AlfalfaGEDB | Msa1365140

M. sativa cultivar zhongmu-4 / Msa1365140

KEGG: K05544
GO: GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360
PFAM: PF18044.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365140	XP_003604013.1	95.671	693	17	2	1	682	1	691	0.0	1359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365140	sp\|Q9T0J6\|DUS3L_ARATH	62.536	686	216	11	8	682	36	691	0.0	863

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365140	G7J7T8	95.671	693	17	2	1	682	1	691	0.0	1359

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TFs/TRs:

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Gene ID	Type	Classification
Msa1365140	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140850	Msa1365140	0.811091	8.324871e-51	-8.615850e-47
Msa0343500	Msa1365140	0.804831	1.788644e-49	-8.615850e-47
Msa0516810	Msa1365140	0.835827	1.337414e-56	-8.615850e-47
Msa0524110	Msa1365140	0.961978	2.473083e-120	-8.615850e-47
Msa0617540	Msa1365140	0.818799	1.622923e-52	-8.615850e-47
Msa0698780	Msa1365140	0.846466	2.134231e-59	-8.615850e-47
Msa1021470	Msa1365140	0.832445	9.413834e-56	-8.615850e-47
Msa1060230	Msa1365140	0.823583	1.281170e-53	-8.615850e-47
Msa1085420	Msa1365140	0.824238	8.995802e-54	-8.615850e-47
Msa1148910	Msa1365140	0.811908	5.533584e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365140	MtrunA17_Chr3g0145331	95.671	693	17	2	1	682	1	691	0.0	1359
Msa1365140	MtrunA17_Chr8g0366841	28.000	250	157	7	325	558	1	243	5.31e-21	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365140	AT4G38890.1	62.536	686	216	11	8	682	36	691	0.0	863
Msa1365140	AT3G49640.4	28.846	312	180	12	325	616	1	290	7.00e-27	112
Msa1365140	AT3G49640.1	28.846	312	180	12	325	616	1	290	2.65e-26	110
Msa1365140	AT3G49640.3	31.034	232	130	7	325	536	1	222	1.51e-21	95.1
Msa1365140	AT3G49640.5	30.045	223	129	9	400	616	50	251	2.85e-20	91.7
Msa1365140	AT3G49640.2	30.045	223	129	9	400	616	50	251	8.78e-20	90.9
Msa1365140	AT5G67220.1	27.404	208	143	4	328	533	87	288	4.19e-16	81.6

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Find 171 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCTTATTGATTTC+AGG	0.171029	tig0018197:-240090	Msa1365140:CDS
AAAGAAGCTTATTGATTTCA+GGG	0.413252	tig0018197:-240089	Msa1365140:CDS
AAATTGTGAAGATGAGGAGA+CGG	0.597649	tig0018197:-240351	Msa1365140:CDS
AACTTAGAATCTGAGTCAGC+AGG	0.536668	tig0018197:+240470	None:intergenic
AACTTTAATAAGTGCACCAC+GGG	0.546118	tig0018197:+238804	None:intergenic
AAGGAAAGGTGTGAAGTTAA+TGG	0.263218	tig0018197:-241227	Msa1365140:CDS
AATAGGGTCAAGCTTCAGAA+TGG	0.525188	tig0018197:-239559	Msa1365140:intron
AATCTACAGGATAACCCATA+AGG	0.452239	tig0018197:+241296	None:intergenic
AATGGCTTAGCTACACTTGT+AGG	0.413091	tig0018197:-238044	Msa1365140:CDS
AATTTGCAAGTAGTGGGGAA+TGG	0.559807	tig0018197:-238898	Msa1365140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATCCGTTAGAAGATAA+AGG	+	tig0018197:237035-237054	None:intergenic	30.0%
ATGAATAATTACAAGCGCAT+TGG	+	tig0018197:237420-237439	None:intergenic	30.0%
TAATAAAGGAACACTGACAA+AGG	+	tig0018197:237507-237526	None:intergenic	30.0%
ACTTTAGTGCTTATAGTCTA+TGG	-	tig0018197:237979-237998	Msa1365140:CDS	30.0%
TCAACTAGAATTGAATGCAA+AGG	+	tig0018197:238031-238050	None:intergenic	30.0%
ATCCTGAGTATGATGTATAT+AGG	-	tig0018197:238368-238387	Msa1365140:intron	30.0%
TCCTGAGTATGATGTATATA+GGG	-	tig0018197:238369-238388	Msa1365140:intron	30.0%
AGACAAATACCAAACTATGT+GGG	+	tig0018197:238442-238461	None:intergenic	30.0%
AAGACAAATACCAAACTATG+TGG	+	tig0018197:238443-238462	None:intergenic	30.0%
GAACGTTGAAACCTTAATAT+AGG	-	tig0018197:238515-238534	Msa1365140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018197	gene	236448	241854	236448	ID=Msa1365140;Name=Msa1365140
tig0018197	mRNA	236448	241854	236448	ID=Msa1365140-mRNA-1;Parent=Msa1365140;Name=Msa1365140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=6\|1\|1\|1\|1\|1\|10\|321\|682
tig0018197	exon	236448	236867	236448	ID=Msa1365140-mRNA-1:exon:14390;Parent=Msa1365140-mRNA-1
tig0018197	exon	237927	238096	237927	ID=Msa1365140-mRNA-1:exon:14389;Parent=Msa1365140-mRNA-1
tig0018197	exon	238532	238652	238532	ID=Msa1365140-mRNA-1:exon:14388;Parent=Msa1365140-mRNA-1
tig0018197	exon	238807	239088	238807	ID=Msa1365140-mRNA-1:exon:14387;Parent=Msa1365140-mRNA-1
tig0018197	exon	239304	239576	239304	ID=Msa1365140-mRNA-1:exon:14386;Parent=Msa1365140-mRNA-1
tig0018197	exon	239970	240226	239970	ID=Msa1365140-mRNA-1:exon:14385;Parent=Msa1365140-mRNA-1
tig0018197	exon	240342	240648	240342	ID=Msa1365140-mRNA-1:exon:14384;Parent=Msa1365140-mRNA-1
tig0018197	exon	241139	241372	241139	ID=Msa1365140-mRNA-1:exon:14383;Parent=Msa1365140-mRNA-1
tig0018197	exon	241459	241575	241459	ID=Msa1365140-mRNA-1:exon:14382;Parent=Msa1365140-mRNA-1
tig0018197	exon	241660	241854	241660	ID=Msa1365140-mRNA-1:exon:14381;Parent=Msa1365140-mRNA-1
tig0018197	five_prime_UTR	241849	241854	241849	ID=Msa1365140-mRNA-1:five_prime_utr;Parent=Msa1365140-mRNA-1
tig0018197	CDS	241660	241848	241660	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	241459	241575	241459	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	241139	241372	241139	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	240342	240648	240342	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	239970	240226	239970	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	239304	239576	239304	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	238807	239088	238807	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	238532	238652	238532	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	237927	238096	237927	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	CDS	236769	236867	236769	ID=Msa1365140-mRNA-1:cds;Parent=Msa1365140-mRNA-1
tig0018197	three_prime_UTR	236448	236768	236448	ID=Msa1365140-mRNA-1:three_prime_utr;Parent=Msa1365140-mRNA-1

Gene Sequence

>Msa1365140

ATGGAGGGTGGCGAGGATGATTCTGGCGAACAACTGATCGCAAGATGCATAGCTCCTGTTAAGAAGGACTTCATTCGTCCTCCTCCCGATCGAACTACTGCTACTACTTCCTCTGCTCCTAACGACAAACCTCCCGTTCTCGCCAAGGAGAAGAAATCTAAACGCCAACTCAAACGTGAACGTCTTCAGGATAAAAAATCAACAAAAAACCTTTGTCCAAACATTGCCAAGTCAGGTGATGTTAATTCCTGTCCTTATCAAGAAAACTGTCGTTTCAGCCATGATATTCAAGCATTCAAGGAACAGAAATTGGCTGATTTGGAGGGTGAATGTCCTTTTCTGAAATCTGAAGGGGCTTGCCCTTATGGGTTATCCTGTAGATTTTTAAATACACATCAAGAGGGTAAGCCTTTATCTTCTAACGGATTGAAGGAAAGGTGTGAAGTTAATGGTTTTAGCAAAGATGTTCAGAAGCTTTTATGGAAAAATAAGATGACTTTCCCCAAAACTGATGCCAAACTCAAAACTCTTGGTCTCTTGAATAAGTCAAAAGGGAATGCCGTCAAAAACAAAGATGGTGGTGATAAATGTGTTTGGTCTGATGACAATGGTTCTTGTGCGGTTACATCTGAGTTGGAAAACAAAGACGATGGTGACAAACGCCATCAGTCTGATGATGACGGCTCTTGTGGGGTTCCTGCTGACTCAGATTCTAAGTTAGAACGCTCTGTAGATGTTATAAAAGATGATGATGGCATTAAAAGAGAACTTGAACCTGATATACCTTGTCCCCAAAAGAAAAGAAAAACCGCAGAAAATTGTGAAGATGAGGAGACGGAAAATGAAGGTGTGAGTGTTGATGACCAAATTGTGGACGGAAGCTGCATAAGATCTGAATCAGAGGCAGGAACTGAAGTTATAACCCCAGAAACTGATCTAAGCTTGAAGTCACACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGAAATAACATGCGGTGAAATGGCAATGTGCACAAATCTTTTGGAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCACATCCAGATACTGTAGGGCGAGCTGTTGAACTAATAGAAAAGGAATGTACAGTAGATTTCATTGATATAAACATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGCGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGCAAAGTGTTGTAGAAGTAGCTTCAGGCACAGTCGATATTCCAGTAACTATAAAGGTACGTACAGCTTATTTTGAAGGGAGGAATCGTATCGACTCTCTGATAGCAAACTTTAGCTCTTGGGGAGCTAGTGCAGTGACAATACATGGCAGGTCACGGCAACAACGCTATAGCAAGCCTGCTGACTGGGATTACGTATATCAGTGTACCAGGAAAGCCCCTAATAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAAAACTGAATGCCCTGAACTTGCCACATGCTTGATTGCCCGTGGTGCACTTATTAAACCCTGGATATTTACAGAGATAAAGGAACAGCGACATTGGGACATCAGTTCTGGCGAGCGATTAAATATTTTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGTTCAGATACAAAAGGGGTGGAGACTACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGAATAAATTGGCGTCCACCATCTTACTATGGGCGGGATGACCTTGAGACACTGATGGCCTCCGACTCTGCAGCTGACTGGGTGCGATTATCAGAGATGTTACTTGGCAAAGTTCCAGATGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA

Protein sequence

>Msa1365140

MEGGEDDSGEQLIARCIAPVKKDFIRPPPDRTTATTSSAPNDKPPVLAKEKKSKRQLKRERLQDKKSTKNLCPNIAKSGDVNSCPYQENCRFSHDIQAFKEQKLADLEGECPFLKSEGACPYGLSCRFLNTHQEGKPLSSNGLKERCEVNGFSKDVQKLLWKNKMTFPKTDAKLKTLGLLNKSKGNAVKNKDGGDKCVWSDDNGSCAVTSELENKDDGDKRHQSDDDGSCGVPADSDSKLERSVDVIKDDDGIKRELEPDIPCPQKKRKTAENCEDEETENEGVSVDDQIVDGSCIRSESEAGTEVITPETDLSLKSHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGAEITCGEMAMCTNLLEGQASEWALLRRHSSEDLFGVQICGAHPDTVGRAVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMQSVVEVASGTVDIPVTIKVRTAYFEGRNRIDSLIANFSSWGASAVTIHGRSRQQRYSKPADWDYVYQCTRKAPNNLQVVGNGDVFSFVDWNNHKTECPELATCLIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG*