intergenic | 40.0% | |
| TCACTCTGTATGTATTCTGC+AGG | - | tig0018197:236705-236724 | Msa1365140:three_prime_UTR | 40.0% | |
| ACTTGGCAATGTTTGGACAA+AGG | + | tig0018197:236750-236769 | None:intergenic | 40.0% | |
| GGAATTAACATCACCTGACT+TGG | + | tig0018197:236767-236786 | None:intergenic | 40.0% | |
| TCGATGATGAGTGCAGAAAT+TGG | - | tig0018197:236914-236933 | Msa1365140:intron | 40.0% | |
| AGTGCAGAAATTGGCTGATT+TGG | - | tig0018197:236923-236942 | Msa1365140:intron | 40.0% | |
| !! | CAGAAATTGGCTGATTTGGA+GGG | - | tig0018197:236927-236946 | Msa1365140:intron | 40.0% |
| !! | CTTCTAACGGATTGAAGGAA+AGG | - | tig0018197:237039-237058 | Msa1365140:intron | 40.0% |
| ! | TGAGTTTGGCATCAGTTTTG+GGG | + | tig0018197:237127-237146 | None:intergenic | 40.0% |
| GATGCCAAACTCAAAACTCT+TGG | - | tig0018197:237134-237153 | Msa1365140:intron | 40.0% | |
| !!! | GAGACCAAGAGTTTTGAGTT+TGG | + | tig0018197:237141-237160 | None:intergenic | 40.0% |
| ACTCAAAACTCTTGGTCTCT+TGG | - | tig0018197:237142-237161 | Msa1365140:intron | 40.0% | |
| GGCATAACATGAACAACAAC+GGG | + | tig0018197:237187-237206 | None:intergenic | 40.0% | |
| AATTGGGTGAGGAAAATGAG+AGG | + | tig0018197:237208-237227 | None:intergenic | 40.0% | |
| AAACACAGACATGTCGATAG+TGG | - | tig0018197:237241-237260 | Msa1365140:intron | 40.0% | |
| ! | CTTTACATCAAAGGCATGTC+CGG | + | tig0018197:237336-237355 | None:intergenic | 40.0% |
| CCGACACTTCTTTACATCAA+AGG | + | tig0018197:237345-237364 | None:intergenic | 40.0% | |
| TGTGTTTGGTCTGATGACAA+TGG | - | tig0018197:237702-237721 | Msa1365140:intron | 40.0% | |
| TGATGACAATGGTTCTTGTG+CGG | - | tig0018197:237713-237732 | Msa1365140:intron | 40.0% | |
| GAGTTGGAAAACAAAGACGA+TGG | - | tig0018197:237744-237763 | Msa1365140:intron | 40.0% | |
| AACTTAGAATCTGAGTCAGC+AGG | + | tig0018197:237813-237832 | None:intergenic | 40.0% | |
| !! | TTTTGGGGACAAGGTATATC+AGG | + | tig0018197:237891-237910 | None:intergenic | 40.0% |
| CGCAGAAAATTGTGAAGATG+AGG | - | tig0018197:237923-237942 | Msa1365140:intron | 40.0% | |
| !! | GAGTGTTGATGACCAAATTG+TGG | - | tig0018197:238080-238099 | Msa1365140:intron | 40.0% |
| !! | GTTGATGACCAAATTGTGGA+CGG | - | tig0018197:238084-238103 | Msa1365140:intron | 40.0% |
| CTGCATAAGATCTGAATCAG+AGG | - | tig0018197:238110-238129 | Msa1365140:intron | 40.0% | |
| ATAAGATCTGAATCAGAGGC+AGG | - | tig0018197:238114-238133 | Msa1365140:intron | 40.0% | |
| CAAGCTTAGATCAGTTTCTG+GGG | + | tig0018197:238154-238173 | None:intergenic | 40.0% | |
| AGATTTCCAACAGTGGTCAA+GGG | + | tig0018197:238234-238253 | None:intergenic | 40.0% | |
| ! | CGGAGAGTTTGCAAAGTATT+AGG | - | tig0018197:238261-238280 | Msa1365140:intron | 40.0% |
| ! | GGCAATGTGCACAAATCTTT+TGG | - | tig0018197:238308-238327 | Msa1365140:intron | 40.0% |
| ATGTGGGAATTGCCTGAAAT+TGG | + | tig0018197:238426-238445 | None:intergenic | 40.0% | |
| TTCAACGTTCAAACCTATGG+AGG | + | tig0018197:238505-238524 | None:intergenic | 40.0% | |
| GGTTTCAACGTTCAAACCTA+TGG | + | tig0018197:238508-238527 | None:intergenic | 40.0% | |
| AAAACAAAGAGGATGGGAGA+AGG | + | tig0018197:238602-238621 | None:intergenic | 40.0% | |
| GCAGAACAAAACAAAGAGGA+TGG | + | tig0018197:238609-238628 | None:intergenic | 40.0% | |
| AATAGGGTCAAGCTTCAGAA+TGG | - | tig0018197:238721-238740 | Msa1365140:intron | 40.0% | |
| ATAGGGTCAAGCTTCAGAAT+GGG | - | tig0018197:238722-238741 | Msa1365140:intron | 40.0% | |
| AGTGTTGTAGAAGTAGCTTC+AGG | - | tig0018197:238948-238967 | Msa1365140:CDS | 40.0% | |
| !!! | GTACAGCTTATTTTGAAGGG+AGG | - | tig0018197:239218-239237 | Msa1365140:intron | 40.0% |
| CAAATTATTAGGGGCTTTCC+TGG | + | tig0018197:239368-239387 | None:intergenic | 40.0% | |
| ! | AATTTGCAAGTAGTGGGGAA+TGG | - | tig0018197:239382-239401 | Msa1365140:CDS | 40.0% |
| TCAGGAGCAATATTGTTGCA+TGG | - | tig0018197:239574-239593 | Msa1365140:intron | 40.0% | |
| AGATAAAGGAACAGCGACAT+TGG | - | tig0018197:239666-239685 | Msa1365140:intron | 40.0% | |
| GATAAAGGAACAGCGACATT+GGG | - | tig0018197:239667-239686 | Msa1365140:intron | 40.0% | |
| CATTGGGGTTCAGATACAAA+AGG | - | tig0018197:239749-239768 | Msa1365140:intron | 40.0% | |
| !!! | TATATGCTGTGTTTTAGGGG+TGG | - | tig0018197:240189-240208 | Msa1365140:CDS | 40.0% |
| AATGGCTTAGCTACACTTGT+AGG | - | tig0018197:240236-240255 | Msa1365140:intron | 40.0% | |
| ACTTGTAGGTACATACCTGT+TGG | - | tig0018197:240250-240269 | Msa1365140:intron | 40.0% | |
| !!! | GTACATACCTGTTGGTCTTT+TGG | - | tig0018197:240258-240277 | Msa1365140:intron | 40.0% |
| GGATTTAGAGGTCAATGAGT+TGG | + | tig0018197:240562-240581 | None:intergenic | 40.0% | |
| TCTTCTAACAACGGCATCTA+CGG | - | tig0018197:240659-240678 | Msa1365140:intron | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | + | tig0018197:240779-240798 | None:intergenic | 40.0% | |
| CGAGAGTAAAGTAAGTGTAG+CGG | + | tig0018197:240832-240851 | None:intergenic | 40.0% | |
| CACTTACTTTACTCTCGTGT+TGG | - | tig0018197:240835-240854 | Msa1365140:intron | 40.0% | |
| TGTGTTCAACAGGATGTAGT+TGG | - | tig0018197:241249-241268 | Msa1365140:CDS | 40.0% | |
| TTCAACAGGATGTAGTTGGT+AGG | - | tig0018197:241253-241272 | Msa1365140:CDS | 40.0% | |
| TTACTTGGCAAAGTTCCAGA+TGG | - | tig0018197:241453-241472 | Msa1365140:intron | 40.0% | |
| GCTTACGATAGAGCTGAAAA+TGG | - | tig0018197:241507-241526 | Msa1365140:CDS | 40.0% | |
| ! | CTGAGCATTTTCCAACTAAC+TGG | + | tig0018197:241618-241637 | None:intergenic | 40.0% |
| CAGTTAGTTGGAAAATGCTC+AGG | - | tig0018197:241616-241635 | Msa1365140:intron | 40.0% | |
| ! | ATGCCAACTTTTGCATTCTC+TGG | - | tig0018197:241802-241821 | Msa1365140:CDS | 40.0% |
| TGACCAGAGAATGCAAAAGT+TGG | + | tig0018197:241808-241827 | None:intergenic | 40.0% | |
| GTAGTAGCAGTAGTTCGATC+GGG | + | tig0018197:236541-236560 | None:intergenic | 45.0% | |
| TTTCTTCTCCTTGGCGAGAA+CGG | + | tig0018197:236590-236609 | None:intergenic | 45.0% | |
| GAAGACGTTCACGTTTGAGT+TGG | + | tig0018197:236621-236640 | None:intergenic | 45.0% | |
| ACTCAAACGTGAACGTCTTC+AGG | - | tig0018197:236621-236640 | Msa1365140:three_prime_UTR | 45.0% | |
| AAACGTGAACGTCTTCAGGT+AGG | - | tig0018197:236625-236644 | Msa1365140:three_prime_UTR | 45.0% | |
| TGTCCAAACATTGCCAAGTC+AGG | - | tig0018197:236751-236770 | Msa1365140:exon | 45.0% | |
| !! | TCACCTGACTTGGCAATGTT+TGG | + | tig0018197:236757-236776 | None:intergenic | 45.0% |
| !! | GCAGAAATTGGCTGATTTGG+AGG | - | tig0018197:236926-236945 | Msa1365140:intron | 45.0% |
| GCCCCTTCAGATTTCAGAAA+AGG | + | tig0018197:236960-236979 | None:intergenic | 45.0% | |
| GCCGTCAAAAACAAAGATGG+TGG | - | tig0018197:237672-237691 | Msa1365140:intron | 45.0% | |
| TTGTGCGGTTACATCTGAGT+TGG | - | tig0018197:237728-237747 | Msa1365140:intron | 45.0% | |
| GATGAGGAGACGGAAAATGA+AGG | - | tig0018197:237939-237958 | Msa1365140:CDS | 45.0% | |
| GAGATTTCCAACAGTGGTCA+AGG | + | tig0018197:238235-238254 | None:intergenic | 45.0% | |
| GAAAGGGAGATTTCCAACAG+TGG | + | tig0018197:238241-238260 | None:intergenic | 45.0% | |
| CTGTTGGAAATCTCCCTTTC+CGG | - | tig0018197:238241-238260 | Msa1365140:intron | 45.0% | |
| CTTTGCAAACTCTCCGGAAA+GGG | + | tig0018197:238257-238276 | None:intergenic | 45.0% | |
| ACTTTGCAAACTCTCCGGAA+AGG | + | tig0018197:238258-238277 | None:intergenic | 45.0% | |
| CAGGCAATTCCCACATAGTT+TGG | - | tig0018197:238430-238449 | Msa1365140:intron | 45.0% | |
| TTTCAAAACTCTGCTGGGAC+TGG | - | tig0018197:238562-238581 | Msa1365140:CDS | 45.0% | |
| ! | ATTGTTGTGAATAAGGGCGC+TGG | - | tig0018197:238891-238910 | Msa1365140:CDS | 45.0% |
| ACAACACTTTGCATGCGCAT+TGG | + | tig0018197:238936-238955 | None:intergenic | 45.0% | |
| GCTAGTGCAGTGACAATACA+TGG | - | tig0018197:239283-239302 | Msa1365140:intron | 45.0% | |
| TGACAATACATGGCAGGTCA+CGG | - | tig0018197:239293-239312 | Msa1365140:intron | 45.0% | |
| TATACGTAATCCCAGTCAGC+AGG | + | tig0018197:239337-239356 | None:intergenic | 45.0% | |
| !! | GTTCAGGGCATTCAGTTTTG+TGG | + | tig0018197:239438-239457 | None:intergenic | 45.0% |
| TCAAGCATGTGGCAAGTTCA+GGG | + | tig0018197:239453-239472 | None:intergenic | 45.0% | |
| ATCAAGCATGTGGCAAGTTC+AGG | + | tig0018197:239454-239473 | None:intergenic | 45.0% | |
| TGAGTGTATAAGGGGTCTCT+TGG | - | tig0018197:240002-240021 | Msa1365140:CDS | 45.0% | |
| !!! | ACCTGTTGGTCTTTTGGATG+TGG | - | tig0018197:240264-240283 | Msa1365140:intron | 45.0% |
| ACCACATCCAAAAGACCAAC+AGG | + | tig0018197:240268-240287 | None:intergenic | 45.0% | |
| GGACGCCAATTTATTCGTTG+TGG | + | tig0018197:240292-240311 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0018197:240480-240499 | Msa1365140:CDS | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0018197:240481-240500 | Msa1365140:CDS | 45.0% |
| AGGAGAGTCAGGTTAGAAGA+GGG | + | tig0018197:240626-240645 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | tig0018197:240637-240656 | None:intergenic | 45.0% | |
| CTTCTAACAACGGCATCTAC+GGG | - | tig0018197:240660-240679 | Msa1365140:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | + | tig0018197:240752-240771 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | + | tig0018197:240753-240772 | None:intergenic | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | + | tig0018197:240754-240773 | None:intergenic | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | + | tig0018197:240785-240804 | None:intergenic | 45.0% | |
| GATGAGTGGTAAGACTAGAC+AGG | + | tig0018197:240790-240809 | None:intergenic | 45.0% | |
| ! | AAGTAAGTGTAGCGGAGATG+AGG | + | tig0018197:240824-240843 | None:intergenic | 45.0% |
| CTTATCGCACAAAACACCTG+AGG | - | tig0018197:240922-240941 | Msa1365140:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | tig0018197:240941-240960 | None:intergenic | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | tig0018197:240955-240974 | None:intergenic | 45.0% | |
| TTCATCGTATTCAAGCTGGG+TGG | + | tig0018197:240964-240983 | None:intergenic | 45.0% | |
| ! | TCGTTTAAGAGTATGGGACC+AGG | + | tig0018197:241396-241415 | None:intergenic | 45.0% |
| GGTGCAAAAGTAAAGCCATC+TGG | + | tig0018197:241471-241490 | None:intergenic | 45.0% | |
| ! | GCATTTTCCAACTAACTGGG+CGG | + | tig0018197:241614-241633 | None:intergenic | 45.0% |
| ACCATTCACTCGTCTACTCT+AGG | - | tig0018197:241712-241731 | Msa1365140:CDS | 45.0% | |
| TCCTAGAGTAGACGAGTGAA+TGG | + | tig0018197:241716-241735 | None:intergenic | 45.0% | |
| !!! | AAATTTTATTACTAAATTAT+TGG | + | tig0018197:238543-238562 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTTTGA+GGG | - | tig0018197:241287-241306 | Msa1365140:CDS | 5.0% |
| AGGTTTGTCGTTAGGAGCAG+AGG | + | tig0018197:236566-236585 | None:intergenic | 50.0% | |
| AGAACGGGAGGTTTGTCGTT+AGG | + | tig0018197:236574-236593 | None:intergenic | 50.0% | |
| TTCTTCTCCTTGGCGAGAAC+GGG | + | tig0018197:236589-236608 | None:intergenic | 50.0% | |
| CCATTGTCGTGTCAGCGTTT+CGG | - | tig0018197:237307-237326 | Msa1365140:intron | 50.0% | |
| CATTGTCGTGTCAGCGTTTC+GGG | - | tig0018197:237308-237327 | Msa1365140:intron | 50.0% | |
| ! | CGCCATCAGTCTGATGATGA+CGG | - | tig0018197:237774-237793 | Msa1365140:intron | 50.0% |
| AGCCGTCATCATCAGACTGA+TGG | + | tig0018197:237779-237798 | None:intergenic | 50.0% | |
| !! | TCTGATGATGACGGCTCTTG+TGG | - | tig0018197:237783-237802 | Msa1365140:intron | 50.0% |
| !! | CTGATGATGACGGCTCTTGT+GGG | - | tig0018197:237784-237803 | Msa1365140:intron | 50.0% |
| !! | TGATGATGACGGCTCTTGTG+GGG | - | tig0018197:237785-237804 | Msa1365140:intron | 50.0% |
| TGCAGCTTCCGTCCACAATT+TGG | + | tig0018197:238095-238114 | None:intergenic | 50.0% | |
| GGGCACATCCAGATACTGTA+GGG | - | tig0018197:238796-238815 | Msa1365140:intron | 50.0% | |
| GTGCAGTGACAATACATGGC+AGG | - | tig0018197:239287-239306 | Msa1365140:intron | 50.0% | |
| ! | CTATAGCAAGCCTGCTGACT+GGG | - | tig0018197:239324-239343 | Msa1365140:CDS | 50.0% |
| CGACATTGGGACATCAGTTC+TGG | - | tig0018197:239680-239699 | Msa1365140:intron | 50.0% | |
| !! | TTTTAGGGGTGGAGACTACC+AGG | - | tig0018197:240200-240219 | Msa1365140:CDS | 50.0% |
| TGGCGTCCACCATCTTACTA+TGG | - | tig0018197:240304-240323 | Msa1365140:intron | 50.0% | |
| GGCGTCCACCATCTTACTAT+GGG | - | tig0018197:240305-240324 | Msa1365140:intron | 50.0% | |
| GTCCACCATCTTACTATGGG+CGG | - | tig0018197:240308-240327 | Msa1365140:intron | 50.0% | |
| TCCACCATCTTACTATGGGC+GGG | - | tig0018197:240309-240328 | Msa1365140:intron | 50.0% | |
| TCATCCCGCCCATAGTAAGA+TGG | + | tig0018197:240316-240335 | None:intergenic | 50.0% | |
| GGATGACCTTGAGACACTGA+TGG | - | tig0018197:240330-240349 | Msa1365140:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0018197:240482-240501 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0018197:240479-240498 | Msa1365140:CDS | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | - | tig0018197:240485-240504 | Msa1365140:CDS | 50.0% | |
| AGTCAGGTTAGAAGAGGGAG+AGG | + | tig0018197:240621-240640 | None:intergenic | 50.0% | |
| GAGGAGAGTCAGGTTAGAAG+AGG | + | tig0018197:240627-240646 | None:intergenic | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | - | tig0018197:240746-240765 | Msa1365140:intron | 50.0% | |
| CACCATTAGAGAGAGAGTGG+GGG | + | tig0018197:240751-240770 | None:intergenic | 50.0% | |
| ATCGGACAGCAGTCAGTGTT+GGG | + | tig0018197:240871-240890 | None:intergenic | 50.0% | |
| TATCGGACAGCAGTCAGTGT+TGG | + | tig0018197:240872-240891 | None:intergenic | 50.0% | |
| GTAGCAGTAGTTCGATCGGG+AGG | + | tig0018197:236538-236557 | None:intergenic | 55.0% | |
| TCTGAAGGGGCTTGCCCTTA+TGG | - | tig0018197:236969-236988 | Msa1365140:intron | 55.0% | |
| CTGAAGGGGCTTGCCCTTAT+GGG | - | tig0018197:236970-236989 | Msa1365140:intron | 55.0% | |
| CCGAAACGCTGACACGACAA+TGG | + | tig0018197:237310-237329 | None:intergenic | 55.0% | |
| CTTGCACCCTTGACCACTGT+TGG | - | tig0018197:238225-238244 | Msa1365140:intron | 55.0% | |
| GGGGCACATCCAGATACTGT+AGG | - | tig0018197:238795-238814 | Msa1365140:intron | 55.0% | |
| ACAGCTCGCCCTACAGTATC+TGG | + | tig0018197:238807-238826 | None:intergenic | 55.0% | |
| GCTATAGCAAGCCTGCTGAC+TGG | - | tig0018197:239323-239342 | Msa1365140:CDS | 55.0% | |
| ACCACGGGCAATCAAGCATG+TGG | + | tig0018197:239464-239483 | None:intergenic | 55.0% | |
| ATGACTGTTGTGTGCAGCCC+TGG | - | tig0018197:239633-239652 | Msa1365140:intron | 55.0% | |
| GACTACCAGGCGGTTCTTGT+TGG | - | tig0018197:240213-240232 | Msa1365140:intron | 55.0% | |
| CCATTCCAACAAGAACCGCC+TGG | + | tig0018197:240221-240240 | None:intergenic | 55.0% | |
| CCAGGCGGTTCTTGTTGGAA+TGG | - | tig0018197:240218-240237 | Msa1365140:intron | 55.0% | |
| TCCCGCCCATAGTAAGATGG+TGG | + | tig0018197:240313-240332 | None:intergenic | 55.0% | |
| TACCCAGTCAGCTGCAGAGT+CGG | + | tig0018197:240359-240378 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | tig0018197:240487-240506 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | tig0018197:240493-240512 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | tig0018197:240494-240513 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | tig0018197:240493-240512 | Msa1365140:CDS | 55.0% | |
| AGGATGTTGCGCTGGATGAG+TGG | + | tig0018197:240804-240823 | None:intergenic | 55.0% | |
| TTTCCAACTAACTGGGCGGC+AGG | + | tig0018197:241610-241629 | None:intergenic | 55.0% | |
| GAGGGTGGCGAGGATGATTC+TGG | - | tig0018197:236457-236476 | Msa1365140:three_prime_UTR | 60.0% | |
| GCAGTAGTTCGATCGGGAGG+AGG | + | tig0018197:236535-236554 | None:intergenic | 60.0% | |
| CAAACCTCCCGTTCTCGCCA+AGG | - | tig0018197:236579-236598 | Msa1365140:three_prime_UTR | 60.0% | |
| TTCTCCTTGGCGAGAACGGG+AGG | + | tig0018197:236586-236605 | None:intergenic | 60.0% | |
| GCCACATGCTTGATTGCCCG+TGG | - | tig0018197:239460-239479 | Msa1365140:CDS | 60.0% | |
| TAGGGGTGGAGACTACCAGG+CGG | - | tig0018197:240203-240222 | Msa1365140:CDS | 60.0% | |
| CGGAGGCCATCAGTGTCTCA+AGG | + | tig0018197:240339-240358 | None:intergenic | 60.0% | |
| CTCCGACTCTGCAGCTGACT+GGG | - | tig0018197:240354-240373 | Msa1365140:CDS | 60.0% | |
| CGGAGATGAGGATGTTGCGC+TGG | + | tig0018197:240812-240831 | None:intergenic | 60.0% | |
| ! | GGACAGCAGTCAGTGTTGGG+CGG | + | tig0018197:240868-240887 | None:intergenic | 60.0% |
| TTGCCTGCCGCCCAGTTAGT+TGG | - | tig0018197:241604-241623 | Msa1365140:intron | 60.0% | |
| CGTGTCAGCGTTTCGGGCAC+CGG | - | tig0018197:237314-237333 | Msa1365140:intron | 65.0% | |
| CCAGTCAGCTGCAGAGTCGG+AGG | + | tig0018197:240356-240375 | None:intergenic | 65.0% | |
| CCTCCGACTCTGCAGCTGAC+TGG | - | tig0018197:240353-240372 | Msa1365140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 236448 | 241854 | 236448 | ID=Msa1365140;Name=Msa1365140 |
| tig0018197 | mRNA | 236448 | 241854 | 236448 | ID=Msa1365140-mRNA-1;Parent=Msa1365140;Name=Msa1365140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=6|1|1|1|1|1|10|321|682 |
| tig0018197 | exon | 236448 | 236867 | 236448 | ID=Msa1365140-mRNA-1:exon:14390;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 237927 | 238096 | 237927 | ID=Msa1365140-mRNA-1:exon:14389;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 238532 | 238652 | 238532 | ID=Msa1365140-mRNA-1:exon:14388;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 238807 | 239088 | 238807 | ID=Msa1365140-mRNA-1:exon:14387;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 239304 | 239576 | 239304 | ID=Msa1365140-mRNA-1:exon:14386;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 239970 | 240226 | 239970 | ID=Msa1365140-mRNA-1:exon:14385;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 240342 | 240648 | 240342 | ID=Msa1365140-mRNA-1:exon:14384;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 241139 | 241372 | 241139 | ID=Msa1365140-mRNA-1:exon:14383;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 241459 | 241575 | 241459 | ID=Msa1365140-mRNA-1:exon:14382;Parent=Msa1365140-mRNA-1 |
| tig0018197 | exon | 241660 | 241854 | 241660 | ID=Msa1365140-mRNA-1:exon:14381;Parent=Msa1365140-mRNA-1 |
| tig0018197 | five_prime_UTR | 241849 | 241854 | 241849 | ID=Msa1365140-mRNA-1:five_prime_utr;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 241660 | 241848 | 241660 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 241459 | 241575 | 241459 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 241139 | 241372 | 241139 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 240342 | 240648 | 240342 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 239970 | 240226 | 239970 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 239304 | 239576 | 239304 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 238807 | 239088 | 238807 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 238532 | 238652 | 238532 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 237927 | 238096 | 237927 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | CDS | 236769 | 236867 | 236769 | ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1 |
| tig0018197 | three_prime_UTR | 236448 | 236768 | 236448 | ID=Msa1365140-mRNA-1:three_prime_utr;Parent=Msa1365140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
